******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HIR1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:4-1221 1.0000 100 chrI:81878-82304 1.0000 100 chrI:138930-139428 1.0000 100 chrI:141712-143611 1.0000 100 chrI:166008-166926 1.0000 100 chrI:180955-181512 1.0000 100 chrI:182333-183078 1.0000 100 chrI:229120-230180 1.0000 100 chrII:9327-9936 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chrXV:866546-868311 1.0000 100 chrXV:900058-902056 1.0000 100 chrXV:925194-925386 1.0000 100 chrXV:967318-968874 1.0000 100 chrXV:976164-978531 1.0000 100 chrXV:978786-979588 1.0000 100 chrXV:980467-981057 1.0000 100 chrXV:989195-989802 1.0000 100 chrXV:1003400-1005240 1.0000 100 chrXV:1005641-1007199 1.0000 100 chrXV:1025707-1026114 1.0000 100 chrXV:1027830-1029308 1.0000 100 chrXV:1091123-1091290 1.0000 100 chrXVI:55588-56552 1.0000 100 chrXVI:75475-76717 1.0000 100 chrXVI:135442-135861 1.0000 100 chrXVI:172806-174152 1.0000 100 chrXVI:188577-189114 1.0000 100 chrXVI:192998-194568 1.0000 100 chrXVI:209904-210560 1.0000 100 chrXVI:280686-283307 1.0000 100 chrXVI:302579-303051 1.0000 100 chrXVI:338585-339368 1.0000 100 chrXVI:377896-379038 1.0000 100 chrXVI:404492-407134 1.0000 100 chrXVI:435614-436199 1.0000 100 chrXVI:515110-517049 1.0000 100 chrXVI:520136-520584 1.0000 100 chrXVI:559964-560530 1.0000 100 chrXVI:572014-572798 1.0000 100 chrXVI:575109-575570 1.0000 100 chrXVI:581665-582456 1.0000 100 chrXVI:622232-622851 1.0000 100 chrXVI:653639-655609 1.0000 100 chrXVI:689225-689886 1.0000 100 chrXVI:699886-700715 1.0000 100 chrXVI:718449-719288 1.0000 100 chrXVI:731691-732358 1.0000 100 chrXVI:743865-744678 1.0000 100 chrXVI:768917-769477 1.0000 100 chrXVI:775611-776054 1.0000 100 chrXVI:794436-796021 1.0000 100 chrXVI:810428-810918 1.0000 100 chrXVI:819302-820008 1.0000 100 chrXVI:856449-857232 1.0000 100 chrXVI:860135-860691 1.0000 100 chrXVI:880049-880570 1.0000 100 chrXVI:928025-929178 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HIR1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HIR1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HIR1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 565 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 56500 N= 565 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.303 C 0.197 G 0.197 T 0.303 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HIR1/background): A 0.316 C 0.184 G 0.184 T 0.316 ******************************************************************************** ******************************************************************************** MOTIF GRRTCGAACCSVKGAYCTYHNG MEME-1 width = 22 sites = 94 llr = 1675 E-value = 1.6e-346 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRRTCGAACCSVKGAYCTYHNG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :55:::aa::13118:1:132: pos.-specific C ::1:8:::a7532::6735443 probability G a53::a:::144491:1::127 matrix T ::1a2::::2::3:2417422: bits 2.4 * * * 2.2 * * * 2.0 * * * 1.7 * * ** * * * Relative 1.5 * ****** * * Entropy 1.2 * ****** * * * (25.7 bits) 1.0 ** ******* * ** * 0.7 ** ******** ****** * 0.5 ** **************** * 0.2 ********************** 0.0 ---------------------- Multilevel GAATCGAACCCGGGACCTCCCG consensus GG T TGAT T CTATC sequence C TA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTCGAACCSVKGAYCTYHNG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chrXIV:631493-632176 + 74 2.88e-13 GGCGAGCCGG GACTCGAACCCGGGACCTCCCG CACCC chrXVI:880049-880570 + 49 9.18e-11 GTCTCTAGCG GGATCGAACCGCTGATCCCCGC GTTATTAGCA chrXIV:602108-602596 - 50 9.18e-11 GTCTCTAGCG GGATCGAACCGCTGATCCCCGC GTTATTAGCA chrXIV:569621-570134 + 52 9.18e-11 GTCTCTAGCG GGATCGAACCGCTGATCCCCGC GTTATTAGCA chrV:550970-551587 + 69 9.18e-11 GTCTCTAGCG GGATCGAACCGCTGATCCCCGC GTTATTAGCA chrV:442953-443536 + 20 9.18e-11 GTCTCTAGCG GGATCGAACCGCTGATCCCCGC GTTATTAGCA chrIV:667755-668264 + 60 9.18e-11 GTCTCTAGCG GGATCGAACCGCTGATCCCCGC GTTATTAGCA chrII:197198-197871 - 50 9.18e-11 GTCTCTAGCG GGATCGAACCGCTGATCCCCGC GTTATTAGCA chrXVI:622232-622851 + 61 2.26e-10 CGAATTCTGT GGATCGAACACAGGACCTCCAG ATAACTTGAC chrXVI:559964-560530 + 13 2.26e-10 CGAATTCTGT GGATCGAACACAGGACCTCCAG ATAACTTGAC chrXIII:352057-352625 - 46 2.26e-10 CGAATTCTGT GGATCGAACACAGGACCTCCAG ATAACTTGAC chrIV:1095082-1095720 + 31 2.26e-10 CGAACTCTGT GGATCGAACACAGGACCTCCAG ATATCTTGAC chrXV:853991-854439 + 34 3.95e-10 GACGCAACCG GAATCGAACCGATGACCTCTTC CTTGCAAGGG chrXII:214679-215166 + 23 3.95e-10 GACGCAACCG GAATCGAACCGATGACCTCTTC CTTGCAAGGG chrVIII:475537-475921 + 39 3.95e-10 TTCCAACCGA GGATCGAACTCGGGACCTTTGC CGTGTGAAGG chrV:311711-312320 + 70 3.95e-10 GACGCAACCG GAATCGAACCGATGACCTCTTC CTTGCAAGG chrIV:1075263-1075756 + 25 3.95e-10 TTCCAACCGA GGATCGAACTCGGGACCTTTGC CGTGTGAAGG chrVII:779382-779964 - 31 4.52e-10 AGCGGTACGA GAATCGAACCCGTGTCCCCACC TTGGAAGGGT chrXIII:768166-768675 + 11 5.16e-10 GACGAGTCCG GAATCGAACCGGAGACCTCTCC CATGCTAAGG chrXIII:420313-420933 + 27 5.16e-10 ATTTCGCCCA GGATCGAACTGGGGACGTTCTG CGTGTTAAGC chrXIII:372215-372749 + 25 5.16e-10 ATTTCGCCCA GGATCGAACTGGGGACGTTCTG CGTGTTAAGC chrXIII:320932-321384 + 51 5.16e-10 GACGAGTCCG GAATCGAACCGGAGACCTCTCC CATGCTAAGG chrXII:656655-657196 + 71 5.16e-10 GACGAGTCCG GAATCGAACCGGAGACCTCTCC CATGCTAA chrXI:517737-518357 - 30 5.16e-10 GACGAGTCCG GAATCGAACCGGAGACCTCTCC CATGCTAAGG chrXI:379469-380018 - 27 5.16e-10 ATTTCGCCCA GGATCGAACTGGGGACGTTCTG CGTGTTAAGC chrXI:307935-308443 + 17 5.16e-10 ATTTCGCCCA GGATCGAACTGGGGACGTTCTG CGTGTTAAGC chrX:197093-197625 + 16 5.16e-10 GACGAGTCCG GAATCGAACCGGAGACCTCTCC CATGCTAAGG chrVIII:85011-85595 + 57 5.16e-10 ATTTCGCCCA GGATCGAACTGGGGACGTTCTG CGTGTTAAGC chrVII:412097-412585 + 15 5.16e-10 ATTTCGCCCA GGATCGAACTGGGGACGTTCTG CGTGTTAAGC chrV:469247-469780 - 34 5.16e-10 ATTTCGCCCA GGATCGAACTGGGGACGTTCTG CGTGTTAAGC chrXVI:209904-210560 + 22 9.75e-10 CCGATACGGG GAGTCGAACCCCGGTCTCCACG GTGAAAGCGT chrXV:980467-981057 - 42 9.75e-10 GGCGAGCTGG GAATTGAACCCAGGGCCTCTCG CATGCTTTGT chrVIII:388623-389213 + 37 9.75e-10 GGCGAGCTGG GAATTGAACCCAGGGCCTCTCG CATGCTTTGT chrVII:541581-542183 - 56 9.75e-10 CCGATACGGG GAGTCGAACCCCGGTCTCCACG GTGAAAGCGT chrVII:401334-401803 + 21 9.75e-10 CCGATACGGG GAGTCGAACCCCGGTCTCCACG GTGAAAGCGT chrV:486924-487850 + 6 9.75e-10 ACGGG GAGTCGAACCCCGGTCTCCACG GTGAAAGCGT chrIX:370212-370695 - 52 9.75e-10 CCGATACGGG GAGTCGAACCCCGGTCTCCACG GTGAAAGCGT chrIII:82205-82809 + 17 9.75e-10 CCGATACGGG GAGTCGAACCCCGGTCTCCACG GTGAAAGCGT chrII:644978-645460 - 36 9.75e-10 CCGATACGGG GAGTCGAACCCCGGTCTCCACG GTGAAAGCGT chrXVI:860135-860691 - 53 1.10e-09 CGCAAGCCCG GAATCGAACCGGGGGCCCAACG ATGGCAACGT chrXIII:183652-184211 + 29 1.10e-09 CGCAAGCCCG GAATCGAACCGGGGGCCCAACG ATGGCAACGT chrVII:930653-931237 + 70 1.10e-09 CGCAAGCCCG GAATCGAACCGGGGGCCCAACG ATGGCAACG chrIV:488471-489158 + 45 1.10e-09 ATCCAACCGA GGTTCGAACTCGGGATCTTCGC CGTGTAAAGG chrIV:83304-83832 - 67 1.10e-09 CGCAAGCCCG GAATCGAACCGGGGGCCCAACG ATGGCAACGT chrXV:287975-288483 - 68 1.58e-09 TCCCGGGGGC GAGTCGAACGCCCGATCTCAAG ATTTCGTAGT chrXIII:837695-838311 - 30 1.58e-09 TCCCGGGGGC GAGTCGAACGCCCGATCTCAAG ATTTCGTAGT chrX:542747-543276 + 7 1.58e-09 GGGGGC GAGTCGAACGCCCGATCTCAAG ATTTCGTAGT chrX:353994-354682 - 11 1.58e-09 TCCCGGGGGC GAGTCGAACGCCCGATCTCAAG ATTTCGTAGT chrVI:210422-210884 + 28 1.58e-09 TCCCGGGGGC GAGTCGAACGCCCGATCTCAAG ATTTCGTAGT chrVI:167227-167724 - 67 1.58e-09 TCCCGGGGGC GAGTCGAACGCCCGATCTCAAG ATTTCGTAGT chrIV:946141-946642 - 26 1.58e-09 TCCCGGGGGC GAGTCGAACGCCCGATCTCAAG ATTTCGTAGT chrX:355123-355740 - 31 1.77e-09 CTCACGATGG GGGTCGAACCCATAATCTTCTG ATTAGAAGTC chrVII:828465-829014 + 46 1.77e-09 CTCACGATGG GGGTCGAACCCATAATCTTCTG ATTAGAAGTC chrVII:736165-736675 - 8 1.77e-09 CTCACGATGG GGGTCGAACCCATAATCTTCTG ATTAGAA chrIV:568675-569247 - 9 1.77e-09 CTCACGATGG GGGTCGAACCCATAATCTTCTG ATTAGAAG chrII:405565-406251 - 58 1.77e-09 CTCACGATGG GGGTCGAACCCATAATCTTCTG ATTAGAAGTC chrXI:46416-47034 + 72 1.99e-09 CCCTCTGTGG GAATTGAACCCACGATCCCCGC ATTACGA chrV:250108-250559 - 41 2.23e-09 GTCCTACCCG GATTCGAACCGGGGTTGTCCGG ATCAAAACCG chrIV:802496-803041 + 25 2.23e-09 GTCCTACCCG GATTCGAACCGGGGTTGTCCGG ATCAAAACCG chrIV:645016-645399 + 8 2.23e-09 CTACCCG GATTCGAACCGGGGTTGTCCGG ATCAAAACCG chrII:350575-351166 - 45 2.23e-09 GTCTTACCCG GATTCGAACCGGGGTTGTCCGG ATCAAAACCG chrXVI:768917-769477 + 72 3.10e-09 CCTCATAGGG GGCTCGAACCCCTGACATTTCG GTATCCT chrXII:875222-875706 - 24 3.10e-09 CCTCATAGGG GGCTCGAACCCCTGACATTTCG GTATCCTTGC chrXI:578757-579349 - 24 3.10e-09 CCTCATAGGG GGCTCGAACCCCTGACATTTCG GTATCCTTGC chrXI:202816-203328 - 16 3.10e-09 CCCTGTAGGG GGCTCGAACCCCTAACCTTATG ATTAAGAGTC chrVI:226439-226938 + 62 3.10e-09 CCCTGTAGGG GGCTCGAACCCCTAACCTTATG ATTAAGAGTC chrV:135171-135731 + 36 3.10e-09 CCCTGTAGGG GGCTCGAACCCCTAACCTTATG ATTAAGAGTC chrIX:299933-300630 + 9 3.10e-09 CTGTAGGG GGCTCGAACCCCTAACCTTATG ATTAAGAGTC chrIV:1352261-1352755 + 20 3.10e-09 CCCTGTAGGG GGCTCGAACCCCTAACCTTATG ATTAAGAGTC chrXIV:560457-561028 + 13 8.62e-09 CTTCCAATCG GATTTGAACCGATGATCTCCAC ATTACTAGTG chrX:58699-59493 + 66 8.62e-09 CTTCCAATCG GATTTGAACCGATGATCTCCAC ATTACTAGTG chrIX:174806-175338 - 48 8.62e-09 CTTCCAATCG GATTTGAACCGATGATCTCCAC ATTACTAGTG chrIV:433921-434593 + 69 8.62e-09 CTTCCAATCG GATTTGAACCGATGATCTCCAC ATTACTAGTG chrII:266147-266711 - 38 8.62e-09 CTTCCAATCG GATTTGAACCGATGATCTCCAC ATTACTAGTG chrXV:487198-487712 - 74 1.14e-08 AGTGA GGGTTGAACTCACGATCTTGCG ATTAACAGTC chrXIV:632371-632897 - 55 1.14e-08 ACCCCAGTGA GGGTTGAACTCACGATCTTGCG ATTAACAGTC chrXII:975675-976291 + 62 1.14e-08 ACCCCAGTGA GGGTTGAACTCACGATCTTGCG ATTAACAGTC chrXI:74421-74898 - 55 1.14e-08 ACCCCAGTGA GGGTTGAACTCACGATCTTGCG ATTAACAGTC chrVII:730929-731459 - 33 1.14e-08 ACCCCAGTGA GGGTTGAACTCACGATCTTGCG ATTAACAGTC chrIII:127509-128080 - 12 1.14e-08 ACCCCAGTGA GGGTTGAACTCACGATCTTGCG ATTAACAGTC chrXIII:572601-573260 + 15 2.75e-08 CTCCAGGGGA GGTTCGAACTCTCGACCTTCAG ATTATGAGAC chrXVI:435614-436199 + 49 6.94e-08 CTCGCACTCA GGATCGAACTAAGGACCAACAG ATTTGCAATC chrVIII:466758-467335 - 32 6.94e-08 CCACCTGCCA GAATTGAACTAGCGACCTTTGC ATTACAAGTG chrVII:706915-707351 + 37 6.94e-08 CTCGCACTCA GGATCGAACTAAGGACCAACAG ATTTGCAATC chrII:642847-643253 + 19 6.94e-08 CTCGCACTCA GGATCGAACTAAGGACCAACAG ATTTGCAATC chrX:415692-416277 + 9 7.46e-08 ACGGACAG GAATTGAACCTGCAACCCTTCG ATTGCAATCT chrVII:287050-287684 + 45 7.46e-08 AAACGGACAG GAATTGAACCTGCAACCCTTCG ATTGCAATCT chrXI:490731-491328 - 28 8.58e-08 TCCCCGCCAG GACTTGAACCTGGAATCTTCTG GTTCGTAGCC chrIV:619643-620305 + 57 8.58e-08 TCCCCGCCAG GACTTGAACCTGGAATCTTCTG GTTCGTAGCC chrXI:313184-313688 + 27 1.05e-07 CCATCTCCTA GAATCGAACCAGGGTTTCATCG GCCACAACGA chrVII:319573-320146 - 10 1.05e-07 CCATCTCCTA GAATCGAACCAGGGTTTCATCG GCCACAACG chrV:434362-434781 + 32 1.05e-07 CCATCTCCTA GAATCGAACCAGGGTTTCATCG GCCACAACGA chrX:517640-518077 + 17 4.08e-07 GCGCCGCTCG GTTTCGATCCGAGGACATCAGG GTTATGAGCC chrV:99926-100441 - 38 4.08e-07 GCGCCGCTCG GTTTCGATCCGAGGACATCAGG GTTATGAGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTCGAACCSVKGAYCTYHNG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631493-632176 2.9e-13 73_[+1]_5 chrXVI:880049-880570 9.2e-11 48_[+1]_30 chrXIV:602108-602596 9.2e-11 49_[-1]_29 chrXIV:569621-570134 9.2e-11 51_[+1]_27 chrV:550970-551587 9.2e-11 68_[+1]_10 chrV:442953-443536 9.2e-11 19_[+1]_59 chrIV:667755-668264 9.2e-11 59_[+1]_19 chrII:197198-197871 9.2e-11 49_[-1]_29 chrXVI:622232-622851 2.3e-10 60_[+1]_18 chrXVI:559964-560530 2.3e-10 12_[+1]_66 chrXIII:352057-352625 2.3e-10 45_[-1]_33 chrIV:1095082-1095720 2.3e-10 30_[+1]_48 chrXV:853991-854439 4e-10 33_[+1]_45 chrXII:214679-215166 4e-10 22_[+1]_56 chrVIII:475537-475921 4e-10 38_[+1]_40 chrV:311711-312320 4e-10 69_[+1]_9 chrIV:1075263-1075756 4e-10 24_[+1]_54 chrVII:779382-779964 4.5e-10 30_[-1]_48 chrXIII:768166-768675 5.2e-10 10_[+1]_68 chrXIII:420313-420933 5.2e-10 26_[+1]_52 chrXIII:372215-372749 5.2e-10 24_[+1]_54 chrXIII:320932-321384 5.2e-10 50_[+1]_28 chrXII:656655-657196 5.2e-10 70_[+1]_8 chrXI:517737-518357 5.2e-10 29_[-1]_49 chrXI:379469-380018 5.2e-10 26_[-1]_52 chrXI:307935-308443 5.2e-10 16_[+1]_62 chrX:197093-197625 5.2e-10 15_[+1]_63 chrVIII:85011-85595 5.2e-10 56_[+1]_22 chrVII:412097-412585 5.2e-10 14_[+1]_64 chrV:469247-469780 5.2e-10 33_[-1]_45 chrXVI:209904-210560 9.8e-10 21_[+1]_57 chrXV:980467-981057 9.8e-10 41_[-1]_37 chrVIII:388623-389213 9.8e-10 36_[+1]_42 chrVII:541581-542183 9.8e-10 55_[-1]_23 chrVII:401334-401803 9.8e-10 20_[+1]_58 chrV:486924-487850 9.8e-10 5_[+1]_73 chrIX:370212-370695 9.8e-10 51_[-1]_27 chrIII:82205-82809 9.8e-10 16_[+1]_62 chrII:644978-645460 9.8e-10 35_[-1]_43 chrXVI:860135-860691 1.1e-09 52_[-1]_26 chrXIII:183652-184211 1.1e-09 28_[+1]_50 chrVII:930653-931237 1.1e-09 69_[+1]_9 chrIV:488471-489158 1.1e-09 44_[+1]_34 chrIV:83304-83832 1.1e-09 66_[-1]_12 chrXV:287975-288483 1.6e-09 67_[-1]_11 chrXIII:837695-838311 1.6e-09 29_[-1]_49 chrX:542747-543276 1.6e-09 6_[+1]_72 chrX:353994-354682 1.6e-09 10_[-1]_68 chrVI:210422-210884 1.6e-09 27_[+1]_51 chrVI:167227-167724 1.6e-09 66_[-1]_12 chrIV:946141-946642 1.6e-09 25_[-1]_53 chrX:355123-355740 1.8e-09 30_[-1]_48 chrVII:828465-829014 1.8e-09 45_[+1]_33 chrVII:736165-736675 1.8e-09 7_[-1]_71 chrIV:568675-569247 1.8e-09 8_[-1]_70 chrII:405565-406251 1.8e-09 57_[-1]_21 chrXI:46416-47034 2e-09 71_[+1]_7 chrV:250108-250559 2.2e-09 40_[-1]_38 chrIV:802496-803041 2.2e-09 24_[+1]_54 chrIV:645016-645399 2.2e-09 7_[+1]_71 chrII:350575-351166 2.2e-09 44_[-1]_34 chrXVI:768917-769477 3.1e-09 71_[+1]_7 chrXII:875222-875706 3.1e-09 23_[-1]_55 chrXI:578757-579349 3.1e-09 23_[-1]_55 chrXI:202816-203328 3.1e-09 15_[-1]_63 chrVI:226439-226938 3.1e-09 61_[+1]_17 chrV:135171-135731 3.1e-09 35_[+1]_43 chrIX:299933-300630 3.1e-09 8_[+1]_70 chrIV:1352261-1352755 3.1e-09 19_[+1]_59 chrXIV:560457-561028 8.6e-09 12_[+1]_66 chrX:58699-59493 8.6e-09 65_[+1]_13 chrIX:174806-175338 8.6e-09 47_[-1]_31 chrIV:433921-434593 8.6e-09 68_[+1]_10 chrII:266147-266711 8.6e-09 37_[-1]_41 chrXV:487198-487712 1.1e-08 73_[-1]_5 chrXIV:632371-632897 1.1e-08 54_[-1]_24 chrXII:975675-976291 1.1e-08 61_[+1]_17 chrXI:74421-74898 1.1e-08 54_[-1]_24 chrVII:730929-731459 1.1e-08 32_[-1]_46 chrIII:127509-128080 1.1e-08 11_[-1]_67 chrXIII:572601-573260 2.7e-08 14_[+1]_64 chrXVI:435614-436199 6.9e-08 48_[+1]_30 chrVIII:466758-467335 6.9e-08 31_[-1]_47 chrVII:706915-707351 6.9e-08 36_[+1]_42 chrII:642847-643253 6.9e-08 18_[+1]_60 chrX:415692-416277 7.5e-08 8_[+1]_70 chrVII:287050-287684 7.5e-08 44_[+1]_34 chrXI:490731-491328 8.6e-08 27_[-1]_51 chrIV:619643-620305 8.6e-08 56_[+1]_22 chrXI:313184-313688 1.1e-07 26_[+1]_52 chrVII:319573-320146 1.1e-07 9_[-1]_69 chrV:434362-434781 1.1e-07 31_[+1]_47 chrX:517640-518077 4.1e-07 16_[+1]_62 chrV:99926-100441 4.1e-07 37_[-1]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTCGAACCSVKGAYCTYHNG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRRTCGAACCSVKGAYCTYHNG width=22 seqs=94 chrXIV:631493-632176 ( 74) GACTCGAACCCGGGACCTCCCG 1 chrXVI:880049-880570 ( 49) GGATCGAACCGCTGATCCCCGC 1 chrXIV:602108-602596 ( 50) GGATCGAACCGCTGATCCCCGC 1 chrXIV:569621-570134 ( 52) GGATCGAACCGCTGATCCCCGC 1 chrV:550970-551587 ( 69) GGATCGAACCGCTGATCCCCGC 1 chrV:442953-443536 ( 20) GGATCGAACCGCTGATCCCCGC 1 chrIV:667755-668264 ( 60) GGATCGAACCGCTGATCCCCGC 1 chrII:197198-197871 ( 50) GGATCGAACCGCTGATCCCCGC 1 chrXVI:622232-622851 ( 61) GGATCGAACACAGGACCTCCAG 1 chrXVI:559964-560530 ( 13) GGATCGAACACAGGACCTCCAG 1 chrXIII:352057-352625 ( 46) GGATCGAACACAGGACCTCCAG 1 chrIV:1095082-1095720 ( 31) GGATCGAACACAGGACCTCCAG 1 chrXV:853991-854439 ( 34) GAATCGAACCGATGACCTCTTC 1 chrXII:214679-215166 ( 23) GAATCGAACCGATGACCTCTTC 1 chrVIII:475537-475921 ( 39) GGATCGAACTCGGGACCTTTGC 1 chrV:311711-312320 ( 70) GAATCGAACCGATGACCTCTTC 1 chrIV:1075263-1075756 ( 25) GGATCGAACTCGGGACCTTTGC 1 chrVII:779382-779964 ( 31) GAATCGAACCCGTGTCCCCACC 1 chrXIII:768166-768675 ( 11) GAATCGAACCGGAGACCTCTCC 1 chrXIII:420313-420933 ( 27) GGATCGAACTGGGGACGTTCTG 1 chrXIII:372215-372749 ( 25) GGATCGAACTGGGGACGTTCTG 1 chrXIII:320932-321384 ( 51) GAATCGAACCGGAGACCTCTCC 1 chrXII:656655-657196 ( 71) GAATCGAACCGGAGACCTCTCC 1 chrXI:517737-518357 ( 30) GAATCGAACCGGAGACCTCTCC 1 chrXI:379469-380018 ( 27) GGATCGAACTGGGGACGTTCTG 1 chrXI:307935-308443 ( 17) GGATCGAACTGGGGACGTTCTG 1 chrX:197093-197625 ( 16) GAATCGAACCGGAGACCTCTCC 1 chrVIII:85011-85595 ( 57) GGATCGAACTGGGGACGTTCTG 1 chrVII:412097-412585 ( 15) GGATCGAACTGGGGACGTTCTG 1 chrV:469247-469780 ( 34) GGATCGAACTGGGGACGTTCTG 1 chrXVI:209904-210560 ( 22) GAGTCGAACCCCGGTCTCCACG 1 chrXV:980467-981057 ( 42) GAATTGAACCCAGGGCCTCTCG 1 chrVIII:388623-389213 ( 37) GAATTGAACCCAGGGCCTCTCG 1 chrVII:541581-542183 ( 56) GAGTCGAACCCCGGTCTCCACG 1 chrVII:401334-401803 ( 21) GAGTCGAACCCCGGTCTCCACG 1 chrV:486924-487850 ( 6) GAGTCGAACCCCGGTCTCCACG 1 chrIX:370212-370695 ( 52) GAGTCGAACCCCGGTCTCCACG 1 chrIII:82205-82809 ( 17) GAGTCGAACCCCGGTCTCCACG 1 chrII:644978-645460 ( 36) GAGTCGAACCCCGGTCTCCACG 1 chrXVI:860135-860691 ( 53) GAATCGAACCGGGGGCCCAACG 1 chrXIII:183652-184211 ( 29) GAATCGAACCGGGGGCCCAACG 1 chrVII:930653-931237 ( 70) GAATCGAACCGGGGGCCCAACG 1 chrIV:488471-489158 ( 45) GGTTCGAACTCGGGATCTTCGC 1 chrIV:83304-83832 ( 67) GAATCGAACCGGGGGCCCAACG 1 chrXV:287975-288483 ( 68) GAGTCGAACGCCCGATCTCAAG 1 chrXIII:837695-838311 ( 30) GAGTCGAACGCCCGATCTCAAG 1 chrX:542747-543276 ( 7) GAGTCGAACGCCCGATCTCAAG 1 chrX:353994-354682 ( 11) GAGTCGAACGCCCGATCTCAAG 1 chrVI:210422-210884 ( 28) GAGTCGAACGCCCGATCTCAAG 1 chrVI:167227-167724 ( 67) GAGTCGAACGCCCGATCTCAAG 1 chrIV:946141-946642 ( 26) GAGTCGAACGCCCGATCTCAAG 1 chrX:355123-355740 ( 31) GGGTCGAACCCATAATCTTCTG 1 chrVII:828465-829014 ( 46) GGGTCGAACCCATAATCTTCTG 1 chrVII:736165-736675 ( 8) GGGTCGAACCCATAATCTTCTG 1 chrIV:568675-569247 ( 9) GGGTCGAACCCATAATCTTCTG 1 chrII:405565-406251 ( 58) GGGTCGAACCCATAATCTTCTG 1 chrXI:46416-47034 ( 72) GAATTGAACCCACGATCCCCGC 1 chrV:250108-250559 ( 41) GATTCGAACCGGGGTTGTCCGG 1 chrIV:802496-803041 ( 25) GATTCGAACCGGGGTTGTCCGG 1 chrIV:645016-645399 ( 8) GATTCGAACCGGGGTTGTCCGG 1 chrII:350575-351166 ( 45) GATTCGAACCGGGGTTGTCCGG 1 chrXVI:768917-769477 ( 72) GGCTCGAACCCCTGACATTTCG 1 chrXII:875222-875706 ( 24) GGCTCGAACCCCTGACATTTCG 1 chrXI:578757-579349 ( 24) GGCTCGAACCCCTGACATTTCG 1 chrXI:202816-203328 ( 16) GGCTCGAACCCCTAACCTTATG 1 chrVI:226439-226938 ( 62) GGCTCGAACCCCTAACCTTATG 1 chrV:135171-135731 ( 36) GGCTCGAACCCCTAACCTTATG 1 chrIX:299933-300630 ( 9) GGCTCGAACCCCTAACCTTATG 1 chrIV:1352261-1352755 ( 20) GGCTCGAACCCCTAACCTTATG 1 chrXIV:560457-561028 ( 13) GATTTGAACCGATGATCTCCAC 1 chrX:58699-59493 ( 66) GATTTGAACCGATGATCTCCAC 1 chrIX:174806-175338 ( 48) GATTTGAACCGATGATCTCCAC 1 chrIV:433921-434593 ( 69) GATTTGAACCGATGATCTCCAC 1 chrII:266147-266711 ( 38) GATTTGAACCGATGATCTCCAC 1 chrXV:487198-487712 ( 74) GGGTTGAACTCACGATCTTGCG 1 chrXIV:632371-632897 ( 55) GGGTTGAACTCACGATCTTGCG 1 chrXII:975675-976291 ( 62) GGGTTGAACTCACGATCTTGCG 1 chrXI:74421-74898 ( 55) GGGTTGAACTCACGATCTTGCG 1 chrVII:730929-731459 ( 33) GGGTTGAACTCACGATCTTGCG 1 chrIII:127509-128080 ( 12) GGGTTGAACTCACGATCTTGCG 1 chrXIII:572601-573260 ( 15) GGTTCGAACTCTCGACCTTCAG 1 chrXVI:435614-436199 ( 49) GGATCGAACTAAGGACCAACAG 1 chrVIII:466758-467335 ( 32) GAATTGAACTAGCGACCTTTGC 1 chrVII:706915-707351 ( 37) GGATCGAACTAAGGACCAACAG 1 chrII:642847-643253 ( 19) GGATCGAACTAAGGACCAACAG 1 chrX:415692-416277 ( 9) GAATTGAACCTGCAACCCTTCG 1 chrVII:287050-287684 ( 45) GAATTGAACCTGCAACCCTTCG 1 chrXI:490731-491328 ( 28) GACTTGAACCTGGAATCTTCTG 1 chrIV:619643-620305 ( 57) GACTTGAACCTGGAATCTTCTG 1 chrXI:313184-313688 ( 27) GAATCGAACCAGGGTTTCATCG 1 chrVII:319573-320146 ( 10) GAATCGAACCAGGGTTTCATCG 1 chrV:434362-434781 ( 32) GAATCGAACCAGGGTTTCATCG 1 chrX:517640-518077 ( 17) GTTTCGATCCGAGGACATCAGG 1 chrV:99926-100441 ( 38) GTTTCGATCCGAGGACATCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTCGAACCSVKGAYCTYHNG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 44635 bayes= 7.63387 E= 1.6e-346 -1320 -1320 244 -1320 69 -1320 135 -389 60 -65 53 -119 -1320 -1320 -1320 166 -1320 212 -1320 -65 -1320 -1320 244 -1320 166 -1320 -1320 -1320 163 -1320 -1320 -389 -1320 244 -1320 -1320 -289 184 -130 -50 -209 141 110 -289 6 75 93 -489 -257 6 128 -4 -109 -1320 221 -1320 130 -1320 -153 -99 -1320 162 -1320 46 -257 198 -65 -157 -331 53 -1320 115 -157 150 -1320 24 -19 125 -153 -50 -57 98 6 -43 -1320 59 198 -1320 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTCGAACCSVKGAYCTYHNG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 94 E= 1.6e-346 0.000000 0.000000 1.000000 0.000000 0.510638 0.000000 0.468085 0.021277 0.478723 0.117021 0.265957 0.138298 0.000000 0.000000 0.000000 1.000000 0.000000 0.797872 0.000000 0.202128 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.978723 0.000000 0.000000 0.021277 0.000000 1.000000 0.000000 0.000000 0.042553 0.659574 0.074468 0.223404 0.074468 0.489362 0.393617 0.042553 0.329787 0.308511 0.351064 0.010638 0.053191 0.191489 0.446809 0.308511 0.148936 0.000000 0.851064 0.000000 0.776596 0.000000 0.063830 0.159574 0.000000 0.563830 0.000000 0.436170 0.053191 0.723404 0.117021 0.106383 0.031915 0.265957 0.000000 0.702128 0.106383 0.521277 0.000000 0.372340 0.276596 0.436170 0.063830 0.223404 0.212766 0.361702 0.191489 0.234043 0.000000 0.276596 0.723404 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTCGAACCSVKGAYCTYHNG MEME-1 regular expression -------------------------------------------------------------------------------- G[AG][AG]T[CT]GAAC[CT][CG][GAC][GT]GA[CT]C[TC][CT][CAT][CTA][GC] -------------------------------------------------------------------------------- Time 311.49 secs. ******************************************************************************** ******************************************************************************** MOTIF TAMCCACTRVRCYAHVNVRSC MEME-2 width = 21 sites = 120 llr = 1640 E-value = 7.1e-259 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAMCCACTRVRCYAHVNVRSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 375:29::524::a4333311 pos.-specific C 1:4a6:8:14:a6:3322248 probability G :11:21::346::::33455: matrix T 62::::2a11::4:3121:1: bits 2.4 * * 2.2 * * 2.0 * * 1.7 * * * * Relative 1.5 * ** * * * Entropy 1.2 * *** **** * (19.7 bits) 1.0 * *** **** * 0.7 ****** **** ** 0.5 ******** ***** *** 0.2 **************** **** 0.0 --------------------- Multilevel TAACCACTAGGCCAAAAGGGC consensus ATC A T GCA T CGGAAC sequence A TCT C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAMCCACTRVRCYAHVNVRSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIII:768166-768675 + 51 6.99e-10 GGGAGCGCGC TACCGACTACGCCACACGCCC ATTTCTTATT chrXI:219606-220151 - 67 6.99e-10 GGGAGCGCGC TACCGACTACGCCACACGCCC TATTTACTGT chrX:197093-197625 + 56 6.99e-10 GGGAGCGCGC TACCGACTACGCCACACGCCC TAATATTATT chrVI:204779-205234 + 20 6.99e-10 GGGAGCGCGC TACCGACTACGCCACACGCCC GAACGTTTGT chrXV:853991-854439 + 74 3.64e-09 GGAAGCGCGC TACCAACTGCGCCATGTGCCC TGATGA chrXII:214679-215166 + 63 3.64e-09 GGAAGCGCGC TACCAACTGCGCCATGTGCCC TAAAACGCGT chrXVI:689225-689886 - 60 5.26e-09 TCTGTCGCCT TAACCACTCGGCCATAGTGCC CAAAATAATC chrXIV:95958-96649 + 39 5.26e-09 GGTGGGATGA TAACCACTACACTAACCGCCC ATGTGTTGGA chrXIII:258925-259500 + 57 5.26e-09 TCTTTCGCCT TAACCACTCGGCCAAGTTGCC ATACTAACTT chrIV:1305194-1306043 - 62 5.26e-09 TCTTTCGCCT TAACCACTCGGCCAAGTTGCC TTAATTTGTA chrIV:980749-981280 + 71 5.26e-09 TCTTTCGCCT TAACCACTCGGCCAAGTTGCC TCAATTTAC chrIV:437517-438047 - 40 5.26e-09 TCTTTCGCCT TAACCACTCGGCCAAGTTGCC TTACTAATGA chrIII:227733-228246 - 3 5.26e-09 TCTCTCGCCT TAACCACTCGGCCATAGTGCC AT chrII:226828-227416 - 3 5.26e-09 TCTTTCGCCT TAACCACTCGGCCAAGTTGCC TC chrXII:605149-605645 + 65 6.29e-09 CACGAAGCTC TAACCACTGAGCTACACGAGC ATTTTCGAAA chrIV:884147-884661 - 7 6.29e-09 CACGAAGCTC TAACCACTGAGCTACACGAGC ATTTTC chrXIV:602108-602596 - 10 8.89e-09 ACGGTGCCTT AACCAACTGGGCCAAGAGACC ATTGTTATC chrXII:1051876-1052414 + 29 8.89e-09 ACGGTGCCTT AACCAACTGGGCCAAGAGACC ATGAAAAGGA chrXII:734548-735067 - 45 8.89e-09 ACGGTGCCTT AACCAACTGGGCCAAGAGACC AAACTTTGTT chrXII:448486-448979 + 19 8.89e-09 CCGAAAGTGA TAACCACTACACTATAGGACC GGAACTTCTT chrV:442953-443536 + 61 8.89e-09 ACGGTGCCTT AACCAACTGGGCCAAGAGACC AAATTTTAAT chrV:250108-250559 - 3 8.89e-09 CCGAAAGTGA TAACCACTACACTATAGGACC AG chrIV:802496-803041 + 64 8.89e-09 CCGAAAGTGA TAACCACTACACTATAGGACC GACAATTCAT chrIV:645016-645399 + 47 8.89e-09 CCGAAAGTGA TAACCACTACACTATAGGACC GTAACAACTG chrIII:168086-168636 + 41 8.89e-09 CCGAAAGTGA TAACCACTACACTATAGGACC AGGACTTCTT chrII:197198-197871 - 10 8.89e-09 ACGGTGCCTT AACCAACTGGGCCAAGAGACC TTGATTACT chrXV:274449-274995 - 1 1.46e-08 GGCATCGCCT TAACCACTCGGCCACTGGGAC chrXII:784068-784592 - 74 1.46e-08 TCGCCT TAACCACTCGGCCACTGGGAC GGTTGAACAA chrXVI:581665-582456 - 52 1.71e-08 TCATACGCGC TACCGATTGCGCCAACAAGGC TCTTTTGTTG chrXIII:480335-481037 + 37 1.71e-08 TCATACGCGC TACCGATTGCGCCAACAAGGC TACTTATTGT chrVII:876026-876739 - 62 1.71e-08 TCATACGCGC TACCGATTGCGCCAACAAGGC TATTCTATTA chrVII:185331-186253 + 24 1.71e-08 TCATACGCGC TACCGATTGCGCCAACAAGGC TATTTCGTTG chrVII:122034-122509 - 48 1.71e-08 TCATACGCGC TACCGATTGCGCCAACAAGGC TAATTCGTTG chrV:135171-135731 + 76 1.71e-08 TCATACGCGC TACCGATTGCGCCAACAAGGC TTTT chrIX:299933-300630 + 49 1.71e-08 TCATACGCGC TACCGATTGCGCCAACAAGGC TATTTCGTTG chrIV:1352261-1352755 + 60 1.71e-08 TCATACGCGC TACCGATTGCGCCAACAAGGC TATTTCGTTG chrIV:1201468-1202055 - 39 1.71e-08 TCATACGCGC TACCGATTGCGCCAACAAGGC TATTTATTTG chrXV:464232-464681 - 44 2.00e-08 AGCGAGAATC ATACCACTAGACCACACGCCC TTGTTAACTT chrXV:300771-301406 - 59 2.00e-08 AGCGAGAATC ATACCACTAGACCACACGCCC GATCTTTTCT chrXIII:195890-196444 + 33 2.00e-08 AGCGAGAATC ATACCACTAGACCACACGCCC TTGTGAACTT chrVI:101172-101650 - 15 2.00e-08 AGCGAGAATC ATACCACTAGACCACACGCCC GAATTATTGT chrI:138930-139428 - 23 2.00e-08 AGCGAGAATC ATACCACTAGACCACACGCCC GTACTAATTG chrXIII:420313-420933 + 68 2.32e-08 CAGATGCCAT AACCGACTAGACCACGAAACC TGTTATTTGT chrXIII:372215-372749 + 66 2.32e-08 CAGATGCCAT AACCGACTAGACCACGAAACC AGGTTTTATT chrXII:687626-688276 + 11 2.32e-08 CAGATGCCAT AACCGACTAGACCACGAAACC TATTATTTAT chrXI:307935-308443 + 58 2.32e-08 CAGATGCCAT AACCGACTAGACCACGAAACC ACTTAATTGT chrX:378122-378570 - 64 2.32e-08 CAGATGCCAT AACCGACTAGACCACGAAACC TATTAATTTA chrVII:823240-823727 - 49 2.32e-08 CAGATGCCAT AACCGACTAGACCACGAAACC ACTCTTATTG chrVII:412097-412585 + 56 2.32e-08 CAGATGCCAT AACCGACTAGACCACGAAACC AGTTTTTTGA chrII:350575-351166 - 7 4.16e-08 CCGAAAGTGA TAACCACTACACTATAAAACC CTTTTA chrXVI:775611-776054 + 34 4.78e-08 ATCTGCTGCG CTACCACTGCGCCATACGAGC TTTTGAATTA chrVII:706915-707351 + 76 4.78e-08 ATCTGCTGCG CTACCACTGCGCCATACGAGC TTGA chrII:642847-643253 + 58 4.78e-08 ATCTGCTGCG CTACCACTGCGCCATACGAGC TTTCTATTAC chrXV:113512-114082 - 55 5.49e-08 TGTGGCGCCT TACCAACTTGGCCATAGAAGC TAAATCTCTG chrXIV:560457-561028 + 53 5.49e-08 TGTGGCGCCT TACCAACTTGGCCATAGAAGC CCGTTATTAC chrXII:731890-732312 - 39 5.49e-08 CTGACGCCTT AAACCACTCGGCCAAACTCCC ATTGTATGTT chrX:617686-618173 - 40 5.49e-08 CTGACGCCTT AAACCACTCGGCCAAACTCCC ATTGTTTGTT chrIX:174806-175338 - 9 5.49e-08 TGTGGCGCCT TACCAACTTGGCCATAGAAGC TCGTACTT chrII:405565-406251 - 20 5.49e-08 GTCAGACGCG TTGCCATTACGCCACGCGAGC TACTATTTGT chrXVI:743865-744678 - 63 8.15e-08 GTGCAACGCT CTACCACTAAGCTAAGGAGGC TTTTACACTG chrVII:1004018-1004417 - 49 8.15e-08 GTGCAACGCT CTACCACTAAGCTAAGGAGGC AAACCCTTGA chrVII:661527-661954 - 59 8.15e-08 GTGCAACGCT CTACCACTAAGCTAAGGAGGC AAATTTTTAC chrXVI:860135-860691 - 16 1.05e-07 ACGTTGGATT TTACCACTAAACCACTTGCGC TTGTTATTTA chrXV:281837-282503 - 44 1.05e-07 ACGTTGGATT TTACCACTAAACCACTTGCGC GCTTTCATGT chrXV:226463-226885 + 37 1.05e-07 ACGTTGGATT TTACCACTAAACCACTTGCGC TGAATTTCTT chrXIII:183652-184211 + 67 1.05e-07 ACGTTGGATT TTACCACTAAACCACTTGCGC GATCTTTATT chrX:531401-532255 - 50 1.05e-07 ACGTTGGATT TTACCACTAAACCACTTGCGC TCACTAATTG chrIV:992549-993073 - 71 1.05e-07 CGTTGGATT TTACCACTAAACCACTTGCGC TCACAATTGT chrIV:83304-83832 - 30 1.05e-07 ACGTTGGATT TTACCACTAAACCACTTGCGC TAAGTGAACT chrIV:1256863-1257302 + 27 1.70e-07 GCATGAATTC TAACCACTGAACCACTTTCGC TAAGAAGATC chrXIII:362789-363337 - 51 2.40e-07 CGATGTGTAC TAACCACTATACTAAGATGGC AAACTTGGAT chrXI:313184-313688 + 66 2.40e-07 CGATGTGTAC TAACCACTATACTAAGATGGC AAACAACTGT chrVIII:62535-62973 - 51 2.40e-07 CGATGTGTAC TAACCACTATACTAAGATGGC ATATGATTTT chrVII:110421-110956 + 38 2.40e-07 CGATGTGTAC TAACCACTATACTAAGATGGC AGGTAATTAT chrV:434362-434781 + 71 2.40e-07 CGATGTGTAC TAACCACTATACTAAGATGGC GACTTTTCA chrXII:489304-489556 - 39 2.68e-07 CGCGTATGGT CACCCACTACACTACTCGGTC AGGCTCTTAC chrXII:468750-468993 - 62 2.68e-07 CGCGTATGGT CACCCACTACACTACTCGGTC AGGCTCTTAC chrX:538329-538792 - 45 2.68e-07 GGGAGACGCG TTACCATTACGCCAACGGAAC CAACTTGGTT chrXVI:810428-810918 - 53 3.32e-07 CGCACGCCTT AACCAACTTGGCCATGGAGTC GCAAATAATG chrXV:487198-487712 - 34 3.32e-07 CGCACGCCTT AACCAACTTGGCCATGGAGTC TAACTTTGTT chrXV:228051-228594 - 59 3.32e-07 CGCACGCCTT AACCAACTTGGCCATGGAGTC TAATATTTTA chrXIV:632371-632897 - 15 3.32e-07 CGCACGCCTT AACCAACTTGGCCATGGAGTC ACTTTAAATT chrXI:74421-74898 - 15 3.32e-07 CGCACGCCTT AACCAACTTGGCCATGGAGTC TAATTGCTAT chrVI:137223-137937 + 9 3.32e-07 CACGCCTT AACCAACTTGGCCATGGAGTC AGTCACTTTT chrVII:115241-115775 - 30 3.69e-07 CCGAACGCTC TACCAACTGAGCTAACAAGGA TGAGTTCTTC chrIV:359316-359898 - 20 3.69e-07 CCGAACGCTC TACCAACTGAGCTAACAAGGA TGAGTTCTTC chrX:424291-424749 + 25 8.09e-07 CTGCCGCCTT AGACCACTCGGCCAACCCTCC ATCTTATTTA chrVII:857218-857687 + 69 8.09e-07 CAGGCGCCTT AGACCGCTCGGCCAAACAACC ACTTATTTGT chrII:347380-347920 - 3 8.09e-07 CTGCCGCCTT AGACCACTCGGCCAACCCTCC GT chrII:9327-9936 - 2 8.09e-07 CTGCCGCCTT AGACCACTCGGCCAACCCTCC A chrXVI:559964-560530 + 72 1.26e-06 TCTGGCGCTC TCCCAACTGAGCTAAATCCGC TCAATTTC chrVIII:358283-358854 + 31 1.26e-06 TCTGGCGCTC TCCCAACTGAGCTAAATCCGC TTACTATTTG chrVIII:237667-238157 + 57 1.26e-06 TCTGGCGCTC TCCCAACTGAGCTAAATCCGC TTACTATTTG chrII:36153-36594 - 75 1.26e-06 CGCTC TCCCAACTGAGCTAAATCCGC TTACAACTAA chrVIII:475537-475921 + 79 2.80e-06 GGCAACGTGA TAGCCGCTACACTATTGGAAC A chrIV:1075263-1075756 + 65 2.80e-06 GGCAACGTGA TAGCCGCTACACTATTGGAAC AATATTACGG chrVIII:505215-506236 + 10 3.99e-06 GAAGATACG ATGCCATTGCGCTAACGAAAC CACATGGATC chrXV:723785-724231 - 37 4.27e-06 TCTGAAGTAG AACCGACTCTACCAACAGACA AAAAGATGTA chrXIII:463233-463914 - 31 4.27e-06 GCGCCCATTC TGACCATTAAACTATCACGGA CAAATTTCTG chrX:374183-374787 + 40 4.27e-06 GCGCCCATTC TGACCATTAAACTATCACGGA AGAAACAAAG chrX:355123-355740 - 75 4.27e-06 CATTC TGACCATTAAACTATCACGGA AGAAACAAAG chrIX:336127-336698 + 38 4.27e-06 GCGCCCATTC TGACCATTAAACTATCACGGA TTTGTTTCTA chrIX:324066-324627 + 58 4.27e-06 GCGCCCATTC TGACCATTAAACTATCACGGA ATATTAGATG chrIV:1016962-1017641 + 7 4.27e-06 ATGTGA TAGCCGTTACACTACATCGGA TTGTACCTTG chrIV:568675-569247 - 53 4.27e-06 GCGCCCATTC TGACCATTAAACTATCACGGA AGAAACAAAG chrXV:287975-288483 - 13 4.57e-06 TTGCGCCTTA AACCAACTTGGCTACCGAGAG AAGCTATTTT chrXIII:168564-169084 - 21 4.57e-06 TTGCGCCTTA AACCAACTTGGCTACCGAGAG TGACTATTTT chrX:542747-543276 + 63 4.57e-06 TTGCGCCTTA AACCAACTTGGCTACCGAGAG TATTTAATTG chrVI:167227-167724 - 12 4.57e-06 TTGCGCCTTA AACCAACTTGGCTACCGAGAG TCGTTTTTGT chrXIII:572601-573260 + 55 5.21e-06 ACTGACGCTC TTCCTACTGAGCTACTGAAGC TGTCTGTTAT chrXVI:209904-210560 + 61 6.30e-06 CGTGATGTGA TAGCCGTTACACTATATCGGA CAATAATTGG chrXIII:290401-291155 - 73 6.30e-06 GATGTGA TAGCCGTTACACTATATCGGA TTATATTTCA chrVII:541581-542183 - 18 6.30e-06 CGTGATGTGA TAGCCGTTACACTATATCGGA TGGTAATCTG chrVII:401334-401803 + 60 6.30e-06 CGTGATGTGA TAGCCGTTACACTATATCGGA AACAAATTAA chrV:486924-487850 + 45 6.30e-06 CGTGATGTGA TAGCCGTTACACTATATCGGA TTAAATTCAT chrIX:370212-370695 - 14 6.30e-06 CGTGATGTGA TAGCCGTTACACTATATCGGA TTATAATCTA chrIII:82205-82809 + 56 6.30e-06 CGTGATGTGA TAGCCGTTACACTATATCGGA TAACAAATTA chrXI:302656-303255 - 13 9.49e-06 GTCGAAAGCT CTACCATTGAGCCACCGCTTC ATCTTGGAAT chrX:745210-745734 - 18 1.51e-05 AATTACCCAT ATCCAACTCCACTACCATTAC CCTACTATTA chrX:517640-518077 + 56 1.51e-05 GCCCTGCGCG CTTCCACTGCGCCACGGCGCT TAACTTTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAMCCACTRVRCYAHVNVRSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:768166-768675 7e-10 50_[+2]_29 chrXI:219606-220151 7e-10 66_[-2]_13 chrX:197093-197625 7e-10 55_[+2]_24 chrVI:204779-205234 7e-10 19_[+2]_60 chrXV:853991-854439 3.6e-09 73_[+2]_6 chrXII:214679-215166 3.6e-09 62_[+2]_17 chrXVI:689225-689886 5.3e-09 59_[-2]_20 chrXIV:95958-96649 5.3e-09 38_[+2]_41 chrXIII:258925-259500 5.3e-09 56_[+2]_23 chrIV:1305194-1306043 5.3e-09 61_[-2]_18 chrIV:980749-981280 5.3e-09 70_[+2]_9 chrIV:437517-438047 5.3e-09 39_[-2]_40 chrIII:227733-228246 5.3e-09 2_[-2]_77 chrII:226828-227416 5.3e-09 2_[-2]_77 chrXII:605149-605645 6.3e-09 64_[+2]_15 chrIV:884147-884661 6.3e-09 6_[-2]_73 chrXIV:602108-602596 8.9e-09 9_[-2]_70 chrXII:1051876-1052414 8.9e-09 28_[+2]_51 chrXII:734548-735067 8.9e-09 44_[-2]_35 chrXII:448486-448979 8.9e-09 18_[+2]_61 chrV:442953-443536 8.9e-09 60_[+2]_19 chrV:250108-250559 8.9e-09 2_[-2]_77 chrIV:802496-803041 8.9e-09 63_[+2]_16 chrIV:645016-645399 8.9e-09 46_[+2]_33 chrIII:168086-168636 8.9e-09 40_[+2]_39 chrII:197198-197871 8.9e-09 9_[-2]_70 chrXV:274449-274995 1.5e-08 [-2]_79 chrXII:784068-784592 1.5e-08 73_[-2]_6 chrXVI:581665-582456 1.7e-08 51_[-2]_28 chrXIII:480335-481037 1.7e-08 36_[+2]_43 chrVII:876026-876739 1.7e-08 61_[-2]_18 chrVII:185331-186253 1.7e-08 23_[+2]_56 chrVII:122034-122509 1.7e-08 47_[-2]_32 chrV:135171-135731 1.7e-08 75_[+2]_4 chrIX:299933-300630 1.7e-08 48_[+2]_31 chrIV:1352261-1352755 1.7e-08 59_[+2]_20 chrIV:1201468-1202055 1.7e-08 38_[-2]_41 chrXV:464232-464681 2e-08 43_[-2]_36 chrXV:300771-301406 2e-08 58_[-2]_21 chrXIII:195890-196444 2e-08 32_[+2]_47 chrVI:101172-101650 2e-08 14_[-2]_65 chrI:138930-139428 2e-08 22_[-2]_57 chrXIII:420313-420933 2.3e-08 67_[+2]_12 chrXIII:372215-372749 2.3e-08 65_[+2]_14 chrXII:687626-688276 2.3e-08 10_[+2]_69 chrXI:307935-308443 2.3e-08 57_[+2]_22 chrX:378122-378570 2.3e-08 63_[-2]_16 chrVII:823240-823727 2.3e-08 48_[-2]_31 chrVII:412097-412585 2.3e-08 55_[+2]_24 chrII:350575-351166 4.2e-08 6_[-2]_73 chrXVI:775611-776054 4.8e-08 33_[+2]_46 chrVII:706915-707351 4.8e-08 75_[+2]_4 chrII:642847-643253 4.8e-08 57_[+2]_22 chrXV:113512-114082 5.5e-08 54_[-2]_25 chrXIV:560457-561028 5.5e-08 52_[+2]_27 chrXII:731890-732312 5.5e-08 38_[-2]_41 chrX:617686-618173 5.5e-08 39_[-2]_40 chrIX:174806-175338 5.5e-08 8_[-2]_71 chrII:405565-406251 5.5e-08 19_[-2]_60 chrXVI:743865-744678 8.2e-08 62_[-2]_17 chrVII:1004018-1004417 8.2e-08 48_[-2]_31 chrVII:661527-661954 8.2e-08 58_[-2]_21 chrXVI:860135-860691 1.1e-07 15_[-2]_64 chrXV:281837-282503 1.1e-07 43_[-2]_36 chrXV:226463-226885 1.1e-07 36_[+2]_43 chrXIII:183652-184211 1.1e-07 66_[+2]_13 chrX:531401-532255 1.1e-07 49_[-2]_30 chrIV:992549-993073 1.1e-07 70_[-2]_9 chrIV:83304-83832 1.1e-07 29_[-2]_50 chrIV:1256863-1257302 1.7e-07 26_[+2]_53 chrXIII:362789-363337 2.4e-07 50_[-2]_29 chrXI:313184-313688 2.4e-07 65_[+2]_14 chrVIII:62535-62973 2.4e-07 50_[-2]_29 chrVII:110421-110956 2.4e-07 37_[+2]_42 chrV:434362-434781 2.4e-07 70_[+2]_9 chrXII:489304-489556 2.7e-07 38_[-2]_41 chrXII:468750-468993 2.7e-07 61_[-2]_18 chrX:538329-538792 2.7e-07 44_[-2]_35 chrXVI:810428-810918 3.3e-07 52_[-2]_27 chrXV:487198-487712 3.3e-07 33_[-2]_46 chrXV:228051-228594 3.3e-07 58_[-2]_21 chrXIV:632371-632897 3.3e-07 14_[-2]_65 chrXI:74421-74898 3.3e-07 14_[-2]_65 chrVI:137223-137937 3.3e-07 8_[+2]_71 chrVII:115241-115775 3.7e-07 29_[-2]_50 chrIV:359316-359898 3.7e-07 19_[-2]_60 chrX:424291-424749 8.1e-07 24_[+2]_55 chrVII:857218-857687 8.1e-07 68_[+2]_11 chrII:347380-347920 8.1e-07 2_[-2]_77 chrII:9327-9936 8.1e-07 1_[-2]_78 chrXVI:559964-560530 1.3e-06 71_[+2]_8 chrVIII:358283-358854 1.3e-06 30_[+2]_49 chrVIII:237667-238157 1.3e-06 56_[+2]_23 chrII:36153-36594 1.3e-06 74_[-2]_5 chrVIII:475537-475921 2.8e-06 78_[+2]_1 chrIV:1075263-1075756 2.8e-06 64_[+2]_15 chrVIII:505215-506236 4e-06 9_[+2]_70 chrXV:723785-724231 4.3e-06 36_[-2]_43 chrXIII:463233-463914 4.3e-06 30_[-2]_49 chrX:374183-374787 4.3e-06 39_[+2]_40 chrX:355123-355740 4.3e-06 74_[-2]_5 chrIX:336127-336698 4.3e-06 37_[+2]_42 chrIX:324066-324627 4.3e-06 57_[+2]_22 chrIV:1016962-1017641 4.3e-06 6_[+2]_73 chrIV:568675-569247 4.3e-06 52_[-2]_27 chrXV:287975-288483 4.6e-06 12_[-2]_67 chrXIII:168564-169084 4.6e-06 20_[-2]_59 chrX:542747-543276 4.6e-06 62_[+2]_17 chrVI:167227-167724 4.6e-06 11_[-2]_68 chrXIII:572601-573260 5.2e-06 54_[+2]_25 chrXVI:209904-210560 6.3e-06 60_[+2]_19 chrXIII:290401-291155 6.3e-06 72_[-2]_7 chrVII:541581-542183 6.3e-06 17_[-2]_62 chrVII:401334-401803 6.3e-06 59_[+2]_20 chrV:486924-487850 6.3e-06 44_[+2]_35 chrIX:370212-370695 6.3e-06 13_[-2]_66 chrIII:82205-82809 6.3e-06 55_[+2]_24 chrXI:302656-303255 9.5e-06 12_[-2]_67 chrX:745210-745734 1.5e-05 17_[-2]_62 chrX:517640-518077 1.5e-05 55_[+2]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAMCCACTRVRCYAHVNVRSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAMCCACTRVRCYAHVNVRSC width=21 seqs=120 chrXIII:768166-768675 ( 51) TACCGACTACGCCACACGCCC 1 chrXI:219606-220151 ( 67) TACCGACTACGCCACACGCCC 1 chrX:197093-197625 ( 56) TACCGACTACGCCACACGCCC 1 chrVI:204779-205234 ( 20) TACCGACTACGCCACACGCCC 1 chrXV:853991-854439 ( 74) TACCAACTGCGCCATGTGCCC 1 chrXII:214679-215166 ( 63) TACCAACTGCGCCATGTGCCC 1 chrXVI:689225-689886 ( 60) TAACCACTCGGCCATAGTGCC 1 chrXIV:95958-96649 ( 39) TAACCACTACACTAACCGCCC 1 chrXIII:258925-259500 ( 57) TAACCACTCGGCCAAGTTGCC 1 chrIV:1305194-1306043 ( 62) TAACCACTCGGCCAAGTTGCC 1 chrIV:980749-981280 ( 71) TAACCACTCGGCCAAGTTGCC 1 chrIV:437517-438047 ( 40) TAACCACTCGGCCAAGTTGCC 1 chrIII:227733-228246 ( 3) TAACCACTCGGCCATAGTGCC 1 chrII:226828-227416 ( 3) TAACCACTCGGCCAAGTTGCC 1 chrXII:605149-605645 ( 65) TAACCACTGAGCTACACGAGC 1 chrIV:884147-884661 ( 7) TAACCACTGAGCTACACGAGC 1 chrXIV:602108-602596 ( 10) AACCAACTGGGCCAAGAGACC 1 chrXII:1051876-1052414 ( 29) AACCAACTGGGCCAAGAGACC 1 chrXII:734548-735067 ( 45) AACCAACTGGGCCAAGAGACC 1 chrXII:448486-448979 ( 19) TAACCACTACACTATAGGACC 1 chrV:442953-443536 ( 61) AACCAACTGGGCCAAGAGACC 1 chrV:250108-250559 ( 3) TAACCACTACACTATAGGACC 1 chrIV:802496-803041 ( 64) TAACCACTACACTATAGGACC 1 chrIV:645016-645399 ( 47) TAACCACTACACTATAGGACC 1 chrIII:168086-168636 ( 41) TAACCACTACACTATAGGACC 1 chrII:197198-197871 ( 10) AACCAACTGGGCCAAGAGACC 1 chrXV:274449-274995 ( 1) TAACCACTCGGCCACTGGGAC 1 chrXII:784068-784592 ( 74) TAACCACTCGGCCACTGGGAC 1 chrXVI:581665-582456 ( 52) TACCGATTGCGCCAACAAGGC 1 chrXIII:480335-481037 ( 37) TACCGATTGCGCCAACAAGGC 1 chrVII:876026-876739 ( 62) TACCGATTGCGCCAACAAGGC 1 chrVII:185331-186253 ( 24) TACCGATTGCGCCAACAAGGC 1 chrVII:122034-122509 ( 48) TACCGATTGCGCCAACAAGGC 1 chrV:135171-135731 ( 76) TACCGATTGCGCCAACAAGGC 1 chrIX:299933-300630 ( 49) TACCGATTGCGCCAACAAGGC 1 chrIV:1352261-1352755 ( 60) TACCGATTGCGCCAACAAGGC 1 chrIV:1201468-1202055 ( 39) TACCGATTGCGCCAACAAGGC 1 chrXV:464232-464681 ( 44) ATACCACTAGACCACACGCCC 1 chrXV:300771-301406 ( 59) ATACCACTAGACCACACGCCC 1 chrXIII:195890-196444 ( 33) ATACCACTAGACCACACGCCC 1 chrVI:101172-101650 ( 15) ATACCACTAGACCACACGCCC 1 chrI:138930-139428 ( 23) ATACCACTAGACCACACGCCC 1 chrXIII:420313-420933 ( 68) AACCGACTAGACCACGAAACC 1 chrXIII:372215-372749 ( 66) AACCGACTAGACCACGAAACC 1 chrXII:687626-688276 ( 11) AACCGACTAGACCACGAAACC 1 chrXI:307935-308443 ( 58) AACCGACTAGACCACGAAACC 1 chrX:378122-378570 ( 64) AACCGACTAGACCACGAAACC 1 chrVII:823240-823727 ( 49) AACCGACTAGACCACGAAACC 1 chrVII:412097-412585 ( 56) AACCGACTAGACCACGAAACC 1 chrII:350575-351166 ( 7) TAACCACTACACTATAAAACC 1 chrXVI:775611-776054 ( 34) CTACCACTGCGCCATACGAGC 1 chrVII:706915-707351 ( 76) CTACCACTGCGCCATACGAGC 1 chrII:642847-643253 ( 58) CTACCACTGCGCCATACGAGC 1 chrXV:113512-114082 ( 55) TACCAACTTGGCCATAGAAGC 1 chrXIV:560457-561028 ( 53) TACCAACTTGGCCATAGAAGC 1 chrXII:731890-732312 ( 39) AAACCACTCGGCCAAACTCCC 1 chrX:617686-618173 ( 40) AAACCACTCGGCCAAACTCCC 1 chrIX:174806-175338 ( 9) TACCAACTTGGCCATAGAAGC 1 chrII:405565-406251 ( 20) TTGCCATTACGCCACGCGAGC 1 chrXVI:743865-744678 ( 63) CTACCACTAAGCTAAGGAGGC 1 chrVII:1004018-1004417 ( 49) CTACCACTAAGCTAAGGAGGC 1 chrVII:661527-661954 ( 59) CTACCACTAAGCTAAGGAGGC 1 chrXVI:860135-860691 ( 16) TTACCACTAAACCACTTGCGC 1 chrXV:281837-282503 ( 44) TTACCACTAAACCACTTGCGC 1 chrXV:226463-226885 ( 37) TTACCACTAAACCACTTGCGC 1 chrXIII:183652-184211 ( 67) TTACCACTAAACCACTTGCGC 1 chrX:531401-532255 ( 50) TTACCACTAAACCACTTGCGC 1 chrIV:992549-993073 ( 71) TTACCACTAAACCACTTGCGC 1 chrIV:83304-83832 ( 30) TTACCACTAAACCACTTGCGC 1 chrIV:1256863-1257302 ( 27) TAACCACTGAACCACTTTCGC 1 chrXIII:362789-363337 ( 51) TAACCACTATACTAAGATGGC 1 chrXI:313184-313688 ( 66) TAACCACTATACTAAGATGGC 1 chrVIII:62535-62973 ( 51) TAACCACTATACTAAGATGGC 1 chrVII:110421-110956 ( 38) TAACCACTATACTAAGATGGC 1 chrV:434362-434781 ( 71) TAACCACTATACTAAGATGGC 1 chrXII:489304-489556 ( 39) CACCCACTACACTACTCGGTC 1 chrXII:468750-468993 ( 62) CACCCACTACACTACTCGGTC 1 chrX:538329-538792 ( 45) TTACCATTACGCCAACGGAAC 1 chrXVI:810428-810918 ( 53) AACCAACTTGGCCATGGAGTC 1 chrXV:487198-487712 ( 34) AACCAACTTGGCCATGGAGTC 1 chrXV:228051-228594 ( 59) AACCAACTTGGCCATGGAGTC 1 chrXIV:632371-632897 ( 15) AACCAACTTGGCCATGGAGTC 1 chrXI:74421-74898 ( 15) AACCAACTTGGCCATGGAGTC 1 chrVI:137223-137937 ( 9) AACCAACTTGGCCATGGAGTC 1 chrVII:115241-115775 ( 30) TACCAACTGAGCTAACAAGGA 1 chrIV:359316-359898 ( 20) TACCAACTGAGCTAACAAGGA 1 chrX:424291-424749 ( 25) AGACCACTCGGCCAACCCTCC 1 chrVII:857218-857687 ( 69) AGACCGCTCGGCCAAACAACC 1 chrII:347380-347920 ( 3) AGACCACTCGGCCAACCCTCC 1 chrII:9327-9936 ( 2) AGACCACTCGGCCAACCCTCC 1 chrXVI:559964-560530 ( 72) TCCCAACTGAGCTAAATCCGC 1 chrVIII:358283-358854 ( 31) TCCCAACTGAGCTAAATCCGC 1 chrVIII:237667-238157 ( 57) TCCCAACTGAGCTAAATCCGC 1 chrII:36153-36594 ( 75) TCCCAACTGAGCTAAATCCGC 1 chrVIII:475537-475921 ( 79) TAGCCGCTACACTATTGGAAC 1 chrIV:1075263-1075756 ( 65) TAGCCGCTACACTATTGGAAC 1 chrVIII:505215-506236 ( 10) ATGCCATTGCGCTAACGAAAC 1 chrXV:723785-724231 ( 37) AACCGACTCTACCAACAGACA 1 chrXIII:463233-463914 ( 31) TGACCATTAAACTATCACGGA 1 chrX:374183-374787 ( 40) TGACCATTAAACTATCACGGA 1 chrX:355123-355740 ( 75) TGACCATTAAACTATCACGGA 1 chrIX:336127-336698 ( 38) TGACCATTAAACTATCACGGA 1 chrIX:324066-324627 ( 58) TGACCATTAAACTATCACGGA 1 chrIV:1016962-1017641 ( 7) TAGCCGTTACACTACATCGGA 1 chrIV:568675-569247 ( 53) TGACCATTAAACTATCACGGA 1 chrXV:287975-288483 ( 13) AACCAACTTGGCTACCGAGAG 1 chrXIII:168564-169084 ( 21) AACCAACTTGGCTACCGAGAG 1 chrX:542747-543276 ( 63) AACCAACTTGGCTACCGAGAG 1 chrVI:167227-167724 ( 12) AACCAACTTGGCTACCGAGAG 1 chrXIII:572601-573260 ( 55) TTCCTACTGAGCTACTGAAGC 1 chrXVI:209904-210560 ( 61) TAGCCGTTACACTATATCGGA 1 chrXIII:290401-291155 ( 73) TAGCCGTTACACTATATCGGA 1 chrVII:541581-542183 ( 18) TAGCCGTTACACTATATCGGA 1 chrVII:401334-401803 ( 60) TAGCCGTTACACTATATCGGA 1 chrV:486924-487850 ( 45) TAGCCGTTACACTATATCGGA 1 chrIX:370212-370695 ( 14) TAGCCGTTACACTATATCGGA 1 chrIII:82205-82809 ( 56) TAGCCGTTACACTATATCGGA 1 chrXI:302656-303255 ( 13) CTACCATTGAGCCACCGCTTC 1 chrX:745210-745734 ( 18) ATCCAACTCCACTACCATTAC 1 chrX:517640-518077 ( 56) CTTCCACTGCGCCACGGCGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAMCCACTRVRCYAHVNVRSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 45200 bayes= 8.47814 E= 7.1e-259 -8 -114 -1355 96 109 -246 -114 -60 56 121 -88 -524 -1355 244 -1355 -1355 -49 169 -7 -524 152 -1355 -100 -1355 -1355 208 -1355 -49 -1355 -1355 -1355 166 61 -38 54 -155 -49 93 103 -266 45 -1355 162 -1355 -1355 244 -1355 -1355 -1355 171 -1355 34 166 -1355 -1355 -1355 18 86 -1355 -4 8 44 67 -134 -4 12 54 -49 0 6 96 -125 -16 24 132 -292 -179 103 132 -208 -116 215 -246 -524 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAMCCACTRVRCYAHVNVRSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 120 E= 7.1e-259 0.300000 0.083333 0.000000 0.616667 0.675000 0.033333 0.083333 0.208333 0.466667 0.425000 0.100000 0.008333 0.000000 1.000000 0.000000 0.000000 0.225000 0.591667 0.175000 0.008333 0.908333 0.000000 0.091667 0.000000 0.000000 0.775000 0.000000 0.225000 0.000000 0.000000 0.000000 1.000000 0.483333 0.141667 0.266667 0.108333 0.225000 0.350000 0.375000 0.050000 0.433333 0.000000 0.566667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.400000 1.000000 0.000000 0.000000 0.000000 0.358333 0.333333 0.000000 0.308333 0.333333 0.250000 0.291667 0.125000 0.308333 0.200000 0.266667 0.225000 0.316667 0.191667 0.358333 0.133333 0.283333 0.216667 0.458333 0.041667 0.091667 0.375000 0.458333 0.075000 0.141667 0.816667 0.033333 0.008333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAMCCACTRVRCYAHVNVRSC MEME-2 regular expression -------------------------------------------------------------------------------- [TA][AT][AC]C[CA]A[CT]T[AG][GCA][GA]C[CT]A[ACT][AGC][AGTC][GA][GAC][GC]C -------------------------------------------------------------------------------- Time 590.18 secs. ******************************************************************************** ******************************************************************************** MOTIF CRRGAYTCGAACYKGCGCGGGCAAAGCCCM MEME-3 width = 30 sites = 16 llr = 494 E-value = 2.6e-090 ******************************************************************************** -------------------------------------------------------------------------------- Motif CRRGAYTCGAACYKGCGCGGGCAAAGCCCM MEME-3 Description -------------------------------------------------------------------------------- Simplified A :6436::::a8::1::3:1:138991:::6 pos.-specific C 8:::3639:::a61:a:a:3:63:1196a4 probability G :4681:::a::::3a:8:989::1:813:: matrix T 3::::481::3:45:::::::1:::::1:: bits 2.4 * * ** * * 2.2 * * ** * * 2.0 * * ** * * * 1.7 *** * ** **** * * Relative 1.5 * * *** * ******* * * Entropy 1.2 * ** * *** ** ******* **** * (44.6 bits) 1.0 **** ***** ** ******* ******** 0.7 ************* **************** 0.5 ************* **************** 0.2 ****************************** 0.0 ------------------------------ Multilevel CAGGACTCGAACCTGCGCGGGCAAAGCCCA consensus TGAACTC T TG A C AC G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRRGAYTCGAACYKGCGCGGGCAAAGCCCM MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXIII:258925-259500 + 5 4.92e-20 ACTG CAGGACTCGAACCTGCGCGGGCAAAGCCCA AAAGATTTCT chrXII:167634-168236 + 68 4.92e-20 ACGACAACTG CAGGACTCGAACCTGCGCGGGCAAAGCCCA AAA chrX:523742-524311 + 45 4.92e-20 ACGACAACTG CAGGACTCGAACCTGCGCGGGCAAAGCCCA AAAGATTTCT chrVII:561370-561949 + 62 4.92e-20 ACGACAACTG CAGGACTCGAACCTGCGCGGGCAAAGCCCA AAAGATTTC chrIV:980749-981280 + 19 4.92e-20 ACGACAACTG CAGGACTCGAACCTGCGCGGGCAAAGCCCA AAAGATTTCT chrII:226828-227416 - 46 4.92e-20 ACGACAACTG CAGGACTCGAACCTGCGCGGGCAAAGCCCA AAAGATTTCT chrV:288133-288754 + 59 2.93e-15 ACGACACCAG CAGGATTTGAACCAGCGCGGGCAGAGCCCA ACAGATTTCA chrIII:227733-228246 - 65 2.93e-15 CACCAG CAGGATTTGAACCAGCGCGGGCAGAGCCCA AGAGATAGCC chrXV:274449-274995 - 63 1.62e-14 GTCACAGA CAGGATTCGAACCTGCGCAGGTAAAACCCA ATGCCTAATT chrIV:1150366-1151330 + 53 1.62e-14 GCGTCACAGA CAGGATTCGAACCTGCGCAGGTAAAACCCA ATGCCTAATT chrXIII:463233-463914 - 57 5.63e-13 GACGGGGAAT TGAACCCCGATCTGGCACGCGACAAGCGCC CATTCTGACC chrX:374183-374787 + 5 5.63e-13 GAAT TGAACCCCGATCTGGCACGCGACAAGCGCC CATTCTGACC chrIX:336127-336698 + 3 5.63e-13 AT TGAACCCCGATCTGGCACGCGACAAGCGCC CATTCTGACC chrIX:324066-324627 + 23 5.63e-13 GACGGGGAAT TGAACCCCGATCTGGCACGCGACAAGCGCC CATTCTGACC chrII:347380-347920 - 48 1.55e-12 CTGAAGGATG CGAGGTTCGAACTCGCGCGGACAACCGTCC AACAGATCTT chrII:9327-9936 - 47 1.55e-12 CTGAAGGATG CGAGGTTCGAACTCGCGCGGACAACCGTCC AACAGATCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRRGAYTCGAACYKGCGCGGGCAAAGCCCM MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:258925-259500 4.9e-20 4_[+3]_66 chrXII:167634-168236 4.9e-20 67_[+3]_3 chrX:523742-524311 4.9e-20 44_[+3]_26 chrVII:561370-561949 4.9e-20 61_[+3]_9 chrIV:980749-981280 4.9e-20 18_[+3]_52 chrII:226828-227416 4.9e-20 45_[-3]_25 chrV:288133-288754 2.9e-15 58_[+3]_12 chrIII:227733-228246 2.9e-15 64_[-3]_6 chrXV:274449-274995 1.6e-14 62_[-3]_8 chrIV:1150366-1151330 1.6e-14 52_[+3]_18 chrXIII:463233-463914 5.6e-13 56_[-3]_14 chrX:374183-374787 5.6e-13 4_[+3]_66 chrIX:336127-336698 5.6e-13 2_[+3]_68 chrIX:324066-324627 5.6e-13 22_[+3]_48 chrII:347380-347920 1.6e-12 47_[-3]_23 chrII:9327-9936 1.6e-12 46_[-3]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRRGAYTCGAACYKGCGCGGGCAAAGCCCM MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CRRGAYTCGAACYKGCGCGGGCAAAGCCCM width=30 seqs=16 chrXIII:258925-259500 ( 5) CAGGACTCGAACCTGCGCGGGCAAAGCCCA 1 chrXII:167634-168236 ( 68) CAGGACTCGAACCTGCGCGGGCAAAGCCCA 1 chrX:523742-524311 ( 45) CAGGACTCGAACCTGCGCGGGCAAAGCCCA 1 chrVII:561370-561949 ( 62) CAGGACTCGAACCTGCGCGGGCAAAGCCCA 1 chrIV:980749-981280 ( 19) CAGGACTCGAACCTGCGCGGGCAAAGCCCA 1 chrII:226828-227416 ( 46) CAGGACTCGAACCTGCGCGGGCAAAGCCCA 1 chrV:288133-288754 ( 59) CAGGATTTGAACCAGCGCGGGCAGAGCCCA 1 chrIII:227733-228246 ( 65) CAGGATTTGAACCAGCGCGGGCAGAGCCCA 1 chrXV:274449-274995 ( 63) CAGGATTCGAACCTGCGCAGGTAAAACCCA 1 chrIV:1150366-1151330 ( 53) CAGGATTCGAACCTGCGCAGGTAAAACCCA 1 chrXIII:463233-463914 ( 57) TGAACCCCGATCTGGCACGCGACAAGCGCC 1 chrX:374183-374787 ( 5) TGAACCCCGATCTGGCACGCGACAAGCGCC 1 chrIX:336127-336698 ( 3) TGAACCCCGATCTGGCACGCGACAAGCGCC 1 chrIX:324066-324627 ( 23) TGAACCCCGATCTGGCACGCGACAAGCGCC 1 chrII:347380-347920 ( 48) CGAGGTTCGAACTCGCGCGGACAACCGTCC 1 chrII:9327-9936 ( 47) CGAGGTTCGAACTCGCGCGGACAACCGTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRRGAYTCGAACYKGCGCGGGCAAAGCCCM MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 40115 bayes= 10.4428 E= 2.6e-090 -1064 203 -1064 -34 98 -1064 103 -1064 25 -1064 177 -1064 -34 -1064 203 -1064 98 44 -56 -1064 -1064 177 -1064 25 -1064 44 -1064 125 -1064 225 -1064 -134 -1064 -1064 244 -1064 166 -1064 -1064 -1064 125 -1064 -1064 -34 -1064 244 -1064 -1064 -1064 177 -1064 25 -134 -56 44 66 -1064 -1064 244 -1064 -1064 244 -1064 -1064 -34 -1064 203 -1064 -1064 244 -1064 -1064 -134 -1064 225 -1064 -1064 44 203 -1064 -134 -1064 225 -1064 -34 177 -1064 -134 125 44 -1064 -1064 147 -1064 -56 -1064 147 -56 -1064 -1064 -134 -56 203 -1064 -1064 225 -56 -1064 -1064 177 44 -134 -1064 244 -1064 -1064 98 103 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRRGAYTCGAACYKGCGCGGGCAAAGCCCM MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 16 E= 2.6e-090 0.000000 0.750000 0.000000 0.250000 0.625000 0.000000 0.375000 0.000000 0.375000 0.000000 0.625000 0.000000 0.250000 0.000000 0.750000 0.000000 0.625000 0.250000 0.125000 0.000000 0.000000 0.625000 0.000000 0.375000 0.000000 0.250000 0.000000 0.750000 0.000000 0.875000 0.000000 0.125000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.625000 0.000000 0.375000 0.125000 0.125000 0.250000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.000000 0.250000 0.750000 0.000000 0.125000 0.000000 0.875000 0.000000 0.250000 0.625000 0.000000 0.125000 0.750000 0.250000 0.000000 0.000000 0.875000 0.000000 0.125000 0.000000 0.875000 0.125000 0.000000 0.000000 0.125000 0.125000 0.750000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.625000 0.250000 0.125000 0.000000 1.000000 0.000000 0.000000 0.625000 0.375000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRRGAYTCGAACYKGCGCGGGCAAAGCCCM MEME-3 regular expression -------------------------------------------------------------------------------- [CT][AG][GA][GA][AC][CT][TC]CGA[AT]C[CT][TG]GC[GA]CG[GC]G[CA][AC]AAGC[CG]C[AC] -------------------------------------------------------------------------------- Time 854.27 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:4-1221 7.75e-01 100 chrI:81878-82304 1.23e-01 100 chrI:138930-139428 9.37e-06 22_[-2(2.00e-08)]_57 chrI:141712-143611 4.50e-01 100 chrI:166008-166926 5.99e-01 100 chrI:180955-181512 9.57e-02 100 chrI:182333-183078 2.96e-01 100 chrI:229120-230180 1.73e-01 100 chrII:9327-9936 3.76e-13 1_[-2(8.09e-07)]_24_[-3(1.55e-12)]_\ 24 chrII:36153-36594 4.14e-03 74_[-2(1.26e-06)]_5 chrII:44953-45383 7.10e-01 100 chrII:60630-61286 6.19e-01 100 chrII:87953-88592 9.35e-01 100 chrII:88944-90018 9.40e-01 100 chrII:164462-165858 1.26e-01 100 chrII:167767-169705 9.29e-02 66_[+2(5.98e-05)]_13 chrII:181291-181678 4.61e-01 100 chrII:197198-197871 7.77e-13 9_[-2(8.89e-09)]_19_[-1(9.18e-11)]_\ 29 chrII:226828-227416 5.23e-21 2_[-2(5.26e-09)]_22_[-3(4.92e-20)]_\ 25 chrII:254842-257163 1.77e-01 100 chrII:266147-266711 1.44e-05 37_[-1(8.62e-09)]_41 chrII:326541-327340 9.57e-01 100 chrII:332181-334251 9.77e-01 100 chrII:347380-347920 3.76e-13 2_[-2(8.09e-07)]_24_[-3(1.55e-12)]_\ 23 chrII:350575-351166 3.15e-11 6_[-2(4.16e-08)]_17_[-1(2.23e-09)]_\ 34 chrII:376245-377290 2.51e-01 100 chrII:405565-406251 4.89e-10 19_[-2(5.49e-08)]_17_[-1(1.77e-09)]_\ 21 chrII:415488-415943 2.14e-01 100 chrII:476893-477817 7.70e-01 100 chrII:554906-558524 1.60e-01 100 chrII:592335-593480 8.77e-01 100 chrII:604058-607729 5.02e-01 100 chrII:642847-643253 6.83e-09 18_[+1(6.94e-08)]_17_[+2(4.78e-08)]_\ 22 chrII:644978-645460 1.24e-06 35_[-1(9.75e-10)]_43 chrII:680361-682207 7.27e-01 100 chrIII:1-1514 1.04e-01 100 chrIII:11065-11546 8.77e-01 100 chrIII:13922-16921 7.29e-01 100 chrIII:68345-68716 9.21e-01 100 chrIII:78148-78850 9.72e-01 100 chrIII:82205-82809 6.26e-09 16_[+1(9.75e-10)]_17_[+2(6.30e-06)]_\ 24 chrIII:122887-123893 7.92e-02 43_[+2(6.72e-05)]_36 chrIII:127509-128080 9.56e-05 11_[-1(1.14e-08)]_67 chrIII:142241-143022 6.25e-01 100 chrIII:162097-164280 8.30e-01 100 chrIII:168086-168636 4.19e-11 1_[+1(2.23e-09)]_17_[+2(8.89e-09)]_\ 39 chrIII:177060-179247 9.96e-01 100 chrIII:227733-228246 2.26e-16 2_[-2(5.26e-09)]_41_[-3(2.93e-15)]_\ 6 chrIII:292648-293057 6.81e-01 100 chrIII:294602-295897 4.97e-01 100 chrIII:315627-316619 6.15e-01 100 chrIV:97-320 1.96e-01 100 chrIV:83304-83832 3.18e-11 29_[-2(1.05e-07)]_16_[-1(1.10e-09)]_\ 12 chrIV:116871-118233 1.35e-01 100 chrIV:118441-119082 5.59e-01 100 chrIV:129403-131269 9.23e-01 100 chrIV:217128-218049 9.47e-02 12_[-2(9.79e-05)]_67 chrIV:221203-222367 4.40e-01 100 chrIV:229407-230733 2.89e-01 100 chrIV:307834-308966 7.08e-01 100 chrIV:309247-309973 1.01e-01 100 chrIV:321598-323635 6.12e-01 100 chrIV:340104-340964 9.88e-01 100 chrIV:341139-341630 6.68e-01 100 chrIV:354789-357014 4.49e-02 100 chrIV:357939-358485 9.56e-01 100 chrIV:359316-359898 7.08e-04 19_[-2(3.69e-07)]_60 chrIV:410168-410767 1.32e-06 [-1(5.16e-10)]_78 chrIV:411193-411760 1.53e-02 100 chrIV:433921-434593 1.46e-05 68_[+1(8.62e-09)]_10 chrIV:437517-438047 6.07e-05 39_[-2(5.26e-09)]_40 chrIV:488471-489158 3.24e-07 44_[+1(1.10e-09)]_34 chrIV:490524-491298 6.57e-01 100 chrIV:492172-492689 3.42e-01 100 chrIV:508743-510456 6.33e-01 100 chrIV:519532-521427 4.13e-01 100 chrIV:525037-525357 6.46e-01 100 chrIV:538931-539578 6.70e-01 100 chrIV:540872-542548 9.61e-01 100 chrIV:568675-569247 2.40e-09 8_[-1(1.77e-09)]_22_[-2(4.27e-06)]_\ 27 chrIV:578952-580702 3.64e-01 100 chrIV:591881-592323 8.16e-01 100 chrIV:619643-620305 5.50e-05 56_[+1(8.58e-08)]_22 chrIV:645016-645399 7.40e-12 7_[+1(2.23e-09)]_17_[+2(8.89e-09)]_\ 33 chrIV:667755-668264 4.72e-07 59_[+1(9.18e-11)]_19 chrIV:802496-803041 7.40e-12 24_[+1(2.23e-09)]_17_[+2(8.89e-09)]_\ 16 chrIV:835785-836326 7.80e-01 100 chrIV:884147-884661 9.56e-08 6_[-2(6.29e-09)]_73 chrIV:913916-916285 7.34e-02 13_[+3(9.75e-05)]_57 chrIV:946141-946642 2.31e-06 25_[-1(1.58e-09)]_53 chrIV:980749-981280 5.23e-21 18_[+3(4.92e-20)]_22_[+2(5.26e-09)]_\ 9 chrIV:992549-993073 6.83e-05 70_[-2(1.05e-07)]_9 chrIV:1012731-1013984 6.69e-01 100 chrIV:1016962-1017641 5.36e-03 6_[+2(4.27e-06)]_73 chrIV:1075263-1075756 8.04e-10 24_[+1(3.95e-10)]_18_[+2(2.80e-06)]_\ 15 chrIV:1095082-1095720 1.60e-06 30_[+1(2.26e-10)]_48 chrIV:1150366-1151330 4.24e-10 52_[+3(1.62e-14)]_18 chrIV:1175579-1176292 9.86e-01 100 chrIV:1201468-1202055 1.13e-10 38_[-2(1.71e-08)]_18_[-1(3.10e-09)]_\ 1 chrIV:1236445-1238472 5.11e-01 100 chrIV:1256863-1257302 1.23e-03 26_[+2(1.70e-07)]_53 chrIV:1278671-1279049 1.52e-01 100 chrIV:1300547-1301397 8.90e-02 8_[+3(9.24e-05)]_62 chrIV:1305194-1306043 4.70e-05 61_[-2(5.26e-09)]_18 chrIV:1352261-1352755 2.89e-10 19_[+1(3.10e-09)]_18_[+2(1.71e-08)]_\ 20 chrIV:1355658-1356066 9.95e-01 100 chrIV:1359097-1361176 4.24e-01 100 chrIV:1401217-1401910 8.92e-01 100 chrIV:1450534-1451299 9.67e-01 100 chrIV:1461470-1462350 6.16e-02 58_[-2(4.40e-05)]_21 chrIV:1488951-1490034 9.47e-01 100 chrIV:1523998-1525649 7.50e-01 100 chrIX:1-219 7.73e-01 100 chrIX:67664-69936 6.03e-01 100 chrIX:98905-100060 9.02e-01 100 chrIX:174806-175338 5.30e-10 8_[-2(5.49e-08)]_18_[-1(8.62e-09)]_\ 31 chrIX:183100-183732 5.99e-01 100 chrIX:197352-198010 6.28e-01 100 chrIX:210500-211049 8.54e-01 100 chrIX:232705-233284 9.84e-01 100 chrIX:248627-250111 7.47e-03 28_[-1(1.27e-05)]_50 chrIX:254236-257161 8.30e-01 100 chrIX:257325-258715 9.92e-01 100 chrIX:299933-300630 2.89e-10 8_[+1(3.10e-09)]_18_[+2(1.71e-08)]_\ 31 chrIX:316107-317465 8.36e-01 100 chrIX:324066-324627 5.70e-13 22_[+3(5.63e-13)]_5_[+2(4.27e-06)]_\ 22 chrIX:325511-326260 7.06e-01 100 chrIX:336127-336698 2.21e-11 2_[+3(5.63e-13)]_5_[+2(4.27e-06)]_\ 42 chrIX:370212-370695 6.26e-09 13_[-2(6.30e-06)]_17_[-1(9.75e-10)]_\ 27 chrIX:438560-439885 6.68e-01 100 chrV:6142-6598 7.29e-01 100 chrV:13320-13595 6.30e-01 100 chrV:51846-52847 7.07e-01 100 chrV:53515-54320 7.40e-01 100 chrV:61028-62203 3.45e-01 100 chrV:66902-68573 2.04e-03 44_[-2(5.31e-05)]_35 chrV:84819-86916 4.13e-01 100 chrV:99926-100441 9.98e-04 37_[-1(4.08e-07)]_41 chrV:109931-110959 5.93e-01 100 chrV:117509-118358 5.97e-01 100 chrV:130729-131394 7.16e-03 41_[-2(4.12e-05)]_38 chrV:135171-135731 2.16e-10 35_[+1(3.10e-09)]_18_[+2(1.71e-08)]_\ 4 chrV:138168-140935 3.62e-02 [-2(6.53e-05)]_79 chrV:152080-153062 6.52e-01 100 chrV:176846-177622 3.57e-01 100 chrV:206715-207692 5.17e-01 100 chrV:250108-250559 7.40e-12 2_[-2(8.89e-09)]_17_[-1(2.23e-09)]_\ 38 chrV:269763-270731 7.57e-01 100 chrV:288133-288754 2.20e-11 58_[+3(2.93e-15)]_12 chrV:303057-303670 5.17e-01 100 chrV:305138-306847 2.94e-01 100 chrV:311711-312320 2.26e-06 69_[+1(3.95e-10)]_9 chrV:321530-323303 1.00e+00 100 chrV:354675-355477 2.11e-01 100 chrV:362143-362525 5.37e-01 100 chrV:363656-364084 9.40e-01 100 chrV:396149-397413 6.29e-01 100 chrV:406206-409400 8.59e-01 100 chrV:422726-425369 9.72e-02 100 chrV:430920-431584 5.87e-02 44_[+1(2.25e-05)]_34 chrV:434362-434781 7.06e-08 31_[+1(1.05e-07)]_17_[+2(2.40e-07)]_\ 9 chrV:435034-436049 5.29e-01 100 chrV:438448-439267 9.60e-01 100 chrV:441774-442639 5.54e-01 100 chrV:442953-443536 7.77e-13 19_[+1(9.18e-11)]_19_[+2(8.89e-09)]_\ 19 chrV:469247-469780 4.12e-06 33_[-1(5.16e-10)]_45 chrV:486924-487850 6.26e-09 5_[+1(9.75e-10)]_17_[+2(6.30e-06)]_\ 35 chrV:491168-492583 7.32e-02 100 chrV:550970-551587 2.11e-07 68_[+1(9.18e-11)]_10 chrVI:4474-4992 8.33e-02 100 chrVI:64062-65375 9.81e-01 100 chrVI:95434-95912 7.53e-02 100 chrVI:101172-101650 9.37e-06 14_[-2(2.00e-08)]_65 chrVI:137223-137937 1.19e-03 8_[+2(3.32e-07)]_71 chrVI:157664-158933 6.45e-01 100 chrVI:161640-162448 9.78e-01 100 chrVI:167227-167724 1.05e-08 11_[-2(4.57e-06)]_34_[-1(1.58e-09)]_\ 12 chrVI:180610-181269 9.55e-01 100 chrVI:190842-191816 9.48e-01 100 chrVI:204779-205234 1.62e-07 19_[+2(6.99e-10)]_60 chrVI:210422-210884 1.94e-06 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******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************