Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.111327 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.275182 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.078672 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.019544 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background Finished invoke: name: bg status: 0 time: 0.021515 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 805.747214 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 46.3303 Invoking: centrimo -seqlen 483 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.417383 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.241289 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background -primary AGRTCVBSGGTTCGATYCCSV /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.654376 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background -primary DTRGYBYAGTGGKTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.648043 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background -primary AAWAAKA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.509737 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background -primary GCCWTAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.295681 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background -primary CKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.281758 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background -primary CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.376945 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background -primary TCAACAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.285284 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background -primary GGTCTM /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.377959 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background -primary CGTMTGAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.250287 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background -primary ACGATGGS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.291936 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background --motif AGRTCVBSGGTTCGATYCCSV /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa Finished invoke: name: fimo1 status: 0 time: 0.330171 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background --motif DTRGYBYAGTGGKTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa Finished invoke: name: fimo2 status: 0 time: 0.320786 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background --motif AAWAAKA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa Finished invoke: name: fimo3 status: 0 time: 0.20576 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background --motif GCCWTAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa Finished invoke: name: fimo4 status: 0 time: 0.223401 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background --motif CKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa Finished invoke: name: fimo5 status: 0 time: 0.214517 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background --motif CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa Finished invoke: name: fimo6 status: 0 time: 0.239607 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background --motif TCAACAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa Finished invoke: name: fimo7 status: 0 time: 0.231598 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background --motif GGTCTM /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa Finished invoke: name: fimo8 status: 0 time: 0.194708 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background --motif CGTMTGAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa Finished invoke: name: fimo9 status: 0 time: 0.221984 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/background --motif ACGATGGS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/BY4742--MAC1.fa Finished invoke: name: fimo10 status: 0 time: 0.226009 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--MAC1/summary.tsv Finished invoke: name: summary status: 0 time: 0.190828 Done