Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.020361
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.059717
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.076794
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.013284
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.065321
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background
Finished invoke:
  name: bg  status: 0  time: 0.016181
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 986.230259
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 73.583744
Invoking:
  centrimo -seqlen 483 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.152098
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.463182
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background -primary KTGGCCBAGTBGGTWRAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.546359
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background -primary SGGRATCGAACCSVGGACCTY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.602628
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background -primary GATTWGAAATCTKTTGSGCTTYSMCYGCGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.34898
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background -primary ARAAADA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.572899
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background -primary TAGTGGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.292927
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background -primary CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.329112
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background -primary AASAAGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.395429
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.303862
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background -primary CGCCASAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.307214
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background -primary AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.251612
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background -primary AGATCKG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.277701
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background -primary CCRTGGAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.275183
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background -primary ASACCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.513357
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background --motif KTGGCCBAGTBGGTWRAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.421141
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background --motif SGGRATCGAACCSVGGACCTY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.423421
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background --motif GATTWGAAATCTKTTGSGCTTYSMCYGCGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.429307
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background --motif ARAAADA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.290996
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background --motif TAGTGGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.316038
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background --motif CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.303616
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background --motif AASAAGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.30678
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.316351
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background --motif CGCCASAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.326145
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background --motif AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.313326
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background --motif AGATCKG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.305911
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background --motif CCRTGGAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.316693
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background --motif ASACCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.289833
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.159568
Done