******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MCM1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:326605-327043 1.0000 100 chrVIII:385141-386543 1.0000 100 chrXV:31118-31667 1.0000 100 chrVII:276923-277347 1.0000 100 chrXI:326072-327601 1.0000 100 chrI:142108-143705 1.0000 100 chrIV:1461508-1462017 1.0000 100 chrXVI:821660-822273 1.0000 100 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chrVIII:411002-411666 1.0000 100 chrXII:366025-366563 1.0000 100 chrX:517672-517772 1.0000 100 chrXVI:743958-744608 1.0000 100 chrX:89839-89939 1.0000 100 chrVIII:103711-104861 1.0000 100 chrXI:45949-46992 1.0000 100 chrXV:638484-638756 1.0000 100 chrVII:515843-516638 1.0000 100 chrVI:95505-95925 1.0000 100 chrII:226873-227363 1.0000 100 chrX:606148-606248 1.0000 100 chrVII:828395-828974 1.0000 100 chrXV:866610-868120 1.0000 100 chrXII:708043-710113 1.0000 100 chrVIII:237760-238111 1.0000 100 chrXIII:362856-363268 1.0000 100 chrII:604150-607138 1.0000 100 chrXIV:68221-68841 1.0000 100 chrIX:324183-324637 1.0000 100 chrVII:398736-400144 1.0000 100 chrV:117645-118261 1.0000 100 chrXI:307963-308422 1.0000 100 chrVII:736197-736528 1.0000 100 chrV:221444-221790 1.0000 100 chrVI:225556-225973 1.0000 100 chrX:138956-139056 1.0000 100 chrIV:1256755-1257251 1.0000 100 chrXV:854019-854421 1.0000 100 chrXIV:662912-664108 1.0000 100 chrV:53541-53858 1.0000 100 chrXV:976190-976704 1.0000 100 chrXII:242198-243526 1.0000 100 chrXII:281934-282466 1.0000 100 chrII:415537-415772 1.0000 100 chrVIII:386696-386897 1.0000 100 chrII:477113-477784 1.0000 100 chrIX:99650-99953 1.0000 100 chrIV:44026-44557 1.0000 100 chrXV:841468-842216 1.0000 100 chrVIII:562326-562577 1.0000 100 chrXIII:320995-321318 1.0000 100 chrIV:769521-770061 1.0000 100 chrXIII:378945-379574 1.0000 100 chrIV:229530-230755 1.0000 100 chrXVI:692819-695028 1.0000 100 chrIV:340119-341639 1.0000 100 chrVI:137269-137895 1.0000 100 chrVIII:302266-302829 1.0000 100 chrVI:220505-221463 1.0000 100 chrVII:700145-701262 1.0000 100 chrXIII:851999-852304 1.0000 100 chrXV:80358-82992 1.0000 100 chrIII:315738-316615 1.0000 100 chrXV:797728-798791 1.0000 100 chrVII:951316-951685 1.0000 100 chrXII:212050-212445 1.0000 100 chrV:225460-225694 1.0000 100 chrII:311334-312377 1.0000 100 chrXIII:872544-873114 1.0000 100 chrXIII:905991-906326 1.0000 100 chrVIII:556191-557213 1.0000 100 chrX:75899-75999 1.0000 100 chrXIII:158763-160200 1.0000 100 chrIV:1300818-1301304 1.0000 100 chrII:347427-347809 1.0000 100 chrXV:377850-379255 1.0000 100 chrIV:884227-884572 1.0000 100 chrXI:282811-284888 1.0000 100 chrIV:1268766-1269444 1.0000 100 chrXII:282622-283987 1.0000 100 chrIV:568719-569187 1.0000 100 chrV:153053-153320 1.0000 100 chrI:71054-71523 1.0000 100 chrVII:1050194-1050674 1.0000 100 chrXIV:576693-577496 1.0000 100 chrIX:438835-439882 1.0000 100 chrV:487104-487614 1.0000 100 chrIV:1488894-1490819 1.0000 100 chrXII:951031-953918 1.0000 100 chrX:355156-355256 1.0000 100 chrVII:850095-850801 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MCM1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MCM1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MCM1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.295 C 0.205 G 0.205 T 0.295 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MCM1/background): A 0.303 C 0.197 G 0.197 T 0.303 ******************************************************************************** ******************************************************************************** MOTIF YAABCDKRAGRTCMBSGGTTCGABYCCSVK MEME-1 width = 30 sites = 78 llr = 1590 E-value = 1.0e-337 ******************************************************************************** -------------------------------------------------------------------------------- Motif YAABCDKRAGRTCMBSGGTTCGABYCCSVK MEME-1 Description -------------------------------------------------------------------------------- Simplified A 177::4257142:3:12::::3a1::::3: pos.-specific C 3213711111:175431:::a::35a7631 probability G 11133354276::2367a:::7:2::1445 matrix T 6115:231:1:7313:::aa:::45:21:3 bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 **** * * Relative 1.4 * ****** * Entropy 1.2 * * * ******* *** (29.4 bits) 0.9 * ** * ******** **** 0.7 * * ***** ******** ***** 0.5 ***** ***************** ****** 0.2 ***** ***************** ****** 0.0 ------------------------------ Multilevel TAATCAGAAGGTCCCGGGTTCGATTCCCGG consensus C CGGTGG A TAGCA A CC TGCT sequence G T T G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAABCDKRAGRTCMBSGGTTCGABYCCSVK MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXIII:480390-480830 - 69 1.98e-13 CT TAATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTTC chrXI:202840-203315 + 7 1.98e-13 GACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrVII:122074-122524 + 55 1.98e-13 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTAT chrV:435609-435997 - 7 1.98e-13 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGG chrIV:1201550-1202104 + 8 1.98e-13 TGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTAA chrVII:185535-185951 - 29 1.98e-13 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTAT chrX:414801-414901 + 30 1.98e-13 GTATGACTCT TAATCATAAGGTTAGGGGTTCGAGCCCCCT ACAGGGCTAA chrX:355156-355256 + 23 1.08e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGCT chrIV:568719-569187 + 13 1.08e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGCT chrVII:736197-736528 + 62 1.08e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGT chrXI:162346-162709 - 18 1.08e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGTT chrXIII:131652-132073 - 21 1.08e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGCT chrVII:405318-405745 + 23 1.08e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGCT chrX:374203-374303 - 47 1.08e-12 GTCTGACTTC TAATCAGAAGATTATGGGTTCGACCCCCAT CGTGAGTGCT chrII:197291-197855 + 7 3.63e-12 TGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGCT AGAGACCATT chrV:551056-551554 - 38 3.63e-12 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGCT AGAGACCAAT chrXIV:569682-570152 - 8 3.63e-12 ACCGTGCTAA TAACGCGGGGATCAGCGGTTCGATCCCGCT AGAGACC chrXIV:631704-632099 - 3 4.84e-12 TCTCGCTTAG GGTGCGGGAGGTCCCGGGTTCGAGTCCCGG CT chrIII:123331-123832 - 54 4.84e-12 TCTCGCTTAG GGTGCGGGAGGTCCCGGGTTCGAGTCCCGG CTCGCCCCAC chrV:487104-487614 - 30 7.36e-12 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTA chrXIII:290498-291154 + 59 7.36e-12 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCCG TAGCGGAGTT chrVII:401393-401749 - 14 7.36e-12 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTA chrX:115623-115723 - 65 7.36e-12 ACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTA chrXVI:209985-210452 - 32 7.36e-12 CATCACGCTT TCACCGTGGAGACCGGGGTTCGACTCCCCG TATCGGAGTT chrXV:854019-854421 - 25 8.44e-12 GCTTCCCTTG CAAGGAAGAGGTCATCGGTTCGATTCCGGT TGCGTCCAAT chrXII:214711-215149 - 11 8.44e-12 GCTTCCCTTG CAAGGAAGAGGTCATCGGTTCGATTCCGGT TGCGTCCATT chrX:538381-538481 + 4 2.41e-11 TCC TAAGGAGAAGACTGCGGGTTCGAGTCCCGT ACGGAACGTT chrXI:307963-308422 - 10 3.09e-11 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTGGG CGAAATCAA chrVIII:85197-85503 - 6 3.09e-11 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTGGG CGAAA chrXIII:372214-372688 - 52 3.09e-11 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTGGG CGAAATCATT chrV:438516-438945 + 56 3.09e-11 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTGGG CGAAATCAAT chrXII:687661-688129 - 22 3.09e-11 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTGGG CGAAATCATT chrV:469165-469869 + 26 3.09e-11 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTGGG CGAAATCATT chrXIII:420326-420841 - 63 3.09e-11 CTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTGGG CGAAATCATT chrVII:823291-823704 + 71 3.09e-11 ATCTGCTTAA CACGCAGAACGTCCCCAGTTCGATCCTGGG chrXVI:860209-860670 + 23 3.94e-11 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCCGGG CTTGCGCAGA chrVI:162042-162521 + 30 3.94e-11 TCCAACGTTG CCATCGTTGGGCCCCCGGTTCGATTCCGGG CTTGCGCAGT chrX:531613-531713 + 2 3.94e-11 G CCATCGTTGGGCCCCCGGTTCGATTCCGGG CTTGCGCAGT chrIV:488430-489201 - 40 7.98e-11 GTCGCCTTTA CACGGCGAAGATCCCGAGTTCGAACCTCGG TTGGATCAGA chrII:326605-327043 - 26 7.98e-11 GTCGCCTTTA CACGGCGAAGATCCCGAGTTCGAACCTCGG TTGGATCAAA chrVI:101160-101762 + 30 1.00e-10 GAAGACAAAG CATGCGAGAGGCCCTGGGTTCAATTCCCAG CTCGCCCCCT chrXV:980519-981013 + 34 1.00e-10 AGGAACAAAG CATGCGAGAGGCCCTGGGTTCAATTCCCAG CTCGCCCCTT chrIV:645009-645365 - 24 1.40e-10 CTTTCGGTTT TGATCCGGACAACCCCGGTTCGAATCCGGG TAGGACCTTT chrII:350630-351092 + 50 1.40e-10 CTTTCGGTTT TGATCCGGACAACCCCGGTTCGAATCCGGG TAAGACCTTA chrIX:325562-326073 + 16 1.93e-10 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGAT TGGAAGCAAT chrIV:434072-434508 - 32 1.93e-10 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGAT TGGAAGCATA chrIII:295294-295818 + 13 1.93e-10 GCCACACTAG TAATGTGGAGATCATCGGTTCAAATCCGAT TGGAAGCATT chrVII:115295-115764 + 67 7.14e-10 TTAAGCAAGG ATACCGAAATGTCAGGGGTTCGAGCCCCCT ATGA chrXII:875205-875634 + 65 7.14e-10 TTAAGCAAGG ATACCGAAATGTCAGGGGTTCGAGCCCCCT ATGAGG chrVII:730971-731381 + 47 9.47e-10 GTGCGACTGT TAATCGCAAGATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrXIV:632427-632873 + 35 9.47e-10 GTGCGACTGT TAATCGCAAGATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrXII:975811-976240 - 16 9.47e-10 GTGCGACTGT TAATCGCAAGATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrXI:74430-74947 + 22 9.47e-10 GTGCGACTGT TAATCGCAAGATCGTGAGTTCAACCCTCAC TGGGGTCGCT chrXV:976190-976704 + 59 1.04e-09 GTCAGTCTCA TAATCTGAAGGTCGAGAGTTCGAACCTCCC CTGGAGCAAT chrXV:340136-340565 - 7 1.04e-09 GTCTGGCTAC GAACCAGAAGATTCCAGGTTCAAGTCCTGG CGGGGA chrIV:619744-620201 - 55 1.04e-09 GTCTGGCTAC GAACCAGAAGATTCCAGGTTCAAGTCCTGG CGGGGAAGAT chrXI:490784-491237 + 43 1.04e-09 GTCTGGCTAC GAACCAGAAGATTCCAGGTTCAAGTCCTGG CGGGGAAGAA chrXIII:320995-321318 - 49 1.49e-09 GCTCCCTTAG CATGGGAGAGGTCTCCGGTTCGATTCCGGA CTCGTCCATT chrXIII:768184-768637 - 17 1.49e-09 GCTCCCTTAG CATGGGAGAGGTCTCCGGTTCGATTCCGGA CTCGTCCAAA chrXII:656742-657176 - 33 1.49e-09 GCTCCCTTAG CATGGGAGAGGTCTCCGGTTCGATTCCGGA CTCGTCCAAG chrX:542624-542724 - 55 2.31e-09 TATCACTACG AAATCTTGAGATCGGGCGTTCGACTCGCCC CCGGGAGATT chrXV:288038-288516 + 16 2.31e-09 TATCACTACG AAATCTTGAGATCGGGCGTTCGACTCGCCC CCGGGAGATA chrXIII:837750-838224 + 42 2.31e-09 TACCACTACG AAATCTTGAGATCGGGCGTTCGACTCGCCC CCGGGAGATA chrIV:946156-946628 + 21 2.31e-09 TATCACTACG AAATCTTGAGATCGGGCGTTCGACTCGCCC CCGGGAGATT chrXVI:55834-56512 - 54 2.98e-09 AATAAGATTG CAATCGAAGGGTTGCAGGTTCAATTCCTGT CCGTTTCAAT chrX:415715-415815 - 8 2.98e-09 AATAAGATTG CAATCGAAGGGTTGCAGGTTCAATTCCTGT CCGTTTC chrVI:157726-158192 - 15 6.15e-09 TTCGGTCAAG TTATCTGGAGGTCCTGTGTTCGATCCACAG AATTCGCATT chrIV:1256755-1257251 - 63 1.04e-08 CATGCTTC CCAAGCATGGGGCCCGGGTTCGATTCCCGG CTTCCGCATT chrX:517672-517772 - 1 1.50e-08 GCAGGGCTCA TAACCCTGATGTCCTCGGATCGAAACCGAG chrXV:710034-710517 + 10 1.50e-08 CAGGGCTCA TAACCCTGATGTCCTCGGATCGAAACCGAG CGGCGCTAAT chrX:541350-541450 + 54 1.73e-08 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrXII:426940-427432 + 30 1.73e-08 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCCG TCGCGGAGAA chrXIII:463333-463864 + 40 1.73e-08 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrX:204530-204630 + 66 1.73e-08 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCCG TCGCG chrII:405682-406324 + 41 1.73e-08 TGGGCGCTTG TCGCGTGCCAGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrXVI:435629-436172 - 51 1.13e-07 AGCAGATTGC AAATCTGTTGGTCCTTAGTTCGATCCTGAG TGCGAGCTTT chrVII:483207-483809 + 19 1.33e-07 TCTGCGGTAA TTATCGCCGGATCTCCGCTTCGAGACCGGG TTTGTTTTCA chrVII:700145-701262 + 66 3.38e-07 GAGGTCCTGA TCTCTTCGGAGGCGCGGGTTCAAACCCCGC GGGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAABCDKRAGRTCMBSGGTTCGABYCCSVK MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:480390-480830 2e-13 68_[-1]_2 chrXI:202840-203315 2e-13 6_[+1]_64 chrVII:122074-122524 2e-13 54_[+1]_16 chrV:435609-435997 2e-13 6_[-1]_64 chrIV:1201550-1202104 2e-13 7_[+1]_63 chrVII:185535-185951 2e-13 28_[-1]_42 chrX:414801-414901 2e-13 29_[+1]_41 chrX:355156-355256 1.1e-12 22_[+1]_48 chrIV:568719-569187 1.1e-12 12_[+1]_58 chrVII:736197-736528 1.1e-12 61_[+1]_9 chrXI:162346-162709 1.1e-12 17_[-1]_53 chrXIII:131652-132073 1.1e-12 20_[-1]_50 chrVII:405318-405745 1.1e-12 22_[+1]_48 chrX:374203-374303 1.1e-12 46_[-1]_24 chrII:197291-197855 3.6e-12 6_[+1]_64 chrV:551056-551554 3.6e-12 37_[-1]_33 chrXIV:569682-570152 3.6e-12 7_[-1]_63 chrXIV:631704-632099 4.8e-12 2_[-1]_68 chrIII:123331-123832 4.8e-12 53_[-1]_17 chrV:487104-487614 7.4e-12 29_[-1]_41 chrXIII:290498-291154 7.4e-12 58_[+1]_12 chrVII:401393-401749 7.4e-12 13_[-1]_57 chrX:115623-115723 7.4e-12 64_[-1]_6 chrXVI:209985-210452 7.4e-12 31_[-1]_39 chrXV:854019-854421 8.4e-12 24_[-1]_46 chrXII:214711-215149 8.4e-12 10_[-1]_60 chrX:538381-538481 2.4e-11 3_[+1]_67 chrXI:307963-308422 3.1e-11 9_[-1]_61 chrVIII:85197-85503 3.1e-11 5_[-1]_65 chrXIII:372214-372688 3.1e-11 51_[-1]_19 chrV:438516-438945 3.1e-11 55_[+1]_15 chrXII:687661-688129 3.1e-11 21_[-1]_49 chrV:469165-469869 3.1e-11 25_[+1]_45 chrXIII:420326-420841 3.1e-11 62_[-1]_8 chrVII:823291-823704 3.1e-11 70_[+1] chrXVI:860209-860670 3.9e-11 22_[+1]_48 chrVI:162042-162521 3.9e-11 29_[+1]_41 chrX:531613-531713 3.9e-11 1_[+1]_69 chrIV:488430-489201 8e-11 39_[-1]_31 chrII:326605-327043 8e-11 25_[-1]_45 chrVI:101160-101762 1e-10 29_[+1]_41 chrXV:980519-981013 1e-10 33_[+1]_37 chrIV:645009-645365 1.4e-10 23_[-1]_47 chrII:350630-351092 1.4e-10 49_[+1]_21 chrIX:325562-326073 1.9e-10 15_[+1]_55 chrIV:434072-434508 1.9e-10 31_[-1]_39 chrIII:295294-295818 1.9e-10 12_[+1]_58 chrVII:115295-115764 7.1e-10 66_[+1]_4 chrXII:875205-875634 7.1e-10 64_[+1]_6 chrVII:730971-731381 9.5e-10 46_[+1]_24 chrXIV:632427-632873 9.5e-10 34_[+1]_36 chrXII:975811-976240 9.5e-10 15_[-1]_55 chrXI:74430-74947 9.5e-10 21_[+1]_49 chrXV:976190-976704 1e-09 58_[+1]_12 chrXV:340136-340565 1e-09 6_[-1]_64 chrIV:619744-620201 1e-09 54_[-1]_16 chrXI:490784-491237 1e-09 42_[+1]_28 chrXIII:320995-321318 1.5e-09 48_[-1]_22 chrXIII:768184-768637 1.5e-09 16_[-1]_54 chrXII:656742-657176 1.5e-09 32_[-1]_38 chrX:542624-542724 2.3e-09 54_[-1]_16 chrXV:288038-288516 2.3e-09 15_[+1]_55 chrXIII:837750-838224 2.3e-09 41_[+1]_29 chrIV:946156-946628 2.3e-09 20_[+1]_50 chrXVI:55834-56512 3e-09 53_[-1]_17 chrX:415715-415815 3e-09 7_[-1]_63 chrVI:157726-158192 6.1e-09 14_[-1]_56 chrIV:1256755-1257251 1e-08 62_[-1]_8 chrX:517672-517772 1.5e-08 [-1]_70 chrXV:710034-710517 1.5e-08 9_[+1]_61 chrX:541350-541450 1.7e-08 53_[+1]_17 chrXII:426940-427432 1.7e-08 29_[+1]_41 chrXIII:463333-463864 1.7e-08 39_[+1]_31 chrX:204530-204630 1.7e-08 65_[+1]_5 chrII:405682-406324 1.7e-08 40_[+1]_30 chrXVI:435629-436172 1.1e-07 50_[-1]_20 chrVII:483207-483809 1.3e-07 18_[+1]_52 chrVII:700145-701262 3.4e-07 65_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAABCDKRAGRTCMBSGGTTCGABYCCSVK MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YAABCDKRAGRTCMBSGGTTCGABYCCSVK width=30 seqs=78 chrXIII:480390-480830 ( 69) TAATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrXI:202840-203315 ( 7) TAATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrVII:122074-122524 ( 55) TAATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrV:435609-435997 ( 7) TAATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrIV:1201550-1202104 ( 8) TAATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrVII:185535-185951 ( 29) TAATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrX:414801-414901 ( 30) TAATCATAAGGTTAGGGGTTCGAGCCCCCT 1 chrX:355156-355256 ( 23) TAATCAGAAGATTATGGGTTCGACCCCCAT 1 chrIV:568719-569187 ( 13) TAATCAGAAGATTATGGGTTCGACCCCCAT 1 chrVII:736197-736528 ( 62) TAATCAGAAGATTATGGGTTCGACCCCCAT 1 chrXI:162346-162709 ( 18) TAATCAGAAGATTATGGGTTCGACCCCCAT 1 chrXIII:131652-132073 ( 21) TAATCAGAAGATTATGGGTTCGACCCCCAT 1 chrVII:405318-405745 ( 23) TAATCAGAAGATTATGGGTTCGACCCCCAT 1 chrX:374203-374303 ( 47) TAATCAGAAGATTATGGGTTCGACCCCCAT 1 chrII:197291-197855 ( 7) TAACGCGGGGATCAGCGGTTCGATCCCGCT 1 chrV:551056-551554 ( 38) TAACGCGGGGATCAGCGGTTCGATCCCGCT 1 chrXIV:569682-570152 ( 8) TAACGCGGGGATCAGCGGTTCGATCCCGCT 1 chrXIV:631704-632099 ( 3) GGTGCGGGAGGTCCCGGGTTCGAGTCCCGG 1 chrIII:123331-123832 ( 54) GGTGCGGGAGGTCCCGGGTTCGAGTCCCGG 1 chrV:487104-487614 ( 30) TCACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrXIII:290498-291154 ( 59) TCACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrVII:401393-401749 ( 14) TCACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrX:115623-115723 ( 65) TCACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrXVI:209985-210452 ( 32) TCACCGTGGAGACCGGGGTTCGACTCCCCG 1 chrXV:854019-854421 ( 25) CAAGGAAGAGGTCATCGGTTCGATTCCGGT 1 chrXII:214711-215149 ( 11) CAAGGAAGAGGTCATCGGTTCGATTCCGGT 1 chrX:538381-538481 ( 4) TAAGGAGAAGACTGCGGGTTCGAGTCCCGT 1 chrXI:307963-308422 ( 10) CACGCAGAACGTCCCCAGTTCGATCCTGGG 1 chrVIII:85197-85503 ( 6) CACGCAGAACGTCCCCAGTTCGATCCTGGG 1 chrXIII:372214-372688 ( 52) CACGCAGAACGTCCCCAGTTCGATCCTGGG 1 chrV:438516-438945 ( 56) CACGCAGAACGTCCCCAGTTCGATCCTGGG 1 chrXII:687661-688129 ( 22) CACGCAGAACGTCCCCAGTTCGATCCTGGG 1 chrV:469165-469869 ( 26) CACGCAGAACGTCCCCAGTTCGATCCTGGG 1 chrXIII:420326-420841 ( 63) CACGCAGAACGTCCCCAGTTCGATCCTGGG 1 chrVII:823291-823704 ( 71) CACGCAGAACGTCCCCAGTTCGATCCTGGG 1 chrXVI:860209-860670 ( 23) CCATCGTTGGGCCCCCGGTTCGATTCCGGG 1 chrVI:162042-162521 ( 30) CCATCGTTGGGCCCCCGGTTCGATTCCGGG 1 chrX:531613-531713 ( 2) CCATCGTTGGGCCCCCGGTTCGATTCCGGG 1 chrIV:488430-489201 ( 40) CACGGCGAAGATCCCGAGTTCGAACCTCGG 1 chrII:326605-327043 ( 26) CACGGCGAAGATCCCGAGTTCGAACCTCGG 1 chrVI:101160-101762 ( 30) CATGCGAGAGGCCCTGGGTTCAATTCCCAG 1 chrXV:980519-981013 ( 34) CATGCGAGAGGCCCTGGGTTCAATTCCCAG 1 chrIV:645009-645365 ( 24) TGATCCGGACAACCCCGGTTCGAATCCGGG 1 chrII:350630-351092 ( 50) TGATCCGGACAACCCCGGTTCGAATCCGGG 1 chrIX:325562-326073 ( 16) TAATGTGGAGATCATCGGTTCAAATCCGAT 1 chrIV:434072-434508 ( 32) TAATGTGGAGATCATCGGTTCAAATCCGAT 1 chrIII:295294-295818 ( 13) TAATGTGGAGATCATCGGTTCAAATCCGAT 1 chrVII:115295-115764 ( 67) ATACCGAAATGTCAGGGGTTCGAGCCCCCT 1 chrXII:875205-875634 ( 65) ATACCGAAATGTCAGGGGTTCGAGCCCCCT 1 chrVII:730971-731381 ( 47) TAATCGCAAGATCGTGAGTTCAACCCTCAC 1 chrXIV:632427-632873 ( 35) TAATCGCAAGATCGTGAGTTCAACCCTCAC 1 chrXII:975811-976240 ( 16) TAATCGCAAGATCGTGAGTTCAACCCTCAC 1 chrXI:74430-74947 ( 22) TAATCGCAAGATCGTGAGTTCAACCCTCAC 1 chrXV:976190-976704 ( 59) TAATCTGAAGGTCGAGAGTTCGAACCTCCC 1 chrXV:340136-340565 ( 7) GAACCAGAAGATTCCAGGTTCAAGTCCTGG 1 chrIV:619744-620201 ( 55) GAACCAGAAGATTCCAGGTTCAAGTCCTGG 1 chrXI:490784-491237 ( 43) GAACCAGAAGATTCCAGGTTCAAGTCCTGG 1 chrXIII:320995-321318 ( 49) CATGGGAGAGGTCTCCGGTTCGATTCCGGA 1 chrXIII:768184-768637 ( 17) CATGGGAGAGGTCTCCGGTTCGATTCCGGA 1 chrXII:656742-657176 ( 33) CATGGGAGAGGTCTCCGGTTCGATTCCGGA 1 chrX:542624-542724 ( 55) AAATCTTGAGATCGGGCGTTCGACTCGCCC 1 chrXV:288038-288516 ( 16) AAATCTTGAGATCGGGCGTTCGACTCGCCC 1 chrXIII:837750-838224 ( 42) AAATCTTGAGATCGGGCGTTCGACTCGCCC 1 chrIV:946156-946628 ( 21) AAATCTTGAGATCGGGCGTTCGACTCGCCC 1 chrXVI:55834-56512 ( 54) CAATCGAAGGGTTGCAGGTTCAATTCCTGT 1 chrX:415715-415815 ( 8) CAATCGAAGGGTTGCAGGTTCAATTCCTGT 1 chrVI:157726-158192 ( 15) TTATCTGGAGGTCCTGTGTTCGATCCACAG 1 chrIV:1256755-1257251 ( 63) CCAAGCATGGGGCCCGGGTTCGATTCCCGG 1 chrX:517672-517772 ( 1) TAACCCTGATGTCCTCGGATCGAAACCGAG 1 chrXV:710034-710517 ( 10) TAACCCTGATGTCCTCGGATCGAAACCGAG 1 chrX:541350-541450 ( 54) TCGCGTGCCAGATCGGGGTTCAATTCCCCG 1 chrXII:426940-427432 ( 30) TCGCGTGCCAGATCGGGGTTCAATTCCCCG 1 chrXIII:463333-463864 ( 40) TCGCGTGCCAGATCGGGGTTCAATTCCCCG 1 chrX:204530-204630 ( 66) TCGCGTGCCAGATCGGGGTTCAATTCCCCG 1 chrII:405682-406324 ( 41) TCGCGTGCCAGATCGGGGTTCAATTCCCCG 1 chrXVI:435629-436172 ( 51) AAATCTGTTGGTCCTTAGTTCGATCCTGAG 1 chrVII:483207-483809 ( 19) TTATCGCCGGATCTCCGCTTCGAGACCGGG 1 chrVII:700145-701262 ( 66) TCTCTTCGGAGGCGCGGGTTCAAACCCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAABCDKRAGRTCMBSGGTTCGABYCCSVK MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 10.5498 E= 1.0e-337 -175 58 -162 87 122 -4 -194 -256 122 -62 -162 -156 -456 45 38 61 -1293 189 38 -456 25 -62 64 -56 -98 -136 134 -17 65 -136 96 -224 125 -162 6 -456 -110 -62 178 -256 35 -1293 164 -1293 -98 -136 -294 130 -1293 178 -1293 8 2 126 -24 -256 -456 91 76 -10 -224 81 155 -456 -56 -194 189 -456 -1293 -394 232 -1293 -356 -1293 -1293 169 -1293 -1293 -1293 172 -1293 234 -1293 -1293 -24 -1293 191 -1293 172 -1293 -1293 -1293 -110 38 6 39 -297 126 -1293 69 -1293 234 -1293 -1293 -456 189 -194 -56 -1293 155 86 -224 -24 81 101 -1293 -297 -62 130 19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAABCDKRAGRTCMBSGGTTCGABYCCSVK MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 78 E= 1.0e-337 0.089744 0.294872 0.064103 0.551282 0.705128 0.192308 0.051282 0.051282 0.705128 0.128205 0.064103 0.102564 0.012821 0.269231 0.256410 0.461538 0.000000 0.730769 0.256410 0.012821 0.358974 0.128205 0.307692 0.205128 0.153846 0.076923 0.500000 0.269231 0.474359 0.076923 0.384615 0.064103 0.717949 0.064103 0.205128 0.012821 0.141026 0.128205 0.679487 0.051282 0.384615 0.000000 0.615385 0.000000 0.153846 0.076923 0.025641 0.743590 0.000000 0.679487 0.000000 0.320513 0.307692 0.474359 0.166667 0.051282 0.012821 0.371795 0.333333 0.282051 0.064103 0.346154 0.576923 0.012821 0.205128 0.051282 0.730769 0.012821 0.000000 0.012821 0.987179 0.000000 0.025641 0.000000 0.000000 0.974359 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.256410 0.000000 0.743590 0.000000 1.000000 0.000000 0.000000 0.000000 0.141026 0.256410 0.205128 0.397436 0.038462 0.474359 0.000000 0.487179 0.000000 1.000000 0.000000 0.000000 0.012821 0.730769 0.051282 0.205128 0.000000 0.576923 0.358974 0.064103 0.256410 0.346154 0.397436 0.000000 0.038462 0.128205 0.487179 0.346154 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAABCDKRAGRTCMBSGGTTCGABYCCSVK MEME-1 regular expression -------------------------------------------------------------------------------- [TC]AA[TCG][CG][AGT][GT][AG][AG]G[GA]T[CT][CA][CGT][GC][GA]GTTC[GA]A[TCG][TC]C[CT][CG][GCA][GT] -------------------------------------------------------------------------------- Time 350.92 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCCBAGTKGKTWRAGSS MEME-2 width = 19 sites = 73 llr = 1143 E-value = 4.4e-188 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCCBAGTKGKTWRAGSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A :2:::1a1::::2566::: pos.-specific C :::764:::2::2::1:55 probability G :8a:23:9:5a51:32944 matrix T a::332::a3:564:11:: bits 2.3 * * 2.1 * * 1.9 * * * 1.6 *** *** * * Relative 1.4 **** *** * * Entropy 1.2 **** *** * * (22.6 bits) 0.9 **** *** ** *** 0.7 ***** *** ** * *** 0.5 ***** ****** ** *** 0.2 ******************* 0.0 ------------------- Multilevel TGGCCCAGTGGGTAAAGCC consensus TTG T T TG GG sequence T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCBAGTKGKTWRAGSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------- chrXII:731931-732339 + 12 1.03e-10 AATGGGAGTT TGGCCGAGTGGTTTAAGGC GTCAGATTTA chrX:617715-617815 + 2 1.03e-10 T TGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXII:1051941-1052338 - 30 1.28e-10 CATGGTCTCT TGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrV:443067-443469 - 32 1.28e-10 TTTGGTCTCT TGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrV:551056-551554 - 78 1.28e-10 CTCT TGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXIV:569682-570152 - 48 1.28e-10 AGTGGTCTCT TGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrII:226873-227363 + 14 2.57e-10 CGAGGCAACT TGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:437582-437969 + 54 2.57e-10 TAAGGCAACT TGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:1150693-1151178 - 31 2.57e-10 TCAGTCCCAG TGGCCGAGTGGTTAAGGCG ATGCCTGCTA chrXII:167750-168234 - 58 2.57e-10 TATGGCAACT TGGCCGAGTGGTTAAGGCG AAAGATTAGA chrI:182353-182746 - 79 2.57e-10 ACT TGGCCGAGTGGTTAAGGCG AAAGATTAGA chrVII:561496-561918 - 61 2.57e-10 ATTGGCAACT TGGCCGAGTGGTTAAGGCG AAAGATTAGA chrII:347427-347809 + 42 4.69e-10 TACGGAGGGT TGGCCGAGTGGTCTAAGGC GGCAGACTTA chrVII:700145-701262 + 29 4.69e-10 ATTGGTACTC TGGCCGAGTGGTCTAAGGC GTCAGGTCGA chrIV:519576-519900 + 62 4.69e-10 TACGGAGGGT TGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXIV:725994-726381 - 55 4.69e-10 TTTGGAGGGT TGGCCGAGTGGTCTAAGGC GGCAGACTTA chrII:9381-9884 + 8 4.69e-10 GGAGGGT TGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXI:83961-84439 + 65 4.69e-10 TATGGAGGGT TGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXII:962850-963305 - 3 4.69e-10 GACGGAGGGT TGGCCGAGTGGTCTAAGGC GG chrX:424238-424338 - 66 4.69e-10 GATGGAGGGT TGGCCGAGTGGTCTAAGGC GGCAGACTTA chrVII:730971-731381 + 18 2.95e-09 AAAGACTCCA TGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXIV:632427-632873 + 6 2.95e-09 CTCCA TGGCCAAGTTGGTTAAGGC GTGCGACTGT chrIII:127546-127894 + 53 2.95e-09 AATGACTCCA TGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXII:975811-976240 - 56 2.95e-09 AAAGACTCCA TGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXIV:104582-105041 + 51 5.17e-09 TGAGCTTCTA TGGCCAAGTTGGTAAGGCG CCACACTAGT chrIV:434072-434508 - 71 5.17e-09 GAAGCTTCTA TGGCCAAGTTGGTAAGGCG CCACACTAGT chrXV:353916-354297 - 32 5.17e-09 ACTGCTTCTA TGGCCAAGTTGGTAAGGCG CCACACTAGT chrXV:854019-854421 - 64 6.74e-09 TCAGGGCACA TGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrXII:214711-215149 - 50 6.74e-09 TTAGGGCACA TGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrXIII:768184-768637 - 56 1.58e-08 AATGGGCGTG TGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrX:197204-197304 - 11 1.58e-08 TTAGGGCGTG TGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXII:656742-657176 - 72 1.58e-08 ATTGGGCGTG TGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrVII:115295-115764 + 16 1.77e-08 TCATCCTTGT TAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrIV:359391-359790 + 44 1.77e-08 TCATCCTTGT TAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXII:875205-875634 + 14 1.77e-08 TCATCCTTGT TAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXI:458257-458849 + 61 3.04e-08 AGTGGTTGTT TGGCCGAGCGGTCTAAGGC GCCTGATTCA chrXIV:442791-443269 + 33 3.04e-08 AGTGGTTGTT TGGCCGAGCGGTCTAAGGC GCCTGATTCA chrXI:307963-308422 - 50 3.38e-08 AGTGGTTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVIII:85197-85503 - 46 3.38e-08 TTTGGTTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrV:438516-438945 + 27 3.38e-08 TTAGGTTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXII:687661-688129 - 62 3.38e-08 ATAGGTTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrX:378167-378267 + 59 3.38e-08 ATAGGTTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:823291-823704 + 42 3.38e-08 AGTGGTTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:122074-122524 + 27 8.01e-08 TTAGCCTTGT TGGCGCAATCGGTAGCGCG TATGACTCTT chrV:435609-435997 - 46 8.01e-08 AGAGCCTTGT TGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:185535-185951 - 68 8.01e-08 ATAGCCTTGT TGGCGCAATCGGTAGCGCG TATGACTCTT chrX:414801-414901 + 2 8.01e-08 T TGGCGCAATCGGTAGCGCG TATGACTCTT chrXVI:581824-582267 + 74 8.01e-08 AGAGCCTTGT TGGCGCAATCGGTAGCGCG TATGACTC chrVIII:237760-238111 - 29 1.14e-07 TAAGCGGATT TAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXVI:560106-560469 - 27 1.14e-07 TGAGCGGATT TAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVI:157726-158192 - 73 1.14e-07 AAGCGGATT TAGCTCAGTTGGGAGAGCG CCAGACTGAA chrIV:884227-884572 + 19 1.46e-07 AATGCTCGTG TAGCTCAGTGGTTAGAGCT TCGTGCTTAT chrXV:340136-340565 - 46 1.46e-07 CTGTTCCTCG TGGCCCAATGGTCACGGCG TCTGGCTACG chrX:233716-233816 + 49 1.46e-07 TTGTTCCTCG TGGCCCAATGGTCACGGCG TCTGGCTACG chrXII:605132-605623 - 80 1.46e-07 TG TAGCTCAGTGGTTAGAGCT TCGTGCTTAT chrXI:490784-491237 + 15 1.46e-07 TTGTTCCTCG TGGCCCAATGGTCACGGCG TCTGGCTACG chrIV:488430-489201 - 80 2.01e-07 AA TGGTCCAGTGGTTCAAGAC GTCGCCTTTA chrII:326605-327043 - 66 2.01e-07 CCGGGTCCAA TGGTCCAGTGGTTCAAGAC GTCGCCTTTA chrVII:845342-845971 + 50 2.17e-07 CAAGCGCAAG TGGTTTAGTGGTAAAATCC AACGTTGCCA chrIV:992630-993025 + 62 2.17e-07 TGAGCGCAAG TGGTTTAGTGGTAAAATCC AACGTTGCCA chrIV:83339-83762 + 55 2.17e-07 TTAGCGCAAG TGGTTTAGTGGTAAAATCC AACGTTGCCA chrXIII:183791-184181 - 7 2.17e-07 ATCGCGCAAG TGGTTTAGTGGTAAAATCC AACGTT chrVI:162042-162521 + 4 2.17e-07 AAG TGGTTTAGTGGTAAAATCC AACGTTGCCA chrVII:930857-931187 - 26 2.17e-07 TAAGCGCAAG TGGTTTAGTGGTAAAATCC AACGTTGCCA chrXV:976190-976704 + 31 2.52e-07 TGCGCTTCAG TAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrX:422648-422748 + 45 2.52e-07 TATGCTTCAG TAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrIV:1175618-1176027 + 64 2.52e-07 AAAGCTTCAG TAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrVIII:556191-557213 + 9 8.30e-07 GGTAATGG TAGTGGAGTTGGATATGGG TAATTGGAGG chrXIII:195938-196399 - 27 8.79e-07 CAAGGGCGTG TGGTCTAGTGGTATGATTC TCGCTTTGGG chrI:138984-139329 + 53 8.79e-07 TACGGGCGTG TGGTCTAGTGGTATGATTC TCGCTTTGGG chrXV:464273-464661 + 40 8.79e-07 CAAGGGCGTG TGGTCTAGTGGTATGATTC TCGCTTTGGG chrXIV:6492-7133 - 13 1.76e-06 GGGAGTGGTA TGGTTGAGTGGGGCAGGGT AACGAGTGGG chrII:592301-593201 + 76 2.23e-06 ACCTTCATGA TGGCTCAGTCGTCTATTCA CACTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCBAGTKGKTWRAGSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:731931-732339 1e-10 11_[+2]_70 chrX:617715-617815 1e-10 1_[+2]_80 chrXII:1051941-1052338 1.3e-10 29_[-2]_52 chrV:443067-443469 1.3e-10 31_[-2]_50 chrV:551056-551554 1.3e-10 77_[-2]_4 chrXIV:569682-570152 1.3e-10 47_[-2]_34 chrII:226873-227363 2.6e-10 13_[+2]_68 chrIV:437582-437969 2.6e-10 53_[+2]_28 chrIV:1150693-1151178 2.6e-10 30_[-2]_51 chrXII:167750-168234 2.6e-10 57_[-2]_24 chrI:182353-182746 2.6e-10 78_[-2]_3 chrVII:561496-561918 2.6e-10 60_[-2]_21 chrII:347427-347809 4.7e-10 41_[+2]_40 chrVII:700145-701262 4.7e-10 28_[+2]_53 chrIV:519576-519900 4.7e-10 61_[+2]_20 chrXIV:725994-726381 4.7e-10 54_[-2]_27 chrII:9381-9884 4.7e-10 7_[+2]_74 chrXI:83961-84439 4.7e-10 64_[+2]_17 chrXII:962850-963305 4.7e-10 2_[-2]_79 chrX:424238-424338 4.7e-10 65_[-2]_16 chrVII:730971-731381 2.9e-09 17_[+2]_64 chrXIV:632427-632873 2.9e-09 5_[+2]_76 chrIII:127546-127894 2.9e-09 52_[+2]_29 chrXII:975811-976240 2.9e-09 55_[-2]_26 chrXIV:104582-105041 5.2e-09 50_[+2]_31 chrIV:434072-434508 5.2e-09 70_[-2]_11 chrXV:353916-354297 5.2e-09 31_[-2]_50 chrXV:854019-854421 6.7e-09 63_[-2]_18 chrXII:214711-215149 6.7e-09 49_[-2]_32 chrXIII:768184-768637 1.6e-08 55_[-2]_26 chrX:197204-197304 1.6e-08 10_[-2]_71 chrXII:656742-657176 1.6e-08 71_[-2]_10 chrVII:115295-115764 1.8e-08 15_[+2]_66 chrIV:359391-359790 1.8e-08 43_[+2]_38 chrXII:875205-875634 1.8e-08 13_[+2]_68 chrXI:458257-458849 3e-08 60_[+2]_21 chrXIV:442791-443269 3e-08 32_[+2]_49 chrXI:307963-308422 3.4e-08 49_[-2]_32 chrVIII:85197-85503 3.4e-08 45_[-2]_36 chrV:438516-438945 3.4e-08 26_[+2]_55 chrXII:687661-688129 3.4e-08 61_[-2]_20 chrX:378167-378267 3.4e-08 58_[+2]_23 chrVII:823291-823704 3.4e-08 41_[+2]_40 chrVII:122074-122524 8e-08 26_[+2]_55 chrV:435609-435997 8e-08 45_[-2]_36 chrVII:185535-185951 8e-08 67_[-2]_14 chrX:414801-414901 8e-08 1_[+2]_80 chrXVI:581824-582267 8e-08 73_[+2]_8 chrVIII:237760-238111 1.1e-07 28_[-2]_53 chrXVI:560106-560469 1.1e-07 26_[-2]_55 chrVI:157726-158192 1.1e-07 72_[-2]_9 chrIV:884227-884572 1.5e-07 18_[+2]_63 chrXV:340136-340565 1.5e-07 45_[-2]_36 chrX:233716-233816 1.5e-07 48_[+2]_33 chrXII:605132-605623 1.5e-07 79_[-2]_2 chrXI:490784-491237 1.5e-07 14_[+2]_67 chrIV:488430-489201 2e-07 79_[-2]_2 chrII:326605-327043 2e-07 65_[-2]_16 chrVII:845342-845971 2.2e-07 49_[+2]_32 chrIV:992630-993025 2.2e-07 61_[+2]_20 chrIV:83339-83762 2.2e-07 54_[+2]_27 chrXIII:183791-184181 2.2e-07 6_[-2]_75 chrVI:162042-162521 2.2e-07 3_[+2]_78 chrVII:930857-931187 2.2e-07 25_[-2]_56 chrXV:976190-976704 2.5e-07 30_[+2]_51 chrX:422648-422748 2.5e-07 44_[+2]_37 chrIV:1175618-1176027 2.5e-07 63_[+2]_18 chrVIII:556191-557213 8.3e-07 8_[+2]_73 chrXIII:195938-196399 8.8e-07 26_[-2]_55 chrI:138984-139329 8.8e-07 52_[+2]_29 chrXV:464273-464661 8.8e-07 39_[+2]_42 chrXIV:6492-7133 1.8e-06 12_[-2]_69 chrII:592301-593201 2.2e-06 75_[+2]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCBAGTKGKTWRAGSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCCBAGTKGKTWRAGSS width=19 seqs=73 chrXII:731931-732339 ( 12) TGGCCGAGTGGTTTAAGGC 1 chrX:617715-617815 ( 2) TGGCCGAGTGGTTTAAGGC 1 chrXII:1051941-1052338 ( 30) TGGCCCAGTTGGTTAAGGC 1 chrV:443067-443469 ( 32) TGGCCCAGTTGGTTAAGGC 1 chrV:551056-551554 ( 78) TGGCCCAGTTGGTTAAGGC 1 chrXIV:569682-570152 ( 48) TGGCCCAGTTGGTTAAGGC 1 chrII:226873-227363 ( 14) TGGCCGAGTGGTTAAGGCG 1 chrIV:437582-437969 ( 54) TGGCCGAGTGGTTAAGGCG 1 chrIV:1150693-1151178 ( 31) TGGCCGAGTGGTTAAGGCG 1 chrXII:167750-168234 ( 58) TGGCCGAGTGGTTAAGGCG 1 chrI:182353-182746 ( 79) TGGCCGAGTGGTTAAGGCG 1 chrVII:561496-561918 ( 61) TGGCCGAGTGGTTAAGGCG 1 chrII:347427-347809 ( 42) TGGCCGAGTGGTCTAAGGC 1 chrVII:700145-701262 ( 29) TGGCCGAGTGGTCTAAGGC 1 chrIV:519576-519900 ( 62) TGGCCGAGTGGTCTAAGGC 1 chrXIV:725994-726381 ( 55) TGGCCGAGTGGTCTAAGGC 1 chrII:9381-9884 ( 8) TGGCCGAGTGGTCTAAGGC 1 chrXI:83961-84439 ( 65) TGGCCGAGTGGTCTAAGGC 1 chrXII:962850-963305 ( 3) TGGCCGAGTGGTCTAAGGC 1 chrX:424238-424338 ( 66) TGGCCGAGTGGTCTAAGGC 1 chrVII:730971-731381 ( 18) TGGCCAAGTTGGTTAAGGC 1 chrXIV:632427-632873 ( 6) TGGCCAAGTTGGTTAAGGC 1 chrIII:127546-127894 ( 53) TGGCCAAGTTGGTTAAGGC 1 chrXII:975811-976240 ( 56) TGGCCAAGTTGGTTAAGGC 1 chrXIV:104582-105041 ( 51) TGGCCAAGTTGGTAAGGCG 1 chrIV:434072-434508 ( 71) TGGCCAAGTTGGTAAGGCG 1 chrXV:353916-354297 ( 32) TGGCCAAGTTGGTAAGGCG 1 chrXV:854019-854421 ( 64) TGGCGCAGTTGGTAGCGCG 1 chrXII:214711-215149 ( 50) TGGCGCAGTTGGTAGCGCG 1 chrXIII:768184-768637 ( 56) TGGCGTAGTCGGTAGCGCG 1 chrX:197204-197304 ( 11) TGGCGTAGTCGGTAGCGCG 1 chrXII:656742-657176 ( 72) TGGCGTAGTCGGTAGCGCG 1 chrVII:115295-115764 ( 16) TAGCTCAGTTGGTAGAGCG 1 chrIV:359391-359790 ( 44) TAGCTCAGTTGGTAGAGCG 1 chrXII:875205-875634 ( 14) TAGCTCAGTTGGTAGAGCG 1 chrXI:458257-458849 ( 61) TGGCCGAGCGGTCTAAGGC 1 chrXIV:442791-443269 ( 33) TGGCCGAGCGGTCTAAGGC 1 chrXI:307963-308422 ( 50) TGGTCTAGTCGGTTATGGC 1 chrVIII:85197-85503 ( 46) TGGTCTAGTCGGTTATGGC 1 chrV:438516-438945 ( 27) TGGTCTAGTCGGTTATGGC 1 chrXII:687661-688129 ( 62) TGGTCTAGTCGGTTATGGC 1 chrX:378167-378267 ( 59) TGGTCTAGTCGGTTATGGC 1 chrVII:823291-823704 ( 42) TGGTCTAGTCGGTTATGGC 1 chrVII:122074-122524 ( 27) TGGCGCAATCGGTAGCGCG 1 chrV:435609-435997 ( 46) TGGCGCAATCGGTAGCGCG 1 chrVII:185535-185951 ( 68) TGGCGCAATCGGTAGCGCG 1 chrX:414801-414901 ( 2) TGGCGCAATCGGTAGCGCG 1 chrXVI:581824-582267 ( 74) TGGCGCAATCGGTAGCGCG 1 chrVIII:237760-238111 ( 29) TAGCTCAGTTGGGAGAGCG 1 chrXVI:560106-560469 ( 27) TAGCTCAGTTGGGAGAGCG 1 chrVI:157726-158192 ( 73) TAGCTCAGTTGGGAGAGCG 1 chrIV:884227-884572 ( 19) TAGCTCAGTGGTTAGAGCT 1 chrXV:340136-340565 ( 46) TGGCCCAATGGTCACGGCG 1 chrX:233716-233816 ( 49) TGGCCCAATGGTCACGGCG 1 chrXII:605132-605623 ( 80) TAGCTCAGTGGTTAGAGCT 1 chrXI:490784-491237 ( 15) TGGCCCAATGGTCACGGCG 1 chrIV:488430-489201 ( 80) TGGTCCAGTGGTTCAAGAC 1 chrII:326605-327043 ( 66) TGGTCCAGTGGTTCAAGAC 1 chrVII:845342-845971 ( 50) TGGTTTAGTGGTAAAATCC 1 chrIV:992630-993025 ( 62) TGGTTTAGTGGTAAAATCC 1 chrIV:83339-83762 ( 55) TGGTTTAGTGGTAAAATCC 1 chrXIII:183791-184181 ( 7) TGGTTTAGTGGTAAAATCC 1 chrVI:162042-162521 ( 4) TGGTTTAGTGGTAAAATCC 1 chrVII:930857-931187 ( 26) TGGTTTAGTGGTAAAATCC 1 chrXV:976190-976704 ( 31) TAGCTCAGTAGGAAGAGCG 1 chrX:422648-422748 ( 45) TAGCTCAGTAGGAAGAGCG 1 chrIV:1175618-1176027 ( 64) TAGCTCAGTAGGAAGAGCG 1 chrVIII:556191-557213 ( 9) TAGTGGAGTTGGATATGGG 1 chrXIII:195938-196399 ( 27) TGGTCTAGTGGTATGATTC 1 chrI:138984-139329 ( 53) TGGTCTAGTGGTATGATTC 1 chrXV:464273-464661 ( 40) TGGTCTAGTGGTATGATTC 1 chrXIV:6492-7133 ( 13) TGGTTGAGTGGGGCAGGGT 1 chrII:592301-593201 ( 76) TGGCTCAGTCGTCTATTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCBAGTKGKTWRAGSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 49200 bayes= 10.2561 E= 4.4e-188 -1283 -1283 -1283 172 -88 -1283 208 -1283 -1283 -1283 234 -1283 -1283 191 -1283 -22 -1283 158 -39 -22 -166 96 47 -30 172 -1283 -1283 -1283 -146 -1283 217 -1283 -1283 -285 -1283 168 -288 6 128 -14 -1283 -1283 234 -1283 -1283 -1283 140 66 -76 -4 -185 93 82 -226 -1283 49 106 -226 74 -1283 93 -53 -15 -146 -1283 -1283 213 -114 -346 147 96 -288 -446 136 115 -288 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCBAGTKGKTWRAGSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 73 E= 4.4e-188 0.000000 0.000000 0.000000 1.000000 0.164384 0.000000 0.835616 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.739726 0.000000 0.260274 0.000000 0.589041 0.150685 0.260274 0.095890 0.383562 0.273973 0.246575 1.000000 0.000000 0.000000 0.000000 0.109589 0.000000 0.890411 0.000000 0.000000 0.027397 0.000000 0.972603 0.041096 0.205479 0.479452 0.273973 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.520548 0.479452 0.178082 0.191781 0.054795 0.575342 0.534247 0.041096 0.000000 0.424658 0.630137 0.041096 0.328767 0.000000 0.575342 0.136986 0.178082 0.109589 0.000000 0.000000 0.863014 0.136986 0.027397 0.547945 0.383562 0.041096 0.013699 0.506849 0.438356 0.041096 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCBAGTKGKTWRAGSS MEME-2 regular expression -------------------------------------------------------------------------------- TGG[CT][CT][CGT]AGT[GTC]G[GT]T[AT][AG]AG[CG][CG] -------------------------------------------------------------------------------- Time 670.68 secs. ******************************************************************************** ******************************************************************************** MOTIF THDTCCGWKATAGTKTAAYGGYYAKMAYR MEME-3 width = 29 sites = 23 llr = 563 E-value = 7.6e-091 ******************************************************************************** -------------------------------------------------------------------------------- Motif THDTCCGWKATAGTKTAAYGGYYAKMAYR MEME-3 Description -------------------------------------------------------------------------------- Simplified A 243:::13:8:a::1:a7:::::a:3a:5 pos.-specific C :31:88111:::::::::3::33::5:7: probability G ::232:7:3:::a:5::3:aa:::5:::3 matrix T 7237:2:551a::a3a::7::77:51:32 bits 2.3 * ** 2.1 * ** 1.9 * ** 1.6 ** **** ** ** * * Relative 1.4 ** **** ** ** * * Entropy 1.2 ** **** ** ** * ** (35.3 bits) 0.9 **** ***** ********** ** 0.7 * **** ******************** 0.5 ** ************************** 0.2 ** ************************** 0.0 ----------------------------- Multilevel TATTCCGTTATAGTGTAATGGTTATCACA consensus CAG AG T GC CC GA TG sequence TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THDTCCGWKATAGTKTAAYGGYYAKMAYR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXII:796993-797366 + 46 7.30e-15 TCCGTAGTTG TCGTCCGATATAGTGTAACGGCTATCACA TCACGCTTTC chrV:487104-487614 - 68 1.49e-14 AATT TAATCCGATATAGTGTAACGGCTATCACA TCACGCTTTC chrXIII:290498-291154 + 22 1.49e-14 CAGTGAAATA TAATCCGATATAGTGTAACGGCTATCACA TCACGCTTTC chrXI:140784-141439 - 3 1.49e-14 CTATCCTTTG TAATCCGATATAGTGTAACGGCTATCACA TC chrIX:370242-370583 + 52 1.49e-14 ATATAGATTA TAATCCGATATAGTGTAACGGCTATCACA TCACGCTTTC chrXVI:209985-210452 - 70 5.88e-14 TA TTGTCCGATATAGTGTAACGGCTATCACA TCACGCTTTC chrX:355156-355256 + 68 2.20e-13 GTGCTTTGTT TCTTCCGTGATAGTTTAATGGTCAGAATG GGCG chrIV:568719-569187 + 58 2.20e-13 GTGCTTTGTT TCTTCCGTGATAGTTTAATGGTCAGAATG GGCGCTTGTC chrX:374203-374303 - 3 2.20e-13 GTGCTTTGTT TCTTCCGTGATAGTTTAATGGTCAGAATG GG chrVII:544411-544901 - 17 2.20e-13 CACAGATATT TCTTCCGTGATAGTTTAATGGTCAGAATG GGCGCTTGTC chrII:405682-406324 + 4 2.20e-13 GTT TCTTCCGTGATAGTTTAATGGTCAGAATG GGCGCTTGTC chrXIII:463333-463864 + 3 8.70e-13 AT TTGTCCGTGATAGTTTAATGGTCAGAATG GGCGCTTGTC chrVII:401393-401749 - 52 1.99e-12 CAGTTAATTT GTTTCCGATATAGTGTAACGGCTATCACA TCACGCTTTC chrX:541350-541450 + 17 2.23e-12 TACAGAAAGA AAATCCGTGATAGTTTAATGGTCAGAATG GGCGCTTGTC chrX:204530-204630 + 29 2.23e-12 AACAACATAA AAATCCGTGATAGTTTAATGGTCAGAATG GGCGCTTGTC chrIX:197386-197765 + 64 5.09e-12 CAAGCTAATC AAATCCGATGTAGTGTAACGGCTATCACA TCACGTTC chrIV:520755-521161 + 61 7.73e-11 TCGTCCATTT TAGGGTCCTATAGTGTAGTGGTTATCACT TTCGGTTTTG chrXII:448488-448969 - 18 9.49e-11 ATCAAGAAGT TCCGGTCCTATAGTGTAGTGGTTATCACT TTCGGTTTTG chrIV:645009-645365 - 62 1.05e-10 ACACAGTTGT TACGGTCCTATAGTGTAGTGGTTATCACT TTCGGTTTTG chrXIII:362856-363268 + 49 1.68e-10 ACAATCCAAG TTTGCCATCTTAGTATAGTGGTTAGTACA CATCGTTGTG chrII:350630-351092 + 13 1.88e-10 CCATCAATAA AAGGGTTTTATAGTGTAGTGGTTATCACT TTCGGTTTTG chrV:207131-207586 + 46 2.09e-10 TTTATATAAG TTCGCCATCTTAGTATAGTGGTTAGTACA CATCGTTGTG chrVII:110438-110928 - 38 2.81e-10 TCAATAATTA CCTGCCATCTTAGTATAGTGGTTAGTACA CATCGTTGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THDTCCGWKATAGTKTAAYGGYYAKMAYR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:796993-797366 7.3e-15 45_[+3]_26 chrV:487104-487614 1.5e-14 67_[-3]_4 chrXIII:290498-291154 1.5e-14 21_[+3]_50 chrXI:140784-141439 1.5e-14 2_[-3]_69 chrIX:370242-370583 1.5e-14 51_[+3]_20 chrXVI:209985-210452 5.9e-14 69_[-3]_2 chrX:355156-355256 2.2e-13 67_[+3]_4 chrIV:568719-569187 2.2e-13 57_[+3]_14 chrX:374203-374303 2.2e-13 2_[-3]_69 chrVII:544411-544901 2.2e-13 16_[-3]_55 chrII:405682-406324 2.2e-13 3_[+3]_68 chrXIII:463333-463864 8.7e-13 2_[+3]_69 chrVII:401393-401749 2e-12 51_[-3]_20 chrX:541350-541450 2.2e-12 16_[+3]_55 chrX:204530-204630 2.2e-12 28_[+3]_43 chrIX:197386-197765 5.1e-12 63_[+3]_8 chrIV:520755-521161 7.7e-11 60_[+3]_11 chrXII:448488-448969 9.5e-11 17_[-3]_54 chrIV:645009-645365 1e-10 61_[-3]_10 chrXIII:362856-363268 1.7e-10 48_[+3]_23 chrII:350630-351092 1.9e-10 12_[+3]_59 chrV:207131-207586 2.1e-10 45_[+3]_26 chrVII:110438-110928 2.8e-10 37_[-3]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THDTCCGWKATAGTKTAAYGGYYAKMAYR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF THDTCCGWKATAGTKTAAYGGYYAKMAYR width=29 seqs=23 chrXII:796993-797366 ( 46) TCGTCCGATATAGTGTAACGGCTATCACA 1 chrV:487104-487614 ( 68) TAATCCGATATAGTGTAACGGCTATCACA 1 chrXIII:290498-291154 ( 22) TAATCCGATATAGTGTAACGGCTATCACA 1 chrXI:140784-141439 ( 3) TAATCCGATATAGTGTAACGGCTATCACA 1 chrIX:370242-370583 ( 52) TAATCCGATATAGTGTAACGGCTATCACA 1 chrXVI:209985-210452 ( 70) TTGTCCGATATAGTGTAACGGCTATCACA 1 chrX:355156-355256 ( 68) TCTTCCGTGATAGTTTAATGGTCAGAATG 1 chrIV:568719-569187 ( 58) TCTTCCGTGATAGTTTAATGGTCAGAATG 1 chrX:374203-374303 ( 3) TCTTCCGTGATAGTTTAATGGTCAGAATG 1 chrVII:544411-544901 ( 17) TCTTCCGTGATAGTTTAATGGTCAGAATG 1 chrII:405682-406324 ( 4) TCTTCCGTGATAGTTTAATGGTCAGAATG 1 chrXIII:463333-463864 ( 3) TTGTCCGTGATAGTTTAATGGTCAGAATG 1 chrVII:401393-401749 ( 52) GTTTCCGATATAGTGTAACGGCTATCACA 1 chrX:541350-541450 ( 17) AAATCCGTGATAGTTTAATGGTCAGAATG 1 chrX:204530-204630 ( 29) AAATCCGTGATAGTTTAATGGTCAGAATG 1 chrIX:197386-197765 ( 64) AAATCCGATGTAGTGTAACGGCTATCACA 1 chrIV:520755-521161 ( 61) TAGGGTCCTATAGTGTAGTGGTTATCACT 1 chrXII:448488-448969 ( 18) TCCGGTCCTATAGTGTAGTGGTTATCACT 1 chrIV:645009-645365 ( 62) TACGGTCCTATAGTGTAGTGGTTATCACT 1 chrXIII:362856-363268 ( 49) TTTGCCATCTTAGTATAGTGGTTAGTACA 1 chrII:350630-351092 ( 13) AAGGGTTTTATAGTGTAGTGGTTATCACT 1 chrV:207131-207586 ( 46) TTCGCCATCTTAGTATAGTGGTTAGTACA 1 chrVII:110438-110928 ( 38) CCTGCCATCTTAGTATAGTGGTTAGTACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THDTCCGWKATAGTKTAAYGGYYAKMAYR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 9.59469 E= 7.6e-091 -80 -218 -218 129 52 82 -1117 -48 1 -60 14 20 -1117 -1117 62 120 -1117 206 -18 -1117 -1117 206 -1117 -80 -121 -60 182 -280 20 -60 -1117 79 -1117 -60 82 79 145 -1117 -218 -121 -1117 -1117 -1117 172 172 -1117 -1117 -1117 -1117 -1117 234 -1117 -1117 -1117 -1117 172 -121 -1117 140 20 -1117 -1117 -1117 172 172 -1117 -1117 -1117 120 -1117 62 -1117 -1117 82 -1117 111 -1117 -1117 234 -1117 -1117 -1117 234 -1117 -1117 82 -1117 111 -1117 82 -1117 111 172 -1117 -1117 -1117 -1117 -1117 128 79 20 140 -1117 -121 172 -1117 -1117 -1117 -1117 172 -1117 20 66 -1117 82 -80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THDTCCGWKATAGTKTAAYGGYYAKMAYR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 23 E= 7.6e-091 0.173913 0.043478 0.043478 0.739130 0.434783 0.347826 0.000000 0.217391 0.304348 0.130435 0.217391 0.347826 0.000000 0.000000 0.304348 0.695652 0.000000 0.826087 0.173913 0.000000 0.000000 0.826087 0.000000 0.173913 0.130435 0.130435 0.695652 0.043478 0.347826 0.130435 0.000000 0.521739 0.000000 0.130435 0.347826 0.521739 0.826087 0.000000 0.043478 0.130435 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.130435 0.000000 0.521739 0.347826 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.695652 0.000000 0.304348 0.000000 0.000000 0.347826 0.000000 0.652174 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.347826 0.000000 0.652174 0.000000 0.347826 0.000000 0.652174 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.478261 0.521739 0.347826 0.521739 0.000000 0.130435 1.000000 0.000000 0.000000 0.000000 0.000000 0.652174 0.000000 0.347826 0.478261 0.000000 0.347826 0.173913 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THDTCCGWKATAGTKTAAYGGYYAKMAYR MEME-3 regular expression -------------------------------------------------------------------------------- T[ACT][TAG][TG]CCG[TA][TG]ATAGT[GT]TA[AG][TC]GG[TC][TC]A[TG][CA]A[CT][AG] -------------------------------------------------------------------------------- Time 979.96 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:326605-327043 8.97e-11 25_[-1(7.98e-11)]_10_[-2(2.01e-07)]_\ 16 chrVIII:385141-386543 5.97e-01 100 chrXV:31118-31667 9.59e-01 100 chrVII:276923-277347 7.67e-01 100 chrXI:326072-327601 3.06e-01 100 chrI:142108-143705 3.49e-02 15_[-2(5.09e-05)]_66 chrIV:1461508-1462017 1.78e-01 100 chrXVI:821660-822273 6.92e-01 100 chrXIII:759650-763113 6.84e-02 100 chrVII:561496-561918 4.54e-08 12_[-1(8.87e-05)]_18_[-2(2.57e-10)]_\ 21 chrVII:453561-453719 7.07e-01 100 chrXI:551774-552372 3.42e-01 100 chrIV:750551-751347 5.79e-01 100 chrIII:82386-82745 9.82e-01 100 chrXVI:404901-406028 8.69e-01 100 chrIV:1175618-1176027 9.01e-04 63_[+2(2.52e-07)]_18 chrXII:11036-11933 3.21e-01 100 chrV:6147-6551 6.89e-01 100 chrXIV:569682-570152 6.18e-15 7_[-1(3.63e-12)]_10_[-2(1.28e-10)]_\ 34 chrIV:1012264-1013867 8.63e-01 100 chrXII:498556-499825 8.78e-01 100 chrIX:370242-370583 2.72e-10 51_[+3(1.49e-14)]_20 chrII:234718-236041 9.86e-01 100 chrXI:591187-592030 6.21e-01 100 chrXVI:75293-76856 7.63e-01 100 chrVII:453883-455025 4.21e-01 100 chrXV:677932-679135 9.58e-01 100 chrXII:231691-234220 1.21e-02 100 chrVII:877367-879083 3.68e-02 37_[-3(2.95e-05)]_34 chrXV:779678-780991 9.72e-01 100 chrXIII:146467-147238 8.22e-01 100 chrV:235244-237159 3.19e-01 100 chrXVI:581824-582267 8.00e-05 73_[+2(8.01e-08)]_8 chrII:405682-406324 1.18e-15 3_[+3(2.20e-13)]_8_[+1(1.73e-08)]_\ 30 chrIV:768283-768959 1.21e-02 30_[-2(3.58e-05)]_51 chrXV:594252-594656 9.34e-01 100 chrIV:946156-946628 1.81e-05 20_[+1(2.31e-09)]_50 chrXIII:861184-861678 5.97e-01 100 chrVII:147994-148998 9.15e-01 100 chrXII:789689-790078 5.09e-01 100 chrVIII:381458-383298 4.29e-01 100 chrX:617715-617815 3.13e-08 1_[+2(1.03e-10)]_80 chrVII:364878-366648 9.62e-01 100 chrVIII:504234-505593 1.94e-01 100 chrXII:930738-931903 8.05e-02 100 chrXIII:258841-259449 2.90e-02 70_[-1(8.87e-05)] chrXIV:252007-252533 4.13e-01 100 chrXIV:715992-716645 3.58e-01 100 chrI:182353-182746 9.59e-08 30_[-1(8.87e-05)]_18_[-2(2.57e-10)]_\ 3 chrXVI:770618-771177 3.91e-01 100 chrXIII:67249-68015 3.87e-01 100 chrIX:68628-69602 9.06e-01 100 chrXV:479591-480389 7.24e-01 100 chrXIII:225387-226910 6.88e-02 100 chrVII:970334-970528 9.13e-01 100 chrXII:36912-37585 9.79e-01 100 chrX:424238-424338 4.91e-08 15_[-1(1.69e-05)]_20_[-2(4.69e-10)]_\ 16 chrVII:73755-74153 1.08e-04 41_[+2(4.84e-06)]_40 chrXVI:209985-210452 5.55e-18 31_[-1(7.36e-12)]_8_[-3(5.88e-14)]_\ 2 chrVI:210311-211120 5.63e-02 100 chrXI:490784-491237 7.56e-10 14_[+2(1.46e-07)]_9_[+1(1.04e-09)]_\ 28 chrXII:875806-876257 3.68e-01 100 chrXII:201661-202672 3.38e-01 100 chrXI:108793-109040 9.83e-01 100 chrV:294959-295639 8.40e-01 100 chrII:87896-88586 9.91e-01 100 chrI:71762-73694 1.72e-01 100 chrXIII:334745-335702 8.34e-01 100 chrXIV:88902-89707 9.66e-01 100 chrXIII:44145-44481 6.42e-01 100 chrXII:605132-605623 2.82e-04 79_[-2(1.46e-07)]_2 chrVIII:74840-75953 9.20e-01 100 chrXI:158276-159878 4.41e-01 100 chrXII:5484-5915 3.34e-01 100 chrXII:1028805-1030281 4.55e-01 100 chrII:644871-645391 9.43e-01 100 chrV:305833-307485 8.71e-04 18_[-3(2.27e-05)]_53 chrII:135938-136277 4.71e-01 100 chrIV:1162907-1164622 4.08e-01 100 chrXII:252503-253473 6.58e-01 100 chrIII:107264-107834 2.27e-01 100 chrXVI:514800-517150 4.36e-01 100 chrVI:157726-158192 4.97e-09 14_[-1(6.15e-09)]_28_[-2(1.14e-07)]_\ 9 chrXIV:675616-676095 3.78e-01 100 chrVII:823291-823704 1.25e-11 41_[+2(3.38e-08)]_10_[+1(3.09e-11)] chrXII:448488-448969 4.68e-08 17_[-3(9.49e-11)]_54 chrXVI:378666-378959 2.57e-01 100 chrXII:954209-954714 6.58e-01 100 chrXV:881360-881534 9.32e-02 100 chrVIII:122369-122619 4.20e-01 100 chrVII:110438-110928 2.31e-07 37_[-3(2.81e-10)]_34 chrXI:99747-99999 6.31e-01 100 chrXV:978671-979581 4.72e-01 100 chrVII:806027-807797 9.41e-01 100 chrXV:110842-111228 1.22e-03 22_[-3(1.41e-06)]_49 chrVII:726941-728194 5.29e-01 100 chrXVI:192990-194629 9.39e-02 100 chrIII:137723-139004 4.52e-01 100 chrXVI:810474-811756 8.25e-01 100 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9.91e-01 100 chrVIII:556191-557213 3.46e-04 8_[+2(8.30e-07)]_73 chrX:75899-75999 6.76e-01 100 chrXIII:158763-160200 5.59e-01 100 chrIV:1300818-1301304 8.82e-01 100 chrII:347427-347809 6.75e-07 41_[+2(4.69e-10)]_40 chrXV:377850-379255 5.62e-01 100 chrIV:884227-884572 2.03e-06 18_[+2(1.46e-07)]_63 chrXI:282811-284888 1.41e-01 100 chrIV:1268766-1269444 9.07e-01 100 chrXII:282622-283987 6.68e-01 100 chrIV:568719-569187 1.11e-19 12_[+1(1.08e-12)]_15_[+3(2.20e-13)]_\ 14 chrV:153053-153320 9.84e-01 100 chrI:71054-71523 2.32e-01 100 chrVII:1050194-1050674 5.68e-01 100 chrXIV:576693-577496 3.77e-01 100 chrIX:438835-439882 3.92e-01 100 chrV:487104-487614 1.49e-18 29_[-1(7.36e-12)]_8_[-3(1.49e-14)]_\ 4 chrIV:1488894-1490819 2.81e-01 100 chrXII:951031-953918 4.50e-01 100 chrX:355156-355256 1.11e-19 22_[+1(1.08e-12)]_15_[+3(2.20e-13)]_\ 4 chrVII:850095-850801 9.28e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************