Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.024578 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.056823 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.086534 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.019044 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background Finished invoke: name: bg status: 0 time: 0.01944 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 887.675157 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 69.26274 Invoking: centrimo -seqlen 517 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.18437 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.335995 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background -primary AGRTCMBSGGTTCGATYCCSV /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.68096 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background -primary DTGGYYYAGTKGKTWRAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.680683 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background -primary HRCACCCATRCAYCHYAH /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.565019 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background -primary AACTTGRC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.323823 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background -primary AAGGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.366121 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background -primary AAAAADA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.677994 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background -primary AGACCRC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.295088 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.318185 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background -primary ATCTTYTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.301109 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background -primary AARATAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.485234 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background -primary CRTGCAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.267165 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background -primary AGARTCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.292581 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background -primary AGAYCGGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.25883 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background -primary GCGCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.32952 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background -primary ACTCASG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.29225 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background -primary TCAGWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 0.510165 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background -primary RCGGGGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml Finished invoke: name: spamo17 status: 0 time: 0.293637 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background --motif AGRTCMBSGGTTCGATYCCSV /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa Finished invoke: name: fimo1 status: 0 time: 0.274874 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background --motif DTGGYYYAGTKGKTWRAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa Finished invoke: name: fimo2 status: 0 time: 0.264413 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background --motif HRCACCCATRCAYCHYAH /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa Finished invoke: name: fimo3 status: 0 time: 0.270736 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background --motif AACTTGRC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa Finished invoke: name: fimo4 status: 0 time: 0.162068 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background --motif AAGGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa Finished invoke: name: fimo5 status: 0 time: 0.151152 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background --motif AAAAADA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa Finished invoke: name: fimo6 status: 0 time: 0.144707 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background --motif AGACCRC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa Finished invoke: name: fimo7 status: 0 time: 0.161699 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa Finished invoke: name: fimo8 status: 0 time: 0.173612 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background --motif ATCTTYTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa Finished invoke: name: fimo9 status: 0 time: 0.185756 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background --motif AARATAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa Finished invoke: name: fimo10 status: 0 time: 0.152379 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background --motif CRTGCAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa Finished invoke: name: fimo11 status: 0 time: 0.159677 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background --motif AGARTCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa Finished invoke: name: fimo12 status: 0 time: 0.169041 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background --motif AGAYCGGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa Finished invoke: name: fimo13 status: 0 time: 0.165836 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background --motif GCGCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa Finished invoke: name: fimo14 status: 0 time: 0.174547 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background --motif ACTCASG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa Finished invoke: name: fimo15 status: 0 time: 0.164986 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background --motif TCAGWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa Finished invoke: name: fimo16 status: 0 time: 0.163477 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/background --motif RCGGGGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/BY4742--HAA1.fa Finished invoke: name: fimo17 status: 0 time: 0.172598 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--HAA1/summary.tsv Finished invoke: name: summary status: 0 time: 0.187875 Done