Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.056356 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.169727 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.312288 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.034226 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.177056 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background Finished invoke: name: bg status: 0 time: 0.048694 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 1140.017796 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/seqs-shuffled Finished invoke: name: dreme status: 0 time: 74.753768 Invoking: centrimo -seqlen 508 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.154426 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.332162 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background -primary SGGRATCGAACCSVKGAYCTY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.635973 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background -primary BDTGGYYYAGTKGKTWRAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.634206 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background -primary GYCCAAMAGATTTYWARTCTK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.372209 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background -primary AAAAADA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.585848 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background -primary CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.344914 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background -primary ACCCAYA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.306715 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background -primary AGATCGKG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.229575 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background -primary GATGKCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.306521 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background -primary CCGTGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.261262 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background -primary CTATCAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.253216 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background -primary GAAGAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.396873 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background -primary CTTAGCAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.259521 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background -primary ACAGGGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.250203 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background -primary GCMCCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.376689 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background -primary AAGRTTAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.267406 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background --motif SGGRATCGAACCSVKGAYCTY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo1 status: 0 time: 0.432811 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background --motif BDTGGYYYAGTKGKTWRAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo2 status: 0 time: 0.396241 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background --motif GYCCAAMAGATTTYWARTCTK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo3 status: 0 time: 0.397878 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background --motif AAAAADA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo4 status: 0 time: 0.252435 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background --motif CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo5 status: 0 time: 0.297295 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background --motif ACCCAYA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo6 status: 0 time: 0.302987 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background --motif AGATCGKG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo7 status: 0 time: 0.281949 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background --motif GATGKCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo8 status: 0 time: 0.288335 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background --motif CCGTGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo9 status: 0 time: 0.29117 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background --motif CTATCAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo10 status: 0 time: 0.26864 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background --motif GAAGAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo11 status: 0 time: 0.284774 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background --motif CTTAGCAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo12 status: 0 time: 0.295552 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background --motif ACAGGGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo13 status: 0 time: 0.289759 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background --motif GCMCCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo14 status: 0 time: 0.505263 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background --motif AAGRTTAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo15 status: 0 time: 0.297851 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/summary.tsv Finished invoke: name: summary status: 0 time: 0.476276 Done