Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.07206 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.057102 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.305499 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.037848 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background Finished invoke: name: bg status: 0 time: 0.030857 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 738.077908 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/seqs-shuffled Finished invoke: name: dreme status: 0 time: 52.48173 Invoking: centrimo -seqlen 466 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.41706 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.505113 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background -primary BDTGGYYBAGTKGKTWRAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.49905 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background -primary RAGRTCVBSGGTTCGATYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.503121 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background -primary GGTSAMARCGWKATGTGATARCCRYTACAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.308748 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background -primary CAASTTGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.264493 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background -primary GYGGTCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.221758 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.450572 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background -primary AAAAARAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.346546 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background -primary ATGGGYG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.248045 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background -primary ATCKTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.264655 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background -primary AGARGTC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.251397 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background -primary CCWTAACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.274335 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background -primary ATCCGTRC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.216946 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background -primary CCRTGGAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.231727 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background -primary ATGGTCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.207803 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background -primary AARGCGTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.204891 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background --motif BDTGGYYBAGTKGKTWRAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa Finished invoke: name: fimo1 status: 0 time: 0.4495 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background --motif RAGRTCVBSGGTTCGATYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa Finished invoke: name: fimo2 status: 0 time: 0.271841 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background --motif GGTSAMARCGWKATGTGATARCCRYTACAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa Finished invoke: name: fimo3 status: 0 time: 0.254763 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background --motif CAASTTGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa Finished invoke: name: fimo4 status: 0 time: 0.160441 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background --motif GYGGTCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa Finished invoke: name: fimo5 status: 0 time: 0.153881 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa Finished invoke: name: fimo6 status: 0 time: 0.17214 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background --motif AAAAARAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa Finished invoke: name: fimo7 status: 0 time: 0.174079 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background --motif ATGGGYG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa Finished invoke: name: fimo8 status: 0 time: 0.160803 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background --motif ATCKTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa Finished invoke: name: fimo9 status: 0 time: 0.173402 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background --motif AGARGTC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa Finished invoke: name: fimo10 status: 0 time: 0.161712 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background --motif CCWTAACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa Finished invoke: name: fimo11 status: 0 time: 0.176201 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background --motif ATCCGTRC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa Finished invoke: name: fimo12 status: 0 time: 0.174756 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background --motif CCRTGGAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa Finished invoke: name: fimo13 status: 0 time: 0.17181 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background --motif ATGGTCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa Finished invoke: name: fimo14 status: 0 time: 0.155453 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/background --motif AARGCGTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/BY4742--NOT3.fa Finished invoke: name: fimo15 status: 0 time: 0.154624 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--NOT3/summary.tsv Finished invoke: name: summary status: 0 time: 0.418301 Done