******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MOT3/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:304657-305842 1.0000 100 chrVII:1048204-1050702 1.0000 100 chrXIV:602095-602568 1.0000 100 chrVI:180638-181273 1.0000 100 chrXI:99248-100064 1.0000 100 chrI:166024-166597 1.0000 100 chrIV:1269858-1271039 1.0000 100 chrXVI:810436-811072 1.0000 100 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1.0000 100 chrVII:405256-405814 1.0000 100 chrIII:114130-114807 1.0000 100 chrIX:394557-395313 1.0000 100 chrX:396388-396488 1.0000 100 chrXIII:480396-480894 1.0000 100 chrXIII:67606-68076 1.0000 100 chrIII:82194-82817 1.0000 100 chrIII:14114-16988 1.0000 100 chrXIII:290533-291199 1.0000 100 chrXIV:6511-7174 1.0000 100 chrVII:319588-320140 1.0000 100 chrXIII:499062-501400 1.0000 100 chrX:172719-172819 1.0000 100 chrIV:434004-434558 1.0000 100 chrXIII:504659-505263 1.0000 100 chrVIII:296771-297275 1.0000 100 chrVII:648750-649915 1.0000 100 chrXV:91886-94821 1.0000 100 chrXI:140740-143090 1.0000 100 chrXIII:605654-606028 1.0000 100 chrVII:23817-25816 1.0000 100 chrVII:555085-558053 1.0000 100 chrVII:323491-324626 1.0000 100 chrXV:226455-226924 1.0000 100 chrX:650609-650709 1.0000 100 chrX:538353-538453 1.0000 100 chrXII:366016-366578 1.0000 100 chrXIV:413532-416480 1.0000 100 chrIV:359339-359893 1.0000 100 chrVII:110401-110934 1.0000 100 chrXII:1028811-1030241 1.0000 100 chrVII:700392-701299 1.0000 100 chrII:159780-160077 1.0000 100 chrV:303883-307515 1.0000 100 chrIX:325532-326078 1.0000 100 chrVII:930760-931231 1.0000 100 chrXIII:549823-553287 1.0000 100 chrIV:1080445-1081037 1.0000 100 chrVIII:466755-467273 1.0000 100 chrIV:321620-321976 1.0000 100 chrVII:316529-317388 1.0000 100 chrXII:628155-628664 1.0000 100 chrII:167125-169697 1.0000 100 chrXIV:575067-577512 1.0000 100 chrVI:191292-191815 1.0000 100 chrXII:728188-728569 1.0000 100 chrII:477051-477784 1.0000 100 chrVII:726414-728261 1.0000 100 chrXIII:23669-26001 1.0000 100 chrV:18111-19200 1.0000 100 chrVII:363949-364447 1.0000 100 chrII:181322-181674 1.0000 100 chrI:182350-182791 1.0000 100 chrXV:671057-671474 1.0000 100 chrIV:465112-465737 1.0000 100 chrXII:84076-84460 1.0000 100 chrVIII:125921-127809 1.0000 100 chrIV:341908-342165 1.0000 100 chrII:135981-136351 1.0000 100 chrIV:802541-803030 1.0000 100 chrXIII:768168-768655 1.0000 100 chrXII:793691-797423 1.0000 100 chrXIII:352065-352616 1.0000 100 chrIV:220926-222365 1.0000 100 chrXI:313004-313673 1.0000 100 chrXII:920391-922810 1.0000 100 chrIII:127505-127921 1.0000 100 chrVI:167248-167692 1.0000 100 chrVIII:388656-389212 1.0000 100 chrXV:159170-160790 1.0000 100 chrIV:306177-310237 1.0000 100 chrXVI:435677-436201 1.0000 100 chrXV:903863-904648 1.0000 100 chrXV:832186-832859 1.0000 100 chrVII:371170-371514 1.0000 100 chrXII:201508-202821 1.0000 100 chrII:350619-351157 1.0000 100 chrXV:779661-781014 1.0000 100 chrVII:878395-879055 1.0000 100 chrXV:231925-232479 1.0000 100 chrXV:274438-274986 1.0000 100 chrIX:388161-388978 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MOT3/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MOT3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MOT3/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.297 C 0.203 G 0.203 T 0.297 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MOT3/background): A 0.310 C 0.190 G 0.190 T 0.310 ******************************************************************************** ******************************************************************************** MOTIF BSGGRATCGAACCSVKGAYCTYCNGATTR MEME-1 width = 29 sites = 115 llr = 2347 E-value = 8.5e-554 ******************************************************************************** -------------------------------------------------------------------------------- Motif BSGGRATCGAACCSVKGAYCTYCNGATTR MEME-1 Description -------------------------------------------------------------------------------- Simplified A :12:55:::aa:113127:::122:5116 pos.-specific C 44:::1:8:::a7531::6725533211: probability G 357a52::a::::44581:1:::273123 matrix T 3:1::2a2::::21:3:2417423::761 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * * **** Relative 1.4 * ****** * * Entropy 1.2 * ****** * * * (29.4 bits) 1.0 **** ******* * ** * 0.7 ***** ******** * *** * * 0.5 ***** ***************** ***** 0.2 *********************** ***** 0.0 ----------------------------- Multilevel CGGGAATCGAACCCGGGACCTCCCGATTA consensus GCA GG T GATA T CTATCG G sequence T C TA C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATCGAACCSVKGAYCTYCNGATTR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrV:550989-551582 + 59 3.94e-13 TTGGTCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrII:197263-197888 - 5 3.94e-13 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTA TTAG chrIV:667757-668265 + 55 3.94e-13 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrXII:1051835-1052399 + 13 3.94e-13 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrXII:734564-735135 - 39 3.94e-13 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrXVI:880040-880604 + 33 3.94e-13 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrXIV:602095-602568 - 67 3.94e-13 CTCTA GCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrXV:853978-854438 + 38 2.10e-12 TTGGACGCAA CCGGAATCGAACCGATGACCTCTTCCTTG CAAGGGAAGC chrI:166024-166597 - 42 2.10e-12 TTGGACGCAA CCGGAATCGAACCGATGACCTCTTCCTTG CAAGGGAAGC chrXIII:480396-480894 + 35 4.52e-12 AAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrVII:122025-122634 - 25 4.52e-12 TAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrIX:300012-300519 + 22 4.52e-12 TAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrIV:1352219-1352755 + 38 4.52e-12 TAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrXI:202807-203309 - 26 4.52e-12 AAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrX:414756-414856 - 44 4.52e-12 TAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrVII:185380-186025 + 71 4.52e-12 TAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTA A chrVII:405256-405814 - 19 6.07e-12 GCACTCACGA TGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrII:405596-406228 - 50 6.07e-12 GCACTCACGA TGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrX:355143-355243 - 17 6.07e-12 GCACTCACGA TGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrXI:162247-162763 + 41 6.07e-12 ACACTCACGA TGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrXIII:131540-132105 + 62 6.07e-12 GCACTCACGA TGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrX:374196-374296 + 44 6.07e-12 GCACTCACGA TGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrIV:568660-569256 - 8 6.07e-12 GCACTCACGA TGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCA chrIII:123353-123842 + 39 7.02e-12 TGGGGCGAGC CGGGACTCGAACCCGGGACCTCCCGCACC CTAAGCGAGA chrVII:930760-931231 + 17 1.07e-11 ATGCGCAAGC CCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrXVI:572057-572566 - 41 1.07e-11 TTGCGCAAGC CCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrXVI:860130-860694 - 50 1.07e-11 CTGCGCAAGC CCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrIV:83328-83831 - 52 1.07e-11 TTGCGCAAGC CCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrX:531594-531694 - 4 1.07e-11 CTGCGCAAGC CCGGAATCGAACCGGGGGCCCAACGATGG CAA chrIV:992591-993100 - 70 1.07e-11 GC CCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrXI:46482-47020 + 43 1.42e-11 ATGCCCTCTG TGGGAATTGAACCCACGATCCCCGCATTA CGAGTGCGAT chrII:350619-351157 - 23 1.62e-11 AAGGTCTTAC CCGGATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrIV:802541-803030 + 5 1.62e-11 CTAC CCGGATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrVIII:134106-134594 - 55 1.62e-11 AAGGTCCTAC CCGGATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrIII:168088-168623 + 5 1.62e-11 CTAC CCGGATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrIV:520759-521284 - 35 1.62e-11 AAGGTCCTAC CCGGATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrIV:644964-645395 + 33 1.62e-11 AAGGTCCTAC CCGGATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrXIII:290533-291199 - 19 1.86e-11 ACTCCGCTAC GGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrIII:82194-82817 + 16 1.86e-11 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrV:176878-177461 - 14 1.86e-11 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrII:644975-645406 - 61 1.86e-11 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrX:115680-115780 + 51 1.86e-11 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrVII:541599-542175 - 47 1.86e-11 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrV:487110-487616 + 27 1.86e-11 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrV:130848-131411 + 12 3.57e-11 TAGGTCTTAC CCGGATTCGAACCGGGGTTGTTCGGATCA AAACCGAAAG chrXIII:768168-768655 + 17 5.21e-11 TTGGACGAGT CCGGAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrXII:656666-657223 + 49 5.21e-11 TTGGACGAGT CCGGAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrXIII:320968-321331 + 57 5.21e-11 ATGGACGAGT CCGGAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrVII:774114-774673 - 41 5.21e-11 TTGGACGAGT CCGGAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrIV:410174-410710 - 22 5.21e-11 TTGGACGAGT CCGGAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrX:197098-197198 + 9 5.21e-11 GGACGAGT CCGGAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrIX:325532-326078 - 28 5.89e-11 TTGCTTCCAA TCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrIV:434004-434558 + 42 5.89e-11 ATGCTTCCAA TCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrXV:353863-354336 + 1 5.89e-11 . TCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrXV:113490-114151 - 67 5.89e-11 TCCAA TCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrIX:174779-175431 - 11 5.89e-11 TTGCTTCCAA TCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrXIV:104607-105132 - 21 5.89e-11 ATGCTTCCAA TCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrII:266179-266683 - 32 5.89e-11 ATGCTTCCAA TCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrIV:1075274-1075763 + 13 6.66e-11 ATGTTCCAAC CGAGGATCGAACTCGGGACCTTTGCCGTG TGAAGGCAAC chrV:469241-469718 - 64 7.51e-11 GATTTCGC CCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXIII:586422-586918 + 25 7.51e-11 ATGATTTCGC CCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXI:379473-379979 - 40 7.51e-11 TTGATTTCGC CCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXII:687627-688175 + 17 7.51e-11 ATGATTTCGC CCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrX:378158-378258 - 72 7.51e-11 . CCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrVII:412105-412585 + 8 7.51e-11 ATTTCGC CCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXIII:420289-420885 + 60 7.51e-11 ATGATTTCGC CCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrVIII:85097-85583 + 17 7.51e-11 TTGATTTCGC CCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXI:307917-308457 + 16 7.51e-11 TTGATTTCGC CCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrX:538353-538453 - 64 8.47e-11 GTTCCGTA CGGGACTCGAACCCGCAGTCTTCTCCTTA GGAGGGAGAC chrXIV:374686-375118 - 70 8.47e-11 TC TGTGGATCGAACACAGGACCTCCAGATGA CTTGACCGAA chrIV:488470-489156 + 43 1.07e-10 CTGATCCAAC CGAGGTTCGAACTCGGGATCTTCGCCGTG TAAAGGCGAC chrII:326580-327107 + 8 1.07e-10 ATCCAAC CGAGGTTCGAACTCGGGATCTTCGCCGTG TAAAGGCGAC chrVIII:388656-389212 + 18 1.20e-10 TGGGGCGAGC TGGGAATTGAACCCAGGGCCTCTCGCATG CTTTGTCTTC chrXIV:546922-547395 - 51 1.20e-10 CGGGGCGAGC TGGGAATTGAACCCAGGGCCTCTCGCATG CTTTGTCTTC chrXV:300862-301419 - 71 1.20e-10 C TGGGAATTGAACCCAGGGCCTCTCGCATG CTTTGTCCCC chrXIII:352065-352616 - 43 2.94e-10 ATGCGAATTC TGTGGATCGAACACAGGACCTCCAGATAA CTTGACCGAA chrXVI:559966-560515 + 17 2.94e-10 ATGCGAATTC TGTGGATCGAACACAGGACCTCCAGATAA CTTGACCGAA chrVIII:358278-358785 + 6 2.94e-10 AATTC TGTGGATCGAACACAGGACCTCCAGATAA CTTGACCGAA chrXVI:622321-622851 + 13 2.94e-10 ATGCGAATTC TGTGGATCGAACACAGGACCTCCAGATAA CTTGACCGAA chrVI:157639-158261 + 25 2.94e-10 ATGCGAATTC TGTGGATCGAACACAGGACCTCCAGATAA CTTGACCGAA chrXV:976173-976819 - 10 5.51e-10 TTGCTCCAGG GGAGGTTCGAACTCTCGACCTTCAGATTA TGAGACTGA chrXIII:572635-573230 + 10 5.51e-10 TGCTCCAGG GGAGGTTCGAACTCTCGACCTTCAGATTA TGAGACTGAC chrVII:779383-779919 - 49 7.45e-10 TTGAGCGGTA CGAGAATCGAACCCGTGTCCCCACCTTGG AAGGGTGGGA chrIV:359339-359893 - 69 1.10e-09 ATA GGGGGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrXV:438435-438995 - 36 1.10e-09 ACTCCTCATA GGGGGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrVII:115255-115793 - 72 1.10e-09 . GGGGGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrXI:578753-579315 - 39 1.10e-09 ACTCCTCATA GGGGGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrIV:1095118-1095714 + 13 1.33e-09 ATGCGAACTC TGTGGATCGAACACAGGACCTCCAGATAT CTTGACCAAA chrX:233690-233790 - 59 1.33e-09 TCTTCCCCGC CAGGACTCGAACCTGGAATCTCCTGGTTC GTAGCCAGAC chrXIV:102485-103100 - 10 1.75e-09 ACGACCCCAG TGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCA chrXI:74391-74937 - 46 1.75e-09 GCGACCCCAG TGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrXII:975761-976278 + 23 1.75e-09 ACGACCCCAG TGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrXVI:810436-811072 - 8 1.75e-09 ACGACCCCAG TGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCG chrVI:167248-167692 - 68 2.10e-09 CGGG GGCGAGTCGAACGCCCGATCTCAAGATTT CGTAGTGGTA chrXIII:168574-169074 - 72 2.10e-09 . GGCGAGTCGAACGCCCGATCTCAAGATTT CGTAGTGGTA chrVI:210425-210902 + 15 2.10e-09 ATCTCCCGGG GGCGAGTCGAACGCCCGATCTCAAGATTT CGTAGTGGTA chrXIII:837709-838227 - 61 2.10e-09 ATCTCCCGGG GGCGAGTCGAACGCCCGATCTCAAGATTT CGTAGTGGTA chrX:354026-354126 - 61 2.10e-09 ATCTCCCGGG GGCGAGTCGAACGCCCGATCTCAAGATTT CGTAGTGGTA chrVIII:466755-467273 - 60 2.99e-09 ATGCCACCTG CCAGAATTGAACTAGCGACCTTTGCATTA CAAGTGCAAC chrVII:878395-879055 + 44 3.86e-09 ATGAAACGGA CAGGAATTGAACCTGCAACCCTTCGATTG CAATCTTATT chrXI:302670-303258 - 72 3.86e-09 . CAGGAATTGAACCTGCAACCCTTCGATTG CAATCTTATT chrXII:374183-374679 - 9 8.64e-09 TCTTCCCCGC CAGGACTTGAACCTGGAATCTTCTGGTTC GTAGCCAG chrXI:490719-491247 - 70 8.64e-09 GC CAGGACTTGAACCTGGAATCTTCTGGTTC GTAGCCAGAC chrIV:619687-620288 + 41 8.64e-09 TCTTCCCCGC CAGGACTTGAACCTGGAATCTTCTGGTTC GTAGCCAGAC chrXVI:744003-744607 - 63 9.33e-09 TGCCACCTG TCAGAATTGAACTAACGACCTTTGCATTA CAAGTGCAAC chrXVI:435677-436201 + 13 2.22e-08 AAGCTCGCAC TCAGGATCGAACTAAGGACCAACAGATTT GCAATCTGCT chrVII:706910-707350 + 37 2.22e-08 AAGCTCGCAC TCAGGATCGAACTAAGGACCAACAGATTT GCAATCTGCT chrXV:594115-594673 + 19 2.90e-08 ATGCGCAAGC CGGGAATCGAACCCGGGCCTCATGCTTGG GAAGCATAAA chrIX:336079-336640 + 49 6.48e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrX:541293-541393 - 28 6.48e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrXIII:463264-463915 - 49 6.48e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrXII:426858-427544 - 15 6.48e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrVII:110401-110934 + 17 1.87e-07 TTGCCATCTC CTAGAATCGAACCAGGGTTTCATCGGCCA CAACGATGTG chrVII:319588-320140 - 1 1.87e-07 ATGCCATCTC CTAGAATCGAACCAGGGTTTCATCGGCCA chrV:434373-434777 + 25 1.87e-07 ATGCCATCTC CTAGAATCGAACCAGGGTTTCATCGGCCA CAACGATGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATCGAACCSVKGAYCTYCNGATTR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:550989-551582 3.9e-13 58_[+1]_13 chrII:197263-197888 3.9e-13 4_[-1]_67 chrIV:667757-668265 3.9e-13 54_[+1]_17 chrXII:1051835-1052399 3.9e-13 12_[+1]_59 chrXII:734564-735135 3.9e-13 38_[-1]_33 chrXVI:880040-880604 3.9e-13 32_[+1]_39 chrXIV:602095-602568 3.9e-13 66_[-1]_5 chrXV:853978-854438 2.1e-12 37_[+1]_34 chrI:166024-166597 2.1e-12 41_[-1]_30 chrXIII:480396-480894 4.5e-12 34_[+1]_37 chrVII:122025-122634 4.5e-12 24_[-1]_47 chrIX:300012-300519 4.5e-12 21_[+1]_50 chrIV:1352219-1352755 4.5e-12 37_[+1]_34 chrXI:202807-203309 4.5e-12 25_[-1]_46 chrX:414756-414856 4.5e-12 43_[-1]_28 chrVII:185380-186025 4.5e-12 70_[+1]_1 chrVII:405256-405814 6.1e-12 18_[-1]_53 chrII:405596-406228 6.1e-12 49_[-1]_22 chrX:355143-355243 6.1e-12 16_[-1]_55 chrXI:162247-162763 6.1e-12 40_[+1]_31 chrXIII:131540-132105 6.1e-12 61_[+1]_10 chrX:374196-374296 6.1e-12 43_[+1]_28 chrIV:568660-569256 6.1e-12 7_[-1]_64 chrIII:123353-123842 7e-12 38_[+1]_33 chrVII:930760-931231 1.1e-11 16_[+1]_55 chrXVI:572057-572566 1.1e-11 40_[-1]_31 chrXVI:860130-860694 1.1e-11 49_[-1]_22 chrIV:83328-83831 1.1e-11 51_[-1]_20 chrX:531594-531694 1.1e-11 3_[-1]_68 chrIV:992591-993100 1.1e-11 69_[-1]_2 chrXI:46482-47020 1.4e-11 42_[+1]_29 chrII:350619-351157 1.6e-11 22_[-1]_49 chrIV:802541-803030 1.6e-11 4_[+1]_67 chrVIII:134106-134594 1.6e-11 54_[-1]_17 chrIII:168088-168623 1.6e-11 4_[+1]_67 chrIV:520759-521284 1.6e-11 34_[-1]_37 chrIV:644964-645395 1.6e-11 32_[+1]_39 chrXIII:290533-291199 1.9e-11 18_[-1]_53 chrIII:82194-82817 1.9e-11 15_[+1]_56 chrV:176878-177461 1.9e-11 13_[-1]_58 chrII:644975-645406 1.9e-11 60_[-1]_11 chrX:115680-115780 1.9e-11 50_[+1]_21 chrVII:541599-542175 1.9e-11 46_[-1]_25 chrV:487110-487616 1.9e-11 26_[+1]_45 chrV:130848-131411 3.6e-11 11_[+1]_60 chrXIII:768168-768655 5.2e-11 16_[+1]_55 chrXII:656666-657223 5.2e-11 48_[+1]_23 chrXIII:320968-321331 5.2e-11 56_[+1]_15 chrVII:774114-774673 5.2e-11 40_[-1]_31 chrIV:410174-410710 5.2e-11 21_[-1]_50 chrX:197098-197198 5.2e-11 8_[+1]_63 chrIX:325532-326078 5.9e-11 27_[-1]_44 chrIV:434004-434558 5.9e-11 41_[+1]_30 chrXV:353863-354336 5.9e-11 [+1]_71 chrXV:113490-114151 5.9e-11 66_[-1]_5 chrIX:174779-175431 5.9e-11 10_[-1]_61 chrXIV:104607-105132 5.9e-11 20_[-1]_51 chrII:266179-266683 5.9e-11 31_[-1]_40 chrIV:1075274-1075763 6.7e-11 12_[+1]_59 chrV:469241-469718 7.5e-11 63_[-1]_8 chrXIII:586422-586918 7.5e-11 24_[+1]_47 chrXI:379473-379979 7.5e-11 39_[-1]_32 chrXII:687627-688175 7.5e-11 16_[+1]_55 chrX:378158-378258 7.5e-11 71_[-1] chrVII:412105-412585 7.5e-11 7_[+1]_64 chrXIII:420289-420885 7.5e-11 59_[+1]_12 chrVIII:85097-85583 7.5e-11 16_[+1]_55 chrXI:307917-308457 7.5e-11 15_[+1]_56 chrX:538353-538453 8.5e-11 63_[-1]_8 chrXIV:374686-375118 8.5e-11 69_[-1]_2 chrIV:488470-489156 1.1e-10 42_[+1]_29 chrII:326580-327107 1.1e-10 7_[+1]_64 chrVIII:388656-389212 1.2e-10 17_[+1]_54 chrXIV:546922-547395 1.2e-10 50_[-1]_21 chrXV:300862-301419 1.2e-10 70_[-1]_1 chrXIII:352065-352616 2.9e-10 42_[-1]_29 chrXVI:559966-560515 2.9e-10 16_[+1]_55 chrVIII:358278-358785 2.9e-10 5_[+1]_66 chrXVI:622321-622851 2.9e-10 12_[+1]_59 chrVI:157639-158261 2.9e-10 24_[+1]_47 chrXV:976173-976819 5.5e-10 9_[-1]_62 chrXIII:572635-573230 5.5e-10 9_[+1]_62 chrVII:779383-779919 7.5e-10 48_[-1]_23 chrIV:359339-359893 1.1e-09 68_[-1]_3 chrXV:438435-438995 1.1e-09 35_[-1]_36 chrVII:115255-115793 1.1e-09 71_[-1] chrXI:578753-579315 1.1e-09 38_[-1]_33 chrIV:1095118-1095714 1.3e-09 12_[+1]_59 chrX:233690-233790 1.3e-09 58_[-1]_13 chrXIV:102485-103100 1.8e-09 9_[-1]_62 chrXI:74391-74937 1.8e-09 45_[-1]_26 chrXII:975761-976278 1.8e-09 22_[+1]_49 chrXVI:810436-811072 1.8e-09 7_[-1]_64 chrVI:167248-167692 2.1e-09 67_[-1]_4 chrXIII:168574-169074 2.1e-09 71_[-1] chrVI:210425-210902 2.1e-09 14_[+1]_57 chrXIII:837709-838227 2.1e-09 60_[-1]_11 chrX:354026-354126 2.1e-09 60_[-1]_11 chrVIII:466755-467273 3e-09 59_[-1]_12 chrVII:878395-879055 3.9e-09 43_[+1]_28 chrXI:302670-303258 3.9e-09 71_[-1] chrXII:374183-374679 8.6e-09 8_[-1]_63 chrXI:490719-491247 8.6e-09 69_[-1]_2 chrIV:619687-620288 8.6e-09 40_[+1]_31 chrXVI:744003-744607 9.3e-09 62_[-1]_9 chrXVI:435677-436201 2.2e-08 12_[+1]_59 chrVII:706910-707350 2.2e-08 36_[+1]_35 chrXV:594115-594673 2.9e-08 18_[+1]_53 chrIX:336079-336640 6.5e-08 48_[+1]_23 chrX:541293-541393 6.5e-08 27_[-1]_44 chrXIII:463264-463915 6.5e-08 48_[-1]_23 chrXII:426858-427544 6.5e-08 14_[-1]_57 chrVII:110401-110934 1.9e-07 16_[+1]_55 chrVII:319588-320140 1.9e-07 [-1]_71 chrV:434373-434777 1.9e-07 24_[+1]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATCGAACCSVKGAYCTYCNGATTR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BSGGRATCGAACCSVKGAYCTYCNGATTR width=29 seqs=115 chrV:550989-551582 ( 59) GCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrII:197263-197888 ( 5) GCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrIV:667757-668265 ( 55) GCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrXII:1051835-1052399 ( 13) GCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrXII:734564-735135 ( 39) GCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrXVI:880040-880604 ( 33) GCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrXIV:602095-602568 ( 67) GCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrXV:853978-854438 ( 38) CCGGAATCGAACCGATGACCTCTTCCTTG 1 chrI:166024-166597 ( 42) CCGGAATCGAACCGATGACCTCTTCCTTG 1 chrXIII:480396-480894 ( 35) GGGGGCTCGAACCCCTAACCTTATGATTA 1 chrVII:122025-122634 ( 25) GGGGGCTCGAACCCCTAACCTTATGATTA 1 chrIX:300012-300519 ( 22) GGGGGCTCGAACCCCTAACCTTATGATTA 1 chrIV:1352219-1352755 ( 38) GGGGGCTCGAACCCCTAACCTTATGATTA 1 chrXI:202807-203309 ( 26) GGGGGCTCGAACCCCTAACCTTATGATTA 1 chrX:414756-414856 ( 44) GGGGGCTCGAACCCCTAACCTTATGATTA 1 chrVII:185380-186025 ( 71) GGGGGCTCGAACCCCTAACCTTATGATTA 1 chrVII:405256-405814 ( 19) TGGGGGTCGAACCCATAATCTTCTGATTA 1 chrII:405596-406228 ( 50) TGGGGGTCGAACCCATAATCTTCTGATTA 1 chrX:355143-355243 ( 17) TGGGGGTCGAACCCATAATCTTCTGATTA 1 chrXI:162247-162763 ( 41) TGGGGGTCGAACCCATAATCTTCTGATTA 1 chrXIII:131540-132105 ( 62) TGGGGGTCGAACCCATAATCTTCTGATTA 1 chrX:374196-374296 ( 44) TGGGGGTCGAACCCATAATCTTCTGATTA 1 chrIV:568660-569256 ( 8) TGGGGGTCGAACCCATAATCTTCTGATTA 1 chrIII:123353-123842 ( 39) CGGGACTCGAACCCGGGACCTCCCGCACC 1 chrVII:930760-931231 ( 17) CCGGAATCGAACCGGGGGCCCAACGATGG 1 chrXVI:572057-572566 ( 41) CCGGAATCGAACCGGGGGCCCAACGATGG 1 chrXVI:860130-860694 ( 50) CCGGAATCGAACCGGGGGCCCAACGATGG 1 chrIV:83328-83831 ( 52) CCGGAATCGAACCGGGGGCCCAACGATGG 1 chrX:531594-531694 ( 4) CCGGAATCGAACCGGGGGCCCAACGATGG 1 chrIV:992591-993100 ( 70) CCGGAATCGAACCGGGGGCCCAACGATGG 1 chrXI:46482-47020 ( 43) TGGGAATTGAACCCACGATCCCCGCATTA 1 chrII:350619-351157 ( 23) CCGGATTCGAACCGGGGTTGTCCGGATCA 1 chrIV:802541-803030 ( 5) CCGGATTCGAACCGGGGTTGTCCGGATCA 1 chrVIII:134106-134594 ( 55) CCGGATTCGAACCGGGGTTGTCCGGATCA 1 chrIII:168088-168623 ( 5) CCGGATTCGAACCGGGGTTGTCCGGATCA 1 chrIV:520759-521284 ( 35) CCGGATTCGAACCGGGGTTGTCCGGATCA 1 chrIV:644964-645395 ( 33) CCGGATTCGAACCGGGGTTGTCCGGATCA 1 chrXIII:290533-291199 ( 19) GGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrIII:82194-82817 ( 16) GGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrV:176878-177461 ( 14) GGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrII:644975-645406 ( 61) GGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrX:115680-115780 ( 51) GGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrVII:541599-542175 ( 47) GGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrV:487110-487616 ( 27) GGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrV:130848-131411 ( 12) CCGGATTCGAACCGGGGTTGTTCGGATCA 1 chrXIII:768168-768655 ( 17) CCGGAATCGAACCGGAGACCTCTCCCATG 1 chrXII:656666-657223 ( 49) CCGGAATCGAACCGGAGACCTCTCCCATG 1 chrXIII:320968-321331 ( 57) CCGGAATCGAACCGGAGACCTCTCCCATG 1 chrVII:774114-774673 ( 41) CCGGAATCGAACCGGAGACCTCTCCCATG 1 chrIV:410174-410710 ( 22) CCGGAATCGAACCGGAGACCTCTCCCATG 1 chrX:197098-197198 ( 9) CCGGAATCGAACCGGAGACCTCTCCCATG 1 chrIX:325532-326078 ( 28) TCGGATTTGAACCGATGATCTCCACATTA 1 chrIV:434004-434558 ( 42) TCGGATTTGAACCGATGATCTCCACATTA 1 chrXV:353863-354336 ( 1) TCGGATTTGAACCGATGATCTCCACATTA 1 chrXV:113490-114151 ( 67) TCGGATTTGAACCGATGATCTCCACATTA 1 chrIX:174779-175431 ( 11) TCGGATTTGAACCGATGATCTCCACATTA 1 chrXIV:104607-105132 ( 21) TCGGATTTGAACCGATGATCTCCACATTA 1 chrII:266179-266683 ( 32) TCGGATTTGAACCGATGATCTCCACATTA 1 chrIV:1075274-1075763 ( 13) CGAGGATCGAACTCGGGACCTTTGCCGTG 1 chrV:469241-469718 ( 64) CCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXIII:586422-586918 ( 25) CCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXI:379473-379979 ( 40) CCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXII:687627-688175 ( 17) CCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrX:378158-378258 ( 72) CCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrVII:412105-412585 ( 8) CCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXIII:420289-420885 ( 60) CCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrVIII:85097-85583 ( 17) CCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXI:307917-308457 ( 16) CCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrX:538353-538453 ( 64) CGGGACTCGAACCCGCAGTCTTCTCCTTA 1 chrXIV:374686-375118 ( 70) TGTGGATCGAACACAGGACCTCCAGATGA 1 chrIV:488470-489156 ( 43) CGAGGTTCGAACTCGGGATCTTCGCCGTG 1 chrII:326580-327107 ( 8) CGAGGTTCGAACTCGGGATCTTCGCCGTG 1 chrVIII:388656-389212 ( 18) TGGGAATTGAACCCAGGGCCTCTCGCATG 1 chrXIV:546922-547395 ( 51) TGGGAATTGAACCCAGGGCCTCTCGCATG 1 chrXV:300862-301419 ( 71) TGGGAATTGAACCCAGGGCCTCTCGCATG 1 chrXIII:352065-352616 ( 43) TGTGGATCGAACACAGGACCTCCAGATAA 1 chrXVI:559966-560515 ( 17) TGTGGATCGAACACAGGACCTCCAGATAA 1 chrVIII:358278-358785 ( 6) TGTGGATCGAACACAGGACCTCCAGATAA 1 chrXVI:622321-622851 ( 13) TGTGGATCGAACACAGGACCTCCAGATAA 1 chrVI:157639-158261 ( 25) TGTGGATCGAACACAGGACCTCCAGATAA 1 chrXV:976173-976819 ( 10) GGAGGTTCGAACTCTCGACCTTCAGATTA 1 chrXIII:572635-573230 ( 10) GGAGGTTCGAACTCTCGACCTTCAGATTA 1 chrVII:779383-779919 ( 49) CGAGAATCGAACCCGTGTCCCCACCTTGG 1 chrIV:359339-359893 ( 69) GGGGGCTCGAACCCCTGACATTTCGGTAT 1 chrXV:438435-438995 ( 36) GGGGGCTCGAACCCCTGACATTTCGGTAT 1 chrVII:115255-115793 ( 72) GGGGGCTCGAACCCCTGACATTTCGGTAT 1 chrXI:578753-579315 ( 39) GGGGGCTCGAACCCCTGACATTTCGGTAT 1 chrIV:1095118-1095714 ( 13) TGTGGATCGAACACAGGACCTCCAGATAT 1 chrX:233690-233790 ( 59) CAGGACTCGAACCTGGAATCTCCTGGTTC 1 chrXIV:102485-103100 ( 10) TGAGGGTTGAACTCACGATCTTGCGATTA 1 chrXI:74391-74937 ( 46) TGAGGGTTGAACTCACGATCTTGCGATTA 1 chrXII:975761-976278 ( 23) TGAGGGTTGAACTCACGATCTTGCGATTA 1 chrXVI:810436-811072 ( 8) TGAGGGTTGAACTCACGATCTTGCGATTA 1 chrVI:167248-167692 ( 68) GGCGAGTCGAACGCCCGATCTCAAGATTT 1 chrXIII:168574-169074 ( 72) GGCGAGTCGAACGCCCGATCTCAAGATTT 1 chrVI:210425-210902 ( 15) GGCGAGTCGAACGCCCGATCTCAAGATTT 1 chrXIII:837709-838227 ( 61) GGCGAGTCGAACGCCCGATCTCAAGATTT 1 chrX:354026-354126 ( 61) GGCGAGTCGAACGCCCGATCTCAAGATTT 1 chrVIII:466755-467273 ( 60) CCAGAATTGAACTAGCGACCTTTGCATTA 1 chrVII:878395-879055 ( 44) CAGGAATTGAACCTGCAACCCTTCGATTG 1 chrXI:302670-303258 ( 72) CAGGAATTGAACCTGCAACCCTTCGATTG 1 chrXII:374183-374679 ( 9) CAGGACTTGAACCTGGAATCTTCTGGTTC 1 chrXI:490719-491247 ( 70) CAGGACTTGAACCTGGAATCTTCTGGTTC 1 chrIV:619687-620288 ( 41) CAGGACTTGAACCTGGAATCTTCTGGTTC 1 chrXVI:744003-744607 ( 63) TCAGAATTGAACTAACGACCTTTGCATTA 1 chrXVI:435677-436201 ( 13) TCAGGATCGAACTAAGGACCAACAGATTT 1 chrVII:706910-707350 ( 37) TCAGGATCGAACTAAGGACCAACAGATTT 1 chrXV:594115-594673 ( 19) CGGGAATCGAACCCGGGCCTCATGCTTGG 1 chrIX:336079-336640 ( 49) GGGGAATTGAACCCCGATCTGGCACGCGA 1 chrX:541293-541393 ( 28) GGGGAATTGAACCCCGATCTGGCACGCGA 1 chrXIII:463264-463915 ( 49) GGGGAATTGAACCCCGATCTGGCACGCGA 1 chrXII:426858-427544 ( 15) GGGGAATTGAACCCCGATCTGGCACGCGA 1 chrVII:110401-110934 ( 17) CTAGAATCGAACCAGGGTTTCATCGGCCA 1 chrVII:319588-320140 ( 1) CTAGAATCGAACCAGGGTTTCATCGGCCA 1 chrV:434373-434777 ( 25) CTAGAATCGAACCAGGGTTTCATCGGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATCGAACCSVKGAYCTYCNGATTR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 7.55949 E= 8.5e-554 -1349 110 72 -15 -257 113 141 -357 -45 -213 182 -235 -1349 -1349 239 -1349 82 -1349 125 -1349 68 -36 7 -98 -1349 -1349 -1349 169 -1349 202 -1349 -45 -1349 -1349 239 -1349 169 -1349 -1349 -1349 169 -1349 -1349 -1349 -1349 239 -1349 -1349 -235 189 -213 -70 -235 141 101 -257 -7 64 104 -415 -257 -36 138 -3 -51 -1349 204 -1349 120 -445 -113 -70 -1349 161 -1349 43 -315 187 -45 -125 -415 36 -245 118 -157 130 -245 34 -45 148 -245 -57 -40 76 -6 -25 -1349 68 187 -1349 73 19 41 -415 -183 -164 -87 127 -183 -99 -13 105 87 -213 59 -157 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATCGAACCSVKGAYCTYCNGATTR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 115 E= 8.5e-554 0.000000 0.408696 0.313043 0.278261 0.052174 0.417391 0.504348 0.026087 0.226087 0.043478 0.669565 0.060870 0.000000 0.000000 1.000000 0.000000 0.547826 0.000000 0.452174 0.000000 0.495652 0.147826 0.200000 0.156522 0.000000 0.000000 0.000000 1.000000 0.000000 0.773913 0.000000 0.226087 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.060870 0.704348 0.043478 0.191304 0.060870 0.504348 0.382609 0.052174 0.295652 0.295652 0.391304 0.017391 0.052174 0.147826 0.495652 0.304348 0.217391 0.000000 0.782609 0.000000 0.713043 0.008696 0.086957 0.191304 0.000000 0.582609 0.000000 0.417391 0.034783 0.695652 0.139130 0.130435 0.017391 0.243478 0.034783 0.704348 0.104348 0.469565 0.034783 0.391304 0.226087 0.530435 0.034783 0.208696 0.234783 0.321739 0.182609 0.260870 0.000000 0.304348 0.695652 0.000000 0.513043 0.217391 0.252174 0.017391 0.086957 0.060870 0.104348 0.747826 0.086957 0.095652 0.173913 0.643478 0.565217 0.043478 0.286957 0.104348 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATCGAACCSVKGAYCTYCNGATTR MEME-1 regular expression -------------------------------------------------------------------------------- [CGT][GC][GA]G[AG][AG]T[CT]GAACC[CG][GAC][GT][GA]A[CT]C[TC][CT][CAT][CTA][GC][AGC]TT[AG] -------------------------------------------------------------------------------- Time 350.75 secs. ******************************************************************************** ******************************************************************************** MOTIF GSBYNYDTGGYCYAGTGGKTWRRGSS MEME-2 width = 26 sites = 105 llr = 1665 E-value = 1.9e-297 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSBYNYDTGGYCYAGTGGKTWRRGSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:1212:3:::1a1::::255421: pos.-specific C 143434::::753:::2::1:12154 probability G 9531224:7a:21:9:5a51132644 matrix T :134334a::324::93:56411111 bits 2.4 * 2.2 * * 1.9 * * * 1.7 * * * ** * Relative 1.4 * * * *** * Entropy 1.2 * **** *** * (22.9 bits) 1.0 * **** *** ** 0.7 ** **** ****** ** 0.5 **** ****** ****** *** 0.2 **** ********************* 0.0 -------------------------- Multilevel GGCCCCGTGGCCTAGTGGTTAAAGCG consensus CTTTTT A TGC T GATGG GC sequence G G A T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYDTGGYCYAGTGGKTWRRGSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------- chrXIII:768168-768655 - 55 4.49e-12 AATAAGAAAT GGGCGTGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrVII:774114-774673 + 6 4.49e-12 TAATT GGGCGTGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXI:517767-518209 + 50 4.49e-12 TATCTACTAT GGGCGTGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrVI:204755-205222 - 33 4.49e-12 ACAAACGTTC GGGCGTGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrX:197098-197198 - 47 4.49e-12 AATAATATTA GGGCGTGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrV:443034-443507 - 30 1.08e-11 ATTAAAATTT GGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXII:1051835-1052399 - 52 1.08e-11 TCCTTTTCAT GGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXII:734564-735135 + 3 1.08e-11 TT GGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXVI:880040-880604 - 72 1.08e-11 AAT GGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXIV:602095-602568 + 31 1.08e-11 AGATAACAAT GGTCTCTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrI:166024-166597 + 7 3.60e-11 TGAGTT GGGCACATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrXV:274438-274986 + 11 4.36e-11 AAGTAATCGT GTCCCAGTGGCCGAGTGGTTAAGGCG ATGCCCTGCT chrIV:1150654-1151205 - 37 4.36e-11 AAGTGTTTCA GTCCCAGTGGCCGAGTGGTTAAGGCG ATGCCTGCTA chrI:182350-182791 - 58 6.31e-11 ATACAATTTT GGCAACTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:1305372-1305946 + 21 6.31e-11 TACAAATTAA GGCAACTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrX:523834-523934 - 30 6.31e-11 AGAGATTAAA GGCAACTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:980740-981280 - 70 6.31e-11 ATTGA GGCAACTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:437527-438036 + 41 6.31e-11 TCATTAGTAA GGCAACTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrV:288193-288766 - 70 9.03e-11 TGATA GGCACTATGGCCGAGTGGTTAAGGCG ACAGACTTGA chrX:617689-617789 + 8 2.49e-10 AAACAAT GGGAGTTTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXII:731911-732326 + 22 2.49e-10 AACATACAAT GGGAGTTTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXIV:560495-561045 - 20 3.42e-10 GTAATAACGG GCTTCTATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXV:353863-354336 - 39 3.42e-10 ACGGTTTACT GCTTCTATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXV:113490-114151 + 32 3.42e-10 CAGAGATTTA GCTTCTATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXII:605135-605706 - 37 4.67e-10 TTTCGAAAAT GCTCGTGTAGCTCAGTGGTTAGAGCT TCGTGCTTAT chrV:469241-469718 + 28 5.43e-10 AGAAATAATT GGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:586422-586918 - 64 5.43e-10 AACTTACTAT GGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXI:379473-379979 + 4 5.43e-10 ATA GGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXII:687627-688175 - 56 5.43e-10 ATAAATAATA GGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:823256-823724 + 42 5.43e-10 CAATAAGAGT GGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrX:378158-378258 + 36 5.43e-10 TAAATTAATA GGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:412105-412585 - 47 5.43e-10 TCAAAAAACT GGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVIII:85097-85583 - 56 5.43e-10 ATAAGAATTT GGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXI:307917-308457 - 55 5.43e-10 ACAATTAAGT GGTTTCGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrIII:127505-127921 + 53 4.83e-09 AAGATAAAAT GACTCCATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXI:74391-74937 + 10 4.83e-09 TAGCAATTA GACTCCATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXV:228052-228611 + 50 4.83e-09 TAAAATATTA GACTCCATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrVI:137247-137914 - 4 4.83e-09 AAAAGTGACT GACTCCATGGCCAAGTTGGTTAAGGC GTG chrXII:975761-976278 - 62 4.83e-09 GGAAATAAAA GACTCCATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXIII:195891-196426 - 37 7.84e-09 AAGTTCACAA GGGCGTGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXII:92281-92869 + 23 7.84e-09 AAGTTAATAA GGGCGTGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXV:300862-301419 + 7 7.84e-09 AAGATC GGGCGTGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrVI:101163-101652 + 19 7.84e-09 ACAATAATTC GGGCGTGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXV:464241-464691 + 34 7.84e-09 AAGTTAACAA GGGCGTGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXIII:480396-480894 - 73 8.82e-09 TA GCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrIX:300012-300519 - 60 8.82e-09 CAACGAAATA GCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrX:414756-414856 + 9 8.82e-09 ACGAATTA GCCTTGTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:930760-931231 - 53 9.91e-09 TAATCAGTAA GCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXV:226455-226924 - 17 9.91e-09 AAGAAATTCA GCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXVI:572057-572566 + 8 9.91e-09 ATACTTC GCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXVI:860130-860694 + 17 9.91e-09 TAAATAACAA GCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVI:161987-162480 + 45 9.91e-09 AAGAAAACAA GCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXIII:183729-184203 - 27 9.91e-09 AATAAAGATC GCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrIV:992591-993100 + 37 9.91e-09 ACAATTGTGA GCGCAAGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXII:628155-628664 + 24 1.11e-08 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrIV:1095118-1095714 - 70 1.74e-08 TGTTA GCGGACTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXIV:374686-375118 + 17 1.74e-08 AGAAAAATAA GCGGACTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXVI:559966-560515 - 74 3.29e-08 A GCGGATTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrII:347384-347904 + 9 3.29e-08 ATTTATAC GGAGGGTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrVIII:358278-358785 - 63 3.29e-08 CAAATAGTAA GCGGATTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrII:36163-36628 + 53 3.29e-08 TTAGTTGTAA GCGGATTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXI:83966-84448 + 51 3.29e-08 AAATTTGTAT GGAGGGTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXVI:622321-622851 - 70 3.29e-08 GATAT GCGGATTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrX:424290-424390 - 11 3.29e-08 TAAATAAGAT GGAGGGTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXIII:572635-573230 - 48 4.93e-08 ATAACAGACA GCTTCAGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrIV:1175578-1176086 + 47 4.93e-08 ACAAAACAAA GCTTCAGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrIV:359339-359893 + 11 5.45e-08 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrVII:115255-115793 + 14 5.45e-08 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrVIII:466755-467273 + 26 8.00e-08 TGTATTTTTA GCCTCCTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrVII:1004009-1004419 + 52 8.00e-08 TCAAGGGTTT GCCTCCTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrII:326580-327107 - 47 8.00e-08 TCGAGTTCCG GGTCCAATGGTCCAGTGGTTCAAGAC GTCGCCTTTA chrVII:661524-661983 + 46 8.00e-08 GTAAAAATTT GCCTCCTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrXVI:744003-744607 + 29 8.00e-08 CAGTGTAAAA GCCTCCTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrIV:802541-803030 - 42 8.79e-08 ATGAATTGTC GGTCCTATAGTGTAGTGGTTATCACT TTCGGTTTTG chrVIII:134106-134594 + 21 8.79e-08 AGTAAGTTCC GGTCCTATAGTGTAGTGGTTATCACT TTCGGTTTTG chrIII:168088-168623 - 42 8.79e-08 AAGAAGTCCT GGTCCTATAGTGTAGTGGTTATCACT TTCGGTTTTG chrXV:594115-594673 - 56 8.79e-08 TGATTGAAAC GCGCAAGTGGTTCAGTGGTTAGAATT TATGCTTCCC chrXII:448467-449017 - 4 8.79e-08 AAGAAGTTCC GGTCCTATAGTGTAGTGGTTATCACT TTC chrIV:644964-645395 - 70 8.79e-08 GTTAC GGTCCTATAGTGTAGTGGTTATCACT TTCGGTTTTG chrVII:779383-779919 + 15 1.27e-07 AGTTAACCCC GGGCGGTTAGTGTAGTGGTTATCATC CCACCCTTCC chrXVI:435677-436201 - 50 1.81e-07 TACAACAAAA GCTCGTATGGCGCAGTGGTAGCGCAG CAGATTGCAA chrXVI:775607-776075 - 20 1.81e-07 TAATTCAAAA GCTCGTATGGCGCAGTGGTAGCGCAG CAGATTGCAA chrVII:706910-707350 - 74 1.81e-07 A GCTCGTATGGCGCAGTGGTAGCGCAG CAGATTGCAA chrII:642841-643297 - 34 1.81e-07 GTAATAGAAA GCTCGTATGGCGCAGTGGTAGCGCAG CAGATTGCAA chrX:233690-233790 + 24 2.34e-07 TATATTCTTG TTCCTCGTGGCCCAATGGTCACGGCG TCTGGCTACG chrXI:490719-491247 + 35 2.34e-07 ATAATTCTTG TTCCTCGTGGCCCAATGGTCACGGCG TCTGGCTACG chrV:492141-492689 - 34 2.34e-07 GAACATCCTA TTCCTCGTGGCCCAATGGTCACGGCG TCTGGCTACG chrV:130848-131411 - 49 2.77e-07 ATAATTAAGA GGTTTTATAGTGTAGTGGTTATCACT TTCGGTTTTG chrXIV:631673-632142 - 35 4.50e-07 AACTTCTACC GGGCGTGTGGTCTAGAGGTATGATTC TCGCTTAGGG chrXV:989037-989536 - 13 5.27e-07 TAGCTATGAC GTTTGGGTGGCCTAGCCGGTTCGCGT GTGCCTGTCG chrII:405596-406228 + 16 8.30e-07 ACAAATAGTA GCTCGCGTGGCGTAATGGCAACGCGT CTGACTTCTA chrVI:167248-167692 + 17 8.93e-07 ACAAAAACGA CTCTCGGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrXIII:168574-169074 + 21 8.93e-07 AAAATAGTCA CTCTCGGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrVI:210425-210902 - 69 8.93e-07 AAACGA CTCTCGGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrXIII:837709-838227 + 10 8.93e-07 GTTAATTGA CTCTCGGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrX:354026-354126 + 10 8.93e-07 CATTTATCA CTCTCGGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrXII:489263-489627 + 24 1.93e-06 GTAAGAGCCT GACCGAGTAGTGTAGTGGGTGACCAT ACGCGAAACT chrXI:0-1075 + 62 2.20e-06 TCATTATTCA CGGCACTTGCCTCAGCGGTTTATACC CTGTGCAATT chrVII:110401-110934 - 54 2.85e-06 ATAATTACCT GCCATCTTAGTATAGTGGTTAGTACA CATCGTTGTG chrV:434373-434777 - 62 2.85e-06 TTGAAAAGTC GCCATCTTAGTATAGTGGTTAGTACA CATCGTTGTG chrVIII:62547-62983 + 40 2.85e-06 AAAATCATAT GCCATCTTAGTATAGTGGTTAGTACA CATCGTTGTG chrIV:1524127-1525677 - 6 4.95e-06 TCATTATACA CGGCACTTGCCTCAGCGGTCTATACC CTGTG chrIV:1075274-1075763 - 51 6.25e-06 CCGTAATATT GTTCCAATAGTGTAGCGGCTATCACG TTGCCTTCAC chrX:517631-517731 - 35 7.00e-06 ATAAAAGTTA AGCGCCGTGGCGCAGTGGAAGCGCGC AGGGCTCATA chrXVI:340517-340796 - 7 1.48e-05 TTCAATGACA GCGTTGATGCCGTATTTGTCAACGTG GTACAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYDTGGYCYAGTGGKTWRRGSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:768168-768655 4.5e-12 54_[-2]_20 chrVII:774114-774673 4.5e-12 5_[+2]_69 chrXI:517767-518209 4.5e-12 49_[+2]_25 chrVI:204755-205222 4.5e-12 32_[-2]_42 chrX:197098-197198 4.5e-12 46_[-2]_28 chrV:443034-443507 1.1e-11 29_[-2]_45 chrXII:1051835-1052399 1.1e-11 51_[-2]_23 chrXII:734564-735135 1.1e-11 2_[+2]_72 chrXVI:880040-880604 1.1e-11 71_[-2]_3 chrXIV:602095-602568 1.1e-11 30_[+2]_44 chrI:166024-166597 3.6e-11 6_[+2]_68 chrXV:274438-274986 4.4e-11 10_[+2]_64 chrIV:1150654-1151205 4.4e-11 36_[-2]_38 chrI:182350-182791 6.3e-11 57_[-2]_17 chrIV:1305372-1305946 6.3e-11 20_[+2]_54 chrX:523834-523934 6.3e-11 29_[-2]_45 chrIV:980740-981280 6.3e-11 69_[-2]_5 chrIV:437527-438036 6.3e-11 40_[+2]_34 chrV:288193-288766 9e-11 69_[-2]_5 chrX:617689-617789 2.5e-10 7_[+2]_67 chrXII:731911-732326 2.5e-10 21_[+2]_53 chrXIV:560495-561045 3.4e-10 19_[-2]_55 chrXV:353863-354336 3.4e-10 38_[-2]_36 chrXV:113490-114151 3.4e-10 31_[+2]_43 chrXII:605135-605706 4.7e-10 36_[-2]_38 chrV:469241-469718 5.4e-10 27_[+2]_47 chrXIII:586422-586918 5.4e-10 63_[-2]_11 chrXI:379473-379979 5.4e-10 3_[+2]_71 chrXII:687627-688175 5.4e-10 55_[-2]_19 chrVII:823256-823724 5.4e-10 41_[+2]_33 chrX:378158-378258 5.4e-10 35_[+2]_39 chrVII:412105-412585 5.4e-10 46_[-2]_28 chrVIII:85097-85583 5.4e-10 55_[-2]_19 chrXI:307917-308457 5.4e-10 54_[-2]_20 chrIII:127505-127921 4.8e-09 52_[+2]_22 chrXI:74391-74937 4.8e-09 9_[+2]_65 chrXV:228052-228611 4.8e-09 49_[+2]_25 chrVI:137247-137914 4.8e-09 3_[-2]_71 chrXII:975761-976278 4.8e-09 61_[-2]_13 chrXIII:195891-196426 7.8e-09 36_[-2]_38 chrXII:92281-92869 7.8e-09 22_[+2]_52 chrXV:300862-301419 7.8e-09 6_[+2]_68 chrVI:101163-101652 7.8e-09 18_[+2]_56 chrXV:464241-464691 7.8e-09 33_[+2]_41 chrXIII:480396-480894 8.8e-09 72_[-2]_2 chrIX:300012-300519 8.8e-09 59_[-2]_15 chrX:414756-414856 8.8e-09 8_[+2]_66 chrVII:930760-931231 9.9e-09 52_[-2]_22 chrXV:226455-226924 9.9e-09 16_[-2]_58 chrXVI:572057-572566 9.9e-09 7_[+2]_67 chrXVI:860130-860694 9.9e-09 16_[+2]_58 chrVI:161987-162480 9.9e-09 44_[+2]_30 chrXIII:183729-184203 9.9e-09 26_[-2]_48 chrIV:992591-993100 9.9e-09 36_[+2]_38 chrXII:628155-628664 1.1e-08 23_[+2]_51 chrIV:1095118-1095714 1.7e-08 69_[-2]_5 chrXIV:374686-375118 1.7e-08 16_[+2]_58 chrXVI:559966-560515 3.3e-08 73_[-2]_1 chrII:347384-347904 3.3e-08 8_[+2]_66 chrVIII:358278-358785 3.3e-08 62_[-2]_12 chrII:36163-36628 3.3e-08 52_[+2]_22 chrXI:83966-84448 3.3e-08 50_[+2]_24 chrXVI:622321-622851 3.3e-08 69_[-2]_5 chrX:424290-424390 3.3e-08 10_[-2]_64 chrXIII:572635-573230 4.9e-08 47_[-2]_27 chrIV:1175578-1176086 4.9e-08 46_[+2]_28 chrIV:359339-359893 5.4e-08 10_[+2]_64 chrVII:115255-115793 5.4e-08 13_[+2]_61 chrVIII:466755-467273 8e-08 25_[+2]_49 chrVII:1004009-1004419 8e-08 51_[+2]_23 chrII:326580-327107 8e-08 46_[-2]_28 chrVII:661524-661983 8e-08 45_[+2]_29 chrXVI:744003-744607 8e-08 28_[+2]_46 chrIV:802541-803030 8.8e-08 41_[-2]_33 chrVIII:134106-134594 8.8e-08 20_[+2]_54 chrIII:168088-168623 8.8e-08 41_[-2]_33 chrXV:594115-594673 8.8e-08 55_[-2]_19 chrXII:448467-449017 8.8e-08 3_[-2]_71 chrIV:644964-645395 8.8e-08 69_[-2]_5 chrVII:779383-779919 1.3e-07 14_[+2]_60 chrXVI:435677-436201 1.8e-07 49_[-2]_25 chrXVI:775607-776075 1.8e-07 19_[-2]_55 chrVII:706910-707350 1.8e-07 73_[-2]_1 chrII:642841-643297 1.8e-07 33_[-2]_41 chrX:233690-233790 2.3e-07 23_[+2]_51 chrXI:490719-491247 2.3e-07 34_[+2]_40 chrV:492141-492689 2.3e-07 33_[-2]_41 chrV:130848-131411 2.8e-07 48_[-2]_26 chrXIV:631673-632142 4.5e-07 34_[-2]_40 chrXV:989037-989536 5.3e-07 12_[-2]_62 chrII:405596-406228 8.3e-07 15_[+2]_59 chrVI:167248-167692 8.9e-07 16_[+2]_58 chrXIII:168574-169074 8.9e-07 20_[+2]_54 chrVI:210425-210902 8.9e-07 68_[-2]_6 chrXIII:837709-838227 8.9e-07 9_[+2]_65 chrX:354026-354126 8.9e-07 9_[+2]_65 chrXII:489263-489627 1.9e-06 23_[+2]_51 chrXI:0-1075 2.2e-06 61_[+2]_13 chrVII:110401-110934 2.8e-06 53_[-2]_21 chrV:434373-434777 2.8e-06 61_[-2]_13 chrVIII:62547-62983 2.8e-06 39_[+2]_35 chrIV:1524127-1525677 5e-06 5_[-2]_69 chrIV:1075274-1075763 6.3e-06 50_[-2]_24 chrX:517631-517731 7e-06 34_[-2]_40 chrXVI:340517-340796 1.5e-05 6_[-2]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYDTGGYCYAGTGGKTWRRGSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSBYNYDTGGYCYAGTGGKTWRRGSS width=26 seqs=105 chrXIII:768168-768655 ( 55) GGGCGTGTGGCGTAGTCGGTAGCGCG 1 chrVII:774114-774673 ( 6) GGGCGTGTGGCGTAGTCGGTAGCGCG 1 chrXI:517767-518209 ( 50) GGGCGTGTGGCGTAGTCGGTAGCGCG 1 chrVI:204755-205222 ( 33) GGGCGTGTGGCGTAGTCGGTAGCGCG 1 chrX:197098-197198 ( 47) GGGCGTGTGGCGTAGTCGGTAGCGCG 1 chrV:443034-443507 ( 30) GGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrXII:1051835-1052399 ( 52) GGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrXII:734564-735135 ( 3) GGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrXVI:880040-880604 ( 72) GGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrXIV:602095-602568 ( 31) GGTCTCTTGGCCCAGTTGGTTAAGGC 1 chrI:166024-166597 ( 7) GGGCACATGGCGCAGTTGGTAGCGCG 1 chrXV:274438-274986 ( 11) GTCCCAGTGGCCGAGTGGTTAAGGCG 1 chrIV:1150654-1151205 ( 37) GTCCCAGTGGCCGAGTGGTTAAGGCG 1 chrI:182350-182791 ( 58) GGCAACTTGGCCGAGTGGTTAAGGCG 1 chrIV:1305372-1305946 ( 21) GGCAACTTGGCCGAGTGGTTAAGGCG 1 chrX:523834-523934 ( 30) GGCAACTTGGCCGAGTGGTTAAGGCG 1 chrIV:980740-981280 ( 70) GGCAACTTGGCCGAGTGGTTAAGGCG 1 chrIV:437527-438036 ( 41) GGCAACTTGGCCGAGTGGTTAAGGCG 1 chrV:288193-288766 ( 70) GGCACTATGGCCGAGTGGTTAAGGCG 1 chrX:617689-617789 ( 8) GGGAGTTTGGCCGAGTGGTTTAAGGC 1 chrXII:731911-732326 ( 22) GGGAGTTTGGCCGAGTGGTTTAAGGC 1 chrXIV:560495-561045 ( 20) GCTTCTATGGCCAAGTTGGTAAGGCG 1 chrXV:353863-354336 ( 39) GCTTCTATGGCCAAGTTGGTAAGGCG 1 chrXV:113490-114151 ( 32) GCTTCTATGGCCAAGTTGGTAAGGCG 1 chrXII:605135-605706 ( 37) GCTCGTGTAGCTCAGTGGTTAGAGCT 1 chrV:469241-469718 ( 28) GGTTTCGTGGTCTAGTCGGTTATGGC 1 chrXIII:586422-586918 ( 64) GGTTTCGTGGTCTAGTCGGTTATGGC 1 chrXI:379473-379979 ( 4) GGTTTCGTGGTCTAGTCGGTTATGGC 1 chrXII:687627-688175 ( 56) GGTTTCGTGGTCTAGTCGGTTATGGC 1 chrVII:823256-823724 ( 42) GGTTTCGTGGTCTAGTCGGTTATGGC 1 chrX:378158-378258 ( 36) GGTTTCGTGGTCTAGTCGGTTATGGC 1 chrVII:412105-412585 ( 47) GGTTTCGTGGTCTAGTCGGTTATGGC 1 chrVIII:85097-85583 ( 56) GGTTTCGTGGTCTAGTCGGTTATGGC 1 chrXI:307917-308457 ( 55) GGTTTCGTGGTCTAGTCGGTTATGGC 1 chrIII:127505-127921 ( 53) GACTCCATGGCCAAGTTGGTTAAGGC 1 chrXI:74391-74937 ( 10) GACTCCATGGCCAAGTTGGTTAAGGC 1 chrXV:228052-228611 ( 50) GACTCCATGGCCAAGTTGGTTAAGGC 1 chrVI:137247-137914 ( 4) GACTCCATGGCCAAGTTGGTTAAGGC 1 chrXII:975761-976278 ( 62) GACTCCATGGCCAAGTTGGTTAAGGC 1 chrXIII:195891-196426 ( 37) GGGCGTGTGGTCTAGTGGTATGATTC 1 chrXII:92281-92869 ( 23) GGGCGTGTGGTCTAGTGGTATGATTC 1 chrXV:300862-301419 ( 7) GGGCGTGTGGTCTAGTGGTATGATTC 1 chrVI:101163-101652 ( 19) GGGCGTGTGGTCTAGTGGTATGATTC 1 chrXV:464241-464691 ( 34) GGGCGTGTGGTCTAGTGGTATGATTC 1 chrXIII:480396-480894 ( 73) GCCTTGTTGGCGCAATCGGTAGCGCG 1 chrIX:300012-300519 ( 60) GCCTTGTTGGCGCAATCGGTAGCGCG 1 chrX:414756-414856 ( 9) GCCTTGTTGGCGCAATCGGTAGCGCG 1 chrVII:930760-931231 ( 53) GCGCAAGTGGTTTAGTGGTAAAATCC 1 chrXV:226455-226924 ( 17) GCGCAAGTGGTTTAGTGGTAAAATCC 1 chrXVI:572057-572566 ( 8) GCGCAAGTGGTTTAGTGGTAAAATCC 1 chrXVI:860130-860694 ( 17) GCGCAAGTGGTTTAGTGGTAAAATCC 1 chrVI:161987-162480 ( 45) GCGCAAGTGGTTTAGTGGTAAAATCC 1 chrXIII:183729-184203 ( 27) GCGCAAGTGGTTTAGTGGTAAAATCC 1 chrIV:992591-993100 ( 37) GCGCAAGTGGTTTAGTGGTAAAATCC 1 chrXII:628155-628664 ( 24) GGTTGTTTGGCCGAGCGGTCTAAGGC 1 chrIV:1095118-1095714 ( 70) GCGGACTTAGCTCAGTTGGGAGAGCG 1 chrXIV:374686-375118 ( 17) GCGGACTTAGCTCAGTTGGGAGAGCG 1 chrXVI:559966-560515 ( 74) GCGGATTTAGCTCAGTTGGGAGAGCG 1 chrII:347384-347904 ( 9) GGAGGGTTGGCCGAGTGGTCTAAGGC 1 chrVIII:358278-358785 ( 63) GCGGATTTAGCTCAGTTGGGAGAGCG 1 chrII:36163-36628 ( 53) GCGGATTTAGCTCAGTTGGGAGAGCG 1 chrXI:83966-84448 ( 51) GGAGGGTTGGCCGAGTGGTCTAAGGC 1 chrXVI:622321-622851 ( 70) GCGGATTTAGCTCAGTTGGGAGAGCG 1 chrX:424290-424390 ( 11) GGAGGGTTGGCCGAGTGGTCTAAGGC 1 chrXIII:572635-573230 ( 48) GCTTCAGTAGCTCAGTAGGAAGAGCG 1 chrIV:1175578-1176086 ( 47) GCTTCAGTAGCTCAGTAGGAAGAGCG 1 chrIV:359339-359893 ( 11) TCCTTGTTAGCTCAGTTGGTAGAGCG 1 chrVII:115255-115793 ( 14) TCCTTGTTAGCTCAGTTGGTAGAGCG 1 chrVIII:466755-467273 ( 26) GCCTCCTTAGCTTAGTGGTAGAGCGT 1 chrVII:1004009-1004419 ( 52) GCCTCCTTAGCTTAGTGGTAGAGCGT 1 chrII:326580-327107 ( 47) GGTCCAATGGTCCAGTGGTTCAAGAC 1 chrVII:661524-661983 ( 46) GCCTCCTTAGCTTAGTGGTAGAGCGT 1 chrXVI:744003-744607 ( 29) GCCTCCTTAGCTTAGTGGTAGAGCGT 1 chrIV:802541-803030 ( 42) GGTCCTATAGTGTAGTGGTTATCACT 1 chrVIII:134106-134594 ( 21) GGTCCTATAGTGTAGTGGTTATCACT 1 chrIII:168088-168623 ( 42) GGTCCTATAGTGTAGTGGTTATCACT 1 chrXV:594115-594673 ( 56) GCGCAAGTGGTTCAGTGGTTAGAATT 1 chrXII:448467-449017 ( 4) GGTCCTATAGTGTAGTGGTTATCACT 1 chrIV:644964-645395 ( 70) GGTCCTATAGTGTAGTGGTTATCACT 1 chrVII:779383-779919 ( 15) GGGCGGTTAGTGTAGTGGTTATCATC 1 chrXVI:435677-436201 ( 50) GCTCGTATGGCGCAGTGGTAGCGCAG 1 chrXVI:775607-776075 ( 20) GCTCGTATGGCGCAGTGGTAGCGCAG 1 chrVII:706910-707350 ( 74) GCTCGTATGGCGCAGTGGTAGCGCAG 1 chrII:642841-643297 ( 34) GCTCGTATGGCGCAGTGGTAGCGCAG 1 chrX:233690-233790 ( 24) TTCCTCGTGGCCCAATGGTCACGGCG 1 chrXI:490719-491247 ( 35) TTCCTCGTGGCCCAATGGTCACGGCG 1 chrV:492141-492689 ( 34) TTCCTCGTGGCCCAATGGTCACGGCG 1 chrV:130848-131411 ( 49) GGTTTTATAGTGTAGTGGTTATCACT 1 chrXIV:631673-632142 ( 35) GGGCGTGTGGTCTAGAGGTATGATTC 1 chrXV:989037-989536 ( 13) GTTTGGGTGGCCTAGCCGGTTCGCGT 1 chrII:405596-406228 ( 16) GCTCGCGTGGCGTAATGGCAACGCGT 1 chrVI:167248-167692 ( 17) CTCTCGGTAGCCAAGTTGGTTTAAGG 1 chrXIII:168574-169074 ( 21) CTCTCGGTAGCCAAGTTGGTTTAAGG 1 chrVI:210425-210902 ( 69) CTCTCGGTAGCCAAGTTGGTTTAAGG 1 chrXIII:837709-838227 ( 10) CTCTCGGTAGCCAAGTTGGTTTAAGG 1 chrX:354026-354126 ( 10) CTCTCGGTAGCCAAGTTGGTTTAAGG 1 chrXII:489263-489627 ( 24) GACCGAGTAGTGTAGTGGGTGACCAT 1 chrXI:0-1075 ( 62) CGGCACTTGCCTCAGCGGTTTATACC 1 chrVII:110401-110934 ( 54) GCCATCTTAGTATAGTGGTTAGTACA 1 chrV:434373-434777 ( 62) GCCATCTTAGTATAGTGGTTAGTACA 1 chrVIII:62547-62983 ( 40) GCCATCTTAGTATAGTGGTTAGTACA 1 chrIV:1524127-1525677 ( 6) CGGCACTTGCCTCAGCGGTCTATACC 1 chrIV:1075274-1075763 ( 51) GTTCCAATAGTGTAGCGGCTATCACG 1 chrX:517631-517731 ( 35) AGCGCCGTGGCGCAGTGGAAGCGCGC 1 chrXVI:340517-340796 ( 7) GCGTTGATGCCGTATTTGTCAACGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYDTGGYCYAGTGGKTWRRGSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 26 n= 45000 bayes= 6.69356 E= 1.9e-297 -502 -151 220 -270 -244 93 129 -144 -344 81 68 11 -156 123 -100 19 -56 59 38 -27 -112 104 -32 2 -50 -1336 117 19 -1336 -1336 -1336 169 -2 -1336 187 -1336 -1336 -273 235 -1336 -1336 179 -1336 15 -344 138 32 -38 -132 68 -51 50 169 -1336 -1336 -1336 -222 -1336 228 -502 -502 -200 -1336 161 -402 -15 151 -22 -1336 -1336 239 -1336 -502 -332 127 73 -38 -115 -173 100 76 -432 -100 26 68 -100 59 -132 53 -7 32 -122 -78 -73 161 -132 -244 141 89 -185 -344 111 114 -112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYDTGGYCYAGTGGKTWRRGSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 26 nsites= 105 E= 1.9e-297 0.009524 0.066667 0.876190 0.047619 0.057143 0.361905 0.466667 0.114286 0.028571 0.333333 0.304762 0.333333 0.104762 0.447619 0.095238 0.352381 0.209524 0.285714 0.247619 0.257143 0.142857 0.390476 0.152381 0.314286 0.219048 0.000000 0.428571 0.352381 0.000000 0.000000 0.000000 1.000000 0.304762 0.000000 0.695238 0.000000 0.000000 0.028571 0.971429 0.000000 0.000000 0.657143 0.000000 0.342857 0.028571 0.495238 0.238095 0.238095 0.123810 0.304762 0.133333 0.438095 1.000000 0.000000 0.000000 0.000000 0.066667 0.000000 0.923810 0.009524 0.009524 0.047619 0.000000 0.942857 0.019048 0.171429 0.542857 0.266667 0.000000 0.000000 1.000000 0.000000 0.009524 0.019048 0.457143 0.514286 0.238095 0.085714 0.057143 0.619048 0.523810 0.009524 0.095238 0.371429 0.495238 0.095238 0.285714 0.123810 0.447619 0.180952 0.238095 0.133333 0.180952 0.114286 0.580952 0.123810 0.057143 0.504762 0.352381 0.085714 0.028571 0.409524 0.419048 0.142857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYDTGGYCYAGTGGKTWRRGSS MEME-2 regular expression -------------------------------------------------------------------------------- G[GC][CTG][CT][CTGA][CT][GTA]T[GA]G[CT][CGT][TC]AGT[GT]G[TG][TA][AT][AG][AG]G[CG][GC] -------------------------------------------------------------------------------- Time 661.33 secs. ******************************************************************************** ******************************************************************************** MOTIF RCTRMRRGAYTCGAACYYKYGCRKSYWAM MEME-3 width = 29 sites = 15 llr = 417 E-value = 1.4e-061 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCTRMRRGAYTCGAACYYKYGCRKSYWAM MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3215455:9::::aa::1::::5:1:595 pos.-specific C 18::6::::3:9:::a55:6:a::451:5 probability G 5:15:55a1:::a:::::6:a:565::1: matrix T ::9::::::7a1::::5444:::4:54:: bits 2.4 * * * ** 2.2 * * * ** 1.9 * ** * ** 1.7 * ****** ** Relative 1.4 * * ****** ** * Entropy 1.2 * * ** ****** **** * * (40.1 bits) 1.0 **************** ******** ** 0.7 ************************** ** 0.5 ***************************** 0.2 ***************************** 0.0 ----------------------------- Multilevel GCTGCGAGATTCGAACTCGCGCGGGCAAC consensus AA AAAG C CTTT ATCTT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTRMRRGAYTCGAACYYKYGCRKSYWAM MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrI:182350-182791 + 7 3.09e-15 ACGACA ACTGCAGGACTCGAACCTGCGCGGGCAAA GCCCAAAAGA chrII:226846-227408 - 46 3.09e-15 AATAACGACA ACTGCAGGACTCGAACCTGCGCGGGCAAA GCCCAAAAGA chrVII:561329-561963 + 71 3.09e-15 AATAACGACA ACTGCAGGACTCGAACCTGCGCGGGCAAA G chrIV:980740-981280 + 19 3.09e-15 AAAAACGACA ACTGCAGGACTCGAACCTGCGCGGGCAAA GCCCAAAAGA chrIV:1305372-1305946 - 70 3.97e-14 CA ACTGCAGGACTCGAACCTGCGCGGGCCAA AGCCCAAAAG chrII:347384-347904 - 59 8.62e-14 ATTACTGAAG GATGCGAGGTTCGAACTCGCGCGGACAAC CGTCCAACAG chrXIV:725911-726409 + 29 8.62e-14 AATACTGAAG GATGCGAGGTTCGAACTCGCGCGGACAAC CGTCCAACAG chrXIII:504659-505263 - 64 2.44e-13 TAATGGTT GCTAAGAGATTCGAACTCTTGCATCTTAC GATACCTGAG chrI:180909-181507 - 63 2.44e-13 ATAATGGTT GCTAAGAGATTCGAACTCTTGCATCTTAC GATACCTGAG chrVII:422855-423536 - 27 2.44e-13 AATAATGGTT GCTAAGAGATTCGAACTCTTGCATCTTAC GATACCTGAG chrVII:205317-205942 - 22 2.44e-13 AATAATGGTT GCTAAGAGATTCGAACTCTTGCATCTTAC GATACCTGAG chrXI:458346-458920 - 54 2.44e-13 AAATATGGTT GCTAAGAGATTCGAACTCTTGCATCTTAC GATACCTGAG chrIV:1461453-1462085 + 1 2.44e-13 . GCTAAGAGATTCGAACTCTTGCATCTTAC GATACCTGAG chrVI:191292-191815 + 15 2.08e-12 AAATGCGTCA CAGACAGGATTCGAACCTGCGCAGGTAAA ACCCAATGCC chrV:288193-288766 + 19 1.29e-11 AAAAACGACA CCAGCAGGATTTGAACCAGCGCGGGCAGA GCCCAACAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTRMRRGAYTCGAACYYKYGCRKSYWAM MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:182350-182791 3.1e-15 6_[+3]_65 chrII:226846-227408 3.1e-15 45_[-3]_26 chrVII:561329-561963 3.1e-15 70_[+3]_1 chrIV:980740-981280 3.1e-15 18_[+3]_53 chrIV:1305372-1305946 4e-14 69_[-3]_2 chrII:347384-347904 8.6e-14 58_[-3]_13 chrXIV:725911-726409 8.6e-14 28_[+3]_43 chrXIII:504659-505263 2.4e-13 63_[-3]_8 chrI:180909-181507 2.4e-13 62_[-3]_9 chrVII:422855-423536 2.4e-13 26_[-3]_45 chrVII:205317-205942 2.4e-13 21_[-3]_50 chrXI:458346-458920 2.4e-13 53_[-3]_18 chrIV:1461453-1462085 2.4e-13 [+3]_71 chrVI:191292-191815 2.1e-12 14_[+3]_57 chrV:288193-288766 1.3e-11 18_[+3]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTRMRRGAYTCGAACYYKYGCRKSYWAM MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCTRMRRGAYTCGAACYYKYGCRKSYWAM width=29 seqs=15 chrI:182350-182791 ( 7) ACTGCAGGACTCGAACCTGCGCGGGCAAA 1 chrII:226846-227408 ( 46) ACTGCAGGACTCGAACCTGCGCGGGCAAA 1 chrVII:561329-561963 ( 71) ACTGCAGGACTCGAACCTGCGCGGGCAAA 1 chrIV:980740-981280 ( 19) ACTGCAGGACTCGAACCTGCGCGGGCAAA 1 chrIV:1305372-1305946 ( 70) ACTGCAGGACTCGAACCTGCGCGGGCCAA 1 chrII:347384-347904 ( 59) GATGCGAGGTTCGAACTCGCGCGGACAAC 1 chrXIV:725911-726409 ( 29) GATGCGAGGTTCGAACTCGCGCGGACAAC 1 chrXIII:504659-505263 ( 64) GCTAAGAGATTCGAACTCTTGCATCTTAC 1 chrI:180909-181507 ( 63) GCTAAGAGATTCGAACTCTTGCATCTTAC 1 chrVII:422855-423536 ( 27) GCTAAGAGATTCGAACTCTTGCATCTTAC 1 chrVII:205317-205942 ( 22) GCTAAGAGATTCGAACTCTTGCATCTTAC 1 chrXI:458346-458920 ( 54) GCTAAGAGATTCGAACTCTTGCATCTTAC 1 chrIV:1461453-1462085 ( 1) GCTAAGAGATTCGAACTCTTGCATCTTAC 1 chrVI:191292-191815 ( 15) CAGACAGGATTCGAACCTGCGCAGGTAAA 1 chrV:288193-288766 ( 19) CCAGCAGGATTTGAACCAGCGCGGGCAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTRMRRGAYTCGAACYYKYGCRKSYWAM MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 11.4164 E= 1.4e-061 11 -51 149 -1055 -63 207 -1055 -1055 -221 -1055 -151 148 59 -1055 149 -1055 37 166 -1055 -1055 59 -1055 149 -1055 78 -1055 129 -1055 -1055 -1055 239 -1055 148 -1055 -51 -1055 -1055 81 -1055 111 -1055 -1055 -1055 169 -1055 229 -1055 -221 -1055 -1055 239 -1055 169 -1055 -1055 -1055 169 -1055 -1055 -1055 -1055 239 -1055 -1055 -1055 129 -1055 78 -221 149 -1055 37 -1055 -1055 166 37 -1055 166 -1055 37 -1055 -1055 239 -1055 -1055 239 -1055 -1055 59 -1055 149 -1055 -1055 -1055 166 37 -122 107 129 -1055 -1055 149 -1055 59 78 -151 -1055 37 159 -1055 -151 -1055 59 149 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTRMRRGAYTCGAACYYKYGCRKSYWAM MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 15 E= 1.4e-061 0.333333 0.133333 0.533333 0.000000 0.200000 0.800000 0.000000 0.000000 0.066667 0.000000 0.066667 0.866667 0.466667 0.000000 0.533333 0.000000 0.400000 0.600000 0.000000 0.000000 0.466667 0.000000 0.533333 0.000000 0.533333 0.000000 0.466667 0.000000 0.000000 0.000000 1.000000 0.000000 0.866667 0.000000 0.133333 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.933333 0.000000 0.066667 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.466667 0.000000 0.533333 0.066667 0.533333 0.000000 0.400000 0.000000 0.000000 0.600000 0.400000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.466667 0.000000 0.533333 0.000000 0.000000 0.000000 0.600000 0.400000 0.133333 0.400000 0.466667 0.000000 0.000000 0.533333 0.000000 0.466667 0.533333 0.066667 0.000000 0.400000 0.933333 0.000000 0.066667 0.000000 0.466667 0.533333 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTRMRRGAYTCGAACYYKYGCRKSYWAM MEME-3 regular expression -------------------------------------------------------------------------------- [GA][CA]T[GA][CA][GA][AG]GA[TC]TCGAAC[TC][CT][GT][CT]GC[GA][GT][GC][CT][AT]A[CA] -------------------------------------------------------------------------------- Time 956.24 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:304657-305842 7.07e-01 100 chrVII:1048204-1050702 3.00e-01 100 chrXIV:602095-602568 3.08e-17 30_[+2(1.08e-11)]_10_[-1(3.94e-13)]_\ 5 chrVI:180638-181273 6.51e-01 100 chrXI:99248-100064 1.36e-02 50_[-2(5.25e-06)]_24 chrI:166024-166597 3.60e-16 6_[+2(3.60e-11)]_9_[-1(2.10e-12)]_\ 30 chrIV:1269858-1271039 4.61e-01 100 chrXVI:810436-811072 1.31e-05 7_[-1(1.75e-09)]_64 chrXIII:378623-379626 7.23e-01 100 chrVII:328341-329158 8.54e-01 100 chrVII:185380-186025 3.57e-08 70_[+1(4.52e-12)]_1 chrXI:219622-220109 6.63e-01 100 chrIV:568660-569256 6.16e-10 7_[-1(6.07e-12)]_19_[+2(2.90e-05)]_\ 19 chrIII:68226-68643 9.78e-01 100 chrXVI:377896-379005 8.34e-01 100 chrIV:992591-993100 8.35e-13 36_[+2(9.91e-09)]_7_[-1(1.07e-11)]_\ 2 chrXI:333634-334987 8.36e-01 100 chrIX:254196-254583 1.72e-01 100 chrXIV:229156-230889 6.38e-01 100 chrIV:913963-914882 2.23e-01 100 chrXII:241602-243751 8.90e-01 100 chrIX:248623-249410 3.20e-01 100 chrII:266179-266683 2.50e-07 31_[-1(5.89e-11)]_40 chrXI:307917-308457 4.14e-13 15_[+1(7.51e-11)]_10_[-2(5.43e-10)]_\ 20 chrXVI:172857-174132 8.78e-01 100 chrVII:255163-255627 9.83e-01 100 chrXV:631789-632133 8.35e-01 100 chrXI:578753-579315 2.25e-07 38_[-1(1.10e-09)]_33 chrVII:702858-703257 9.53e-01 100 chrXV:758845-759672 7.00e-01 100 chrXII:1011823-1012439 9.77e-01 100 chrV:53485-53969 9.20e-01 100 chrXVI:575948-576416 7.20e-01 100 chrII:478909-479516 9.40e-01 100 chrIV:644964-645395 6.23e-12 32_[+1(1.62e-11)]_8_[-2(8.79e-08)]_\ 5 chrXV:571700-572192 3.58e-02 61_[+2(2.90e-05)]_13 chrIV:884156-884679 3.10e-01 100 chrXIII:540279-540946 6.03e-03 100 chrVI:157639-158261 2.79e-06 24_[+1(2.94e-10)]_47 chrXII:636500-640319 3.93e-01 100 chrVIII:62547-62983 1.10e-02 39_[+2(2.85e-06)]_35 chrX:414756-414856 2.96e-13 8_[+2(8.82e-09)]_9_[-1(4.52e-12)]_\ 28 chrVII:115255-115793 3.89e-10 13_[+2(5.45e-08)]_32_[-1(1.10e-09)] chrVIII:147570-149334 2.73e-01 100 chrXII:737778-738234 5.09e-02 100 chrXIII:91075-92143 3.28e-01 100 chrXIII:872674-872943 5.87e-01 100 chrXIV:498925-503348 5.66e-01 100 chrVII:276918-278752 6.96e-01 100 chrXVI:744003-744607 1.04e-09 28_[+2(8.00e-08)]_8_[-1(9.33e-09)]_\ 9 chrXII:948958-953657 6.03e-01 100 chrIV:1461453-1462085 2.88e-10 [+3(2.44e-13)]_71 chrXV:464241-464691 6.32e-06 33_[+2(7.84e-09)]_41 chrXIII:67168-67426 4.39e-01 100 chrVII:766063-766494 1.50e-01 100 chrXI:430606-433073 6.78e-01 100 chrX:227717-227817 3.34e-01 100 chrVI:101163-101652 6.32e-06 18_[+2(7.84e-09)]_56 chrXVI:280517-283365 9.45e-03 100 chrV:491035-491882 9.45e-01 100 chrXI:202807-203309 5.45e-08 25_[-1(4.52e-12)]_46 chrXII:731911-732326 7.67e-08 21_[+2(2.49e-10)]_53 chrXI:558654-559459 6.48e-01 100 chrX:663392-663492 6.56e-01 100 chrV:130848-131411 5.89e-11 11_[+1(3.57e-11)]_8_[-2(2.77e-07)]_\ 26 chrII:88897-89975 7.76e-01 100 chrVI:269476-270158 1.12e-01 13_[+1(7.59e-05)]_58 chrXIII:183729-184203 1.99e-05 26_[-2(9.91e-09)]_48 chrXIII:759376-763159 1.93e-01 100 chrII:642841-643297 3.13e-04 33_[-2(1.81e-07)]_41 chrXII:426858-427544 4.82e-05 14_[-1(6.48e-08)]_57 chrVII:856680-857697 4.45e-01 100 chrXI:46482-47020 6.21e-09 42_[+1(1.42e-11)]_29 chrIII:58691-59100 7.75e-01 100 chrXII:875149-875960 9.91e-01 100 chrIII:78292-78859 1.98e-01 100 chrV:174731-174998 5.03e-01 100 chrXII:280743-284032 2.18e-02 100 chrIV:1175578-1176086 2.88e-04 46_[+2(4.93e-08)]_28 chrXII:10996-12032 6.06e-02 68_[-2(1.99e-05)]_6 chrVII:13-1288 8.19e-01 100 chrXVI:514325-517141 7.61e-01 100 chrV:487110-487616 1.03e-08 26_[+1(1.86e-11)]_45 chrII:592292-593326 2.99e-02 10_[+2(3.47e-05)]_64 chrII:300996-301673 9.12e-01 100 chrXII:257628-259516 4.82e-01 100 chrXVI:403411-404089 7.58e-01 100 chrXII:809122-814061 8.41e-01 100 chrXV:900026-901678 9.97e-01 100 chrVII:938950-939753 5.59e-01 100 chrI:81885-82312 2.88e-01 100 chrX:701764-701864 4.09e-01 100 chrXV:989037-989536 2.10e-04 12_[-2(5.27e-07)]_62 chrVII:706910-707350 3.93e-09 36_[+1(2.22e-08)]_8_[-2(1.81e-07)]_\ 1 chrXV:79443-80152 6.77e-01 100 chrVII:544324-546096 9.98e-01 100 chrXVI:214598-215197 7.04e-01 100 chrXII:448467-449017 2.81e-05 3_[-2(8.79e-08)]_71 chrXVI:794482-796054 8.80e-01 100 chrVIII:237276-238150 8.53e-01 100 chrV:435396-436030 2.69e-01 100 chrII:300057-300281 5.67e-01 100 chrXVI:585745-586212 8.45e-01 100 chrXII:930613-932534 3.62e-01 100 chrXII:234574-234891 9.31e-01 100 chrII:611900-614843 2.90e-01 100 chrVII:986852-987772 3.34e-02 100 chrXVI:901313-901948 4.54e-01 100 chrXII:962841-963326 3.45e-01 100 chrXIV:771775-772445 2.56e-01 100 chrXII:1028177-1028636 5.11e-01 100 chrIX:138157-139353 9.36e-01 100 chrIV:520759-521284 6.23e-12 [+2(8.79e-08)]_8_[-1(1.62e-11)]_37 chrII:415484-415900 9.26e-01 100 chrV:6147-6693 4.15e-01 100 chrIV:619687-620288 5.91e-06 40_[+1(8.64e-09)]_31 chrXV:444577-446226 2.73e-01 100 chrXII:837593-839497 3.89e-01 100 chrIX:98167-100105 9.53e-01 100 chrXV:287531-288494 2.40e-01 100 chrVII:609258-610159 9.71e-01 100 chrXIII:408148-408855 7.66e-02 100 chrVIII:85097-85583 4.14e-13 16_[+1(7.51e-11)]_10_[-2(5.43e-10)]_\ 19 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chrXI:617637-619287 9.41e-01 100 chrXIII:880547-880819 3.24e-01 100 chrVIII:488262-488643 5.04e-01 100 chrVII:364867-366908 7.30e-01 100 chrIII:262674-263049 6.28e-01 100 chrVIII:504198-506203 4.09e-01 100 chrVI:95440-95923 9.83e-02 100 chrX:233690-233790 4.44e-11 23_[+2(2.34e-07)]_9_[-1(1.33e-09)]_\ 13 chrXIII:320968-321331 4.61e-07 56_[+1(5.21e-11)]_15 chrIX:96776-97544 9.15e-01 100 chrV:60968-62169 1.10e-01 100 chrV:206633-207868 1.62e-01 100 chrX:115680-115780 2.45e-08 50_[+1(1.86e-11)]_21 chrXIII:586422-586918 4.14e-13 24_[+1(7.51e-11)]_10_[-2(5.43e-10)]_\ 11 chrV:85065-86963 5.15e-01 100 chrVII:1004009-1004419 6.42e-05 51_[+2(8.00e-08)]_23 chrIV:449400-450075 7.82e-01 100 chrII:644975-645406 1.03e-08 60_[-1(1.86e-11)]_11 chrXVI:209574-210544 4.17e-01 100 chrXVI:338654-339165 6.25e-04 34_[-2(7.00e-06)]_40 chrVII:533798-535231 9.79e-01 100 chrIV:45177-46306 4.54e-01 100 chrIV:1401259-1403461 9.10e-01 100 chrXIV:61523-64645 3.15e-01 100 chrXI:74391-74937 5.80e-11 9_[+2(4.83e-09)]_10_[-1(1.75e-09)]_\ 26 chrXVI:860130-860694 1.21e-12 16_[+2(9.91e-09)]_7_[-1(1.07e-11)]_\ 22 chrXIII:731991-733490 8.06e-01 100 chrXI:108437-110545 7.07e-01 100 chrV:363616-364080 5.29e-01 100 chrVI:210425-210902 9.75e-09 14_[+1(2.10e-09)]_25_[-2(8.93e-07)]_\ 6 chrXII:92281-92869 6.32e-06 22_[+2(7.84e-09)]_52 chrXII:86833-87438 9.80e-01 100 chrIII:315628-316618 4.53e-01 100 chrIV:1354444-1356116 5.95e-01 100 chrVIII:358278-358785 9.41e-11 5_[+1(2.94e-10)]_28_[-2(3.29e-08)]_\ 12 chrXIV:26748-27526 1.19e-01 100 chrV:176878-177461 1.36e-07 13_[-1(1.86e-11)]_58 chrII:544447-544859 1.75e-01 100 chrV:550989-551582 7.04e-10 58_[+1(3.94e-13)]_13 chrXII:903345-904474 7.14e-01 100 chrIV:488470-489156 3.64e-08 42_[+1(1.07e-10)]_29 chrVIII:455600-456180 8.03e-01 100 chrI:3-1123 8.96e-03 29_[+2(4.95e-06)]_45 chrXIV:102485-103100 8.87e-06 9_[-1(1.75e-09)]_62 chrIV:322160-323641 6.77e-01 100 chrVII:400741-401785 5.98e-01 100 chrIV:1095118-1095714 1.26e-10 12_[+1(1.33e-09)]_28_[-2(1.74e-08)]_\ 5 chrXIV:567873-568729 9.96e-01 100 chrXII:656666-657223 4.84e-07 48_[+1(5.21e-11)]_23 chrXII:231894-234289 2.85e-01 100 chrIV:358045-358436 9.92e-01 100 chrVII:1000198-1000684 3.76e-01 100 chrXII:805448-807187 4.82e-01 100 chrII:466257-466493 3.34e-01 100 chrXIII:168574-169074 7.51e-09 20_[+2(8.93e-07)]_25_[-1(2.10e-09)] chrIX:210490-211154 5.50e-01 100 chrII:87888-88625 2.76e-03 19_[+3(6.27e-07)]_52 chrXI:67796-68541 8.14e-01 100 chrIII:33-1382 8.06e-01 100 chrXI:589842-590181 4.00e-01 100 chrXV:976173-976819 1.24e-07 9_[-1(5.51e-10)]_62 chrXII:459582-460746 5.34e-01 100 chrIX:336079-336640 2.55e-05 48_[+1(6.48e-08)]_23 chrII:405596-406228 3.11e-11 15_[+2(8.30e-07)]_8_[-1(6.07e-12)]_\ 22 chrV:469241-469718 4.55e-13 27_[+2(5.43e-10)]_10_[-1(7.51e-11)]_\ 8 chrXIII:195891-196426 6.32e-06 36_[-2(7.84e-09)]_38 chrXVI:678593-679373 3.88e-01 100 chrIV:975916-976735 4.31e-01 100 chrXIII:807678-808555 9.97e-01 100 chrXIII:5300-5810 8.93e-01 100 chrVII:73660-74196 1.00e-02 60_[+2(4.67e-06)]_14 chrI:180909-181507 2.88e-10 62_[-3(2.44e-13)]_9 chrV:101849-102768 3.92e-01 100 chrIV:1305372-1305946 1.61e-18 20_[+2(6.31e-11)]_23_[-3(3.97e-14)]_\ 2 chrIX:324132-324621 3.22e-02 22_[-2(2.90e-05)]_52 chrII:347384-347904 1.10e-16 8_[+2(3.29e-08)]_24_[-3(8.62e-14)]_\ 13 chrII:392530-396571 4.91e-01 100 chrV:441795-442666 1.95e-01 100 chrXIII:751280-751566 3.50e-02 100 chrXVI:559966-560515 9.33e-11 16_[+1(2.94e-10)]_28_[-2(3.29e-08)]_\ 1 chrII:237671-238774 9.51e-01 100 chrIV:1204217-1206763 3.20e-01 100 chrVIII:410922-412046 1.93e-01 100 chrXV:438435-438995 2.25e-07 35_[-1(1.10e-09)]_36 chrV:354683-355389 2.38e-01 100 chrXVI:572057-572566 1.21e-12 7_[+2(9.91e-09)]_7_[-1(1.07e-11)]_\ 31 chrXVI:645232-646311 9.99e-01 100 chrIV:1075274-1075763 1.66e-10 12_[+1(6.66e-11)]_9_[-2(6.25e-06)]_\ 24 chrXII:708076-711163 1.01e-01 100 chrVIII:174997-175838 9.11e-01 100 chrXII:673073-674405 5.86e-01 100 chrVIII:451168-453030 5.47e-01 100 chrIV:835738-836259 1.85e-01 100 chrIX:370156-370640 2.29e-01 100 chrIV:116267-118880 4.14e-01 100 chrX:607793-607893 9.24e-01 100 chrVII:310488-312276 9.64e-01 100 chrXV:251440-255086 6.24e-01 100 chrXIV:442783-444799 5.28e-01 100 chrVIII:145764-146458 9.78e-01 100 chrXI:665714-666808 7.50e-01 100 chrXV:1-1001 8.36e-01 100 chrVII:535445-535813 9.89e-02 47_[+3(8.30e-05)]_24 chrXIII:886993-889292 2.29e-01 100 chrVII:405256-405814 5.72e-08 18_[-1(6.07e-12)]_53 chrIII:114130-114807 7.82e-01 100 chrIX:394557-395313 6.14e-01 100 chrX:396388-396488 5.75e-01 100 chrXIII:480396-480894 1.53e-14 34_[+1(4.52e-12)]_9_[-2(8.82e-09)]_\ 2 chrXIII:67606-68076 7.13e-01 100 chrIII:82194-82817 1.03e-08 15_[+1(1.86e-11)]_56 chrIII:14114-16988 1.07e-01 100 chrXIII:290533-291199 1.66e-08 18_[-1(1.86e-11)]_53 chrXIV:6511-7174 8.93e-01 100 chrVII:319588-320140 5.22e-04 [-1(1.87e-07)]_71 chrXIII:499062-501400 8.23e-01 100 chrX:172719-172819 9.08e-01 100 chrIV:434004-434558 2.50e-07 41_[+1(5.89e-11)]_30 chrXIII:504659-505263 2.88e-10 63_[-3(2.44e-13)]_8 chrVIII:296771-297275 4.83e-01 100 chrVII:648750-649915 8.52e-01 100 chrXV:91886-94821 9.91e-01 100 chrXI:140740-143090 3.53e-01 100 chrXIII:605654-606028 7.27e-01 100 chrVII:23817-25816 8.40e-01 100 chrVII:555085-558053 1.91e-01 100 chrVII:323491-324626 4.72e-01 100 chrXV:226455-226924 1.83e-05 16_[-2(9.91e-09)]_58 chrX:650609-650709 4.06e-01 100 chrX:538353-538453 1.46e-11 29_[+2(9.60e-07)]_8_[-1(8.47e-11)]_\ 8 chrXII:366016-366578 1.90e-02 100 chrXIV:413532-416480 7.38e-01 100 chrIV:359339-359893 3.89e-10 10_[+2(5.45e-08)]_32_[-1(1.10e-09)]_\ 3 chrVII:110401-110934 1.34e-06 16_[+1(1.87e-07)]_8_[-2(2.85e-06)]_\ 21 chrXII:1028811-1030241 2.78e-01 100 chrVII:700392-701299 9.91e-01 100 chrII:159780-160077 3.42e-01 100 chrV:303883-307515 9.75e-01 100 chrIX:325532-326078 2.50e-07 27_[-1(5.89e-11)]_44 chrVII:930760-931231 1.21e-12 16_[+1(1.07e-11)]_7_[-2(9.91e-09)]_\ 22 chrXIII:549823-553287 9.84e-01 100 chrIV:1080445-1081037 6.62e-01 100 chrVIII:466755-467273 2.05e-11 25_[+2(8.00e-08)]_8_[-1(2.99e-09)]_\ 12 chrIV:321620-321976 7.97e-01 100 chrVII:316529-317388 6.62e-02 100 chrXII:628155-628664 4.65e-06 23_[+2(1.11e-08)]_51 chrII:167125-169697 3.93e-01 100 chrXIV:575067-577512 4.43e-01 100 chrVI:191292-191815 1.60e-09 14_[+3(2.08e-12)]_57 chrXII:728188-728569 4.58e-02 33_[-3(1.70e-05)]_38 chrII:477051-477784 3.17e-02 100 chrVII:726414-728261 7.33e-01 100 chrXIII:23669-26001 7.67e-01 100 chrV:18111-19200 3.63e-01 100 chrVII:363949-364447 9.98e-01 100 chrII:181322-181674 9.96e-01 100 chrI:182350-182791 2.15e-19 6_[+3(3.09e-15)]_22_[-2(6.31e-11)]_\ 17 chrXV:671057-671474 1.66e-01 100 chrIV:465112-465737 7.64e-01 100 chrXII:84076-84460 4.81e-01 100 chrVIII:125921-127809 9.97e-01 100 chrIV:341908-342165 4.65e-01 100 chrII:135981-136351 2.03e-02 35_[+1(9.91e-05)]_36 chrIV:802541-803030 6.23e-12 4_[+1(1.62e-11)]_8_[-2(8.79e-08)]_\ 33 chrXIII:768168-768655 1.76e-15 16_[+1(5.21e-11)]_9_[-2(4.49e-12)]_\ 20 chrXII:793691-797423 5.83e-01 100 chrXIII:352065-352616 4.49e-06 42_[-1(2.94e-10)]_29 chrIV:220926-222365 1.84e-01 100 chrXI:313004-313673 5.24e-01 100 chrXII:920391-922810 7.35e-02 100 chrIII:127505-127921 3.58e-05 52_[+2(4.83e-09)]_22 chrVI:167248-167692 9.88e-09 16_[+2(8.93e-07)]_25_[-1(2.10e-09)]_\ 4 chrVIII:388656-389212 1.40e-06 17_[+1(1.20e-10)]_54 chrXV:159170-160790 3.15e-02 100 chrIV:306177-310237 2.23e-01 100 chrXVI:435677-436201 3.93e-09 12_[+1(2.22e-08)]_8_[-2(1.81e-07)]_\ 25 chrXV:903863-904648 3.18e-01 100 chrXV:832186-832859 3.14e-02 100 chrVII:371170-371514 4.67e-02 50_[+3(9.60e-05)]_21 chrXII:201508-202821 5.75e-01 100 chrII:350619-351157 3.16e-07 22_[-1(1.62e-11)]_49 chrXV:779661-781014 5.89e-01 100 chrVII:878395-879055 1.26e-05 43_[+1(3.86e-09)]_28 chrXV:231925-232479 4.53e-02 100 chrXV:274438-274986 3.29e-07 10_[+2(4.36e-11)]_64 chrIX:388161-388978 9.09e-02 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************