******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:326570-327066 1.0000 100 chrVIII:174989-175960 1.0000 100 chrXIV:739289-739842 1.0000 100 chrVII:110432-110924 1.0000 100 chrXI:208450-209157 1.0000 100 chrI:141584-143690 1.0000 100 chrIV:1352281-1352728 1.0000 100 chrXVI:819130-819901 1.0000 100 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1.0000 100 chrVIII:466788-467263 1.0000 100 chrXV:832199-832926 1.0000 100 chrXV:841383-842972 1.0000 100 chrIV:1016959-1017504 1.0000 100 chrXVI:699912-700708 1.0000 100 chrXII:261284-264168 1.0000 100 chrXV:670882-671579 1.0000 100 chrXIII:837732-838231 1.0000 100 chrXV:619198-624659 1.0000 100 chrVIII:401042-401309 1.0000 100 chrVII:400756-401766 1.0000 100 chrIX:131824-132101 1.0000 100 chrVIII:388673-389205 1.0000 100 chrV:406674-409502 1.0000 100 chrXV:903726-904693 1.0000 100 chrII:347414-347915 1.0000 100 chrII:87874-88614 1.0000 100 chrX:58716-58816 1.0000 100 chrXIII:625846-626939 1.0000 100 chrVIII:554112-554514 1.0000 100 chrVII:533617-535218 1.0000 100 chrVIII:381439-383326 1.0000 100 chrV:430963-431563 1.0000 100 chrVIII:451121-453059 1.0000 100 chrXIII:752968-754996 1.0000 100 chrXVI:377924-378999 1.0000 100 chrV:176881-177434 1.0000 100 chrVIII:16884-18154 1.0000 100 chrVI:162015-162405 1.0000 100 chrIV:619693-620227 1.0000 100 chrIX:183299-183715 1.0000 100 chrXIV:442817-444809 1.0000 100 chrIX:382063-382667 1.0000 100 chrXV:710012-710562 1.0000 100 chrX:704705-704805 1.0000 100 chrXII:489299-489602 1.0000 100 chrXIV:413537-416610 1.0000 100 chrIV:1081266-1081433 1.0000 100 chrIII:227779-228208 1.0000 100 chrXVI:502451-503211 1.0000 100 chrXI:517136-517512 1.0000 100 chrVIII:132832-133350 1.0000 100 chrX:90020-90120 1.0000 100 chrXVI:880020-880586 1.0000 100 chrVI:269532-270160 1.0000 100 chrXIV:715646-717106 1.0000 100 chrXVI:642262-643376 1.0000 100 chrXV:854006-854427 1.0000 100 chrVII:774158-774644 1.0000 100 chrIX:370231-370626 1.0000 100 chrII:680300-682277 1.0000 100 chrVII:397942-400179 1.0000 100 chrXIII:296734-298900 1.0000 100 chrXIV:575056-577517 1.0000 100 chrXIV:493300-495742 1.0000 100 chrX:531604-531704 1.0000 100 chrXIII:768173-768624 1.0000 100 chrV:51801-53281 1.0000 100 chrI:138888-139346 1.0000 100 chrIV:358054-358452 1.0000 100 chrX:464442-464542 1.0000 100 chrIV:1012255-1013969 1.0000 100 chrIV:449258-450067 1.0000 100 chrXIII:797956-798193 1.0000 100 chrIX:231227-232433 1.0000 100 chrXIII:407942-408894 1.0000 100 chrVII:287161-287689 1.0000 100 chrXV:252810-255037 1.0000 100 chrXI:382165-382487 1.0000 100 chrII:478944-479453 1.0000 100 chrXIII:195924-196412 1.0000 100 chrV:491014-491915 1.0000 100 chrXV:1003923-1004989 1.0000 100 chrVII:436892-443071 1.0000 100 chrIV:555370-556657 1.0000 100 chrXI:163249-164575 1.0000 100 chrIX:438796-439887 1.0000 100 chrV:61027-62152 1.0000 100 chrXII:264567-265301 1.0000 100 chrXIII:290600-291145 1.0000 100 chrX:523732-523832 1.0000 100 chrIX:394567-395175 1.0000 100 chrIII:1-1503 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.296 C 0.204 G 0.204 T 0.296 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MIG2/background): A 0.307 C 0.193 G 0.193 T 0.307 ******************************************************************************** ******************************************************************************** MOTIF KTGGCCBAGTBGGTWRAGSS MEME-1 width = 20 sites = 81 llr = 1313 E-value = 2.9e-233 ******************************************************************************** -------------------------------------------------------------------------------- Motif KTGGCCBAGTBGGTWRAGSS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:2:::1a1::::16651:: pos.-specific C ::::864:::2::1::2:64 probability G 4:8a:22:9:3a71:32846 matrix T 4a::223::a4:374111:: bits 2.4 * * 2.1 * * 1.9 * * 1.7 * * *** * Relative 1.4 **** *** * ** Entropy 1.2 **** *** ** *** (23.4 bits) 0.9 **** *** ** *** 0.7 ***** *** ** * *** 0.5 ****** *** ***** *** 0.2 ******************** 0.0 -------------------- Multilevel GTGGCCCAGTTGGTAAAGCG consensus T A TT G T TG GC sequence G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGCCBAGTBGGTWRAGSS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chrIX:183299-183715 - 31 8.16e-11 TCCTGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrV:443066-443498 - 18 8.16e-11 ATTTGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrVII:738856-739470 + 15 8.16e-11 AATAGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXII:1051917-1052349 - 36 8.16e-11 TCATGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXII:734600-734977 + 70 8.16e-11 GTTTGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXIV:602100-602539 + 49 8.16e-11 CAATGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXIV:569667-570152 - 56 8.16e-11 CAGTGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXVI:819130-819901 + 70 8.16e-11 GAATGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrVI:191334-191798 - 72 1.88e-10 TCTGTCCCA GTGGCCGAGTGGTTAAGGCG ATGCCCTGCT chrIV:1150662-1151190 - 40 1.88e-10 TTCAGTCCCA GTGGCCGAGTGGTTAAGGCG ATGCCTGCTA chrVIII:132832-133350 - 41 3.96e-10 AAGTGGCAAC TTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrI:182380-182769 - 54 3.96e-10 TTTTGGCAAC TTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:437572-438008 + 38 3.96e-10 GTAAGGCAAC TTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXII:167759-168234 - 54 3.96e-10 ATATGGCAAC TTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:980788-981250 - 61 3.96e-10 TTGAGGCAAC TTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXIII:768173-768624 - 68 4.66e-10 AAATGGGCGT GTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrVII:774158-774644 + 4 4.66e-10 CGT GTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXVI:856750-857155 + 6 4.66e-10 GGCGT GTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXI:219659-220097 + 73 4.66e-10 AATAGGGCGT GTGGCGTAGTCGGTAGCGCG CTCCCTTA chrXII:656689-657213 - 80 4.66e-10 T GTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrX:197197-197297 - 9 4.66e-10 ATTAGGGCGT GTGGCGTAGTCGGTAGCGCG CTCCCTTA chrX:617716-617816 + 37 1.23e-09 CAATGGGAGT TTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXII:731909-732339 + 22 1.23e-09 CAATGGGAGT TTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXV:854006-854427 - 68 1.64e-09 ATCAGGGCAC ATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrVII:794231-794591 + 62 1.64e-09 TTGCGGGCAC ATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrXIV:560530-560990 - 30 2.19e-09 ACGGGCTTCT ATGGCCAAGTTGGTAAGGCG CCACACTAGT chrVII:115269-115790 + 15 2.19e-09 CTCATCCTTG TTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXII:875067-875645 + 76 2.19e-09 CTCATCCTTG TTAGCTCAGTTGGTAGAGCG TTCGG chrXV:353909-354303 - 32 2.19e-09 TACTGCTTCT ATGGCCAAGTTGGTAAGGCG CCACACTAGT chrII:266197-266648 + 12 2.19e-09 AACTGCTTCT ATGGCCAAGTTGGTAAGGCG CCACACTAGT chrIII:227779-228208 + 5 2.50e-09 CACT ATGGCCGAGTGGTTAAGGCG AGAGACTCGA chrV:288202-288738 - 79 2.50e-09 CT ATGGCCGAGTGGTTAAGGCG ACAGACTTGA chrVI:137257-137897 - 7 5.49e-09 GACTGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGA chrXII:975787-976269 - 53 5.49e-09 AAAAGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXVI:810460-810880 + 62 5.49e-09 TTGCGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrX:414781-414881 + 16 6.19e-09 ATTAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:185504-185962 - 78 6.19e-09 TTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrXIII:480399-480891 - 73 6.19e-09 TAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrIX:300015-300498 - 69 6.19e-09 AATAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrV:435607-436026 - 33 6.19e-09 AAGAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrIV:1352281-1352728 - 59 6.19e-09 AATAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrXII:962800-963326 - 17 7.88e-09 CGACGGAGGG TTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrIV:519563-519911 + 62 7.88e-09 TTACGGAGGG TTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrX:424289-424389 - 25 7.88e-09 AGATGGAGGG TTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXI:83976-84427 + 63 7.88e-09 GTATGGAGGG TTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrIV:1095151-1095672 - 75 1.54e-08 GCGGAC TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXVI:560003-560477 - 74 1.54e-08 AGCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVIII:358285-358749 - 77 1.54e-08 GGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVIII:237746-238136 - 23 1.54e-08 GTAAGCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXVI:622345-622835 - 66 1.54e-08 ATATGCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrII:36174-36596 + 69 1.54e-08 GTAAGCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrV:438501-439010 + 1 1.72e-08 . GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrX:378161-378261 + 50 1.72e-08 AATAGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:823283-823699 + 47 1.72e-08 GAGTGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:412135-412580 - 35 1.72e-08 AACTGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrV:469266-469690 + 35 1.72e-08 AATTGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXII:687654-688160 - 50 1.72e-08 AATAGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXI:307908-308418 - 79 1.72e-08 TC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXI:379465-379918 + 45 1.72e-08 AATAGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:572701-573185 - 37 7.25e-08 GACAGCTTCA GTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrIV:1175597-1176099 + 37 7.25e-08 CAAAGCTTCA GTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrX:390836-390936 - 56 7.25e-08 TAGTGCTTCA GTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrX:233709-233809 + 50 7.90e-08 CTTGTTCCTC GTGGCCCAATGGTCACGGCG TCTGGCTACG chrXI:490782-491221 + 23 7.90e-08 CTTGTTCCTC GTGGCCCAATGGTCACGGCG TCTGGCTACG chrV:492195-492699 - 2 7.90e-08 CCTATTCCTC GTGGCCCAATGGTCACGGCG T chrXII:605148-605610 - 78 1.30e-07 CGT GTAGCTCAGTGGTTAGAGCT TCGTGCTTAT chrXIII:837732-838231 + 3 2.93e-07 CG GTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrXIII:168611-169063 + 14 2.93e-07 GTCACTCTCG GTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrVI:210460-210878 - 63 2.93e-07 ACGACTCTCG GTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrXII:11026-11996 - 72 2.93e-07 GGGTAAGCG GTAGTGGAGTTGGATATGGG TAATTGGAGG chrXV:287912-288456 + 64 2.93e-07 GCTTCTCTCG GTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrVI:167237-167666 + 42 2.93e-07 ACGACTCTCG GTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrVI:162015-162405 + 74 4.97e-07 ACAAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTG chrX:396550-396650 - 21 4.97e-07 GTAAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXVI:860188-860671 + 6 4.97e-07 CGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVII:930837-931217 - 21 4.97e-07 GTAAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXV:226452-226883 - 39 4.97e-07 TTCAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXIII:183783-184187 - 8 4.97e-07 GATCGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTG chrXIV:499199-502925 - 42 2.51e-06 AAAAAGGAGT GTAGAGTAGTTGGATAATGG TAAAAGAACG chrXI:430487-432949 + 56 5.11e-06 GTTTCCATTC TCAGCCCAATTGGCAACGGA GAGAGCGTAG chrX:538380-538480 + 45 1.16e-05 GTTGGTTCCG TTGGCGTAATGGTAACGCGT CTCCCTCCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGCCBAGTBGGTWRAGSS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIX:183299-183715 8.2e-11 30_[-1]_50 chrV:443066-443498 8.2e-11 17_[-1]_63 chrVII:738856-739470 8.2e-11 14_[+1]_66 chrXII:1051917-1052349 8.2e-11 35_[-1]_45 chrXII:734600-734977 8.2e-11 69_[+1]_11 chrXIV:602100-602539 8.2e-11 48_[+1]_32 chrXIV:569667-570152 8.2e-11 55_[-1]_25 chrXVI:819130-819901 8.2e-11 69_[+1]_11 chrVI:191334-191798 1.9e-10 71_[-1]_9 chrIV:1150662-1151190 1.9e-10 39_[-1]_41 chrVIII:132832-133350 4e-10 40_[-1]_40 chrI:182380-182769 4e-10 53_[-1]_27 chrIV:437572-438008 4e-10 37_[+1]_43 chrXII:167759-168234 4e-10 53_[-1]_27 chrIV:980788-981250 4e-10 60_[-1]_20 chrXIII:768173-768624 4.7e-10 67_[-1]_13 chrVII:774158-774644 4.7e-10 3_[+1]_77 chrXVI:856750-857155 4.7e-10 5_[+1]_75 chrXI:219659-220097 4.7e-10 72_[+1]_8 chrXII:656689-657213 4.7e-10 79_[-1]_1 chrX:197197-197297 4.7e-10 8_[-1]_72 chrX:617716-617816 1.2e-09 36_[+1]_44 chrXII:731909-732339 1.2e-09 21_[+1]_59 chrXV:854006-854427 1.6e-09 67_[-1]_13 chrVII:794231-794591 1.6e-09 61_[+1]_19 chrXIV:560530-560990 2.2e-09 29_[-1]_51 chrVII:115269-115790 2.2e-09 14_[+1]_66 chrXII:875067-875645 2.2e-09 75_[+1]_5 chrXV:353909-354303 2.2e-09 31_[-1]_49 chrII:266197-266648 2.2e-09 11_[+1]_69 chrIII:227779-228208 2.5e-09 4_[+1]_76 chrV:288202-288738 2.5e-09 78_[-1]_2 chrVI:137257-137897 5.5e-09 6_[-1]_74 chrXII:975787-976269 5.5e-09 52_[-1]_28 chrXVI:810460-810880 5.5e-09 61_[+1]_19 chrX:414781-414881 6.2e-09 15_[+1]_65 chrVII:185504-185962 6.2e-09 77_[-1]_3 chrXIII:480399-480891 6.2e-09 72_[-1]_8 chrIX:300015-300498 6.2e-09 68_[-1]_12 chrV:435607-436026 6.2e-09 32_[-1]_48 chrIV:1352281-1352728 6.2e-09 58_[-1]_22 chrXII:962800-963326 7.9e-09 16_[-1]_64 chrIV:519563-519911 7.9e-09 61_[+1]_19 chrX:424289-424389 7.9e-09 24_[-1]_56 chrXI:83976-84427 7.9e-09 62_[+1]_18 chrIV:1095151-1095672 1.5e-08 74_[-1]_6 chrXVI:560003-560477 1.5e-08 73_[-1]_7 chrVIII:358285-358749 1.5e-08 76_[-1]_4 chrVIII:237746-238136 1.5e-08 22_[-1]_58 chrXVI:622345-622835 1.5e-08 65_[-1]_15 chrII:36174-36596 1.5e-08 68_[+1]_12 chrV:438501-439010 1.7e-08 [+1]_80 chrX:378161-378261 1.7e-08 49_[+1]_31 chrVII:823283-823699 1.7e-08 46_[+1]_34 chrVII:412135-412580 1.7e-08 34_[-1]_46 chrV:469266-469690 1.7e-08 34_[+1]_46 chrXII:687654-688160 1.7e-08 49_[-1]_31 chrXI:307908-308418 1.7e-08 78_[-1]_2 chrXI:379465-379918 1.7e-08 44_[+1]_36 chrXIII:572701-573185 7.3e-08 36_[-1]_44 chrIV:1175597-1176099 7.3e-08 36_[+1]_44 chrX:390836-390936 7.3e-08 55_[-1]_25 chrX:233709-233809 7.9e-08 49_[+1]_31 chrXI:490782-491221 7.9e-08 22_[+1]_58 chrV:492195-492699 7.9e-08 1_[-1]_79 chrXII:605148-605610 1.3e-07 77_[-1]_3 chrXIII:837732-838231 2.9e-07 2_[+1]_78 chrXIII:168611-169063 2.9e-07 13_[+1]_67 chrVI:210460-210878 2.9e-07 62_[-1]_18 chrXII:11026-11996 2.9e-07 71_[-1]_9 chrXV:287912-288456 2.9e-07 63_[+1]_17 chrVI:167237-167666 2.9e-07 41_[+1]_39 chrVI:162015-162405 5e-07 73_[+1]_7 chrX:396550-396650 5e-07 20_[-1]_60 chrXVI:860188-860671 5e-07 5_[+1]_75 chrVII:930837-931217 5e-07 20_[-1]_60 chrXV:226452-226883 5e-07 38_[-1]_42 chrXIII:183783-184187 5e-07 7_[-1]_73 chrXIV:499199-502925 2.5e-06 41_[-1]_39 chrXI:430487-432949 5.1e-06 55_[+1]_25 chrX:538380-538480 1.2e-05 44_[+1]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGCCBAGTBGGTWRAGSS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KTGGCCBAGTBGGTWRAGSS width=20 seqs=81 chrIX:183299-183715 ( 31) TTGGCCCAGTTGGTTAAGGC 1 chrV:443066-443498 ( 18) TTGGCCCAGTTGGTTAAGGC 1 chrVII:738856-739470 ( 15) TTGGCCCAGTTGGTTAAGGC 1 chrXII:1051917-1052349 ( 36) TTGGCCCAGTTGGTTAAGGC 1 chrXII:734600-734977 ( 70) TTGGCCCAGTTGGTTAAGGC 1 chrXIV:602100-602539 ( 49) TTGGCCCAGTTGGTTAAGGC 1 chrXIV:569667-570152 ( 56) TTGGCCCAGTTGGTTAAGGC 1 chrXVI:819130-819901 ( 70) TTGGCCCAGTTGGTTAAGGC 1 chrVI:191334-191798 ( 72) GTGGCCGAGTGGTTAAGGCG 1 chrIV:1150662-1151190 ( 40) GTGGCCGAGTGGTTAAGGCG 1 chrVIII:132832-133350 ( 41) TTGGCCGAGTGGTTAAGGCG 1 chrI:182380-182769 ( 54) TTGGCCGAGTGGTTAAGGCG 1 chrIV:437572-438008 ( 38) TTGGCCGAGTGGTTAAGGCG 1 chrXII:167759-168234 ( 54) TTGGCCGAGTGGTTAAGGCG 1 chrIV:980788-981250 ( 61) TTGGCCGAGTGGTTAAGGCG 1 chrXIII:768173-768624 ( 68) GTGGCGTAGTCGGTAGCGCG 1 chrVII:774158-774644 ( 4) GTGGCGTAGTCGGTAGCGCG 1 chrXVI:856750-857155 ( 6) GTGGCGTAGTCGGTAGCGCG 1 chrXI:219659-220097 ( 73) GTGGCGTAGTCGGTAGCGCG 1 chrXII:656689-657213 ( 80) GTGGCGTAGTCGGTAGCGCG 1 chrX:197197-197297 ( 9) GTGGCGTAGTCGGTAGCGCG 1 chrX:617716-617816 ( 37) TTGGCCGAGTGGTTTAAGGC 1 chrXII:731909-732339 ( 22) TTGGCCGAGTGGTTTAAGGC 1 chrXV:854006-854427 ( 68) ATGGCGCAGTTGGTAGCGCG 1 chrVII:794231-794591 ( 62) ATGGCGCAGTTGGTAGCGCG 1 chrXIV:560530-560990 ( 30) ATGGCCAAGTTGGTAAGGCG 1 chrVII:115269-115790 ( 15) TTAGCTCAGTTGGTAGAGCG 1 chrXII:875067-875645 ( 76) TTAGCTCAGTTGGTAGAGCG 1 chrXV:353909-354303 ( 32) ATGGCCAAGTTGGTAAGGCG 1 chrII:266197-266648 ( 12) ATGGCCAAGTTGGTAAGGCG 1 chrIII:227779-228208 ( 5) ATGGCCGAGTGGTTAAGGCG 1 chrV:288202-288738 ( 79) ATGGCCGAGTGGTTAAGGCG 1 chrVI:137257-137897 ( 7) ATGGCCAAGTTGGTTAAGGC 1 chrXII:975787-976269 ( 53) ATGGCCAAGTTGGTTAAGGC 1 chrXVI:810460-810880 ( 62) ATGGCCAAGTTGGTTAAGGC 1 chrX:414781-414881 ( 16) TTGGCGCAATCGGTAGCGCG 1 chrVII:185504-185962 ( 78) TTGGCGCAATCGGTAGCGCG 1 chrXIII:480399-480891 ( 73) TTGGCGCAATCGGTAGCGCG 1 chrIX:300015-300498 ( 69) TTGGCGCAATCGGTAGCGCG 1 chrV:435607-436026 ( 33) TTGGCGCAATCGGTAGCGCG 1 chrIV:1352281-1352728 ( 59) TTGGCGCAATCGGTAGCGCG 1 chrXII:962800-963326 ( 17) TTGGCCGAGTGGTCTAAGGC 1 chrIV:519563-519911 ( 62) TTGGCCGAGTGGTCTAAGGC 1 chrX:424289-424389 ( 25) TTGGCCGAGTGGTCTAAGGC 1 chrXI:83976-84427 ( 63) TTGGCCGAGTGGTCTAAGGC 1 chrIV:1095151-1095672 ( 75) TTAGCTCAGTTGGGAGAGCG 1 chrXVI:560003-560477 ( 74) TTAGCTCAGTTGGGAGAGCG 1 chrVIII:358285-358749 ( 77) TTAGCTCAGTTGGGAGAGCG 1 chrVIII:237746-238136 ( 23) TTAGCTCAGTTGGGAGAGCG 1 chrXVI:622345-622835 ( 66) TTAGCTCAGTTGGGAGAGCG 1 chrII:36174-36596 ( 69) TTAGCTCAGTTGGGAGAGCG 1 chrV:438501-439010 ( 1) GTGGTCTAGTCGGTTATGGC 1 chrX:378161-378261 ( 50) GTGGTCTAGTCGGTTATGGC 1 chrVII:823283-823699 ( 47) GTGGTCTAGTCGGTTATGGC 1 chrVII:412135-412580 ( 35) GTGGTCTAGTCGGTTATGGC 1 chrV:469266-469690 ( 35) GTGGTCTAGTCGGTTATGGC 1 chrXII:687654-688160 ( 50) GTGGTCTAGTCGGTTATGGC 1 chrXI:307908-308418 ( 79) GTGGTCTAGTCGGTTATGGC 1 chrXI:379465-379918 ( 45) GTGGTCTAGTCGGTTATGGC 1 chrXIII:572701-573185 ( 37) GTAGCTCAGTAGGAAGAGCG 1 chrIV:1175597-1176099 ( 37) GTAGCTCAGTAGGAAGAGCG 1 chrX:390836-390936 ( 56) GTAGCTCAGTAGGAAGAGCG 1 chrX:233709-233809 ( 50) GTGGCCCAATGGTCACGGCG 1 chrXI:490782-491221 ( 23) GTGGCCCAATGGTCACGGCG 1 chrV:492195-492699 ( 2) GTGGCCCAATGGTCACGGCG 1 chrXII:605148-605610 ( 78) GTAGCTCAGTGGTTAGAGCT 1 chrXIII:837732-838231 ( 3) GTAGCCAAGTTGGTTTAAGG 1 chrXIII:168611-169063 ( 14) GTAGCCAAGTTGGTTTAAGG 1 chrVI:210460-210878 ( 63) GTAGCCAAGTTGGTTTAAGG 1 chrXII:11026-11996 ( 72) GTAGTGGAGTTGGATATGGG 1 chrXV:287912-288456 ( 64) GTAGCCAAGTTGGTTTAAGG 1 chrVI:167237-167666 ( 42) GTAGCCAAGTTGGTTTAAGG 1 chrVI:162015-162405 ( 74) GTGGTTTAGTGGTAAAATCC 1 chrX:396550-396650 ( 21) GTGGTTTAGTGGTAAAATCC 1 chrXVI:860188-860671 ( 6) GTGGTTTAGTGGTAAAATCC 1 chrVII:930837-931217 ( 21) GTGGTTTAGTGGTAAAATCC 1 chrXV:226452-226883 ( 39) GTGGTTTAGTGGTAAAATCC 1 chrXIII:183783-184187 ( 8) GTGGTTTAGTGGTAAAATCC 1 chrXIV:499199-502925 ( 42) GTAGAGTAGTTGGATAATGG 1 chrXI:430487-432949 ( 56) TCAGCCCAATTGGCAACGGA 1 chrX:538380-538480 ( 45) TTGGCGTAATGGTAACGCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGCCBAGTBGGTWRAGSS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 48600 bayes= 11.2901 E= 2.9e-233 -131 -1298 120 49 -1298 -396 -1298 168 -32 -1298 197 -1298 -1298 -1298 237 -1298 -463 206 -1298 -73 -1298 156 12 -47 -118 103 3 -18 170 -1298 -1298 -1298 -118 -1298 216 -1298 -1298 -1298 -1298 170 -305 36 74 36 -1298 -1298 237 -1298 -1298 -1298 182 6 -105 -96 -138 114 98 -1298 -1298 36 89 -196 74 -231 72 -6 3 -147 -231 -396 212 -183 -1298 159 112 -1298 -463 99 159 -364 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGCCBAGTBGGTWRAGSS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 81 E= 2.9e-233 0.123457 0.000000 0.444444 0.432099 0.000000 0.012346 0.000000 0.987654 0.246914 0.000000 0.753086 0.000000 0.000000 0.000000 1.000000 0.000000 0.012346 0.802469 0.000000 0.185185 0.000000 0.567901 0.209877 0.222222 0.135802 0.395062 0.197531 0.271605 1.000000 0.000000 0.000000 0.000000 0.135802 0.000000 0.864198 0.000000 0.000000 0.000000 0.000000 1.000000 0.037037 0.246914 0.320988 0.395062 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.679012 0.320988 0.148148 0.098765 0.074074 0.679012 0.604938 0.000000 0.000000 0.395062 0.567901 0.049383 0.320988 0.061728 0.506173 0.185185 0.197531 0.111111 0.061728 0.012346 0.839506 0.086420 0.000000 0.580247 0.419753 0.000000 0.012346 0.382716 0.580247 0.024691 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGCCBAGTBGGTWRAGSS MEME-1 regular expression -------------------------------------------------------------------------------- [GT]T[GA]GC[CTG][CT]AGT[TGC]G[GT]T[AT][AG]AG[CG][GC] -------------------------------------------------------------------------------- Time 353.54 secs. ******************************************************************************** ******************************************************************************** MOTIF SGGRATCGAACCSVGGACCTY MEME-2 width = 21 sites = 77 llr = 1252 E-value = 2.4e-216 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGGRATCGAACCSVGGACCTY MEME-2 Description -------------------------------------------------------------------------------- Simplified A 13:55:::aa:112127:::1 pos.-specific C 31::2:7:::a7542::7735 probability G 66a52::a:::134581:111 matrix T :1::1a3::::21:3:23274 bits 2.4 * * 2.1 * * * 1.9 * * * 1.7 * ** * Relative 1.4 * * **** * Entropy 1.2 * ****** * * (23.5 bits) 0.9 * ** ****** * ** 0.7 **** ******** ***** 0.5 **** **************** 0.2 ********************* 0.0 --------------------- Multilevel GGGAATCGAACCCCGGACCTC consensus CA G T TGGTA T CT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRATCGAACCSVGGACCTY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIII:123367-123824 + 42 7.85e-13 GGGGCGAGCC GGGACTCGAACCCGGGACCTC CCGCACCCTA chrIV:1075310-1075741 + 7 7.41e-11 CCAACC GAGGATCGAACTCGGGACCTT TGCCGTGTGA chrVIII:475499-475905 + 64 7.41e-11 TGTTCCAACC GAGGATCGAACTCGGGACCTT TGCCGTGTGA chrXV:854006-854427 + 31 8.76e-11 TGGACGCAAC CGGAATCGAACCGATGACCTC TTCCTTGCAA chrI:166045-166607 - 33 8.76e-11 TGGACGCAAC CGGAATCGAACCGATGACCTC TTCCTTGCAA chrXVI:880020-880586 + 53 1.91e-10 TGGTCTCTAG CGGGATCGAACCGCTGATCCC CGCGTTATTA chrX:414781-414881 - 52 1.91e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrVI:226440-226945 + 56 1.91e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrVII:185504-185962 + 41 1.91e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrII:197299-197867 - 4 1.91e-10 TGGTCTCTAG CGGGATCGAACCGCTGATCCC CGC chrVII:738856-739470 - 52 1.91e-10 TGGTCTCTAG CGGGATCGAACCGCTGATCCC CGCGTTATTA chrXIII:480399-480891 + 36 1.91e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrIX:300015-300498 + 32 1.91e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrIV:667745-668239 + 75 1.91e-10 TGGTCTCTAG CGGGATCGAACCGCTGATCCC CGCGT chrXIV:569667-570152 + 18 1.91e-10 TGGTCTCTAG CGGGATCGAACCGCTGATCCC CGCGTTATTA chrIV:1352281-1352728 + 22 1.91e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrXIII:768173-768624 + 31 2.59e-10 TGGACGAGTC CGGAATCGAACCGGAGACCTC TCCCATGCTA chrVII:774158-774644 - 40 2.59e-10 TGGACGAGTC CGGAATCGAACCGGAGACCTC TCCCATGCTA chrXVI:856750-857155 - 42 2.59e-10 TGGACGAGTC CGGAATCGAACCGGAGACCTC TCCCATGCTA chrXII:656689-657213 + 43 2.59e-10 TGGACGAGTC CGGAATCGAACCGGAGACCTC TCCCATGCTA chrXIII:290600-291145 - 20 3.98e-10 CTCCGCTACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrV:176881-177434 - 33 3.98e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrVIII:388673-389205 + 14 3.98e-10 GGGGCGAGCT GGGAATTGAACCCAGGGCCTC TCGCATGCTT chrIV:1016959-1017504 + 36 3.98e-10 CTCCGAAGCG GGGAGTCGAACCCCGGTCTCC ACGGTGAGAA chrXIV:546964-547422 - 23 3.98e-10 GGGGCGAGCT GGGAATTGAACCCAGGGCCTC TCGCATGCTT chrXV:300863-301444 - 65 3.98e-10 GGGGCGAGCT GGGAATTGAACCCAGGGCCTC TCGCATGCTT chrX:115698-115798 + 49 3.98e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrII:644983-645396 - 69 3.98e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrXVI:209931-210482 + 46 3.98e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrVII:779433-779907 - 37 4.56e-10 TGAGCGGTAC GAGAATCGAACCCGTGTCCCC ACCTTGGAAG chrVII:115269-115790 - 74 1.51e-09 TCATAG GGGGCTCGAACCCCTGACATT TCGGTATCCT chrXVI:769004-769479 + 26 1.51e-09 CTCCTCATAG GGGGCTCGAACCCCTGACATT TCGGTATCCT chrIV:1095151-1095672 + 19 2.78e-09 TGCGAACTCT GTGGATCGAACACAGGACCTC CAGATATCTT chrXVI:560003-560477 + 18 2.78e-09 TGCGAATTCT GTGGATCGAACACAGGACCTC CAGATAACTT chrVIII:358285-358749 + 21 2.78e-09 TGCGAATTCT GTGGATCGAACACAGGACCTC CAGATAACTT chrXIII:352085-352601 - 47 2.78e-09 TGCGAATTCT GTGGATCGAACACAGGACCTC CAGATAACTT chrXVI:622345-622835 + 10 2.78e-09 GCGAATTCT GTGGATCGAACACAGGACCTC CAGATAACTT chrIV:488453-489149 + 56 3.14e-09 TGATCCAACC GAGGTTCGAACTCGGGATCTT CGCCGTGTAA chrII:326570-327066 + 34 3.14e-09 TGATCCAACC GAGGTTCGAACTCGGGATCTT CGCCGTGTAA chrX:531604-531704 - 6 3.98e-09 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGAT chrXVI:860188-860671 - 40 3.98e-09 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrV:438501-439010 - 38 6.25e-09 TGATTTCGCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrXIII:586397-586874 + 61 6.25e-09 TGATTTCGCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrV:469266-469690 - 72 6.25e-09 ATTTCGCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrXII:687654-688160 + 12 6.25e-09 TGATTTCGCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrXI:307908-308418 + 41 6.25e-09 TGATTTCGCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrII:266197-266648 - 48 1.64e-08 TGCTTCCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrIX:325544-326077 - 30 1.64e-08 TGCTTCCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrV:250107-250533 - 57 1.81e-08 AGGTCCTACC CGGATTCGAACCGGGGTTGTC CGGATCAAAA chrXIII:837732-838231 - 55 3.28e-08 TCTCCCGGGG GCGAGTCGAACGCCCGATCTC AAGATTTCGT chrXIII:168611-169063 - 66 3.28e-08 TCTCCCGGGG GCGAGTCGAACGCCCGATCTC AAGATTTCGT chrVI:210460-210878 + 10 3.28e-08 CTCCCGGGG GCGAGTCGAACGCCCGATCTC AAGATTTCGT chrXV:976188-976810 - 14 3.96e-08 TGCTCCAGGG GAGGTTCGAACTCTCGACCTT CAGATTATGA chrIV:1175597-1176099 - 73 3.96e-08 TCCAGGG GAGGTTCGAACTCTCGACCTT CAGATTATGA chrX:390836-390936 + 19 3.96e-08 TGCTCCAGGG GAGGTTCGAACTCTCGACCTT CAGATTATGA chrXIV:632428-632897 - 30 5.24e-08 CGACCCCAGT GAGGGTTGAACTCACGATCTT GCGATTAACA chrXII:975787-976269 + 15 5.24e-08 CGACCCCAGT GAGGGTTGAACTCACGATCTT GCGATTAACA chrVII:730960-731446 - 27 5.24e-08 CGACCCCAGT GAGGGTTGAACTCACGATCTT GCGATTAACA chrVIII:466788-467263 - 56 7.51e-08 TGCCACCTGC CAGAATTGAACTAGCGACCTT TGCATTACAA chrIX:324107-324577 + 21 1.62e-07 CTCCGCGACG GGGAATTGAACCCCGATCTGG CACGCGACAA chrX:541353-541453 - 25 1.62e-07 CTCCGCGACG GGGAATTGAACCCCGATCTGG CACGCGACAA chrXII:426917-427430 - 50 1.62e-07 CTCCGCGACG GGGAATTGAACCCCGATCTGG CACGCGACAA chrX:374186-374286 + 9 1.62e-07 CCGCGACG GGGAATTGAACCCCGATCTGG CACGCGACAA chrIX:336115-336630 + 37 1.62e-07 CTCCGCGACG GGGAATTGAACCCCGATCTGG CACGCGACAA chrXI:302722-303227 - 69 2.07e-07 TGAAACGGAC AGGAATTGAACCTGCAACCCT TCGATTGCAA chrXIII:379026-379620 + 40 2.07e-07 TGAAACGGAC AGGAATTGAACCTGCAACCCT TCGATTGCAA chrIV:619693-620227 + 69 2.63e-07 CTTCCCCGCC AGGACTTGAACCTGGAATCTT CTGGTTCGTA chrXI:490782-491221 - 59 2.63e-07 CTTCCCCGCC AGGACTTGAACCTGGAATCTT CTGGTTCGTA chrXII:374203-374674 - 9 2.63e-07 CTTCCCCGCC AGGACTTGAACCTGGAATCTT CTGGTTCG chrXVI:435651-436162 + 47 9.14e-07 AGCTCGCACT CAGGATCGAACTAAGGACCAA CAGATTTGCA chrII:347414-347915 + 49 1.89e-06 GTTGTCCGCG CGAGTTCGAACCTCGCATCCT TCAGTAATAT chrXV:710012-710562 - 5 3.28e-06 TAGCGCCGCT CGGTTTCGATCCGAGGACATC AGGG chrV:434386-434755 + 31 3.28e-06 TGCCATCTCC TAGAATCGAACCAGGGTTTCA TCGGCCACAA chrVII:110432-110924 + 7 3.28e-06 ATCTCC TAGAATCGAACCAGGGTTTCA TCGGCCACAA chrII:135939-136332 + 68 1.28e-05 GTAACGCACG GCGGGCCGAAAGTCGGACTTT ACCCCAGATT chrXII:728176-728609 + 68 1.80e-05 ATAAACCGTG GGGACCTGACCCAGTCATCCT CCCTGTGTTT chrXIII:701685-703310 - 15 6.43e-05 CAACACCACC GGAAACAGCACCAATGACTTC AGCAGTTGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRATCGAACCSVGGACCTY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123367-123824 7.8e-13 41_[+2]_38 chrIV:1075310-1075741 7.4e-11 6_[+2]_73 chrVIII:475499-475905 7.4e-11 63_[+2]_16 chrXV:854006-854427 8.8e-11 30_[+2]_49 chrI:166045-166607 8.8e-11 32_[-2]_47 chrXVI:880020-880586 1.9e-10 52_[+2]_27 chrX:414781-414881 1.9e-10 51_[-2]_28 chrVI:226440-226945 1.9e-10 55_[+2]_24 chrVII:185504-185962 1.9e-10 40_[+2]_39 chrII:197299-197867 1.9e-10 3_[-2]_76 chrVII:738856-739470 1.9e-10 51_[-2]_28 chrXIII:480399-480891 1.9e-10 35_[+2]_44 chrIX:300015-300498 1.9e-10 31_[+2]_48 chrIV:667745-668239 1.9e-10 74_[+2]_5 chrXIV:569667-570152 1.9e-10 17_[+2]_62 chrIV:1352281-1352728 1.9e-10 21_[+2]_58 chrXIII:768173-768624 2.6e-10 30_[+2]_49 chrVII:774158-774644 2.6e-10 39_[-2]_40 chrXVI:856750-857155 2.6e-10 41_[-2]_38 chrXII:656689-657213 2.6e-10 42_[+2]_37 chrXIII:290600-291145 4e-10 19_[-2]_60 chrV:176881-177434 4e-10 32_[-2]_47 chrVIII:388673-389205 4e-10 13_[+2]_66 chrIV:1016959-1017504 4e-10 35_[+2]_44 chrXIV:546964-547422 4e-10 22_[-2]_57 chrXV:300863-301444 4e-10 64_[-2]_15 chrX:115698-115798 4e-10 48_[+2]_31 chrII:644983-645396 4e-10 68_[-2]_11 chrXVI:209931-210482 4e-10 45_[+2]_34 chrVII:779433-779907 4.6e-10 36_[-2]_43 chrVII:115269-115790 1.5e-09 73_[-2]_6 chrXVI:769004-769479 1.5e-09 25_[+2]_54 chrIV:1095151-1095672 2.8e-09 18_[+2]_61 chrXVI:560003-560477 2.8e-09 17_[+2]_62 chrVIII:358285-358749 2.8e-09 20_[+2]_59 chrXIII:352085-352601 2.8e-09 46_[-2]_33 chrXVI:622345-622835 2.8e-09 9_[+2]_70 chrIV:488453-489149 3.1e-09 55_[+2]_24 chrII:326570-327066 3.1e-09 33_[+2]_46 chrX:531604-531704 4e-09 5_[-2]_74 chrXVI:860188-860671 4e-09 39_[-2]_40 chrV:438501-439010 6.3e-09 37_[-2]_42 chrXIII:586397-586874 6.3e-09 60_[+2]_19 chrV:469266-469690 6.3e-09 71_[-2]_8 chrXII:687654-688160 6.3e-09 11_[+2]_68 chrXI:307908-308418 6.3e-09 40_[+2]_39 chrII:266197-266648 1.6e-08 47_[-2]_32 chrIX:325544-326077 1.6e-08 29_[-2]_50 chrV:250107-250533 1.8e-08 56_[-2]_23 chrXIII:837732-838231 3.3e-08 54_[-2]_25 chrXIII:168611-169063 3.3e-08 65_[-2]_14 chrVI:210460-210878 3.3e-08 9_[+2]_70 chrXV:976188-976810 4e-08 13_[-2]_66 chrIV:1175597-1176099 4e-08 72_[-2]_7 chrX:390836-390936 4e-08 18_[+2]_61 chrXIV:632428-632897 5.2e-08 29_[-2]_50 chrXII:975787-976269 5.2e-08 14_[+2]_65 chrVII:730960-731446 5.2e-08 26_[-2]_53 chrVIII:466788-467263 7.5e-08 55_[-2]_24 chrIX:324107-324577 1.6e-07 20_[+2]_59 chrX:541353-541453 1.6e-07 24_[-2]_55 chrXII:426917-427430 1.6e-07 49_[-2]_30 chrX:374186-374286 1.6e-07 8_[+2]_71 chrIX:336115-336630 1.6e-07 36_[+2]_43 chrXI:302722-303227 2.1e-07 68_[-2]_11 chrXIII:379026-379620 2.1e-07 39_[+2]_40 chrIV:619693-620227 2.6e-07 68_[+2]_11 chrXI:490782-491221 2.6e-07 58_[-2]_21 chrXII:374203-374674 2.6e-07 8_[-2]_71 chrXVI:435651-436162 9.1e-07 46_[+2]_33 chrII:347414-347915 1.9e-06 48_[+2]_31 chrXV:710012-710562 3.3e-06 4_[-2]_75 chrV:434386-434755 3.3e-06 30_[+2]_49 chrVII:110432-110924 3.3e-06 6_[+2]_73 chrII:135939-136332 1.3e-05 67_[+2]_12 chrXII:728176-728609 1.8e-05 67_[+2]_12 chrXIII:701685-703310 6.4e-05 14_[-2]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRATCGAACCSVGGACCTY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGGRATCGAACCSVGGACCTY width=21 seqs=77 chrIII:123367-123824 ( 42) GGGACTCGAACCCGGGACCTC 1 chrIV:1075310-1075741 ( 7) GAGGATCGAACTCGGGACCTT 1 chrVIII:475499-475905 ( 64) GAGGATCGAACTCGGGACCTT 1 chrXV:854006-854427 ( 31) CGGAATCGAACCGATGACCTC 1 chrI:166045-166607 ( 33) CGGAATCGAACCGATGACCTC 1 chrXVI:880020-880586 ( 53) CGGGATCGAACCGCTGATCCC 1 chrX:414781-414881 ( 52) GGGGCTCGAACCCCTAACCTT 1 chrVI:226440-226945 ( 56) GGGGCTCGAACCCCTAACCTT 1 chrVII:185504-185962 ( 41) GGGGCTCGAACCCCTAACCTT 1 chrII:197299-197867 ( 4) CGGGATCGAACCGCTGATCCC 1 chrVII:738856-739470 ( 52) CGGGATCGAACCGCTGATCCC 1 chrXIII:480399-480891 ( 36) GGGGCTCGAACCCCTAACCTT 1 chrIX:300015-300498 ( 32) GGGGCTCGAACCCCTAACCTT 1 chrIV:667745-668239 ( 75) CGGGATCGAACCGCTGATCCC 1 chrXIV:569667-570152 ( 18) CGGGATCGAACCGCTGATCCC 1 chrIV:1352281-1352728 ( 22) GGGGCTCGAACCCCTAACCTT 1 chrXIII:768173-768624 ( 31) CGGAATCGAACCGGAGACCTC 1 chrVII:774158-774644 ( 40) CGGAATCGAACCGGAGACCTC 1 chrXVI:856750-857155 ( 42) CGGAATCGAACCGGAGACCTC 1 chrXII:656689-657213 ( 43) CGGAATCGAACCGGAGACCTC 1 chrXIII:290600-291145 ( 20) GGGAGTCGAACCCCGGTCTCC 1 chrV:176881-177434 ( 33) GGGAGTCGAACCCCGGTCTCC 1 chrVIII:388673-389205 ( 14) GGGAATTGAACCCAGGGCCTC 1 chrIV:1016959-1017504 ( 36) GGGAGTCGAACCCCGGTCTCC 1 chrXIV:546964-547422 ( 23) GGGAATTGAACCCAGGGCCTC 1 chrXV:300863-301444 ( 65) GGGAATTGAACCCAGGGCCTC 1 chrX:115698-115798 ( 49) GGGAGTCGAACCCCGGTCTCC 1 chrII:644983-645396 ( 69) GGGAGTCGAACCCCGGTCTCC 1 chrXVI:209931-210482 ( 46) GGGAGTCGAACCCCGGTCTCC 1 chrVII:779433-779907 ( 37) GAGAATCGAACCCGTGTCCCC 1 chrVII:115269-115790 ( 74) GGGGCTCGAACCCCTGACATT 1 chrXVI:769004-769479 ( 26) GGGGCTCGAACCCCTGACATT 1 chrIV:1095151-1095672 ( 19) GTGGATCGAACACAGGACCTC 1 chrXVI:560003-560477 ( 18) GTGGATCGAACACAGGACCTC 1 chrVIII:358285-358749 ( 21) GTGGATCGAACACAGGACCTC 1 chrXIII:352085-352601 ( 47) GTGGATCGAACACAGGACCTC 1 chrXVI:622345-622835 ( 10) GTGGATCGAACACAGGACCTC 1 chrIV:488453-489149 ( 56) GAGGTTCGAACTCGGGATCTT 1 chrII:326570-327066 ( 34) GAGGTTCGAACTCGGGATCTT 1 chrX:531604-531704 ( 6) CGGAATCGAACCGGGGGCCCA 1 chrXVI:860188-860671 ( 40) CGGAATCGAACCGGGGGCCCA 1 chrV:438501-439010 ( 38) CAGGATCGAACTGGGGACGTT 1 chrXIII:586397-586874 ( 61) CAGGATCGAACTGGGGACGTT 1 chrV:469266-469690 ( 72) CAGGATCGAACTGGGGACGTT 1 chrXII:687654-688160 ( 12) CAGGATCGAACTGGGGACGTT 1 chrXI:307908-308418 ( 41) CAGGATCGAACTGGGGACGTT 1 chrII:266197-266648 ( 48) CGGATTTGAACCGATGATCTC 1 chrIX:325544-326077 ( 30) CGGATTTGAACCGATGATCTC 1 chrV:250107-250533 ( 57) CGGATTCGAACCGGGGTTGTC 1 chrXIII:837732-838231 ( 55) GCGAGTCGAACGCCCGATCTC 1 chrXIII:168611-169063 ( 66) GCGAGTCGAACGCCCGATCTC 1 chrVI:210460-210878 ( 10) GCGAGTCGAACGCCCGATCTC 1 chrXV:976188-976810 ( 14) GAGGTTCGAACTCTCGACCTT 1 chrIV:1175597-1176099 ( 73) GAGGTTCGAACTCTCGACCTT 1 chrX:390836-390936 ( 19) GAGGTTCGAACTCTCGACCTT 1 chrXIV:632428-632897 ( 30) GAGGGTTGAACTCACGATCTT 1 chrXII:975787-976269 ( 15) GAGGGTTGAACTCACGATCTT 1 chrVII:730960-731446 ( 27) GAGGGTTGAACTCACGATCTT 1 chrVIII:466788-467263 ( 56) CAGAATTGAACTAGCGACCTT 1 chrIX:324107-324577 ( 21) GGGAATTGAACCCCGATCTGG 1 chrX:541353-541453 ( 25) GGGAATTGAACCCCGATCTGG 1 chrXII:426917-427430 ( 50) GGGAATTGAACCCCGATCTGG 1 chrX:374186-374286 ( 9) GGGAATTGAACCCCGATCTGG 1 chrIX:336115-336630 ( 37) GGGAATTGAACCCCGATCTGG 1 chrXI:302722-303227 ( 69) AGGAATTGAACCTGCAACCCT 1 chrXIII:379026-379620 ( 40) AGGAATTGAACCTGCAACCCT 1 chrIV:619693-620227 ( 69) AGGACTTGAACCTGGAATCTT 1 chrXI:490782-491221 ( 59) AGGACTTGAACCTGGAATCTT 1 chrXII:374203-374674 ( 9) AGGACTTGAACCTGGAATCTT 1 chrXVI:435651-436162 ( 47) CAGGATCGAACTAAGGACCAA 1 chrII:347414-347915 ( 49) CGAGTTCGAACCTCGCATCCT 1 chrXV:710012-710562 ( 5) CGGTTTCGATCCGAGGACATC 1 chrV:434386-434755 ( 31) TAGAATCGAACCAGGGTTTCA 1 chrVII:110432-110924 ( 7) TAGAATCGAACCAGGGTTTCA 1 chrII:135939-136332 ( 68) GCGGGCCGAAAGTCGGACTTT 1 chrXII:728176-728609 ( 68) GGGACCTGACCCAGTCATCCT 1 chrXIII:701685-703310 ( 15) GGAAACAGCACCAATGACTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRATCGAACCSVGGACCTY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 6.8066 E= 2.4e-216 -224 75 160 -356 -24 -189 169 -224 -356 -1291 234 -1291 76 -1291 128 -456 79 -19 -19 -124 -1291 -231 -1291 165 -456 192 -1291 -24 -1291 -1291 237 -1291 168 -389 -1291 -1291 166 -389 -1291 -456 -456 236 -1291 -1291 -224 178 -189 -48 -198 150 57 -176 -39 97 86 -298 -256 -31 147 -24 -56 -289 199 -1291 127 -1291 -157 -66 -1291 186 -1291 -4 -298 184 -131 -66 -456 43 -157 111 -224 124 -157 44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRATCGAACCSVGGACCTY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 77 E= 2.4e-216 0.064935 0.324675 0.584416 0.025974 0.259740 0.051948 0.623377 0.064935 0.025974 0.000000 0.974026 0.000000 0.519481 0.000000 0.467532 0.012987 0.532468 0.168831 0.168831 0.129870 0.000000 0.038961 0.000000 0.961039 0.012987 0.727273 0.000000 0.259740 0.000000 0.000000 1.000000 0.000000 0.987013 0.012987 0.000000 0.000000 0.974026 0.012987 0.000000 0.012987 0.012987 0.987013 0.000000 0.000000 0.064935 0.662338 0.051948 0.220779 0.077922 0.545455 0.285714 0.090909 0.233766 0.376623 0.350649 0.038961 0.051948 0.155844 0.532468 0.259740 0.207792 0.025974 0.766234 0.000000 0.740260 0.000000 0.064935 0.194805 0.000000 0.701299 0.000000 0.298701 0.038961 0.688312 0.077922 0.194805 0.012987 0.259740 0.064935 0.662338 0.064935 0.454545 0.064935 0.415584 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRATCGAACCSVGGACCTY MEME-2 regular expression -------------------------------------------------------------------------------- [GC][GA]G[AG]AT[CT]GAAC[CT][CG][CGA][GT][GA]A[CT]C[TC][CT] -------------------------------------------------------------------------------- Time 668.49 secs. ******************************************************************************** ******************************************************************************** MOTIF GATTWGAAATCTKTTGSGCTTYSMCYGCGC MEME-3 width = 30 sites = 16 llr = 490 E-value = 2.3e-088 ******************************************************************************** -------------------------------------------------------------------------------- Motif GATTWGAAATCTKTTGSGCTTYSMCYGCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :8::6:698::1:1::::::2::4::1::: pos.-specific C ::11::3::1a1122:4:9:244696:a:a probability G a1::191:2:::41:a6a::1:6:::9:a: matrix T :19931:1:9:8668:::1a66::14:::: bits 2.4 * * * * *** 2.1 * * * * *** 1.9 * * * ** * **** 1.7 * * * * *** * **** Relative 1.4 * * * * * ***** * * **** Entropy 1.2 * ** * **** ****** ******** (44.2 bits) 0.9 **** * ***** ****** ********* 0.7 **** ******** ****** ********* 0.5 ******************** ********* 0.2 ****************************** 0.0 ------------------------------ Multilevel GATTAGAAATCTTTTGGGCTTTGCCCGCGC consensus T C G C CCA T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATTWGAAATCTKTTGSGCTTYSMCYGCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrX:523732-523832 - 66 7.88e-19 CGAAA GATTAGAAATCTTTTGGGCTTTGCCCGCGC AGGTTCGAGT chrVIII:132832-133350 - 8 7.88e-19 TAAGGCGAAA GATTAGAAATCTTTTGGGCTTTGCCCGCGC AGGTTCG chrI:182380-182769 - 21 7.88e-19 TAAGGCGAAA GATTAGAAATCTTTTGGGCTTTGCCCGCGC AGGTTCGAGT chrII:226862-227401 + 23 7.88e-19 TAAGGCGAAA GATTAGAAATCTTTTGGGCTTTGCCCGCGC AGGTTCGAGT chrIV:437572-438008 + 61 7.88e-19 TAAGGCGAAA GATTAGAAATCTTTTGGGCTTTGCCCGCGC AGGTTCGAGT chrXII:167759-168234 - 21 7.88e-19 TAAGGCGAAA GATTAGAAATCTTTTGGGCTTTGCCCGCGC AGGTTCGAGT chrIV:980788-981250 - 28 7.88e-19 TAAGGCGAAA GATTAGAAATCTTTTGGGCTTTGCCCGCGC AGGTTCGAGT chrXVI:689381-689864 + 22 2.86e-16 TAAGGCGACA GACTTGAAATCTGTTGGGCTCTGCCCGCGC TGGTTCAAAT chrV:288202-288738 - 46 2.86e-16 TAAGGCGACA GACTTGAAATCTGTTGGGCTCTGCCCGCGC TGGTTCAAAT chrXVI:435651-436162 + 70 1.51e-14 AGGACCAACA GATTTGCAATCTGCTGCGCTACCACTGCGC C chrXVI:775654-776032 + 5 1.51e-14 AACA GATTTGCAATCTGCTGCGCTACCACTGCGC CATACGAGCT chrII:642848-643280 + 26 1.51e-14 AGGACCAACA GATTTGCAATCTGCTGCGCTACCACTGCGC CATACGAGCT chrIII:227779-228208 + 47 9.49e-13 GGAATAAAAA GTTCGGCTATCTCTTGGGCTCTGCCCGCGC TGGTTCAAAT chrXVI:338612-339224 + 13 2.81e-12 AGGACATCAG GGTTATGAGCCCTGCGCGCTTCCACTGCGC CACGGCGCTG chrX:517657-517757 + 30 2.81e-12 AGGACATCAG GGTTATGAGCCCTGCGCGCTTCCACTGCGC CACGGCGCTT chrXIII:747767-748152 + 16 7.14e-11 ATAATCTTCT GATTAGAAGTCAGACGCGTTGCCATTACGC CACGCGAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATTWGAAATCTKTTGSGCTTYSMCYGCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:523732-523832 7.9e-19 65_[-3]_5 chrVIII:132832-133350 7.9e-19 7_[-3]_63 chrI:182380-182769 7.9e-19 20_[-3]_50 chrII:226862-227401 7.9e-19 22_[+3]_48 chrIV:437572-438008 7.9e-19 60_[+3]_10 chrXII:167759-168234 7.9e-19 20_[-3]_50 chrIV:980788-981250 7.9e-19 27_[-3]_43 chrXVI:689381-689864 2.9e-16 21_[+3]_49 chrV:288202-288738 2.9e-16 45_[-3]_25 chrXVI:435651-436162 1.5e-14 69_[+3]_1 chrXVI:775654-776032 1.5e-14 4_[+3]_66 chrII:642848-643280 1.5e-14 25_[+3]_45 chrIII:227779-228208 9.5e-13 46_[+3]_24 chrXVI:338612-339224 2.8e-12 12_[+3]_58 chrX:517657-517757 2.8e-12 29_[+3]_41 chrXIII:747767-748152 7.1e-11 15_[+3]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATTWGAAATCTKTTGSGCTTYSMCYGCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GATTWGAAATCTKTTGSGCTTYSMCYGCGC width=30 seqs=16 chrX:523732-523832 ( 66) GATTAGAAATCTTTTGGGCTTTGCCCGCGC 1 chrVIII:132832-133350 ( 8) GATTAGAAATCTTTTGGGCTTTGCCCGCGC 1 chrI:182380-182769 ( 21) GATTAGAAATCTTTTGGGCTTTGCCCGCGC 1 chrII:226862-227401 ( 23) GATTAGAAATCTTTTGGGCTTTGCCCGCGC 1 chrIV:437572-438008 ( 61) GATTAGAAATCTTTTGGGCTTTGCCCGCGC 1 chrXII:167759-168234 ( 21) GATTAGAAATCTTTTGGGCTTTGCCCGCGC 1 chrIV:980788-981250 ( 28) GATTAGAAATCTTTTGGGCTTTGCCCGCGC 1 chrXVI:689381-689864 ( 22) GACTTGAAATCTGTTGGGCTCTGCCCGCGC 1 chrV:288202-288738 ( 46) GACTTGAAATCTGTTGGGCTCTGCCCGCGC 1 chrXVI:435651-436162 ( 70) GATTTGCAATCTGCTGCGCTACCACTGCGC 1 chrXVI:775654-776032 ( 5) GATTTGCAATCTGCTGCGCTACCACTGCGC 1 chrII:642848-643280 ( 26) GATTTGCAATCTGCTGCGCTACCACTGCGC 1 chrIII:227779-228208 ( 47) GTTCGGCTATCTCTTGGGCTCTGCCCGCGC 1 chrXVI:338612-339224 ( 13) GGTTATGAGCCCTGCGCGCTTCCACTGCGC 1 chrX:517657-517757 ( 30) GGTTATGAGCCCTGCGCGCTTCCACTGCGC 1 chrXIII:747767-748152 ( 16) GATTAGAAGTCAGACGCGTTGCCATTACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATTWGAAATCTKTTGSGCTTYSMCYGCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 11.378 E= 2.3e-088 -1064 -1064 237 -1064 140 -1064 -62 -229 -1064 -62 -1064 151 -1064 -162 -1064 161 102 -1064 -162 2 -1064 -1064 218 -130 102 37 -62 -1064 161 -1064 -1064 -229 140 -1064 -4 -1064 -1064 -62 -1064 151 -1064 237 -1064 -1064 -229 -62 -1064 140 -1064 -162 96 87 -229 -4 -62 102 -1064 -4 -1064 140 -1064 -1064 237 -1064 -1064 96 170 -1064 -1064 -1064 237 -1064 -1064 228 -1064 -229 -1064 -1064 -1064 170 -71 -4 -162 87 -1064 96 -1064 102 -1064 96 170 -1064 29 170 -1064 -1064 -1064 228 -1064 -229 -1064 170 -1064 29 -229 -1064 228 -1064 -1064 237 -1064 -1064 -1064 -1064 237 -1064 -1064 237 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATTWGAAATCTKTTGSGCTTYSMCYGCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 16 E= 2.3e-088 0.000000 0.000000 1.000000 0.000000 0.812500 0.000000 0.125000 0.062500 0.000000 0.125000 0.000000 0.875000 0.000000 0.062500 0.000000 0.937500 0.625000 0.000000 0.062500 0.312500 0.000000 0.000000 0.875000 0.125000 0.625000 0.250000 0.125000 0.000000 0.937500 0.000000 0.000000 0.062500 0.812500 0.000000 0.187500 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 1.000000 0.000000 0.000000 0.062500 0.125000 0.000000 0.812500 0.000000 0.062500 0.375000 0.562500 0.062500 0.187500 0.125000 0.625000 0.000000 0.187500 0.000000 0.812500 0.000000 0.000000 1.000000 0.000000 0.000000 0.375000 0.625000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.937500 0.000000 0.062500 0.000000 0.000000 0.000000 1.000000 0.187500 0.187500 0.062500 0.562500 0.000000 0.375000 0.000000 0.625000 0.000000 0.375000 0.625000 0.000000 0.375000 0.625000 0.000000 0.000000 0.000000 0.937500 0.000000 0.062500 0.000000 0.625000 0.000000 0.375000 0.062500 0.000000 0.937500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATTWGAAATCTKTTGSGCTTYSMCYGCGC MEME-3 regular expression -------------------------------------------------------------------------------- GATT[AT]G[AC]AATCT[TG]TTG[GC]GCTT[TC][GC][CA]C[CT]GCGC -------------------------------------------------------------------------------- Time 981.89 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:326570-327066 2.14e-07 33_[+2(3.14e-09)]_46 chrVIII:174989-175960 5.61e-01 100 chrXIV:739289-739842 8.58e-01 100 chrVII:110432-110924 3.66e-04 6_[+2(3.28e-06)]_73 chrXI:208450-209157 7.84e-01 100 chrI:141584-143690 2.36e-01 100 chrIV:1352281-1352728 6.05e-13 21_[+2(1.91e-10)]_16_[-1(6.19e-09)]_\ 22 chrXVI:819130-819901 2.11e-06 69_[+1(8.16e-11)]_11 chrXIII:433539-433798 5.28e-01 100 chrVII:472419-472679 3.53e-01 100 chrVII:345828-346688 2.83e-02 40_[+2(1.41e-05)]_39 chrXI:322395-323061 2.35e-01 100 chrIV:579059-580779 2.07e-01 100 chrIII:78309-78892 2.85e-01 100 chrXVI:432808-434382 1.89e-01 100 chrIV:1062824-1063073 6.67e-01 100 chrXI:513212-513581 2.81e-02 100 chrIX:336115-336630 1.80e-05 36_[+2(1.62e-07)]_43 chrXIV:417508-418258 2.61e-01 100 chrIV:915131-916270 2.15e-01 100 chrXII:257676-259515 7.15e-01 100 chrIX:325544-326077 1.81e-04 29_[-2(1.64e-08)]_50 chrII:181336-181634 8.72e-01 100 chrXI:379465-379918 1.73e-06 44_[+1(1.72e-08)]_36 chrXVI:209931-210482 4.29e-07 45_[+2(3.98e-10)]_34 chrVII:363845-364452 4.66e-01 100 chrXV:758975-759572 8.87e-02 100 chrXI:665590-666811 9.17e-01 100 chrVII:798446-800290 7.29e-01 100 chrXV:866563-868150 8.88e-01 100 chrXII:1028108-1028595 9.43e-01 100 chrV:110558-110951 9.95e-01 100 chrXVI:585805-586881 6.63e-01 100 chrII:408578-409007 8.64e-02 100 chrIV:599534-600317 6.34e-01 100 chrXV:663456-664086 1.00e+00 100 chrIV:769538-770114 1.11e-01 100 chrXIII:556854-557845 4.61e-01 100 chrVI:224512-225387 4.04e-03 60_[-3(6.78e-05)]_10 chrXII:648986-651257 4.39e-01 100 chrVIII:147576-148750 5.31e-01 100 chrX:517657-517757 6.47e-12 6_[+2(3.28e-06)]_2_[+3(2.81e-12)]_\ 41 chrVII:255181-255675 5.74e-01 100 chrVIII:385140-386929 9.78e-01 100 chrXII:737758-738193 3.11e-01 100 chrXIII:145888-147676 5.78e-01 100 chrXIII:880301-880882 8.18e-01 100 chrXIV:569667-570152 3.20e-14 17_[+2(1.91e-10)]_17_[-1(8.16e-11)]_\ 25 chrVII:344097-345280 4.41e-01 100 chrXVI:769004-769479 6.00e-06 25_[+2(1.51e-09)]_54 chrXII:949336-950444 3.61e-01 100 chrIV:1449796-1451275 9.57e-02 100 chrXV:605084-606450 3.09e-01 100 chrXIII:91031-92138 4.50e-02 100 chrVII:828334-828991 9.06e-01 100 chrII:36174-36596 9.30e-05 68_[+1(1.54e-08)]_12 chrX:390836-390936 2.46e-09 18_[+2(3.96e-08)]_16_[-1(7.25e-08)]_\ 25 chrVI:167237-167666 7.51e-04 41_[+1(2.93e-07)]_39 chrXVI:340520-340970 4.61e-01 100 chrVI:31964-32349 1.09e-01 100 chrXI:258438-259845 6.63e-01 100 chrXII:720620-721421 9.37e-01 100 chrXI:589884-590336 3.38e-01 100 chrXI:7805-8163 2.84e-01 100 chrV:151708-153234 6.87e-01 100 chrIV:884203-885582 4.49e-01 100 chrVII:73704-74226 4.05e-02 29_[+1(6.64e-05)]_51 chrXIII:225334-226991 1.76e-01 100 chrXIII:759404-763155 2.68e-01 100 chrXII:948810-949184 8.31e-02 100 chrXII:366044-366816 7.96e-02 78_[-2(2.86e-05)]_1 chrVII:939001-939713 9.17e-01 100 chrXI:83976-84427 4.05e-06 62_[+1(7.88e-09)]_18 chrXI:439927-440634 7.38e-01 100 chrXII:837582-839505 6.58e-01 100 chrII:644983-645396 1.51e-06 68_[-2(3.98e-10)]_11 chrV:207104-207633 7.42e-04 79_[-2(3.28e-06)] chrXII:253899-255314 3.33e-01 100 chrIV:980788-981250 2.30e-21 27_[-3(7.88e-19)]_3_[-1(3.96e-10)]_\ 20 chrXII:5476-5932 7.02e-01 100 chrVII:56383-58891 6.04e-03 43_[-1(4.58e-06)]_37 chrXVI:520017-520521 9.75e-01 100 chrV:492195-492699 8.00e-05 1_[-1(7.90e-08)]_79 chrXIV:559267-559550 2.11e-01 100 chrVII:730960-731446 1.78e-04 26_[-2(5.24e-08)]_53 chrXII:234591-234959 9.73e-01 100 chrXVI:431892-432188 3.74e-01 100 chrXII:780601-781884 7.83e-02 100 chrXV:978690-979562 7.93e-01 100 chrVII:1000150-1000706 8.14e-02 100 chrII:642848-643280 2.15e-14 2_[+2(9.14e-07)]_2_[+3(1.51e-14)]_\ 45 chrX:745246-745346 8.37e-01 100 chrXVI:39973-40624 6.71e-01 100 chrVII:726421-728141 9.41e-01 100 chrXV:92102-94811 2.07e-01 100 chrVII:592362-592971 9.20e-02 100 chrXVI:302635-304280 2.59e-01 100 chrIII:107156-107838 6.95e-01 100 chrXVI:810460-810880 1.33e-05 61_[+1(5.49e-09)]_19 chrVIII:289072-289488 5.91e-01 100 chrV:423091-425366 3.63e-01 100 chrXI:558564-559471 7.17e-01 100 chrXVI:622345-622835 3.24e-11 9_[+2(2.78e-09)]_35_[-1(1.54e-08)]_\ 15 chrXII:903170-903671 5.31e-01 100 chrXII:167759-168234 2.30e-21 20_[-3(7.88e-19)]_3_[-1(3.96e-10)]_\ 27 chrXVI:743864-744592 2.52e-01 100 chrVII:986819-987834 1.84e-02 100 chrXVI:901299-901969 6.54e-01 100 chrXII:919742-922756 2.61e-01 100 chrXIV:776653-777137 5.58e-01 100 chrXII:975787-976269 1.51e-09 14_[+2(5.24e-08)]_17_[-1(5.49e-09)]_\ 28 chrIV:1355708-1356012 9.85e-01 100 chrV:396177-397935 5.51e-01 100 chrVI:90549-90924 1.08e-01 100 chrIX:316133-318296 2.24e-01 100 chrXVI:930617-931002 7.97e-01 100 chrXV:514381-514707 3.02e-01 100 chrIV:76808-77182 4.98e-01 100 chrIV:1328891-1331185 4.68e-01 100 chrXV:391092-392557 7.61e-01 100 chrVII:555049-558075 9.85e-02 3_[-2(8.84e-05)]_76 chrXIII:379026-379620 1.23e-04 39_[+2(2.07e-07)]_40 chrVIII:62577-62918 1.22e-01 100 chrIV:385970-387906 2.75e-01 100 chrV:174720-175037 5.56e-01 100 chrVII:364887-366919 6.71e-01 100 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20_[-1(4.97e-07)]_60 chrIV:427606-428708 5.78e-01 100 chrXI:108212-110590 1.81e-01 100 chrXII:440401-441708 3.23e-01 100 chrVIII:125914-127819 9.69e-01 100 chrII:592296-593483 3.67e-01 100 chrIV:132725-133000 2.60e-01 100 chrIX:232723-232956 9.41e-01 100 chrXIII:122933-124711 6.52e-02 60_[+2(3.42e-05)]_19 chrXI:581095-581351 2.82e-02 100 chrII:197299-197867 1.63e-06 3_[-2(1.91e-10)]_76 chrXIII:306094-307142 2.37e-02 100 chrXII:282436-283941 6.54e-01 100 chrXVI:856750-857155 2.93e-13 5_[+1(4.66e-10)]_16_[-2(2.59e-10)]_\ 38 chrXII:1028853-1030514 7.52e-01 100 chrXIV:783405-784321 1.31e-02 11_[+1(1.93e-05)]_69 chrXIV:503081-503379 2.88e-01 100 chrV:311619-312299 3.06e-01 100 chrXII:1017702-1019374 7.12e-01 100 chrXVI:860188-860671 1.79e-09 5_[+1(4.97e-07)]_14_[-2(3.98e-09)]_\ 40 chrI:202467-202828 8.60e-01 100 chrV:504346-505271 9.79e-01 100 chrXV:571742-572148 2.26e-01 100 chrIV:1095151-1095672 3.24e-11 18_[+2(2.78e-09)]_35_[-1(1.54e-08)]_\ 6 chrXIII:887002-889193 2.37e-01 100 chrVII:185504-185962 6.05e-13 40_[+2(1.91e-10)]_16_[-1(6.19e-09)]_\ 3 chrX:224021-224121 4.98e-01 100 chrII:611884-614319 1.01e-01 100 chrX:541353-541453 2.08e-04 24_[-2(1.62e-07)]_55 chrIX:324107-324577 1.80e-05 20_[+2(1.62e-07)]_59 chrXV:407610-408293 4.34e-01 100 chrX:233709-233809 4.31e-05 49_[+1(7.90e-08)]_31 chrXIII:572701-573185 7.69e-05 36_[-1(7.25e-08)]_44 chrIII:68380-68655 9.62e-01 100 chrIV:156091-156305 3.16e-01 100 chrXIII:637162-637361 3.70e-01 100 chrX:139039-139139 7.21e-01 100 chrVII:276876-278743 4.75e-01 100 chrIX:129264-130358 9.94e-01 100 chrVI:4487-5450 3.11e-02 2_[-1(3.48e-05)]_22_[-1(8.86e-05)]_\ 36 chrVII:702840-704031 8.71e-02 100 chrV:443066-443498 1.20e-06 17_[-1(8.16e-11)]_63 chrIII:177075-178824 9.20e-01 100 chrXIII:549899-553214 8.87e-01 100 chrXVI:191937-192785 7.31e-02 34_[+2(9.92e-05)]_45 chrXI:617685-619243 9.93e-01 100 chrXII:47247-49168 3.74e-01 100 chrIII:82379-82761 6.11e-01 100 chrXV:677889-679191 9.60e-01 100 chrXIII:168611-169063 3.13e-08 13_[+1(2.93e-07)]_32_[-2(3.28e-08)]_\ 14 chrVIII:23-181 7.55e-02 100 chrXI:216874-218808 8.10e-01 100 chrXVI:678685-679385 8.15e-02 100 chrIV:1239340-1240235 2.74e-01 100 chrV:102041-102632 7.40e-01 100 chrXIV:560530-560990 1.47e-05 29_[-1(2.19e-09)]_51 chrV:242822-242997 3.63e-01 100 chrVI:226440-226945 5.41e-07 55_[+2(1.91e-10)]_24 chrXIII:747767-748152 1.01e-08 15_[+3(7.14e-11)]_55 chrIV:1243117-1243318 6.62e-01 100 chrIX:68197-69939 8.98e-01 100 chrX:617716-617816 6.64e-06 36_[+1(1.23e-09)]_44 chrVII:483292-483772 7.44e-02 100 chrXVI:404232-407934 2.45e-02 100 chrVII:779433-779907 1.06e-07 1_[+1(6.64e-05)]_15_[-2(4.56e-10)]_\ 43 chrIV:322196-323653 5.11e-01 100 chrXII:809052-809584 1.65e-01 100 chrIII:162123-163951 4.10e-01 100 chrVII:475909-478634 7.61e-01 100 chrIX:254225-254573 4.48e-01 100 chrIV:1301563-1302592 6.79e-01 100 chrXIV:631709-632130 1.96e-01 100 chrX:662934-663034 2.04e-01 100 chrXVI:376950-377374 9.87e-01 100 chrXVI:575199-575628 9.27e-01 100 chrXVI:435651-436162 3.02e-14 46_[+2(9.14e-07)]_2_[+3(1.51e-14)]_\ 1 chrXII:897689-899734 4.32e-01 100 chrIX:138016-139402 8.81e-01 100 chrX:396550-396650 1.16e-03 20_[-1(4.97e-07)]_60 chrVII:413368-413619 3.60e-01 100 chrVII:206182-206874 1.73e-01 100 chrXII:759099-759356 3.41e-01 100 chrXV:968033-968413 1.04e-03 22_[-3(3.60e-05)]_48 chrII:167194-169729 8.98e-01 100 chrXIV:546964-547422 1.98e-06 22_[-2(3.98e-10)]_57 chrXIV:234241-235690 3.68e-01 100 chrX:414781-414881 6.05e-13 15_[+1(6.19e-09)]_16_[-2(1.91e-10)]_\ 28 chrXII:962800-963326 3.39e-06 16_[-1(7.88e-09)]_64 chrII:236510-237319 8.96e-01 100 chrXIII:661639-662051 5.52e-02 100 chrVI:101071-101596 3.33e-01 100 chrVIII:466788-467263 3.52e-07 23_[-3(4.73e-05)]_2_[-2(7.51e-08)]_\ 24 chrXV:832199-832926 9.93e-01 100 chrXV:841383-842972 9.26e-01 100 chrIV:1016959-1017504 2.27e-06 35_[+2(3.98e-10)]_44 chrXVI:699912-700708 4.57e-01 100 chrXII:261284-264168 5.31e-01 100 chrXV:670882-671579 8.39e-01 100 chrXIII:837732-838231 2.16e-08 2_[+1(2.93e-07)]_32_[-2(3.28e-08)]_\ 25 chrXV:619198-624659 1.11e-02 100 chrVIII:401042-401309 5.75e-02 28_[+2(7.26e-05)]_51 chrVII:400756-401766 3.71e-01 100 chrIX:131824-132101 1.77e-01 100 chrVIII:388673-389205 2.70e-08 13_[+2(3.98e-10)]_46_[-1(1.80e-05)] chrV:406674-409502 9.62e-02 100 chrXV:903726-904693 8.17e-01 100 chrII:347414-347915 3.78e-03 48_[+2(1.89e-06)]_31 chrII:87874-88614 6.71e-01 100 chrX:58716-58816 8.86e-01 100 chrXIII:625846-626939 4.12e-01 100 chrVIII:554112-554514 9.19e-01 100 chrVII:533617-535218 9.35e-01 100 chrVIII:381439-383326 2.12e-01 100 chrV:430963-431563 1.68e-01 100 chrVIII:451121-453059 8.56e-02 100 chrXIII:752968-754996 9.78e-01 100 chrXVI:377924-378999 7.69e-01 100 chrV:176881-177434 1.77e-06 32_[-2(3.98e-10)]_47 chrVIII:16884-18154 5.98e-01 100 chrVI:162015-162405 2.17e-03 73_[+1(4.97e-07)]_7 chrIV:619693-620227 1.55e-04 68_[+2(2.63e-07)]_11 chrIX:183299-183715 1.88e-06 30_[-1(8.16e-11)]_50 chrXIV:442817-444809 6.69e-01 100 chrIX:382063-382667 1.04e-01 100 chrXV:710012-710562 1.59e-02 4_[-2(3.28e-06)]_75 chrX:704705-704805 4.45e-01 100 chrXII:489299-489602 4.01e-02 100 chrXIV:413537-416610 9.83e-01 100 chrIV:1081266-1081433 8.52e-01 100 chrIII:227779-228208 1.45e-14 4_[+1(2.50e-09)]_22_[+3(9.49e-13)]_\ 24 chrXVI:502451-503211 6.99e-01 100 chrXI:517136-517512 8.83e-01 100 chrVIII:132832-133350 5.93e-21 7_[-3(7.88e-19)]_3_[-1(3.96e-10)]_\ 40 chrX:90020-90120 3.34e-01 100 chrXVI:880020-880586 3.39e-07 52_[+2(1.91e-10)]_27 chrVI:269532-270160 7.39e-01 100 chrXIV:715646-717106 9.88e-01 100 chrXVI:642262-643376 5.49e-01 100 chrXV:854006-854427 1.06e-12 30_[+2(8.76e-11)]_16_[-1(1.64e-09)]_\ 13 chrVII:774158-774644 2.93e-13 3_[+1(4.66e-10)]_16_[-2(2.59e-10)]_\ 40 chrIX:370231-370626 1.51e-06 79_[-2(3.98e-10)] chrII:680300-682277 9.96e-01 100 chrVII:397942-400179 5.72e-02 100 chrXIII:296734-298900 6.67e-01 100 chrXIV:575056-577517 6.31e-01 100 chrXIV:493300-495742 4.11e-01 100 chrX:531604-531704 5.77e-05 5_[-2(3.98e-09)]_74 chrXIII:768173-768624 2.93e-13 30_[+2(2.59e-10)]_16_[-1(4.66e-10)]_\ 13 chrV:51801-53281 9.58e-01 100 chrI:138888-139346 1.67e-01 100 chrIV:358054-358452 6.96e-01 100 chrX:464442-464542 7.82e-01 100 chrIV:1012255-1013969 3.53e-01 100 chrIV:449258-450067 3.55e-01 100 chrXIII:797956-798193 7.27e-01 100 chrIX:231227-232433 2.40e-01 100 chrXIII:407942-408894 2.38e-01 100 chrVII:287161-287689 2.51e-02 100 chrXV:252810-255037 2.33e-01 100 chrXI:382165-382487 9.21e-03 80_[-1(3.86e-05)] chrII:478944-479453 6.39e-01 100 chrXIII:195924-196412 5.22e-02 26_[-1(1.80e-05)]_54 chrV:491014-491915 8.99e-01 100 chrXV:1003923-1004989 9.85e-01 100 chrVII:436892-443071 2.36e-01 100 chrIV:555370-556657 2.72e-02 100 chrXI:163249-164575 5.81e-01 100 chrIX:438796-439887 1.71e-01 100 chrV:61027-62152 1.92e-01 100 chrXII:264567-265301 2.98e-01 100 chrXIII:290600-291145 1.19e-06 19_[-2(3.98e-10)]_60 chrX:523732-523832 1.27e-14 65_[-3(7.88e-19)]_5 chrIX:394567-395175 2.92e-01 100 chrIII:1-1503 4.36e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************