******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:167866-169658 1.0000 100 chrVII:1000134-1000704 1.0000 100 chrXIV:725960-726412 1.0000 100 chrVI:162031-162483 1.0000 100 chrXI:99692-100095 1.0000 100 chrI:71609-73674 1.0000 100 chrIV:1278599-1279356 1.0000 100 chrXVI:810443-810867 1.0000 100 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1.0000 100 chrXV:1027864-1029344 1.0000 100 chrXII:234549-234908 1.0000 100 chrX:542770-542870 1.0000 100 chrXIII:372208-372731 1.0000 100 chrXII:780594-781878 1.0000 100 chrII:347404-347896 1.0000 100 chrXV:968046-968458 1.0000 100 chrXIII:222642-224418 1.0000 100 chrXI:163311-164525 1.0000 100 chrIV:1016965-1017495 1.0000 100 chrXII:83410-83585 1.0000 100 chrXV:167879-168463 1.0000 100 chrXII:687652-688160 1.0000 100 chrVII:344158-345211 1.0000 100 chrI:138909-139359 1.0000 100 chrVIII:388660-389204 1.0000 100 chrXII:731910-732336 1.0000 100 chrV:77526-79479 1.0000 100 chrVII:255166-255623 1.0000 100 chrV:303788-306936 1.0000 100 chrXIII:861172-861475 1.0000 100 chrVIII:74647-76527 1.0000 100 chrXV:159261-160795 1.0000 100 chrXII:903371-904465 1.0000 100 chrV:250109-250516 1.0000 100 chrXII:522148-523596 1.0000 100 chrXIV:374683-375123 1.0000 100 chrIV:946136-946642 1.0000 100 chrXI:645282-645842 1.0000 100 chrXV:407629-408244 1.0000 100 chrIV:434003-434553 1.0000 100 chrX:120308-120408 1.0000 100 chrV:66742-69487 1.0000 100 chrXII:673110-674590 1.0000 100 chrXV:391513-392641 1.0000 100 chrXIII:407934-408874 1.0000 100 chrVII:786947-788775 1.0000 100 chrXI:83981-84433 1.0000 100 chrXIII:504659-505221 1.0000 100 chrIX:300047-300488 1.0000 100 chrV:176857-177444 1.0000 100 chrIII:142104-142982 1.0000 100 chrXII:468758-468996 1.0000 100 chrXV:619174-624662 1.0000 100 chrXII:636474-640250 1.0000 100 chrXI:490772-491275 1.0000 100 chrVIII:147591-149329 1.0000 100 chrXI:322381-322919 1.0000 100 chrIV:721011-722931 1.0000 100 chrX:355146-355246 1.0000 100 chrX:378157-378257 1.0000 100 chrII:59816-61275 1.0000 100 chrII:301012-301746 1.0000 100 chrVII:291675-291971 1.0000 100 chrVIII:381433-383363 1.0000 100 chrXIV:173527-174697 1.0000 100 chrI:2-1346 1.0000 100 chrXI:379434-379932 1.0000 100 chrXV:79563-80170 1.0000 100 chrVIII:562253-562584 1.0000 100 chrXII:47494-49150 1.0000 100 chrXIII:540145-541027 1.0000 100 chrV:406616-409466 1.0000 100 chrXI:665522-666805 1.0000 100 chrXVI:406168-407789 1.0000 100 chrXII:280828-283906 1.0000 100 chrIX:257327-258156 1.0000 100 chrIII:315628-316619 1.0000 100 chrXIII:320971-321330 1.0000 100 chrV:311506-312302 1.0000 100 chrXIV:493719-495750 1.0000 100 chrX:73367-73467 1.0000 100 chrXI:260492-260917 1.0000 100 chrXVI:575819-576674 1.0000 100 chrXV:444589-446181 1.0000 100 chrI:141620-143693 1.0000 100 chrVII:440463-443129 1.0000 100 chrX:606257-606357 1.0000 100 chrIII:66759-68650 1.0000 100 chrXIV:229617-231114 1.0000 100 chrIV:1256879-1257291 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.291 C 0.209 G 0.209 T 0.291 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CUP9/background): A 0.307 C 0.193 G 0.193 T 0.307 ******************************************************************************** ******************************************************************************** MOTIF SGGRATCGAACCSVKGAYCTY MEME-1 width = 21 sites = 133 llr = 2099 E-value = 7.4e-415 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGGRATCGAACCSVKGAYCTY MEME-1 Description -------------------------------------------------------------------------------- Simplified A 12:64:::aa::13:36:::1 pos.-specific C 4:::2:7:::a8532:15734 probability G 57a42::a::::34571121: matrix T ::::2a3::::12:3:24164 bits 2.4 * * 2.1 * * * 1.9 * * * 1.7 * * **** Relative 1.4 * ****** Entropy 1.2 ** ******* * (22.8 bits) 0.9 *** ******* * * 0.7 **** ******* * ** 0.5 **** *********** **** 0.2 **** **************** 0.0 --------------------- Multilevel GGGAATCGAACCCGGGACCTC consensus C G T GCTA T CT sequence AC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRATCGAACCSVKGAYCTY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXV:854001-854461 + 16 6.99e-11 TGGACGCAAC CGGAATCGAACCGATGACCTC TTCCTTGCAA chrI:166050-166654 - 7 6.99e-11 TGGACGCAAC CGGAATCGAACCGATGACCTC TTCCTT chrXII:214647-215159 + 40 6.99e-11 TGGACGCAAC CGGAATCGAACCGATGACCTC TTCCTTGCAA chrXIV:602109-602564 - 69 1.26e-10 TGGTCTCTAG CGGGATCGAACCGCTGATCCC CGCGTTATTA chrIV:667790-668257 + 44 1.26e-10 TGGTCTCTAG CGGGATCGAACCGCTGATCCC CGCGTTATTA chrVII:738848-739574 - 4 1.26e-10 TGGTCTCTAG CGGGATCGAACCGCTGATCCC CGC chrV:551007-551564 + 60 1.26e-10 TGGTCTCTAG CGGGATCGAACCGCTGATCCC CGCGTTATTA chrIX:210503-210956 - 29 1.26e-10 TGGTCTCTAG CGGGATCGAACCGCTGATCCC CGCGTTATTA chrII:197255-197877 - 21 1.26e-10 TGGTCTCTAG CGGGATCGAACCGCTGATCCC CGCGTTATTA chrXIV:569627-570160 + 34 1.26e-10 TGGTCTCTAG CGGGATCGAACCGCTGATCCC CGCGTTATTA chrIX:300047-300488 + 21 2.64e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrIV:1201537-1202098 - 25 2.64e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrVII:185506-185980 + 31 2.64e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrX:414783-414883 - 26 2.64e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrXVI:581770-582396 - 71 2.64e-10 GCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrVI:226528-226942 + 13 2.64e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrIV:1352165-1352738 + 75 2.64e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGAT chrVII:876191-876746 - 18 2.64e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrXIII:480393-480886 + 42 2.64e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrV:135167-135696 + 54 2.64e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrXI:202830-203307 - 23 2.64e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrVII:122021-122674 - 14 2.64e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrVIII:388660-389204 + 21 4.40e-10 GGGGCGAGCT GGGAATTGAACCCAGGGCCTC TCGCATGCTT chrXIV:546947-547419 - 33 4.40e-10 GGGGCGAGCT GGGAATTGAACCCAGGGCCTC TCGCATGCTT chrXV:980478-981033 - 52 4.40e-10 GGGGCGAGCT GGGAATTGAACCCAGGGCCTC TCGCATGCTT chrXV:300856-301446 - 67 4.40e-10 GGGGCGAGCT GGGAATTGAACCCAGGGCCTC TCGCATGCTT chrXIV:567870-568468 - 68 4.40e-10 GGGGCGAGCT GGGAATTGAACCCAGGGCCTC TCGCATGCTT chrXIII:320971-321330 + 57 7.16e-10 TGGACGAGTC CGGAATCGAACCGGAGACCTC TCCCATGCTA chrXVI:856755-857154 - 40 7.16e-10 TGGACGAGTC CGGAATCGAACCGGAGACCTC TCCCATGCTA chrXIII:768156-768635 + 34 7.16e-10 TGGACGAGTC CGGAATCGAACCGGAGACCTC TCCCATGCTA chrXII:656707-657200 + 41 7.16e-10 TGGACGAGTC CGGAATCGAACCGGAGACCTC TCCCATGCTA chrV:176857-177444 - 40 8.39e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrIV:1016965-1017495 + 37 8.39e-10 CTCCGAAGCG GGGAGTCGAACCCCGGTCTCC ACGGTGAGAA chrXV:281943-282524 - 21 8.39e-10 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrX:396525-396625 + 31 8.39e-10 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrVII:930745-931222 + 30 8.39e-10 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrXIII:290601-291142 - 21 8.39e-10 CTCCGCTACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrII:644974-645420 - 61 8.39e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrVII:541613-542177 - 46 8.39e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrVII:845431-845959 - 44 8.39e-10 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrIV:992597-993205 - 21 8.39e-10 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrX:115710-115810 + 42 8.39e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrIV:83307-83818 - 76 8.39e-10 AGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrXVI:860182-860682 - 37 8.39e-10 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrXVI:572058-572580 - 40 8.39e-10 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrV:487074-487603 + 53 8.39e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrVI:162031-162483 - 61 8.39e-10 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrVIII:475500-475907 + 63 1.54e-09 TGTTCCAACC GAGGATCGAACTCGGGACCTT TGCCGTGTGA chrX:355146-355246 - 18 2.05e-09 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGATTAGAA chrVII:405286-405787 - 25 2.05e-09 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGATTAGAA chrVII:736183-736658 - 11 2.05e-09 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGATTAGAA chrII:405667-406253 - 9 2.05e-09 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGATTAG chrXIII:747696-748143 + 33 2.05e-09 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGATTAGAA chrX:374195-374295 + 54 2.05e-09 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGATTAGAA chrV:250109-250516 - 65 2.71e-09 AGGTCCTACC CGGATTCGAACCGGGGTTGTC CGGATCAAAA chrIV:644937-645407 + 41 2.71e-09 AGGTCCTACC CGGATTCGAACCGGGGTTGTC CGGATCAAAA chrVIII:134074-134603 - 74 2.71e-09 CCTACC CGGATTCGAACCGGGGTTGTC CGGATCAAAA chrIV:802549-803015 + 9 2.71e-09 GTCCTACC CGGATTCGAACCGGGGTTGTC CGGATCAAAA chrX:538360-538460 - 54 3.12e-09 CGTTCCGTAC GGGACTCGAACCCGCAGTCTT CTCCTTAGGA chrVII:115277-115779 - 75 3.57e-09 CATAG GGGGCTCGAACCCCTGACATT TCGGTATCCT chrXII:875188-875668 - 63 3.57e-09 CTCCTCATAG GGGGCTCGAACCCCTGACATT TCGGTATCCT chrXI:578757-579346 - 29 3.57e-09 CTCCTCATAG GGGGCTCGAACCCCTGACATT TCGGTATCCT chrV:130850-131392 + 21 4.66e-09 AGGTCTTACC CGGATTCGAACCGGGGTTGTT CGGATCAAAA chrIV:434003-434553 + 46 6.03e-09 TGCTTCCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrXV:113576-114183 - 15 6.03e-09 TGCTTCCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrXIV:104617-105107 - 35 6.03e-09 TGCTTCCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrIX:174824-175411 - 6 6.03e-09 TGCTTCCAAT CGGATTTGAACCGATGATCTC CACAT chrIX:325537-326098 - 23 6.03e-09 TGCTTCCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrXII:687652-688160 + 13 1.60e-08 TGATTTCGCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrXIII:372208-372731 + 36 1.60e-08 TGATTTCGCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrXI:307918-308434 + 28 1.60e-08 TGATTTCGCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrV:438480-438990 - 58 1.60e-08 TGATTTCGCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrVII:412099-412587 + 11 1.60e-08 TGATTTCGCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrXIV:374683-375123 - 76 3.48e-08 CTCT GTGGATCGAACACAGGACCTC CAGATGACTT chrXVI:559983-560491 + 21 3.48e-08 TGCGAATTCT GTGGATCGAACACAGGACCTC CAGATAACTT chrVIII:358271-358762 + 22 3.48e-08 TGCGAATTCT GTGGATCGAACACAGGACCTC CAGATAACTT chrXVI:622340-622844 + 8 3.48e-08 GAATTCT GTGGATCGAACACAGGACCTC CAGATAACTT chrXIII:352071-352602 - 54 3.48e-08 TGCGAATTCT GTGGATCGAACACAGGACCTC CAGATAACTT chrIV:1095145-1095671 + 22 3.48e-08 TGCGAACTCT GTGGATCGAACACAGGACCTC CAGATATCTT chrIV:946136-946642 - 31 4.76e-08 TCTCCCGGGG GCGAGTCGAACGCCCGATCTC AAGATTTCGT chrVI:210464-210889 + 3 4.76e-08 GG GCGAGTCGAACGCCCGATCTC AAGATTTCGT chrXIII:168619-169060 - 64 4.76e-08 TCTCCCGGGG GCGAGTCGAACGCCCGATCTC AAGATTTCGT chrXIII:379009-379626 + 46 4.76e-08 TGAAACGGAC AGGAATTGAACCTGCAACCCT TCGATTGCAA chrVI:167250-167681 - 80 4.76e-08 . GCGAGTCGAACGCCCGATCTC AAGATTTCGT chrXV:288007-288497 - 48 4.76e-08 TCTCCCGGGG GCGAGTCGAACGCCCGATCTC AAGATTTCGT chrXIII:808001-808544 + 34 4.76e-08 AGGTCCCACC CGGATTCGAACTGGGGTTGTT CGGATCAGAA chrXIII:837732-838224 - 58 4.76e-08 TCTCCCGGGG GCGAGTCGAACGCCCGATCTC AAGATTTCGT chrXVI:55855-56505 + 49 4.76e-08 TGAAACGGAC AGGAATTGAACCTGCAACCCT TCGATTGCAA chrXI:302698-303229 - 80 4.76e-08 . AGGAATTGAACCTGCAACCCT TCGATTGCAA chrVII:287117-287640 + 32 4.76e-08 TGAAACGGAC AGGAATTGAACCTGCAACCCT TCGATTGCAA chrXI:490772-491275 - 37 5.27e-08 CTTCCCCGCC AGGACTTGAACCTGGAATCTT CTGGTTCGTA chrXV:340081-340591 + 23 5.27e-08 CTTCCCCGCC AGGACTTGAACCTGGAATCTT CTGGTTCGTA chrXII:374199-374650 - 23 5.27e-08 CTTCCCCGCC AGGACTTGAACCTGGAATCTT CTGGTTCGTA chrV:492202-492581 + 21 5.27e-08 CTTCCCCGCC AGGACTTGAACCTGGAATCTT CTGGTTCGTA chrIV:619668-620248 + 71 5.27e-08 CTTCCCCGCC AGGACTTGAACCTGGAATCTT CTGGTTCGT chrXI:74396-74935 - 52 1.05e-07 CGACCCCAGT GAGGGTTGAACTCACGATCTT GCGATTAACA chrXIV:102479-102994 - 73 1.05e-07 CCCCAGT GAGGGTTGAACTCACGATCTT GCGATTAACA chrXV:228109-228586 - 77 1.05e-07 AGT GAGGGTTGAACTCACGATCTT GCGATTAACA chrXIV:632385-632893 - 53 1.05e-07 CGACCCCAGT GAGGGTTGAACTCACGATCTT GCGATTAACA chrVII:730960-731400 - 50 1.05e-07 CGACCCCAGT GAGGGTTGAACTCACGATCTT GCGATTAACA chrVI:137254-137829 + 5 1.05e-07 CAGT GAGGGTTGAACTCACGATCTT GCGATTAACA chrXV:487239-487737 - 44 1.05e-07 CGACCCCAGT GAGGGTTGAACTCACGATCTT GCGATTAACA chrX:541325-541425 - 12 2.36e-07 CTCCGCGACG GGGAATTGAACCCCGATCTGG CACGCGACAA chrX:204518-204618 - 67 2.36e-07 CTCCGCGACG GGGAATTGAACCCCGATCTGG CACGCGACAA chrIX:336100-336634 + 42 2.36e-07 CTCCGCGACG GGGAATTGAACCCCGATCTGG CACGCGACAA chrIV:568700-569320 - 45 2.36e-07 CTCCGCGACG GGGAATTGAACCCCGATCTGG CACGCGACAA chrXIII:463324-463895 - 36 2.36e-07 CTCCGCGACG GGGAATTGAACCCCGATCTGG CACGCGACAA chrXII:426911-427441 - 47 2.36e-07 CTCCGCGACG GGGAATTGAACCCCGATCTGG CACGCGACAA chrX:422711-422811 - 34 2.79e-07 TGCTCCAGGG GAGGTTCGAACTCTCGACCTT CAGATTATGA chrXIII:572702-573147 + 19 2.79e-07 TGCTCCAGGG GAGGTTCGAACTCTCGACCTT CAGATTATGA chrVII:561405-561946 + 47 4.56e-07 CGACAACTGC AGGACTCGAACCTGCGCGGGC AAAGCCCAAA chrVIII:132798-133366 + 4 4.56e-07 TGC AGGACTCGAACCTGCGCGGGC AAAGCCCAAA chrI:182382-182779 + 2 4.56e-07 C AGGACTCGAACCTGCGCGGGC AAAGCCCAAA chrXIII:258962-259451 + 12 4.56e-07 CGACAACTGC AGGACTCGAACCTGCGCGGGC AAAGCCCAAA chrIV:980761-981264 + 22 4.56e-07 CGACAACTGC AGGACTCGAACCTGCGCGGGC AAAGCCCAAA chrII:347404-347896 + 63 1.11e-06 GTTGTCCGCG CGAGTTCGAACCTCGCATCCT TCAGTAATAT chrII:9364-9891 + 66 1.11e-06 GTTGTCCGCG CGAGTTCGAACCTCGCATCCT TCAGTATTTT chrXIV:725960-726412 - 1 1.11e-06 GTTGTCCGCG CGAGTTCGAACCTCGCATCCT chrII:642845-643282 + 4 1.90e-06 ACT CAGGATCGAACTAAGGACCAA CAGATTTGCA chrVII:706906-707357 + 37 1.90e-06 AGCTCGCACT CAGGATCGAACTAAGGACCAA CAGATTTGCA chrIV:488431-489114 - 78 2.03e-06 CC CGAGTTCGAACCTCGGTTGGA TCAGAATCTT chrV:288228-288746 + 16 2.45e-06 CGACACCAGC AGGATTTGAACCAGCGCGGGC AGAGCCCAAC chrXVI:689361-689884 - 44 2.45e-06 CGACACCAGC AGGATTTGAACCAGCGCGGGC AGAGCCCAAC chrIII:227763-228236 - 63 2.45e-06 CGACACCAGC AGGATTTGAACCAGCGCGGGC AGAGCCCAAG chrXI:313169-313673 + 40 2.61e-06 TGCCATCTCC TAGAATCGAACCAGGGTTTCA TCGGCCACAA chrV:207115-207665 - 58 2.61e-06 TGCCATCTCC TAGAATCGAACCAGGGTTTCA TCGGCCACAA chrVII:319590-320139 - 8 2.61e-06 TGCCATCTCC TAGAATCGAACCAGGGTTTCA TCGGCCA chrV:434377-434766 + 30 2.61e-06 TGCCATCTCC TAGAATCGAACCAGGGTTTCA TCGGCCACAA chrVII:110425-110943 + 1 2.61e-06 . TAGAATCGAACCAGGGTTTCA TCGGCCACAA chrVI:191314-191802 + 15 2.77e-06 CGTCACAGAC AGGATTCGAACCTGCGCAGGT AAAACCCAAT chrXV:274451-274998 - 69 2.77e-06 CGTCACAGAC AGGATTCGAACCTGCGCAGGT AAAACCCAAT chrX:517645-517745 + 3 3.32e-06 CT CGGTTTCGATCCGAGGACATC AGGGTTATGA chrXVI:338670-339138 + 4 3.32e-06 GCT CGGTTTCGATCCGAGGACATC AGGGTTATGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRATCGAACCSVKGAYCTY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:854001-854461 7e-11 15_[+1]_64 chrI:166050-166654 7e-11 6_[-1]_73 chrXII:214647-215159 7e-11 39_[+1]_40 chrXIV:602109-602564 1.3e-10 68_[-1]_11 chrIV:667790-668257 1.3e-10 43_[+1]_36 chrVII:738848-739574 1.3e-10 3_[-1]_76 chrV:551007-551564 1.3e-10 59_[+1]_20 chrIX:210503-210956 1.3e-10 28_[-1]_51 chrII:197255-197877 1.3e-10 20_[-1]_59 chrXIV:569627-570160 1.3e-10 33_[+1]_46 chrIX:300047-300488 2.6e-10 20_[+1]_59 chrIV:1201537-1202098 2.6e-10 24_[-1]_55 chrVII:185506-185980 2.6e-10 30_[+1]_49 chrX:414783-414883 2.6e-10 25_[-1]_54 chrXVI:581770-582396 2.6e-10 70_[-1]_9 chrVI:226528-226942 2.6e-10 12_[+1]_67 chrIV:1352165-1352738 2.6e-10 74_[+1]_5 chrVII:876191-876746 2.6e-10 17_[-1]_62 chrXIII:480393-480886 2.6e-10 41_[+1]_38 chrV:135167-135696 2.6e-10 53_[+1]_26 chrXI:202830-203307 2.6e-10 22_[-1]_57 chrVII:122021-122674 2.6e-10 13_[-1]_66 chrVIII:388660-389204 4.4e-10 20_[+1]_59 chrXIV:546947-547419 4.4e-10 32_[-1]_47 chrXV:980478-981033 4.4e-10 51_[-1]_28 chrXV:300856-301446 4.4e-10 66_[-1]_13 chrXIV:567870-568468 4.4e-10 67_[-1]_12 chrXIII:320971-321330 7.2e-10 56_[+1]_23 chrXVI:856755-857154 7.2e-10 39_[-1]_40 chrXIII:768156-768635 7.2e-10 33_[+1]_46 chrXII:656707-657200 7.2e-10 40_[+1]_39 chrV:176857-177444 8.4e-10 39_[-1]_40 chrIV:1016965-1017495 8.4e-10 36_[+1]_43 chrXV:281943-282524 8.4e-10 20_[-1]_59 chrX:396525-396625 8.4e-10 30_[+1]_49 chrVII:930745-931222 8.4e-10 29_[+1]_50 chrXIII:290601-291142 8.4e-10 20_[-1]_59 chrII:644974-645420 8.4e-10 60_[-1]_19 chrVII:541613-542177 8.4e-10 45_[-1]_34 chrVII:845431-845959 8.4e-10 43_[-1]_36 chrIV:992597-993205 8.4e-10 20_[-1]_59 chrX:115710-115810 8.4e-10 41_[+1]_38 chrIV:83307-83818 8.4e-10 75_[-1]_4 chrXVI:860182-860682 8.4e-10 36_[-1]_43 chrXVI:572058-572580 8.4e-10 39_[-1]_40 chrV:487074-487603 8.4e-10 52_[+1]_27 chrVI:162031-162483 8.4e-10 60_[-1]_19 chrVIII:475500-475907 1.5e-09 62_[+1]_17 chrX:355146-355246 2.1e-09 17_[-1]_62 chrVII:405286-405787 2.1e-09 24_[-1]_55 chrVII:736183-736658 2.1e-09 10_[-1]_69 chrII:405667-406253 2.1e-09 8_[-1]_71 chrXIII:747696-748143 2.1e-09 32_[+1]_47 chrX:374195-374295 2.1e-09 53_[+1]_26 chrV:250109-250516 2.7e-09 64_[-1]_15 chrIV:644937-645407 2.7e-09 40_[+1]_39 chrVIII:134074-134603 2.7e-09 73_[-1]_6 chrIV:802549-803015 2.7e-09 8_[+1]_71 chrX:538360-538460 3.1e-09 53_[-1]_26 chrVII:115277-115779 3.6e-09 74_[-1]_5 chrXII:875188-875668 3.6e-09 62_[-1]_17 chrXI:578757-579346 3.6e-09 28_[-1]_51 chrV:130850-131392 4.7e-09 20_[+1]_59 chrIV:434003-434553 6e-09 45_[+1]_34 chrXV:113576-114183 6e-09 14_[-1]_65 chrXIV:104617-105107 6e-09 34_[-1]_45 chrIX:174824-175411 6e-09 5_[-1]_74 chrIX:325537-326098 6e-09 22_[-1]_57 chrXII:687652-688160 1.6e-08 12_[+1]_67 chrXIII:372208-372731 1.6e-08 35_[+1]_44 chrXI:307918-308434 1.6e-08 27_[+1]_52 chrV:438480-438990 1.6e-08 57_[-1]_22 chrVII:412099-412587 1.6e-08 10_[+1]_69 chrXIV:374683-375123 3.5e-08 75_[-1]_4 chrXVI:559983-560491 3.5e-08 20_[+1]_59 chrVIII:358271-358762 3.5e-08 21_[+1]_58 chrXVI:622340-622844 3.5e-08 7_[+1]_72 chrXIII:352071-352602 3.5e-08 53_[-1]_26 chrIV:1095145-1095671 3.5e-08 21_[+1]_58 chrIV:946136-946642 4.8e-08 30_[-1]_49 chrVI:210464-210889 4.8e-08 2_[+1]_77 chrXIII:168619-169060 4.8e-08 63_[-1]_16 chrXIII:379009-379626 4.8e-08 45_[+1]_34 chrVI:167250-167681 4.8e-08 79_[-1] chrXV:288007-288497 4.8e-08 47_[-1]_32 chrXIII:808001-808544 4.8e-08 33_[+1]_46 chrXIII:837732-838224 4.8e-08 57_[-1]_22 chrXVI:55855-56505 4.8e-08 48_[+1]_31 chrXI:302698-303229 4.8e-08 79_[-1] chrVII:287117-287640 4.8e-08 31_[+1]_48 chrXI:490772-491275 5.3e-08 36_[-1]_43 chrXV:340081-340591 5.3e-08 22_[+1]_57 chrXII:374199-374650 5.3e-08 22_[-1]_57 chrV:492202-492581 5.3e-08 20_[+1]_59 chrIV:619668-620248 5.3e-08 70_[+1]_9 chrXI:74396-74935 1e-07 51_[-1]_28 chrXIV:102479-102994 1e-07 72_[-1]_7 chrXV:228109-228586 1e-07 76_[-1]_3 chrXIV:632385-632893 1e-07 52_[-1]_27 chrVII:730960-731400 1e-07 49_[-1]_30 chrVI:137254-137829 1e-07 4_[+1]_75 chrXV:487239-487737 1e-07 43_[-1]_36 chrX:541325-541425 2.4e-07 11_[-1]_68 chrX:204518-204618 2.4e-07 66_[-1]_13 chrIX:336100-336634 2.4e-07 41_[+1]_38 chrIV:568700-569320 2.4e-07 44_[-1]_35 chrXIII:463324-463895 2.4e-07 35_[-1]_44 chrXII:426911-427441 2.4e-07 46_[-1]_33 chrX:422711-422811 2.8e-07 33_[-1]_46 chrXIII:572702-573147 2.8e-07 18_[+1]_61 chrVII:561405-561946 4.6e-07 46_[+1]_33 chrVIII:132798-133366 4.6e-07 3_[+1]_76 chrI:182382-182779 4.6e-07 1_[+1]_78 chrXIII:258962-259451 4.6e-07 11_[+1]_68 chrIV:980761-981264 4.6e-07 21_[+1]_58 chrII:347404-347896 1.1e-06 62_[+1]_17 chrII:9364-9891 1.1e-06 65_[+1]_14 chrXIV:725960-726412 1.1e-06 [-1]_79 chrII:642845-643282 1.9e-06 3_[+1]_76 chrVII:706906-707357 1.9e-06 36_[+1]_43 chrIV:488431-489114 2e-06 77_[-1]_2 chrV:288228-288746 2.5e-06 15_[+1]_64 chrXVI:689361-689884 2.5e-06 43_[-1]_36 chrIII:227763-228236 2.5e-06 62_[-1]_17 chrXI:313169-313673 2.6e-06 39_[+1]_40 chrV:207115-207665 2.6e-06 57_[-1]_22 chrVII:319590-320139 2.6e-06 7_[-1]_72 chrV:434377-434766 2.6e-06 29_[+1]_50 chrVII:110425-110943 2.6e-06 [+1]_79 chrVI:191314-191802 2.8e-06 14_[+1]_65 chrXV:274451-274998 2.8e-06 68_[-1]_11 chrX:517645-517745 3.3e-06 2_[+1]_77 chrXVI:338670-339138 3.3e-06 3_[+1]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRATCGAACCSVKGAYCTY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGGRATCGAACCSVKGAYCTY width=21 seqs=133 chrXV:854001-854461 ( 16) CGGAATCGAACCGATGACCTC 1 chrI:166050-166654 ( 7) CGGAATCGAACCGATGACCTC 1 chrXII:214647-215159 ( 40) CGGAATCGAACCGATGACCTC 1 chrXIV:602109-602564 ( 69) CGGGATCGAACCGCTGATCCC 1 chrIV:667790-668257 ( 44) CGGGATCGAACCGCTGATCCC 1 chrVII:738848-739574 ( 4) CGGGATCGAACCGCTGATCCC 1 chrV:551007-551564 ( 60) CGGGATCGAACCGCTGATCCC 1 chrIX:210503-210956 ( 29) CGGGATCGAACCGCTGATCCC 1 chrII:197255-197877 ( 21) CGGGATCGAACCGCTGATCCC 1 chrXIV:569627-570160 ( 34) CGGGATCGAACCGCTGATCCC 1 chrIX:300047-300488 ( 21) GGGGCTCGAACCCCTAACCTT 1 chrIV:1201537-1202098 ( 25) GGGGCTCGAACCCCTAACCTT 1 chrVII:185506-185980 ( 31) GGGGCTCGAACCCCTAACCTT 1 chrX:414783-414883 ( 26) GGGGCTCGAACCCCTAACCTT 1 chrXVI:581770-582396 ( 71) GGGGCTCGAACCCCTAACCTT 1 chrVI:226528-226942 ( 13) GGGGCTCGAACCCCTAACCTT 1 chrIV:1352165-1352738 ( 75) GGGGCTCGAACCCCTAACCTT 1 chrVII:876191-876746 ( 18) GGGGCTCGAACCCCTAACCTT 1 chrXIII:480393-480886 ( 42) GGGGCTCGAACCCCTAACCTT 1 chrV:135167-135696 ( 54) GGGGCTCGAACCCCTAACCTT 1 chrXI:202830-203307 ( 23) GGGGCTCGAACCCCTAACCTT 1 chrVII:122021-122674 ( 14) GGGGCTCGAACCCCTAACCTT 1 chrVIII:388660-389204 ( 21) GGGAATTGAACCCAGGGCCTC 1 chrXIV:546947-547419 ( 33) GGGAATTGAACCCAGGGCCTC 1 chrXV:980478-981033 ( 52) GGGAATTGAACCCAGGGCCTC 1 chrXV:300856-301446 ( 67) GGGAATTGAACCCAGGGCCTC 1 chrXIV:567870-568468 ( 68) GGGAATTGAACCCAGGGCCTC 1 chrXIII:320971-321330 ( 57) CGGAATCGAACCGGAGACCTC 1 chrXVI:856755-857154 ( 40) CGGAATCGAACCGGAGACCTC 1 chrXIII:768156-768635 ( 34) CGGAATCGAACCGGAGACCTC 1 chrXII:656707-657200 ( 41) CGGAATCGAACCGGAGACCTC 1 chrV:176857-177444 ( 40) GGGAGTCGAACCCCGGTCTCC 1 chrIV:1016965-1017495 ( 37) GGGAGTCGAACCCCGGTCTCC 1 chrXV:281943-282524 ( 21) CGGAATCGAACCGGGGGCCCA 1 chrX:396525-396625 ( 31) CGGAATCGAACCGGGGGCCCA 1 chrVII:930745-931222 ( 30) CGGAATCGAACCGGGGGCCCA 1 chrXIII:290601-291142 ( 21) GGGAGTCGAACCCCGGTCTCC 1 chrII:644974-645420 ( 61) GGGAGTCGAACCCCGGTCTCC 1 chrVII:541613-542177 ( 46) GGGAGTCGAACCCCGGTCTCC 1 chrVII:845431-845959 ( 44) CGGAATCGAACCGGGGGCCCA 1 chrIV:992597-993205 ( 21) CGGAATCGAACCGGGGGCCCA 1 chrX:115710-115810 ( 42) GGGAGTCGAACCCCGGTCTCC 1 chrIV:83307-83818 ( 76) CGGAATCGAACCGGGGGCCCA 1 chrXVI:860182-860682 ( 37) CGGAATCGAACCGGGGGCCCA 1 chrXVI:572058-572580 ( 40) CGGAATCGAACCGGGGGCCCA 1 chrV:487074-487603 ( 53) GGGAGTCGAACCCCGGTCTCC 1 chrVI:162031-162483 ( 61) CGGAATCGAACCGGGGGCCCA 1 chrVIII:475500-475907 ( 63) GAGGATCGAACTCGGGACCTT 1 chrX:355146-355246 ( 18) GGGGGTCGAACCCATAATCTT 1 chrVII:405286-405787 ( 25) GGGGGTCGAACCCATAATCTT 1 chrVII:736183-736658 ( 11) GGGGGTCGAACCCATAATCTT 1 chrII:405667-406253 ( 9) GGGGGTCGAACCCATAATCTT 1 chrXIII:747696-748143 ( 33) GGGGGTCGAACCCATAATCTT 1 chrX:374195-374295 ( 54) GGGGGTCGAACCCATAATCTT 1 chrV:250109-250516 ( 65) CGGATTCGAACCGGGGTTGTC 1 chrIV:644937-645407 ( 41) CGGATTCGAACCGGGGTTGTC 1 chrVIII:134074-134603 ( 74) CGGATTCGAACCGGGGTTGTC 1 chrIV:802549-803015 ( 9) CGGATTCGAACCGGGGTTGTC 1 chrX:538360-538460 ( 54) GGGACTCGAACCCGCAGTCTT 1 chrVII:115277-115779 ( 75) GGGGCTCGAACCCCTGACATT 1 chrXII:875188-875668 ( 63) GGGGCTCGAACCCCTGACATT 1 chrXI:578757-579346 ( 29) GGGGCTCGAACCCCTGACATT 1 chrV:130850-131392 ( 21) CGGATTCGAACCGGGGTTGTT 1 chrIV:434003-434553 ( 46) CGGATTTGAACCGATGATCTC 1 chrXV:113576-114183 ( 15) CGGATTTGAACCGATGATCTC 1 chrXIV:104617-105107 ( 35) CGGATTTGAACCGATGATCTC 1 chrIX:174824-175411 ( 6) CGGATTTGAACCGATGATCTC 1 chrIX:325537-326098 ( 23) CGGATTTGAACCGATGATCTC 1 chrXII:687652-688160 ( 13) CAGGATCGAACTGGGGACGTT 1 chrXIII:372208-372731 ( 36) CAGGATCGAACTGGGGACGTT 1 chrXI:307918-308434 ( 28) CAGGATCGAACTGGGGACGTT 1 chrV:438480-438990 ( 58) CAGGATCGAACTGGGGACGTT 1 chrVII:412099-412587 ( 11) CAGGATCGAACTGGGGACGTT 1 chrXIV:374683-375123 ( 76) GTGGATCGAACACAGGACCTC 1 chrXVI:559983-560491 ( 21) GTGGATCGAACACAGGACCTC 1 chrVIII:358271-358762 ( 22) GTGGATCGAACACAGGACCTC 1 chrXVI:622340-622844 ( 8) GTGGATCGAACACAGGACCTC 1 chrXIII:352071-352602 ( 54) GTGGATCGAACACAGGACCTC 1 chrIV:1095145-1095671 ( 22) GTGGATCGAACACAGGACCTC 1 chrIV:946136-946642 ( 31) GCGAGTCGAACGCCCGATCTC 1 chrVI:210464-210889 ( 3) GCGAGTCGAACGCCCGATCTC 1 chrXIII:168619-169060 ( 64) GCGAGTCGAACGCCCGATCTC 1 chrXIII:379009-379626 ( 46) AGGAATTGAACCTGCAACCCT 1 chrVI:167250-167681 ( 80) GCGAGTCGAACGCCCGATCTC 1 chrXV:288007-288497 ( 48) GCGAGTCGAACGCCCGATCTC 1 chrXIII:808001-808544 ( 34) CGGATTCGAACTGGGGTTGTT 1 chrXIII:837732-838224 ( 58) GCGAGTCGAACGCCCGATCTC 1 chrXVI:55855-56505 ( 49) AGGAATTGAACCTGCAACCCT 1 chrXI:302698-303229 ( 80) AGGAATTGAACCTGCAACCCT 1 chrVII:287117-287640 ( 32) AGGAATTGAACCTGCAACCCT 1 chrXI:490772-491275 ( 37) AGGACTTGAACCTGGAATCTT 1 chrXV:340081-340591 ( 23) AGGACTTGAACCTGGAATCTT 1 chrXII:374199-374650 ( 23) AGGACTTGAACCTGGAATCTT 1 chrV:492202-492581 ( 21) AGGACTTGAACCTGGAATCTT 1 chrIV:619668-620248 ( 71) AGGACTTGAACCTGGAATCTT 1 chrXI:74396-74935 ( 52) GAGGGTTGAACTCACGATCTT 1 chrXIV:102479-102994 ( 73) GAGGGTTGAACTCACGATCTT 1 chrXV:228109-228586 ( 77) GAGGGTTGAACTCACGATCTT 1 chrXIV:632385-632893 ( 53) GAGGGTTGAACTCACGATCTT 1 chrVII:730960-731400 ( 50) GAGGGTTGAACTCACGATCTT 1 chrVI:137254-137829 ( 5) GAGGGTTGAACTCACGATCTT 1 chrXV:487239-487737 ( 44) GAGGGTTGAACTCACGATCTT 1 chrX:541325-541425 ( 12) GGGAATTGAACCCCGATCTGG 1 chrX:204518-204618 ( 67) GGGAATTGAACCCCGATCTGG 1 chrIX:336100-336634 ( 42) GGGAATTGAACCCCGATCTGG 1 chrIV:568700-569320 ( 45) GGGAATTGAACCCCGATCTGG 1 chrXIII:463324-463895 ( 36) GGGAATTGAACCCCGATCTGG 1 chrXII:426911-427441 ( 47) GGGAATTGAACCCCGATCTGG 1 chrX:422711-422811 ( 34) GAGGTTCGAACTCTCGACCTT 1 chrXIII:572702-573147 ( 19) GAGGTTCGAACTCTCGACCTT 1 chrVII:561405-561946 ( 47) AGGACTCGAACCTGCGCGGGC 1 chrVIII:132798-133366 ( 4) AGGACTCGAACCTGCGCGGGC 1 chrI:182382-182779 ( 2) AGGACTCGAACCTGCGCGGGC 1 chrXIII:258962-259451 ( 12) AGGACTCGAACCTGCGCGGGC 1 chrIV:980761-981264 ( 22) AGGACTCGAACCTGCGCGGGC 1 chrII:347404-347896 ( 63) CGAGTTCGAACCTCGCATCCT 1 chrII:9364-9891 ( 66) CGAGTTCGAACCTCGCATCCT 1 chrXIV:725960-726412 ( 1) CGAGTTCGAACCTCGCATCCT 1 chrII:642845-643282 ( 4) CAGGATCGAACTAAGGACCAA 1 chrVII:706906-707357 ( 37) CAGGATCGAACTAAGGACCAA 1 chrIV:488431-489114 ( 78) CGAGTTCGAACCTCGGTTGGA 1 chrV:288228-288746 ( 16) AGGATTTGAACCAGCGCGGGC 1 chrXVI:689361-689884 ( 44) AGGATTTGAACCAGCGCGGGC 1 chrIII:227763-228236 ( 63) AGGATTTGAACCAGCGCGGGC 1 chrXI:313169-313673 ( 40) TAGAATCGAACCAGGGTTTCA 1 chrV:207115-207665 ( 58) TAGAATCGAACCAGGGTTTCA 1 chrVII:319590-320139 ( 8) TAGAATCGAACCAGGGTTTCA 1 chrV:434377-434766 ( 30) TAGAATCGAACCAGGGTTTCA 1 chrVII:110425-110943 ( 1) TAGAATCGAACCAGGGTTTCA 1 chrVI:191314-191802 ( 15) AGGATTCGAACCTGCGCAGGT 1 chrXV:274451-274998 ( 69) AGGATTCGAACCTGCGCAGGT 1 chrX:517645-517745 ( 3) CGGTTTCGATCCGAGGACATC 1 chrXVI:338670-339138 ( 4) CGGTTTCGATCCGAGGACATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRATCGAACCSVKGAYCTY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 9.26671 E= 7.4e-415 -110 87 127 -303 -89 -210 195 -277 -335 -1370 233 -1370 90 -1370 110 -435 48 2 2 -77 -1370 -1370 -1370 170 -1370 193 -1370 -22 -1370 -1370 237 -1370 170 -1370 -1370 -1370 168 -1370 -1370 -435 -1370 237 -1370 -1370 -277 201 -210 -118 -203 127 68 -103 -18 81 96 -435 -335 23 130 -18 -27 -309 190 -1370 102 -136 -77 -71 -435 147 -168 35 -303 178 -22 -118 -435 45 -59 95 -126 115 -210 38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRATCGAACCSVKGAYCTY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 133 E= 7.4e-415 0.142857 0.353383 0.466165 0.037594 0.165414 0.045113 0.744361 0.045113 0.030075 0.000000 0.969925 0.000000 0.571429 0.000000 0.413534 0.015038 0.428571 0.195489 0.195489 0.180451 0.000000 0.000000 0.000000 1.000000 0.000000 0.736842 0.000000 0.263158 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.984962 0.000000 0.000000 0.015038 0.000000 1.000000 0.000000 0.000000 0.045113 0.774436 0.045113 0.135338 0.075188 0.466165 0.308271 0.150376 0.270677 0.338346 0.375940 0.015038 0.030075 0.225564 0.473684 0.270677 0.255639 0.022556 0.721805 0.000000 0.624060 0.075188 0.112782 0.187970 0.015038 0.533835 0.060150 0.390977 0.037594 0.661654 0.165414 0.135338 0.015038 0.263158 0.127820 0.593985 0.127820 0.428571 0.045113 0.398496 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRATCGAACCSVKGAYCTY MEME-1 regular expression -------------------------------------------------------------------------------- [GC]GG[AG]AT[CT]GAACC[CG][GCA][GTC][GA]A[CT]C[TC][CT] -------------------------------------------------------------------------------- Time 517.36 secs. ******************************************************************************** ******************************************************************************** MOTIF BDTGGYYYAGTKGKTWRAGSS MEME-2 width = 21 sites = 127 llr = 1828 E-value = 8.8e-316 ******************************************************************************** -------------------------------------------------------------------------------- Motif BDTGGYYYAGTKGKTWRAGSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 13:3:::1a2::::16563:: pos.-specific C 3::::653::11::2::2:54 probability G 34:7a:22:8:5a51:41635 matrix T 34a::434::93:56411121 bits 2.4 * 2.1 * * 1.9 * * 1.7 * * ** * Relative 1.4 * * *** * Entropy 1.2 **** *** * (20.8 bits) 0.9 **** *** ** ** 0.7 ***** ****** * *** 0.5 ****** ****** ** *** 0.2 ********************* 0.0 --------------------- Multilevel CGTGGCCTAGTGGTTAAAGCG consensus TT A TTC T GCTG AGC sequence GA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGYYYAGTKGKTWRAGSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXII:167761-168260 - 40 2.14e-10 CATATGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrV:443065-443505 - 15 2.14e-10 AATTTGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXII:734600-734995 + 60 2.14e-10 AGTTTGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXIV:602109-602564 + 31 2.14e-10 ACAATGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIX:183290-183719 - 34 2.14e-10 TTCCTGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrX:523870-523970 - 24 2.14e-10 TTAAAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXII:1051914-1052422 - 1 2.14e-10 TTCATGGTCT CTTGGCCCAGTTGGTTAAGGC chrVIII:132798-133366 - 50 2.14e-10 TAAGTGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrI:182382-182779 - 48 2.14e-10 ATTTTGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXIII:258962-259451 - 58 2.14e-10 AGTATGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXIV:569627-570160 - 72 2.14e-10 AGTGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIV:980761-981264 - 68 2.14e-10 ATTGAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXII:731910-732336 + 22 6.78e-10 ACAATGGGAG TTTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrX:617701-617801 + 35 6.78e-10 ACAATGGGAG TTTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXI:83981-84433 + 56 8.41e-10 TGTATGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrII:347404-347896 + 8 8.41e-10 ACGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrIV:519556-519962 + 39 8.41e-10 TTTACGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrII:9364-9891 + 11 8.41e-10 TTCGTGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXII:962793-963273 - 47 8.41e-10 TCGACGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrX:424274-424374 - 15 8.41e-10 AAGATGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXIV:725960-726412 - 56 8.41e-10 TCTTTGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrV:288228-288746 - 62 1.88e-09 TGATAGGCAC TATGGCCGAGTGGTTAAGGCG ACAGACTTGA chrVI:191314-191802 - 80 1.88e-09 . AGTGGCCGAGTGGTTAAGGCG ATGCCCTGCT chrXII:784078-784592 + 74 1.88e-09 CAACCGTCCC AGTGGCCGAGTGGTTAAGGCG ATGCCT chrXV:274451-274998 + 4 1.88e-09 CCC AGTGGCCGAGTGGTTAAGGCG ATGCCCTGCT chrIV:1150653-1151155 - 62 1.88e-09 TTTCAGTCCC AGTGGCCGAGTGGTTAAGGCG ATGCCTGCTA chrVII:794190-794599 + 78 2.27e-09 ATTGCGGGCA CATGGCGCAGTTGGTAGCGCG CT chrXV:854001-854461 - 53 2.27e-09 CATCAGGGCA CATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrXII:214647-215159 - 77 2.27e-09 GCA CATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrXI:74396-74935 + 14 3.92e-09 AATTAGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrIII:127501-127920 + 61 3.92e-09 AAAATGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXIV:102479-102994 + 35 3.92e-09 TATAAGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXV:228109-228586 + 39 3.92e-09 TATTAGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXIV:632385-632893 + 15 3.92e-09 AAAGTGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrVII:730960-731400 + 12 3.92e-09 AAAAAGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrVI:137254-137829 - 43 3.92e-09 TGACTGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXV:487239-487737 + 6 3.92e-09 GACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXVI:810443-810867 + 76 3.92e-09 TTTGCGACTC CATGGCCAAGTTGGTTAAGGC GTGC chrXVI:856755-857154 + 3 4.66e-09 CG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXIII:768156-768635 - 71 4.66e-09 AAATGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrIV:359346-359834 + 42 4.66e-09 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrVII:115277-115779 + 15 4.66e-09 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrVI:204775-205201 - 33 4.66e-09 CGTTCGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXII:656707-657200 - 78 4.66e-09 CG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXII:875188-875668 + 3 4.66e-09 TT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXI:219684-220123 + 47 4.66e-09 AAATAGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXI:379434-379932 + 52 1.66e-08 TAATAGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrX:378157-378257 + 51 1.66e-08 TAATAGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXII:687652-688160 - 51 1.66e-08 TAATAGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:372208-372731 - 74 1.66e-08 TGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXV:353883-354323 - 35 1.66e-08 TTACTGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrX:58928-59028 - 21 1.66e-08 TAGAAGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXIV:560524-561023 - 17 1.66e-08 AACGGGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXI:307918-308434 - 66 1.66e-08 TAAGTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrV:438480-438990 + 20 1.66e-08 AATTAGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:412099-412587 - 49 1.66e-08 AAACTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:823269-823719 + 43 1.66e-08 AGAGTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXII:605134-605625 - 78 3.34e-08 CG TGTAGCTCAGTGGTTAGAGCT TCGTGCTTAT chrXIV:374683-375123 + 21 3.81e-08 AATAAGCGGA CTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrIV:1095145-1095671 - 78 3.81e-08 GA CTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXIII:504659-505221 + 10 4.34e-08 AAGTGGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrVII:857240-857693 - 50 4.34e-08 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrIX:300047-300488 - 58 6.32e-08 AAATAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:185506-185980 - 68 6.32e-08 AAATAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrXVI:581770-582396 + 34 6.32e-08 AAAGAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVI:226528-226942 - 50 6.32e-08 AAAATGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrXIII:480393-480886 - 79 6.32e-08 T GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrV:435606-436019 - 37 6.32e-08 TAAGAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrXVI:559983-560491 - 77 9.02e-08 GGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVIII:358271-358762 - 78 9.02e-08 GA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrII:36150-36621 + 68 9.02e-08 TGTAAGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXVI:622340-622844 - 64 9.02e-08 GATATGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVI:157730-158247 - 44 9.02e-08 TAGAAGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXV:340081-340591 - 60 1.57e-07 ATCTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrV:492202-492581 - 58 1.57e-07 TCCTATTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrX:233685-233785 + 51 1.57e-07 TCTTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrX:396525-396625 - 66 3.16e-07 AGTAAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVII:930745-931222 - 65 3.16e-07 AGTAAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVII:845431-845959 + 9 3.16e-07 CAAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXV:226479-226897 - 18 3.16e-07 ATTCAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrIV:83307-83818 + 41 3.16e-07 ACTTAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXIII:183763-184182 - 21 3.16e-07 AGATCGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXVI:860182-860682 + 2 3.16e-07 A AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXVI:572058-572580 + 5 3.16e-07 CGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVI:162031-162483 + 26 3.16e-07 AACAAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrX:542770-542870 - 43 3.46e-07 AAATACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrVI:210464-210889 - 56 3.46e-07 AACGACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrXIII:168619-169060 + 11 3.46e-07 AGTCACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrVI:167250-167681 + 27 3.46e-07 AACGACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrXIII:837732-838224 + 5 3.46e-07 TCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrI:138909-139359 + 73 3.80e-07 AGTACGGGCG TGTGGTCTAGTGGTATGATTC TCGCTTT chrXIII:195907-196408 - 38 3.80e-07 CACAAGGGCG TGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrVI:101170-101589 + 52 3.80e-07 AATTCGGGCG TGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXV:300856-301446 + 1 3.80e-07 . TGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXIV:567870-568468 + 1 3.80e-07 . TGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXIII:923207-924381 - 28 6.38e-07 ATGCACGGCA CTTGCCTCAGTGGTCTATACC CTGTTCCATT chrIV:1256879-1257291 - 19 8.12e-07 TCTTAGCGAA AGTGGTTCAGTGGTTAGAATT CATGCTTCCC chrXV:594220-594663 - 9 8.12e-07 GAAACGCGCA AGTGGTTCAGTGGTTAGAATT TATGCTTC chrX:745164-745264 + 40 8.77e-07 GTAGGGTAAT GGTAGTGGAGTTGGATATGGG TAATTGGAGG chrXIII:572702-573147 - 56 1.56e-06 AGACAGCTTC AGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrXI:0-1096 + 56 1.91e-06 ATTCACGGCA CTTGCCTCAGCGGTTTATACC CTGTGCAATT chrX:355146-355246 + 64 2.45e-06 TTTCTTCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrVII:544392-544925 - 15 2.45e-06 TTTCTTCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrXI:513196-513603 - 29 2.45e-06 AACGTTCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrX:204518-204618 + 31 2.45e-06 AAAAATCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrXV:571724-572165 + 69 2.45e-06 TAAAATCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrII:405667-406253 + 55 2.45e-06 TTTCTTCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrVII:531419-531799 + 56 2.45e-06 TTACTTCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrIX:336100-336634 - 78 2.45e-06 GT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrX:374195-374295 - 8 2.45e-06 TTTCTTCCGT GATAGTTTAATGGTCAGAATG GGCGCTT chrIV:568700-569320 + 9 2.45e-06 TCTTCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrXII:426911-427441 + 11 2.45e-06 TCTTATCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrXI:665522-666805 - 24 2.60e-06 ATGCACGGCA CTTGCCTCAGCGGTCTATACC CTGTGCCATT chrIV:1524089-1525677 - 25 2.60e-06 ATACACGGCA CTTGCCTCAGCGGTCTATACC CTGTGCCATT chrI:229151-230195 - 23 2.60e-06 ATACACGGCA CTTGCCTCAGCGGTCTATACC CTGTCCCATT chrVI:4462-6139 + 27 2.60e-06 ATGCACGGCA CTTGCCTCAGCGGTCTATACC CTGTGCCATT chrVII:73654-74227 + 54 2.75e-06 ATACTTGCTT CATAGTTTAGTTGTAAAATTG AAGTTCAGTA chrXII:468758-468996 + 33 3.45e-06 TCCGATCAAC TGTAGTTAAGCTGGTAAGAGC CTGACCGAGT chrV:250109-250516 + 29 3.65e-06 GTACTGGTCC TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrIII:168117-168616 - 31 3.65e-06 GTCCTGGTCC TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrXII:448463-449011 - 9 3.65e-06 GTTCCGGTCC TATAGTGTAGTGGTTATCACT TTCGGTTT chrIV:644937-645407 - 77 3.65e-06 TCC TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrVIII:134074-134603 + 38 3.65e-06 GTTCCGGTCC TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrXIII:808001-808544 - 70 3.65e-06 AAAAAGGTCC TATAGTGTAGTGGTTATCACT TTCGGTTCTG chrV:130850-131392 - 57 3.65e-06 TAAGAGGTTT TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrIV:802549-803015 - 45 3.65e-06 TTGTCGGTCC TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrXIV:631688-632132 - 32 6.27e-06 CTACCGGGCG TGTGGTCTAGAGGTATGATTC TCGCTTAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGYYYAGTKGKTWRAGSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:167761-168260 2.1e-10 39_[-2]_40 chrV:443065-443505 2.1e-10 14_[-2]_65 chrXII:734600-734995 2.1e-10 59_[+2]_20 chrXIV:602109-602564 2.1e-10 30_[+2]_49 chrIX:183290-183719 2.1e-10 33_[-2]_46 chrX:523870-523970 2.1e-10 23_[-2]_56 chrXII:1051914-1052422 2.1e-10 [-2]_79 chrVIII:132798-133366 2.1e-10 49_[-2]_30 chrI:182382-182779 2.1e-10 47_[-2]_32 chrXIII:258962-259451 2.1e-10 57_[-2]_22 chrXIV:569627-570160 2.1e-10 71_[-2]_8 chrIV:980761-981264 2.1e-10 67_[-2]_12 chrXII:731910-732336 6.8e-10 21_[+2]_58 chrX:617701-617801 6.8e-10 34_[+2]_45 chrXI:83981-84433 8.4e-10 55_[+2]_24 chrII:347404-347896 8.4e-10 7_[+2]_72 chrIV:519556-519962 8.4e-10 38_[+2]_41 chrII:9364-9891 8.4e-10 10_[+2]_69 chrXII:962793-963273 8.4e-10 46_[-2]_33 chrX:424274-424374 8.4e-10 14_[-2]_65 chrXIV:725960-726412 8.4e-10 55_[-2]_24 chrV:288228-288746 1.9e-09 61_[-2]_18 chrVI:191314-191802 1.9e-09 79_[-2] chrXII:784078-784592 1.9e-09 73_[+2]_6 chrXV:274451-274998 1.9e-09 3_[+2]_76 chrIV:1150653-1151155 1.9e-09 61_[-2]_18 chrVII:794190-794599 2.3e-09 77_[+2]_2 chrXV:854001-854461 2.3e-09 52_[-2]_27 chrXII:214647-215159 2.3e-09 76_[-2]_3 chrXI:74396-74935 3.9e-09 13_[+2]_66 chrIII:127501-127920 3.9e-09 60_[+2]_19 chrXIV:102479-102994 3.9e-09 34_[+2]_45 chrXV:228109-228586 3.9e-09 38_[+2]_41 chrXIV:632385-632893 3.9e-09 14_[+2]_65 chrVII:730960-731400 3.9e-09 11_[+2]_68 chrVI:137254-137829 3.9e-09 42_[-2]_37 chrXV:487239-487737 3.9e-09 5_[+2]_74 chrXVI:810443-810867 3.9e-09 75_[+2]_4 chrXVI:856755-857154 4.7e-09 2_[+2]_77 chrXIII:768156-768635 4.7e-09 70_[-2]_9 chrIV:359346-359834 4.7e-09 41_[+2]_38 chrVII:115277-115779 4.7e-09 14_[+2]_65 chrVI:204775-205201 4.7e-09 32_[-2]_47 chrXII:656707-657200 4.7e-09 77_[-2]_2 chrXII:875188-875668 4.7e-09 2_[+2]_77 chrXI:219684-220123 4.7e-09 46_[+2]_33 chrXI:379434-379932 1.7e-08 51_[+2]_28 chrX:378157-378257 1.7e-08 50_[+2]_29 chrXII:687652-688160 1.7e-08 50_[-2]_29 chrXIII:372208-372731 1.7e-08 73_[-2]_6 chrXV:353883-354323 1.7e-08 34_[-2]_45 chrX:58928-59028 1.7e-08 20_[-2]_59 chrXIV:560524-561023 1.7e-08 16_[-2]_63 chrXI:307918-308434 1.7e-08 65_[-2]_14 chrV:438480-438990 1.7e-08 19_[+2]_60 chrVII:412099-412587 1.7e-08 48_[-2]_31 chrVII:823269-823719 1.7e-08 42_[+2]_37 chrXII:605134-605625 3.3e-08 77_[-2]_2 chrXIV:374683-375123 3.8e-08 20_[+2]_59 chrIV:1095145-1095671 3.8e-08 77_[-2]_2 chrXIII:504659-505221 4.3e-08 9_[+2]_70 chrVII:857240-857693 4.3e-08 49_[-2]_30 chrIX:300047-300488 6.3e-08 57_[-2]_22 chrVII:185506-185980 6.3e-08 67_[-2]_12 chrXVI:581770-582396 6.3e-08 33_[+2]_46 chrVI:226528-226942 6.3e-08 49_[-2]_30 chrXIII:480393-480886 6.3e-08 78_[-2]_1 chrV:435606-436019 6.3e-08 36_[-2]_43 chrXVI:559983-560491 9e-08 76_[-2]_3 chrVIII:358271-358762 9e-08 77_[-2]_2 chrII:36150-36621 9e-08 67_[+2]_12 chrXVI:622340-622844 9e-08 63_[-2]_16 chrVI:157730-158247 9e-08 43_[-2]_36 chrXV:340081-340591 1.6e-07 59_[-2]_20 chrV:492202-492581 1.6e-07 57_[-2]_22 chrX:233685-233785 1.6e-07 50_[+2]_29 chrX:396525-396625 3.2e-07 65_[-2]_14 chrVII:930745-931222 3.2e-07 64_[-2]_15 chrVII:845431-845959 3.2e-07 8_[+2]_71 chrXV:226479-226897 3.2e-07 17_[-2]_62 chrIV:83307-83818 3.2e-07 40_[+2]_39 chrXIII:183763-184182 3.2e-07 20_[-2]_59 chrXVI:860182-860682 3.2e-07 1_[+2]_78 chrXVI:572058-572580 3.2e-07 4_[+2]_75 chrVI:162031-162483 3.2e-07 25_[+2]_54 chrX:542770-542870 3.5e-07 42_[-2]_37 chrVI:210464-210889 3.5e-07 55_[-2]_24 chrXIII:168619-169060 3.5e-07 10_[+2]_69 chrVI:167250-167681 3.5e-07 26_[+2]_53 chrXIII:837732-838224 3.5e-07 4_[+2]_75 chrI:138909-139359 3.8e-07 72_[+2]_7 chrXIII:195907-196408 3.8e-07 37_[-2]_42 chrVI:101170-101589 3.8e-07 51_[+2]_28 chrXV:300856-301446 3.8e-07 [+2]_79 chrXIV:567870-568468 3.8e-07 [+2]_79 chrXIII:923207-924381 6.4e-07 27_[-2]_52 chrIV:1256879-1257291 8.1e-07 18_[-2]_61 chrXV:594220-594663 8.1e-07 8_[-2]_71 chrX:745164-745264 8.8e-07 39_[+2]_40 chrXIII:572702-573147 1.6e-06 55_[-2]_24 chrXI:0-1096 1.9e-06 55_[+2]_24 chrX:355146-355246 2.4e-06 63_[+2]_16 chrVII:544392-544925 2.4e-06 14_[-2]_65 chrXI:513196-513603 2.4e-06 28_[-2]_51 chrX:204518-204618 2.4e-06 30_[+2]_49 chrXV:571724-572165 2.4e-06 68_[+2]_11 chrII:405667-406253 2.4e-06 54_[+2]_25 chrVII:531419-531799 2.4e-06 55_[+2]_24 chrIX:336100-336634 2.4e-06 77_[-2]_2 chrX:374195-374295 2.4e-06 7_[-2]_72 chrIV:568700-569320 2.4e-06 8_[+2]_71 chrXII:426911-427441 2.4e-06 10_[+2]_69 chrXI:665522-666805 2.6e-06 23_[-2]_56 chrIV:1524089-1525677 2.6e-06 24_[-2]_55 chrI:229151-230195 2.6e-06 22_[-2]_57 chrVI:4462-6139 2.6e-06 26_[+2]_53 chrVII:73654-74227 2.8e-06 53_[+2]_26 chrXII:468758-468996 3.5e-06 32_[+2]_47 chrV:250109-250516 3.6e-06 28_[+2]_51 chrIII:168117-168616 3.6e-06 30_[-2]_49 chrXII:448463-449011 3.6e-06 8_[-2]_71 chrIV:644937-645407 3.6e-06 76_[-2]_3 chrVIII:134074-134603 3.6e-06 37_[+2]_42 chrXIII:808001-808544 3.6e-06 69_[-2]_10 chrV:130850-131392 3.6e-06 56_[-2]_23 chrIV:802549-803015 3.6e-06 44_[-2]_35 chrXIV:631688-632132 6.3e-06 31_[-2]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGYYYAGTKGKTWRAGSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BDTGGYYYAGTKGKTWRAGSS width=21 seqs=127 chrXII:167761-168260 ( 40) CTTGGCCGAGTGGTTAAGGCG 1 chrV:443065-443505 ( 15) CTTGGCCCAGTTGGTTAAGGC 1 chrXII:734600-734995 ( 60) CTTGGCCCAGTTGGTTAAGGC 1 chrXIV:602109-602564 ( 31) CTTGGCCCAGTTGGTTAAGGC 1 chrIX:183290-183719 ( 34) CTTGGCCCAGTTGGTTAAGGC 1 chrX:523870-523970 ( 24) CTTGGCCGAGTGGTTAAGGCG 1 chrXII:1051914-1052422 ( 1) CTTGGCCCAGTTGGTTAAGGC 1 chrVIII:132798-133366 ( 50) CTTGGCCGAGTGGTTAAGGCG 1 chrI:182382-182779 ( 48) CTTGGCCGAGTGGTTAAGGCG 1 chrXIII:258962-259451 ( 58) CTTGGCCGAGTGGTTAAGGCG 1 chrXIV:569627-570160 ( 72) CTTGGCCCAGTTGGTTAAGGC 1 chrIV:980761-981264 ( 68) CTTGGCCGAGTGGTTAAGGCG 1 chrXII:731910-732336 ( 22) TTTGGCCGAGTGGTTTAAGGC 1 chrX:617701-617801 ( 35) TTTGGCCGAGTGGTTTAAGGC 1 chrXI:83981-84433 ( 56) GTTGGCCGAGTGGTCTAAGGC 1 chrII:347404-347896 ( 8) GTTGGCCGAGTGGTCTAAGGC 1 chrIV:519556-519962 ( 39) GTTGGCCGAGTGGTCTAAGGC 1 chrII:9364-9891 ( 11) GTTGGCCGAGTGGTCTAAGGC 1 chrXII:962793-963273 ( 47) GTTGGCCGAGTGGTCTAAGGC 1 chrX:424274-424374 ( 15) GTTGGCCGAGTGGTCTAAGGC 1 chrXIV:725960-726412 ( 56) GTTGGCCGAGTGGTCTAAGGC 1 chrV:288228-288746 ( 62) TATGGCCGAGTGGTTAAGGCG 1 chrVI:191314-191802 ( 80) AGTGGCCGAGTGGTTAAGGCG 1 chrXII:784078-784592 ( 74) AGTGGCCGAGTGGTTAAGGCG 1 chrXV:274451-274998 ( 4) AGTGGCCGAGTGGTTAAGGCG 1 chrIV:1150653-1151155 ( 62) AGTGGCCGAGTGGTTAAGGCG 1 chrVII:794190-794599 ( 78) CATGGCGCAGTTGGTAGCGCG 1 chrXV:854001-854461 ( 53) CATGGCGCAGTTGGTAGCGCG 1 chrXII:214647-215159 ( 77) CATGGCGCAGTTGGTAGCGCG 1 chrXI:74396-74935 ( 14) CATGGCCAAGTTGGTTAAGGC 1 chrIII:127501-127920 ( 61) CATGGCCAAGTTGGTTAAGGC 1 chrXIV:102479-102994 ( 35) CATGGCCAAGTTGGTTAAGGC 1 chrXV:228109-228586 ( 39) CATGGCCAAGTTGGTTAAGGC 1 chrXIV:632385-632893 ( 15) CATGGCCAAGTTGGTTAAGGC 1 chrVII:730960-731400 ( 12) CATGGCCAAGTTGGTTAAGGC 1 chrVI:137254-137829 ( 43) CATGGCCAAGTTGGTTAAGGC 1 chrXV:487239-487737 ( 6) CATGGCCAAGTTGGTTAAGGC 1 chrXVI:810443-810867 ( 76) CATGGCCAAGTTGGTTAAGGC 1 chrXVI:856755-857154 ( 3) TGTGGCGTAGTCGGTAGCGCG 1 chrXIII:768156-768635 ( 71) TGTGGCGTAGTCGGTAGCGCG 1 chrIV:359346-359834 ( 42) GTTAGCTCAGTTGGTAGAGCG 1 chrVII:115277-115779 ( 15) GTTAGCTCAGTTGGTAGAGCG 1 chrVI:204775-205201 ( 33) TGTGGCGTAGTCGGTAGCGCG 1 chrXII:656707-657200 ( 78) TGTGGCGTAGTCGGTAGCGCG 1 chrXII:875188-875668 ( 3) GTTAGCTCAGTTGGTAGAGCG 1 chrXI:219684-220123 ( 47) TGTGGCGTAGTCGGTAGCGCG 1 chrXI:379434-379932 ( 52) CGTGGTCTAGTCGGTTATGGC 1 chrX:378157-378257 ( 51) CGTGGTCTAGTCGGTTATGGC 1 chrXII:687652-688160 ( 51) CGTGGTCTAGTCGGTTATGGC 1 chrXIII:372208-372731 ( 74) CGTGGTCTAGTCGGTTATGGC 1 chrXV:353883-354323 ( 35) TATGGCCAAGTTGGTAAGGCG 1 chrX:58928-59028 ( 21) TATGGCCAAGTTGGTAAGGCG 1 chrXIV:560524-561023 ( 17) TATGGCCAAGTTGGTAAGGCG 1 chrXI:307918-308434 ( 66) CGTGGTCTAGTCGGTTATGGC 1 chrV:438480-438990 ( 20) CGTGGTCTAGTCGGTTATGGC 1 chrVII:412099-412587 ( 49) CGTGGTCTAGTCGGTTATGGC 1 chrVII:823269-823719 ( 43) CGTGGTCTAGTCGGTTATGGC 1 chrXII:605134-605625 ( 78) TGTAGCTCAGTGGTTAGAGCT 1 chrXIV:374683-375123 ( 21) CTTAGCTCAGTTGGGAGAGCG 1 chrIV:1095145-1095671 ( 78) CTTAGCTCAGTTGGGAGAGCG 1 chrXIII:504659-505221 ( 10) TTTGGCCGAGCGGTCTAAGGC 1 chrVII:857240-857693 ( 50) TTTGGCCGAGCGGTCTAAGGC 1 chrIX:300047-300488 ( 58) GTTGGCGCAATCGGTAGCGCG 1 chrVII:185506-185980 ( 68) GTTGGCGCAATCGGTAGCGCG 1 chrXVI:581770-582396 ( 34) GTTGGCGCAATCGGTAGCGCG 1 chrVI:226528-226942 ( 50) GTTGGCGCAATCGGTAGCGCG 1 chrXIII:480393-480886 ( 79) GTTGGCGCAATCGGTAGCGCG 1 chrV:435606-436019 ( 37) GTTGGCGCAATCGGTAGCGCG 1 chrXVI:559983-560491 ( 77) TTTAGCTCAGTTGGGAGAGCG 1 chrVIII:358271-358762 ( 78) TTTAGCTCAGTTGGGAGAGCG 1 chrII:36150-36621 ( 68) TTTAGCTCAGTTGGGAGAGCG 1 chrXVI:622340-622844 ( 64) TTTAGCTCAGTTGGGAGAGCG 1 chrVI:157730-158247 ( 44) TTTAGCTCAGTTGGGAGAGCG 1 chrXV:340081-340591 ( 60) CGTGGCCCAATGGTCACGGCG 1 chrV:492202-492581 ( 58) CGTGGCCCAATGGTCACGGCG 1 chrX:233685-233785 ( 51) CGTGGCCCAATGGTCACGGCG 1 chrX:396525-396625 ( 66) AGTGGTTTAGTGGTAAAATCC 1 chrVII:930745-931222 ( 65) AGTGGTTTAGTGGTAAAATCC 1 chrVII:845431-845959 ( 9) AGTGGTTTAGTGGTAAAATCC 1 chrXV:226479-226897 ( 18) AGTGGTTTAGTGGTAAAATCC 1 chrIV:83307-83818 ( 41) AGTGGTTTAGTGGTAAAATCC 1 chrXIII:183763-184182 ( 21) AGTGGTTTAGTGGTAAAATCC 1 chrXVI:860182-860682 ( 2) AGTGGTTTAGTGGTAAAATCC 1 chrXVI:572058-572580 ( 5) AGTGGTTTAGTGGTAAAATCC 1 chrVI:162031-162483 ( 26) AGTGGTTTAGTGGTAAAATCC 1 chrX:542770-542870 ( 43) GGTAGCCAAGTTGGTTTAAGG 1 chrVI:210464-210889 ( 56) GGTAGCCAAGTTGGTTTAAGG 1 chrXIII:168619-169060 ( 11) GGTAGCCAAGTTGGTTTAAGG 1 chrVI:167250-167681 ( 27) GGTAGCCAAGTTGGTTTAAGG 1 chrXIII:837732-838224 ( 5) GGTAGCCAAGTTGGTTTAAGG 1 chrI:138909-139359 ( 73) TGTGGTCTAGTGGTATGATTC 1 chrXIII:195907-196408 ( 38) TGTGGTCTAGTGGTATGATTC 1 chrVI:101170-101589 ( 52) TGTGGTCTAGTGGTATGATTC 1 chrXV:300856-301446 ( 1) TGTGGTCTAGTGGTATGATTC 1 chrXIV:567870-568468 ( 1) TGTGGTCTAGTGGTATGATTC 1 chrXIII:923207-924381 ( 28) CTTGCCTCAGTGGTCTATACC 1 chrIV:1256879-1257291 ( 19) AGTGGTTCAGTGGTTAGAATT 1 chrXV:594220-594663 ( 9) AGTGGTTCAGTGGTTAGAATT 1 chrX:745164-745264 ( 40) GGTAGTGGAGTTGGATATGGG 1 chrXIII:572702-573147 ( 56) AGTAGCTCAGTAGGAAGAGCG 1 chrXI:0-1096 ( 56) CTTGCCTCAGCGGTTTATACC 1 chrX:355146-355246 ( 64) GATAGTTTAATGGTCAGAATG 1 chrVII:544392-544925 ( 15) GATAGTTTAATGGTCAGAATG 1 chrXI:513196-513603 ( 29) GATAGTTTAATGGTCAGAATG 1 chrX:204518-204618 ( 31) GATAGTTTAATGGTCAGAATG 1 chrXV:571724-572165 ( 69) GATAGTTTAATGGTCAGAATG 1 chrII:405667-406253 ( 55) GATAGTTTAATGGTCAGAATG 1 chrVII:531419-531799 ( 56) GATAGTTTAATGGTCAGAATG 1 chrIX:336100-336634 ( 78) GATAGTTTAATGGTCAGAATG 1 chrX:374195-374295 ( 8) GATAGTTTAATGGTCAGAATG 1 chrIV:568700-569320 ( 9) GATAGTTTAATGGTCAGAATG 1 chrXII:426911-427441 ( 11) GATAGTTTAATGGTCAGAATG 1 chrXI:665522-666805 ( 24) CTTGCCTCAGCGGTCTATACC 1 chrIV:1524089-1525677 ( 25) CTTGCCTCAGCGGTCTATACC 1 chrI:229151-230195 ( 23) CTTGCCTCAGCGGTCTATACC 1 chrVI:4462-6139 ( 27) CTTGCCTCAGCGGTCTATACC 1 chrVII:73654-74227 ( 54) CATAGTTTAGTTGTAAAATTG 1 chrXII:468758-468996 ( 33) TGTAGTTAAGCTGGTAAGAGC 1 chrV:250109-250516 ( 29) TATAGTGTAGTGGTTATCACT 1 chrIII:168117-168616 ( 31) TATAGTGTAGTGGTTATCACT 1 chrXII:448463-449011 ( 9) TATAGTGTAGTGGTTATCACT 1 chrIV:644937-645407 ( 77) TATAGTGTAGTGGTTATCACT 1 chrVIII:134074-134603 ( 38) TATAGTGTAGTGGTTATCACT 1 chrXIII:808001-808544 ( 70) TATAGTGTAGTGGTTATCACT 1 chrV:130850-131392 ( 57) TATAGTGTAGTGGTTATCACT 1 chrIV:802549-803015 ( 45) TATAGTGTAGTGGTTATCACT 1 chrXIV:631688-632132 ( 32) TGTGGTCTAGAGGTATGATTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGYYYAGTKGKTWRAGSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 9.28917 E= 8.8e-316 -129 85 43 -20 -12 -1363 91 21 -1363 -1363 -1363 170 0 -1363 185 -1363 -1363 -203 230 -1363 -1363 171 -1363 27 -1363 134 -9 11 -112 63 -9 30 170 -1363 -1363 -1363 -96 -1363 213 -1363 -528 -161 -1363 160 -528 -37 147 0 -1363 -1363 237 -1363 -1363 -1363 124 82 -112 19 -181 92 94 -1363 -1363 41 76 -303 88 -159 88 -15 -44 -138 -24 -1363 167 -129 -1363 143 74 -96 -1363 119 129 -183 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGYYYAGTKGKTWRAGSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 127 E= 8.8e-316 0.125984 0.346457 0.259843 0.267717 0.283465 0.000000 0.362205 0.354331 0.000000 0.000000 0.000000 1.000000 0.307087 0.000000 0.692913 0.000000 0.000000 0.047244 0.952756 0.000000 0.000000 0.629921 0.000000 0.370079 0.000000 0.488189 0.181102 0.330709 0.141732 0.299213 0.181102 0.377953 1.000000 0.000000 0.000000 0.000000 0.157480 0.000000 0.842520 0.000000 0.007874 0.062992 0.000000 0.929134 0.007874 0.149606 0.535433 0.307087 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.456693 0.543307 0.141732 0.220472 0.055118 0.582677 0.590551 0.000000 0.000000 0.409449 0.519685 0.023622 0.354331 0.102362 0.566929 0.173228 0.141732 0.118110 0.259843 0.000000 0.614173 0.125984 0.000000 0.519685 0.322835 0.157480 0.000000 0.440945 0.472441 0.086614 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGYYYAGTKGKTWRAGSS MEME-2 regular expression -------------------------------------------------------------------------------- [CTG][GTA]T[GA]G[CT][CT][TC]AGT[GT]G[TG][TC][AT][AG]A[GA][CG][GC] -------------------------------------------------------------------------------- Time 832.80 secs. ******************************************************************************** ******************************************************************************** MOTIF GYCCAAMAGATTTYWARTCTK MEME-3 width = 21 sites = 21 llr = 444 E-value = 1.6e-063 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYCCAAMAGATTTYWARTCTK MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::995a:a::::7961::: pos.-specific C :79a1:5::::3:6::::a:: probability G a:1::1::9:::3:::4:::7 matrix T :3::::::1:a77431:9:a3 bits 2.4 * * * 2.1 * * * 1.9 * ** * 1.7 * ** **** ** Relative 1.4 * ** **** ** Entropy 1.2 ****** **** * * **** (30.5 bits) 0.9 ************** ****** 0.7 ********************* 0.5 ********************* 0.2 ********************* 0.0 --------------------- Multilevel GCCCAACAGATTTCAAATCTG consensus T A CGTT G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCCAAMAGATTTYWARTCTK MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrV:288228-288746 + 40 4.24e-13 CGCGGGCAGA GCCCAACAGATTTCAAGTCTG TCGCCTTAAC chrXVI:689361-689884 - 20 4.24e-13 CGCGGGCAGA GCCCAACAGATTTCAAGTCTG TCGCCTTAAC chrXI:83981-84433 - 79 3.99e-11 C GTCCAACAGATCTTAAGTCTG CCGCCTTAGA chrII:347404-347896 - 31 3.99e-11 GCGGACAACC GTCCAACAGATCTTAAGTCTG CCGCCTTAGA chrIV:519556-519962 - 62 3.99e-11 GCGGACAACC GTCCAACAGATCTTAAGTCTG CCGCCTTAGA chrII:9364-9891 - 34 3.99e-11 GCGGACAACC GTCCAACAGATCTTAAGTCTG CCGCCTTAGA chrXII:962793-963273 + 24 3.99e-11 GCGGACAACC GTCCAACAGATCTTAAGTCTG CCGCCTTAGA chrXIV:725960-726412 + 33 3.99e-11 GCGGACAACC GTCCAACAGATCTTAAGTCTG CCGCCTTAGA chrXII:167761-168260 + 18 5.60e-11 CGCGGGCAAA GCCCAAAAGATTTCTAATCTT TCGCCTTAAC chrVII:561405-561946 + 71 5.60e-11 CGCGGGCAAA GCCCAAAAGATTTCTAATCTT TCGCCTTAA chrX:523870-523970 + 2 5.60e-11 A GCCCAAAAGATTTCTAATCTT TCGCCTTAAC chrVIII:132798-133366 + 28 5.60e-11 CGCGGGCAAA GCCCAAAAGATTTCTAATCTT TCGCCTTAAC chrI:182382-182779 + 26 5.60e-11 CGCGGGCAAA GCCCAAAAGATTTCTAATCTT TCGCCTTAAC chrXIII:258962-259451 + 36 5.60e-11 CGCGGGCAAA GCCCAAAAGATTTCTAATCTT TCGCCTTAAC chrIV:980761-981264 + 46 5.60e-11 CGCGGGCAAA GCCCAAAAGATTTCTAATCTT TCGCCTTAAC chrII:642845-643282 - 25 1.54e-10 CGCAGTGGTA GCGCAGCAGATTGCAAATCTG TTGGTCCTTA chrVII:706906-707357 - 58 1.54e-10 CGCAGTGGTA GCGCAGCAGATTGCAAATCTG TTGGTCCTTA chrXVI:775623-776054 - 8 1.54e-10 CGCAGTGGTA GCGCAGCAGATTGCAAATCTG TTGGTCC chrII:5813-7051 + 57 3.50e-09 TCATTCGGCG GCCCCAAATATTGTATAACTG CTCTTAATAC chrVII:10-1200 + 57 3.50e-09 TTATTCGGCG GCCCCAAATATTGTATAACTG CTCTTAATGC chrI:2-1346 + 8 4.70e-09 TTCGGCG GTCCCAAATATTGTATAACTG CCCTTAATAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCCAAMAGATTTYWARTCTK MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:288228-288746 4.2e-13 39_[+3]_40 chrXVI:689361-689884 4.2e-13 19_[-3]_60 chrXI:83981-84433 4e-11 78_[-3]_1 chrII:347404-347896 4e-11 30_[-3]_49 chrIV:519556-519962 4e-11 61_[-3]_18 chrII:9364-9891 4e-11 33_[-3]_46 chrXII:962793-963273 4e-11 23_[+3]_56 chrXIV:725960-726412 4e-11 32_[+3]_47 chrXII:167761-168260 5.6e-11 17_[+3]_62 chrVII:561405-561946 5.6e-11 70_[+3]_9 chrX:523870-523970 5.6e-11 1_[+3]_78 chrVIII:132798-133366 5.6e-11 27_[+3]_52 chrI:182382-182779 5.6e-11 25_[+3]_54 chrXIII:258962-259451 5.6e-11 35_[+3]_44 chrIV:980761-981264 5.6e-11 45_[+3]_34 chrII:642845-643282 1.5e-10 24_[-3]_55 chrVII:706906-707357 1.5e-10 57_[-3]_22 chrXVI:775623-776054 1.5e-10 7_[-3]_72 chrII:5813-7051 3.5e-09 56_[+3]_23 chrVII:10-1200 3.5e-09 56_[+3]_23 chrI:2-1346 4.7e-09 7_[+3]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCCAAMAGATTTYWARTCTK MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYCCAAMAGATTTYWARTCTK width=21 seqs=21 chrV:288228-288746 ( 40) GCCCAACAGATTTCAAGTCTG 1 chrXVI:689361-689884 ( 20) GCCCAACAGATTTCAAGTCTG 1 chrXI:83981-84433 ( 79) GTCCAACAGATCTTAAGTCTG 1 chrII:347404-347896 ( 31) GTCCAACAGATCTTAAGTCTG 1 chrIV:519556-519962 ( 62) GTCCAACAGATCTTAAGTCTG 1 chrII:9364-9891 ( 34) GTCCAACAGATCTTAAGTCTG 1 chrXII:962793-963273 ( 24) GTCCAACAGATCTTAAGTCTG 1 chrXIV:725960-726412 ( 33) GTCCAACAGATCTTAAGTCTG 1 chrXII:167761-168260 ( 18) GCCCAAAAGATTTCTAATCTT 1 chrVII:561405-561946 ( 71) GCCCAAAAGATTTCTAATCTT 1 chrX:523870-523970 ( 2) GCCCAAAAGATTTCTAATCTT 1 chrVIII:132798-133366 ( 28) GCCCAAAAGATTTCTAATCTT 1 chrI:182382-182779 ( 26) GCCCAAAAGATTTCTAATCTT 1 chrXIII:258962-259451 ( 36) GCCCAAAAGATTTCTAATCTT 1 chrIV:980761-981264 ( 46) GCCCAAAAGATTTCTAATCTT 1 chrII:642845-643282 ( 25) GCGCAGCAGATTGCAAATCTG 1 chrVII:706906-707357 ( 58) GCGCAGCAGATTGCAAATCTG 1 chrXVI:775623-776054 ( 8) GCGCAGCAGATTGCAAATCTG 1 chrII:5813-7051 ( 57) GCCCCAAATATTGTATAACTG 1 chrVII:10-1200 ( 57) GCCCCAAATATTGTATAACTG 1 chrI:2-1346 ( 8) GTCCCAAATATTGTATAACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCCAAMAGATTTYWARTCTK MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 11.4628 E= 1.6e-063 -1104 -1104 237 -1104 -1104 179 -1104 12 -1104 215 -43 -1104 -1104 237 -1104 -1104 148 -43 -1104 -1104 148 -1104 -43 -1104 63 144 -1104 -1104 170 -1104 -1104 -1104 -1104 -1104 215 -110 170 -1104 -1104 -1104 -1104 -1104 -1104 170 -1104 57 -1104 122 -1104 -1104 57 122 -1104 157 -1104 48 112 -1104 -1104 12 148 -1104 -1104 -110 101 -1104 98 -1104 -110 -1104 -1104 148 -1104 237 -1104 -1104 -1104 -1104 -1104 170 -1104 -1104 179 12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCCAAMAGATTTYWARTCTK MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 21 E= 1.6e-063 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.857143 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.476190 0.523810 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.857143 0.142857 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.285714 0.000000 0.714286 0.000000 0.000000 0.285714 0.714286 0.000000 0.571429 0.000000 0.428571 0.666667 0.000000 0.000000 0.333333 0.857143 0.000000 0.000000 0.142857 0.619048 0.000000 0.380952 0.000000 0.142857 0.000000 0.000000 0.857143 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCCAAMAGATTTYWARTCTK MEME-3 regular expression -------------------------------------------------------------------------------- G[CT]CCAA[CA]AGAT[TC][TG][CT][AT]A[AG]TCT[GT] -------------------------------------------------------------------------------- Time 1130.50 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:167866-169658 5.35e-01 100 chrVII:1000134-1000704 9.93e-01 100 chrXIV:725960-726412 1.50e-16 [-1(1.11e-06)]_11_[+3(3.99e-11)]_2_\ [-2(8.41e-10)]_24 chrVI:162031-162483 5.45e-10 25_[+2(3.16e-07)]_14_[-1(8.39e-10)]_\ 19 chrXI:99692-100095 6.74e-01 100 chrI:71609-73674 1.92e-01 100 chrIV:1278599-1279356 5.74e-01 100 chrXVI:810443-810867 5.98e-06 75_[+2(3.92e-09)]_4 chrXIII:420207-420869 8.13e-01 100 chrVII:287117-287640 5.38e-04 31_[+1(4.76e-08)]_48 chrVII:110425-110943 1.63e-03 [+1(2.61e-06)]_79 chrXI:219684-220123 2.63e-05 46_[+2(4.66e-09)]_33 chrIV:541228-541995 6.08e-01 100 chrIII:13992-17160 8.36e-01 100 chrXVI:338670-339138 8.41e-03 3_[+1(3.32e-06)]_76 chrIV:980761-981264 2.40e-17 21_[+1(4.56e-07)]_3_[+3(5.60e-11)]_\ 1_[-2(2.14e-10)]_12 chrXI:355233-356481 9.79e-01 100 chrIX:254170-254612 4.92e-01 100 chrXIV:413533-416659 9.49e-01 100 chrIV:837103-837372 4.15e-01 100 chrXII:214647-215159 1.63e-12 39_[+1(6.99e-11)]_16_[-2(2.27e-09)]_\ 3 chrIX:248621-249506 9.05e-01 100 chrII:139105-140950 9.94e-03 13_[+2(4.22e-05)]_66 chrXI:302698-303229 1.12e-04 79_[-1(4.76e-08)] chrXVI:55855-56505 3.11e-04 48_[+1(4.76e-08)]_31 chrVII:122021-122674 5.09e-07 13_[-1(2.64e-10)]_66 chrXV:594220-594663 7.51e-04 8_[-2(8.12e-07)]_71 chrXI:578757-579346 2.94e-05 28_[-1(3.57e-09)]_51 chrVII:648781-649412 6.62e-01 100 chrXV:758991-759607 6.65e-01 100 chrXII:1017781-1019429 5.74e-01 100 chrV:42121-42593 1.47e-01 100 chrXVI:520054-520536 7.29e-01 100 chrII:375990-378487 4.00e-01 100 chrIV:619668-620248 1.03e-05 70_[+1(5.27e-08)]_9 chrXV:487239-487737 1.56e-09 5_[+2(3.92e-09)]_17_[-1(1.05e-07)]_\ 36 chrIV:802549-803015 6.59e-08 8_[+1(2.71e-09)]_15_[-2(3.65e-06)]_\ 35 chrXIII:572702-573147 1.09e-07 18_[+1(2.79e-07)]_16_[-2(1.56e-06)]_\ 24 chrVI:137254-137829 4.27e-10 4_[+1(1.05e-07)]_17_[-2(3.92e-09)]_\ 37 chrXII:645816-646242 7.70e-01 100 chrVIII:16892-17860 1.57e-01 100 chrX:415727-415827 1.33e-01 100 chrVII:10-1200 5.91e-05 56_[+3(3.50e-09)]_23 chrVIII:115345-116426 9.97e-01 100 chrXII:737730-738165 5.62e-01 100 chrXIII:158418-158982 2.62e-01 100 chrXIII:905747-906216 6.62e-01 100 chrXIV:569627-570160 4.43e-13 33_[+1(1.26e-10)]_17_[-2(2.14e-10)]_\ 8 chrVII:148021-149540 7.51e-01 100 chrXVI:731619-732313 4.63e-01 100 chrXII:949483-953709 4.17e-01 100 chrIV:1488910-1490471 1.54e-01 100 chrXV:443794-444290 8.64e-01 100 chrXIII:131416-132100 4.00e-01 100 chrVII:730960-731400 2.88e-09 11_[+2(3.92e-09)]_17_[-1(1.05e-07)]_\ 30 chrXI:430638-431714 9.36e-01 100 chrX:233685-233785 2.90e-04 50_[+2(1.57e-07)]_29 chrVI:95426-95956 2.33e-01 100 chrXVI:193041-194602 2.64e-01 100 chrV:492202-492581 3.52e-08 20_[+1(5.27e-08)]_16_[-2(1.57e-07)]_\ 22 chrXI:202830-203307 1.88e-07 22_[-1(2.64e-10)]_57 chrXII:728169-728671 4.95e-01 100 chrXI:518795-521181 4.91e-01 100 chrX:701734-701834 8.69e-01 100 chrV:130850-131392 9.40e-08 20_[+1(4.66e-09)]_15_[-2(3.65e-06)]_\ 23 chrI:189992-190557 6.90e-01 100 chrVI:220100-222070 3.03e-01 100 chrXIII:258962-259451 2.40e-17 11_[+1(4.56e-07)]_3_[+3(5.60e-11)]_\ 1_[-2(2.14e-10)]_22 chrXIII:837732-838224 3.15e-08 4_[+2(3.46e-07)]_32_[-1(4.76e-08)]_\ 22 chrII:591528-591807 3.58e-01 100 chrXII:374199-374650 7.46e-05 22_[-1(5.27e-08)]_57 chrVII:828424-828980 4.17e-01 100 chrXI:24898-26531 5.00e-01 100 chrII:680296-682261 8.98e-01 100 chrXII:875188-875668 1.49e-10 2_[+2(4.66e-09)]_39_[-1(3.57e-09)]_\ 17 chrI:182382-182779 2.40e-17 1_[+1(4.56e-07)]_3_[+3(5.60e-11)]_1_\ [-2(2.14e-10)]_32 chrV:174685-175012 6.19e-01 100 chrXII:241590-243697 9.91e-01 100 chrIV:1095145-1095671 2.68e-09 21_[+1(3.48e-08)]_35_[-2(3.81e-08)]_\ 2 chrXII:5449-5940 5.15e-01 100 chrVI:224365-225339 6.29e-01 100 chrXVI:431796-432202 9.49e-01 100 chrV:487074-487603 1.37e-05 52_[+1(8.39e-10)]_27 chrXIV:567870-568468 6.23e-10 [+2(3.80e-07)]_46_[-1(4.40e-10)]_12 chrII:165030-165862 1.04e-02 100 chrXII:231961-234296 7.24e-01 100 chrI:185557-186149 6.21e-01 100 chrXII:805488-807169 5.07e-01 100 chrXV:882019-882502 9.24e-01 100 chrVII:919786-920264 7.66e-01 100 chrVI:157730-158247 2.76e-04 43_[-2(9.02e-08)]_36 chrX:704625-704725 9.41e-01 100 chrXV:978717-979412 5.73e-01 100 chrIV:234255-234584 6.25e-01 100 chrXV:80335-83511 1.23e-01 78_[+2(8.49e-05)]_1 chrVII:533803-535227 2.87e-01 100 chrXVI:188568-189000 1.75e-01 100 chrXII:426911-427441 1.85e-08 10_[+2(2.45e-06)]_15_[-1(2.36e-07)]_\ 4_[+3(2.61e-05)]_8 chrXVI:775623-776054 1.77e-06 7_[-3(1.54e-10)]_72 chrVIII:132798-133366 2.40e-17 3_[+1(4.56e-07)]_3_[+3(5.60e-11)]_1_\ [-2(2.14e-10)]_30 chrV:434377-434766 1.59e-03 29_[+1(2.61e-06)]_50 chrII:159816-160071 3.89e-01 100 chrXVI:572058-572580 5.45e-10 4_[+2(3.16e-07)]_14_[-1(8.39e-10)]_\ 40 chrXII:932031-932534 9.82e-01 100 chrXII:198350-199755 6.22e-01 100 chrII:555518-558497 3.34e-02 100 chrIV:358056-358432 9.24e-01 100 chrXVI:860182-860682 4.61e-10 1_[+2(3.16e-07)]_14_[-1(8.39e-10)]_\ 43 chrIII:227763-228236 1.06e-05 38_[-3(3.62e-05)]_3_[-1(2.45e-06)]_\ 17 chrXV:1-1012 9.32e-01 100 chrXII:1051914-1052422 7.18e-07 [-2(2.14e-10)]_79 chrIX:129169-130207 8.29e-01 100 chrV:435606-436019 2.39e-04 36_[-2(6.32e-08)]_43 chrVI:106517-106878 5.28e-01 100 chrIX:415601-415921 7.34e-01 100 chrXVI:879864-880581 8.96e-02 100 chrXV:424148-424768 5.37e-01 100 chrXII:837590-839621 5.89e-01 100 chrIX:96676-97567 8.84e-01 100 chrXV:300856-301446 1.23e-09 [+2(3.80e-07)]_45_[-1(4.40e-10)]_13 chrVII:555062-558017 5.52e-02 26_[-1(9.19e-05)]_53 chrXIII:463324-463895 5.74e-04 35_[-1(2.36e-07)]_44 chrVIII:21002-21385 9.66e-01 100 chrIV:568700-569320 2.82e-08 8_[+2(2.45e-06)]_15_[-1(2.36e-07)]_\ 4_[+3(4.14e-05)]_10 chrV:266149-268238 8.52e-01 100 chrVII:345799-346638 5.84e-01 100 chrXV:976191-978356 7.25e-01 100 chrXIII:605786-606068 6.91e-01 100 chrXV:796925-797504 8.31e-01 100 chrX:424274-424374 3.49e-06 14_[-2(8.41e-10)]_65 chrVII:437066-440128 4.61e-01 100 chrX:374195-374295 8.97e-09 7_[-2(2.45e-06)]_25_[+1(2.05e-09)]_\ 26 chrXII:498473-499794 2.97e-01 100 chrXII:86887-87210 8.44e-01 100 chrI:180943-181510 1.23e-02 47_[-1(2.47e-05)]_32 chrXIII:499076-501325 6.46e-01 100 chrXIV:241384-241767 3.23e-01 100 chrI:68337-69076 6.70e-01 100 chrVII:370625-371555 4.98e-01 100 chrXI:326077-327634 1.90e-01 100 chrI:166050-166654 5.14e-07 6_[-1(6.99e-11)]_73 chrV:135167-135696 9.72e-07 53_[+1(2.64e-10)]_26 chrXI:458356-459003 1.35e-02 10_[-1(2.47e-05)]_69 chrXV:520412-521022 5.16e-02 100 chrIV:1150653-1151155 1.58e-05 61_[-2(1.88e-09)]_18 chrXIII:480393-480886 5.72e-11 41_[+1(2.64e-10)]_16_[-2(6.32e-08)]_\ 1 chrVII:323459-324101 4.55e-01 100 chrX:523870-523970 1.90e-13 1_[+3(5.60e-11)]_1_[-2(2.14e-10)]_\ 56 chrXI:7809-8190 7.94e-01 100 chrVII:876191-876746 1.50e-06 17_[-1(2.64e-10)]_62 chrXIII:808001-808544 3.56e-07 33_[+1(4.76e-08)]_15_[-2(3.65e-06)]_\ 10 chrVII:823269-823719 1.68e-05 42_[+2(1.66e-08)]_37 chrXIII:352071-352602 1.19e-05 53_[-1(3.48e-08)]_26 chrIV:579056-580790 2.34e-01 100 chrVIII:62500-62943 5.42e-01 100 chrV:138442-141466 9.91e-01 100 chrVII:412099-412587 2.84e-10 10_[+1(1.60e-08)]_17_[-2(1.66e-08)]_\ 31 chrVIII:475500-475907 8.96e-06 62_[+1(1.54e-09)]_17 chrIV:321628-321991 6.02e-01 100 chrXII:366032-366579 4.29e-01 100 chrIV:543571-543970 7.84e-01 100 chrXIII:183763-184182 5.91e-04 20_[-2(3.16e-07)]_59 chrIV:220986-222366 7.16e-01 100 chrVII:23867-25768 2.05e-01 100 chrXII:962793-963273 1.58e-13 23_[+3(3.99e-11)]_2_[-2(8.41e-10)]_\ 33 chrIV:83307-83818 5.45e-10 40_[+2(3.16e-07)]_14_[-1(8.39e-10)]_\ 4 chrXII:919454-922633 4.09e-01 100 chrI:14672-15003 4.17e-01 100 chrIV:1086847-1087391 4.64e-02 100 chrXV:24510-25083 5.98e-01 100 chrX:115710-115810 3.40e-06 41_[+1(8.39e-10)]_38 chrIV:411141-411682 5.33e-01 100 chrXI:282795-284825 4.39e-01 100 chrXIII:886968-889121 7.63e-01 100 chrVII:989808-990492 4.04e-01 100 chrXIV:499220-502871 8.12e-03 58_[-2(4.82e-05)]_21 chrIV:1352165-1352738 1.31e-06 74_[+1(2.64e-10)]_5 chrXIV:330421-332465 7.87e-01 100 chrX:291098-291198 3.65e-01 100 chrIX:141737-142276 9.69e-01 100 chrXII:809099-810287 4.77e-01 100 chrXVI:819153-819816 3.45e-03 100 chrV:362124-363296 3.72e-01 100 chrVII:1004018-1004434 3.13e-01 100 chrXVI:794462-796085 7.30e-01 100 chrXV:505095-505521 9.21e-01 100 chrXI:0-1096 2.53e-03 55_[+2(1.91e-06)]_24 chrIV:599733-600338 5.72e-01 100 chrIX:386536-387075 8.80e-03 34_[+3(1.09e-05)]_45 chrIV:1161531-1162089 7.87e-01 100 chrIII:228581-229196 1.95e-01 100 chrVII:765990-766522 9.30e-01 100 chrIII:82371-82772 2.16e-01 100 chrIII:107170-107824 7.18e-01 100 chrXVI:40101-40646 3.21e-02 12_[-2(6.84e-05)]_67 chrIX:131835-132116 7.91e-01 100 chrXIV:739301-739742 5.63e-01 100 chrX:517645-517745 1.43e-03 2_[+1(3.32e-06)]_77 chrIV:975919-976799 3.19e-01 100 chrII:197255-197877 1.09e-06 20_[-1(1.26e-10)]_59 chrXIV:776634-777088 3.84e-01 100 chrXIII:753000-755117 7.03e-01 100 chrXII:1064021-1065380 7.63e-01 100 chrXIV:426893-427369 1.71e-01 100 chrIV:1269888-1271122 6.05e-01 100 chrXI:517767-518117 4.58e-01 100 chrV:438480-438990 2.84e-10 19_[+2(1.66e-08)]_17_[-1(1.60e-08)]_\ 22 chrX:159755-159855 1.39e-01 100 chrVII:319590-320139 1.49e-03 7_[-1(2.61e-06)]_72 chrIX:336100-336634 5.36e-07 41_[+1(2.36e-07)]_15_[-2(2.45e-06)]_\ 2 chrIV:216562-218049 2.88e-02 100 chrIX:394619-395195 1.13e-01 100 chrXVI:340428-340804 2.62e-02 46_[-2(7.35e-05)]_33 chrIV:306333-310199 5.52e-01 100 chrXV:226479-226897 2.03e-03 17_[-2(3.16e-07)]_62 chrXII:818262-820543 2.72e-01 100 chrIV:322199-323636 1.86e-01 100 chrXVI:279947-280321 7.39e-01 100 chrXI:517210-517503 3.90e-01 100 chrXV:216233-216726 8.94e-01 100 chrIV:1354474-1356120 2.24e-01 100 chrX:715792-715892 5.77e-01 100 chrIV:520137-520479 9.43e-01 100 chrXV:980478-981033 4.38e-06 51_[-1(4.40e-10)]_28 chrX:157390-157490 7.85e-02 100 chrXIII:747696-748143 2.36e-06 32_[+1(2.05e-09)]_47 chrVI:31886-32533 6.82e-01 100 chrXII:656707-657200 1.56e-11 40_[+1(7.16e-10)]_16_[-2(4.66e-09)]_\ 2 chrVI:226528-226942 5.72e-11 12_[+1(2.64e-10)]_16_[-2(6.32e-08)]_\ 30 chrXII:924444-924846 2.64e-01 100 chrIV:992597-993205 3.60e-06 20_[-1(8.39e-10)]_59 chrXV:854001-854461 1.12e-12 15_[+1(6.99e-11)]_16_[-2(2.27e-09)]_\ 27 chrV:221497-221802 9.80e-02 100 chrXV:677891-679372 9.89e-01 100 chrXII:83835-84481 8.87e-01 100 chrVI:30846-31703 9.31e-01 100 chrXIII:161899-164355 8.85e-01 100 chrVII:254118-254712 4.82e-01 100 chrXIII:309663-310022 4.74e-01 100 chrXIII:872679-872945 9.39e-02 100 chrXI:307918-308434 2.84e-10 27_[+1(1.60e-08)]_17_[-2(1.66e-08)]_\ 14 chrIV:1305385-1306122 9.53e-01 100 chrIX:370220-370632 4.74e-01 100 chrVI:204775-205201 3.93e-06 32_[-2(4.66e-09)]_47 chrXV:340081-340591 2.22e-08 22_[+1(5.27e-08)]_16_[-2(1.57e-07)]_\ 20 chrVI:268895-269129 1.08e-01 100 chrXVI:701844-702327 8.81e-01 100 chrIX:210503-210956 1.38e-06 28_[-1(1.26e-10)]_51 chrIV:835737-836569 5.98e-01 100 chrX:531591-531691 1.80e-01 100 chrXI:146801-147244 4.81e-01 100 chrXI:382143-382487 6.75e-01 100 chrXII:368242-371362 7.97e-01 100 chrV:490999-491671 7.45e-01 100 chrXII:793695-797406 9.61e-01 100 chrVIII:134074-134603 6.77e-08 37_[+2(3.65e-06)]_15_[-1(2.71e-09)]_\ 6 chrXVI:689361-689884 6.29e-12 19_[-3(4.24e-13)]_3_[-1(2.45e-06)]_\ 36 chrV:396171-398004 5.49e-01 100 chrXI:230956-231779 7.47e-01 100 chrXII:1012103-1012408 8.11e-02 25_[+1(8.59e-05)]_54 chrXV:384689-385054 9.38e-01 100 chrV:6136-6644 9.57e-01 100 chrV:241940-242611 1.26e-01 100 chrXV:1025717-1026106 6.25e-01 100 chrII:181306-181649 8.54e-01 100 chrVII:531419-531799 1.96e-04 27_[+1(3.80e-05)]_7_[+2(2.45e-06)]_\ 24 chrIV:644937-645407 1.31e-08 40_[+1(2.71e-09)]_15_[-2(3.65e-06)]_\ 3 chrV:430971-431571 1.70e-02 23_[+1(5.88e-05)]_56 chrV:207115-207665 7.70e-04 57_[-1(2.61e-06)]_22 chrXVI:581770-582396 5.72e-11 33_[+2(6.32e-08)]_16_[-1(2.64e-10)]_\ 9 chrIII:299034-299391 6.28e-01 100 chrXII:711974-713611 4.80e-02 33_[-3(3.02e-05)]_46 chrXIII:253313-253629 1.89e-03 19_[+3(7.34e-06)]_60 chrIV:488431-489114 7.96e-04 77_[-1(2.03e-06)]_2 chrV:99890-100345 5.87e-01 100 chrV:551007-551564 1.23e-06 59_[+1(1.26e-10)]_20 chrIV:116226-118216 9.73e-01 100 chrIV:1461460-1462059 8.92e-03 15_[+1(2.47e-05)]_64 chrXIII:287500-287795 9.00e-01 100 chrI:202520-202849 9.69e-01 100 chrXIV:87422-87794 4.43e-01 100 chrI:20694-21165 8.71e-01 100 chrXII:448463-449011 8.96e-03 8_[-2(3.65e-06)]_71 chrVII:968841-969199 6.45e-01 100 chrXII:589053-589312 8.68e-01 100 chrV:117596-118311 8.39e-01 100 chrIV:884192-884653 3.45e-01 100 chrI:58443-58753 9.25e-01 100 chrVII:206152-206982 3.52e-01 100 chrXII:261350-264001 5.05e-01 100 chrIX:325537-326098 5.65e-05 22_[-1(6.03e-09)]_57 chrXIV:442780-444826 9.29e-01 100 chrIV:368857-369173 2.11e-01 100 chrIX:174824-175411 6.96e-05 5_[-1(6.03e-09)]_74 chrVII:845431-845959 5.45e-10 8_[+2(3.16e-07)]_14_[-1(8.39e-10)]_\ 36 chrII:9364-9891 1.50e-16 10_[+2(8.41e-10)]_2_[-3(3.99e-11)]_\ 11_[+1(1.11e-06)]_14 chrXII:648968-651263 7.13e-01 100 chrIV:1344970-1345762 3.36e-01 100 chrVII:115277-115779 1.49e-10 14_[+2(4.66e-09)]_39_[-1(3.57e-09)]_\ 5 chrXIV:783354-784324 3.58e-02 34_[+2(5.16e-05)]_45 chrIV:385267-387439 2.12e-01 100 chrVI:222906-224164 3.86e-01 100 chrIV:1507124-1507625 1.64e-01 100 chrVIII:488287-488628 8.99e-01 100 chrXII:611680-612068 6.58e-01 100 chrIII:294343-295836 8.71e-01 100 chrIX:183290-183719 1.41e-06 33_[-2(2.14e-10)]_46 chrX:663600-663700 3.03e-01 100 chrVI:101170-101589 1.28e-03 51_[+2(3.80e-07)]_28 chrII:44962-45403 9.17e-01 100 chrIX:138127-139415 8.77e-01 100 chrIV:1468755-1469172 7.04e-01 100 chrXVI:74979-76808 3.64e-03 71_[-3(5.20e-05)]_8 chrXIII:145872-147243 2.94e-01 100 chrXIV:559303-559579 2.77e-01 100 chrIV:76833-77349 7.52e-02 100 chrVI:155809-156326 1.54e-01 100 chrX:538360-538460 1.22e-06 53_[-1(3.12e-09)]_26 chrXI:313169-313673 1.59e-03 39_[+1(2.61e-06)]_40 chrXIV:104617-105107 4.40e-05 34_[-1(6.03e-09)]_45 chrII:476847-477788 5.95e-01 100 chrVII:483228-483811 1.56e-01 14_[-1(9.83e-05)]_65 chrXI:558662-559487 4.88e-01 100 chrVII:364892-366770 8.03e-01 100 chrIV:12-392 7.59e-01 100 chrVIII:451264-453070 3.61e-01 100 chrXI:140787-141472 4.97e-01 100 chrXV:908527-909458 2.87e-01 100 chrXV:113576-114183 5.64e-05 14_[-1(6.03e-09)]_65 chrVII:541613-542177 3.53e-06 45_[-1(8.39e-10)]_34 chrXIV:632385-632893 2.88e-09 14_[+2(3.92e-09)]_17_[-1(1.05e-07)]_\ 27 chrXIV:61545-64664 5.36e-01 100 chrIV:129736-131000 9.85e-01 100 chrX:414783-414883 5.41e-07 25_[-1(2.64e-10)]_54 chrII:604073-607375 3.14e-01 100 chrIV:1362109-1362590 1.99e-01 100 chrII:332213-334117 6.13e-01 100 chrXV:832202-832876 9.90e-01 100 chrIV:538848-539399 2.30e-01 100 chrIV:229466-230979 2.44e-01 100 chrXIII:388117-388616 3.62e-01 100 chrVII:702687-703325 3.90e-01 100 chrXIII:549906-553268 8.82e-01 100 chrIII:168117-168616 1.26e-04 7_[-1(8.59e-05)]_2_[-2(3.65e-06)]_\ 49 chrXII:423962-424577 8.87e-01 100 chrXV:288007-288497 3.28e-05 47_[-1(4.76e-08)]_32 chrXVI:622340-622844 6.30e-09 7_[+1(3.48e-08)]_35_[-2(9.02e-08)]_\ 16 chrX:617701-617801 5.15e-08 34_[+2(6.78e-10)]_45 chrII:36150-36621 5.29e-04 67_[+2(9.02e-08)]_12 chrXIV:301256-303679 4.43e-01 100 chrXV:841750-842922 3.03e-01 100 chrVII:706906-707357 5.88e-10 36_[+1(1.90e-06)]_[-3(1.54e-10)]_22 chrV:61039-62168 3.28e-01 100 chrVIII:410972-411779 4.11e-01 100 chrVII:625066-625581 9.21e-01 100 chrIX:197398-197799 5.10e-01 100 chrXV:274451-274998 3.33e-08 3_[+2(1.88e-09)]_44_[-1(2.77e-06)]_\ 11 chrVII:738848-739574 9.90e-07 3_[-1(1.26e-10)]_76 chrXVI:699873-700720 6.95e-01 100 chrXV:109460-111262 8.14e-01 100 chrXII:784078-784592 6.38e-06 73_[+2(1.88e-09)]_6 chrVIII:400909-401317 4.51e-01 100 chrXV:228109-228586 8.47e-10 38_[+2(3.92e-09)]_17_[-1(1.05e-07)]_\ 3 chrXVI:718381-719528 7.59e-01 100 chrXII:459597-460704 4.48e-01 100 chrVII:205313-205961 5.24e-03 16_[-1(2.47e-05)]_63 chrIV:465098-465583 7.31e-01 100 chrXVI:108557-114882 6.75e-02 100 chrII:372578-375816 3.65e-01 100 chrVII:185506-185980 5.72e-11 30_[+1(2.64e-10)]_16_[-2(6.32e-08)]_\ 12 chrVII:647985-648488 9.72e-01 100 chrV:23504-23967 1.68e-01 100 chrII:644974-645420 1.16e-06 60_[-1(8.39e-10)]_19 chrX:651212-651312 7.61e-01 100 chrII:405667-406253 3.04e-08 8_[-1(2.05e-09)]_25_[+2(2.45e-06)]_\ 25 chrXIV:764022-764294 8.02e-01 100 chrVII:700392-701257 7.65e-01 100 chrIV:410193-410755 1.05e-03 22_[+3(2.57e-05)]_57 chrXI:158173-159612 8.98e-01 100 chrVII:856612-857036 5.35e-01 100 chrX:139148-139248 8.32e-01 100 chrII:87933-88598 4.99e-01 100 chrIV:1012275-1013991 4.66e-01 100 chrIII:78291-78762 7.62e-01 100 chrI:28489-28940 8.38e-01 100 chrXIII:195907-196408 1.31e-03 37_[-2(3.80e-07)]_42 chrXV:988129-989590 9.20e-01 100 chrVIII:174970-175701 9.26e-01 100 chrIX:177573-178036 5.39e-01 100 chrVIII:358271-358762 5.94e-09 21_[+1(3.48e-08)]_35_[-2(9.02e-08)]_\ 2 chrIV:519556-519962 1.95e-13 38_[+2(8.41e-10)]_2_[-3(3.99e-11)]_\ 18 chrXIII:290601-291142 3.76e-07 20_[-1(8.39e-10)]_59 chrXI:108359-110616 8.73e-01 100 chrIV:1201537-1202098 2.75e-07 24_[-1(2.64e-10)]_55 chrXI:614170-615376 5.68e-01 100 chrVII:857240-857693 7.45e-05 49_[-2(4.34e-08)]_30 chrVIII:555905-557206 5.38e-01 100 chrXIV:631688-632132 6.80e-03 31_[-2(6.27e-06)]_48 chrI:151317-151923 2.18e-01 100 chrXIII:91615-92110 7.29e-01 100 chrXIII:923207-924381 2.57e-03 27_[-2(6.38e-07)]_52 chrXVI:559983-560491 6.30e-09 20_[+1(3.48e-08)]_35_[-2(9.02e-08)]_\ 3 chrXV:571724-572165 4.98e-03 68_[+2(2.45e-06)]_11 chrVI:167250-167681 3.15e-08 26_[+2(3.46e-07)]_32_[-1(4.76e-08)] chrXIII:914912-915626 6.72e-01 100 chrXV:27822-28063 8.25e-01 100 chrX:204518-204618 2.13e-06 30_[+2(2.45e-06)]_15_[-1(2.36e-07)]_\ 13 chrXII:897678-899658 9.93e-01 100 chrXIV:560524-561023 5.23e-05 16_[-2(1.66e-08)]_63 chrIX:98194-100046 9.91e-01 100 chrXI:162081-162756 7.50e-01 100 chrXV:252831-255051 9.12e-01 100 chrVIII:505787-506223 6.96e-01 100 chrIV:1449914-1451294 8.74e-01 100 chrXI:513196-513603 2.18e-03 28_[-2(2.45e-06)]_51 chrIV:667790-668257 8.42e-07 43_[+1(1.26e-10)]_36 chrXII:187227-187576 8.47e-01 100 chrII:5813-7051 5.73e-05 56_[+3(3.50e-09)]_23 chrVII:736183-736658 2.24e-05 10_[-1(2.05e-09)]_69 chrIV:1243124-1243338 4.50e-01 100 chrXV:671003-671698 9.66e-02 23_[+3(8.62e-05)]_56 chrV:441798-442680 4.14e-01 100 chrXIII:302745-303196 6.88e-01 100 chrIX:438476-439887 9.05e-01 100 chrX:690557-690657 7.07e-02 30_[-2(8.80e-05)]_49 chrXIII:650758-652956 6.75e-01 100 chrVII:930745-931222 5.45e-10 29_[+1(8.39e-10)]_14_[-2(3.16e-07)]_\ 15 chrVIII:145957-146449 7.41e-01 100 chrIV:359346-359834 2.66e-05 41_[+2(4.66e-09)]_38 chrII:642845-643282 1.52e-09 3_[+1(1.90e-06)]_[-3(1.54e-10)]_55 chrIV:636143-636431 4.06e-01 100 chrXIII:756322-756699 8.41e-01 100 chrXVI:135196-135850 4.83e-01 100 chrXVI:209119-210480 6.37e-01 100 chrXIII:768156-768635 1.97e-11 33_[+1(7.16e-10)]_16_[-2(4.66e-09)]_\ 9 chrX:58928-59028 6.16e-05 20_[-2(1.66e-08)]_59 chrVII:544392-544925 8.78e-03 14_[-2(2.45e-06)]_65 chrIV:1301550-1302567 7.93e-01 100 chrXIII:23730-26517 4.50e-01 100 chrXVI:856755-857154 2.38e-11 2_[+2(4.66e-09)]_16_[-1(7.16e-10)]_\ 40 chrXIII:731947-733522 3.86e-01 100 chrIX:0-263 7.46e-01 100 chrXV:161099-162092 9.07e-02 100 chrVIII:466760-467209 1.90e-01 100 chrXI:617705-619274 1.02e-01 100 chrX:348839-348939 1.10e-01 100 chrXIV:602109-602564 4.31e-13 30_[+2(2.14e-10)]_17_[-1(1.26e-10)]_\ 11 chrXIII:379009-379626 3.95e-04 45_[+1(4.76e-08)]_34 chrIV:1080454-1080998 8.44e-01 100 chrXIV:6482-7293 5.00e-02 33_[-2(5.94e-05)]_46 chrX:422711-422811 1.59e-04 33_[-1(2.79e-07)]_24_[+1(6.53e-05)]_\ 1 chrXV:232025-232384 1.13e-01 100 chrVII:592289-593037 6.57e-01 100 chrV:363644-364028 3.63e-01 100 chrV:110539-110874 9.26e-01 100 chrXV:287505-287720 9.72e-02 100 chrVI:4462-6139 9.60e-03 26_[+2(2.60e-06)]_53 chrXIV:102479-102994 1.65e-09 34_[+2(3.92e-09)]_17_[-1(1.05e-07)]_\ 7 chrV:268724-270688 1.97e-01 100 chrX:745164-745264 2.21e-03 39_[+2(8.77e-07)]_40 chrXV:925162-925529 9.39e-01 100 chrVIII:125875-127771 8.22e-01 100 chrVII:422891-423522 1.35e-02 18_[-1(2.47e-05)]_61 chrXII:11003-11984 4.86e-01 100 chrXV:866523-868136 9.27e-01 100 chrVII:400781-401768 5.38e-02 100 chrVII:310460-312654 2.95e-01 100 chrXII:489283-489610 4.15e-01 100 chrVII:882092-884598 2.79e-01 100 chrXIV:546947-547419 2.76e-06 32_[-1(4.40e-10)]_47 chrXVI:280562-283221 8.52e-01 100 chrX:541325-541425 3.36e-04 11_[-1(2.36e-07)]_68 chrXII:1028187-1028612 5.84e-01 100 chrX:396525-396625 5.45e-10 30_[+1(8.39e-10)]_14_[-2(3.16e-07)]_\ 14 chrIII:127501-127920 2.56e-05 60_[+2(3.92e-09)]_19 chrXII:201679-202934 3.11e-01 100 chrIII:177037-178799 5.94e-01 100 chrXII:734600-734995 7.36e-07 59_[+2(2.14e-10)]_20 chrVI:191314-191802 3.33e-08 14_[+1(2.77e-06)]_44_[-2(1.88e-09)] chrVI:63959-65380 4.15e-01 100 chrXVI:645264-646270 8.23e-01 100 chrXV:281943-282524 2.37e-06 20_[-1(8.39e-10)]_59 chrXIII:797925-798239 5.68e-01 100 chrV:85092-86934 8.87e-01 100 chrVII:405286-405787 8.98e-06 24_[-1(2.05e-09)]_55 chrII:135946-136381 1.27e-01 100 chrVII:73654-74227 2.06e-03 53_[+2(2.75e-06)]_26 chrIV:490725-492662 5.91e-01 100 chrI:229151-230195 6.27e-03 22_[-2(2.60e-06)]_57 chrXVI:453102-454049 4.72e-01 100 chrIV:1524089-1525677 4.53e-03 24_[-2(2.60e-06)]_55 chrVIII:48189-48562 6.57e-01 100 chrV:443065-443505 2.05e-06 14_[-2(2.14e-10)]_65 chrV:288228-288746 8.97e-18 15_[+1(2.45e-06)]_3_[+3(4.24e-13)]_\ 1_[-2(1.88e-09)]_18 chrXV:1091102-1091290 5.34e-01 100 chrXV:353883-354323 1.42e-04 34_[-2(1.66e-08)]_45 chrXIII:168619-169060 3.15e-08 10_[+2(3.46e-07)]_32_[-1(4.76e-08)]_\ 16 chrXV:382915-383485 5.69e-01 100 chrX:607791-607891 4.80e-01 100 chrXVI:435531-436173 5.07e-01 100 chrXVI:585788-586477 5.99e-01 100 chrII:796252-799190 7.55e-01 100 chrXIII:826594-826919 3.08e-01 100 chrVI:210464-210889 3.15e-08 2_[+1(4.76e-08)]_32_[-2(3.46e-07)]_\ 24 chrV:225429-225726 7.36e-01 100 chrVII:479145-482983 6.05e-01 100 chrXIII:21-198 6.90e-01 100 chrVII:561405-561946 3.55e-11 46_[+1(4.56e-07)]_3_[+3(5.60e-11)]_\ 9 chrVII:794190-794599 1.57e-05 77_[+2(2.27e-09)]_2 chrII:544558-544844 5.70e-01 100 chrIV:893931-894424 1.81e-01 60_[+2(9.81e-05)]_19 chrXII:167761-168260 1.90e-13 17_[+3(5.60e-11)]_1_[-2(2.14e-10)]_\ 40 chrVII:1050201-1050632 2.80e-01 100 chrXII:605134-605625 4.35e-06 77_[-2(3.34e-08)]_2 chrVII:413345-413660 4.87e-01 100 chrV:151764-153287 7.43e-01 100 chrIX:68161-69826 2.40e-01 100 chrVII:726347-728183 6.18e-01 100 chrXI:74396-74935 7.90e-10 13_[+2(3.92e-09)]_17_[-1(1.05e-07)]_\ 28 chrXV:1027864-1029344 6.89e-01 100 chrXII:234549-234908 4.49e-01 100 chrX:542770-542870 2.76e-03 42_[-2(3.46e-07)]_37 chrXIII:372208-372731 2.84e-10 35_[+1(1.60e-08)]_17_[-2(1.66e-08)]_\ 6 chrXII:780594-781878 4.15e-01 100 chrII:347404-347896 1.50e-16 7_[+2(8.41e-10)]_2_[-3(3.99e-11)]_\ 11_[+1(1.11e-06)]_17 chrXV:968046-968458 5.38e-02 100 chrXIII:222642-224418 2.87e-01 100 chrXI:163311-164525 3.96e-01 100 chrIV:1016965-1017495 3.37e-06 36_[+1(8.39e-10)]_43 chrXII:83410-83585 2.39e-01 100 chrXV:167879-168463 3.80e-01 100 chrXII:687652-688160 2.84e-10 12_[+1(1.60e-08)]_17_[-2(1.66e-08)]_\ 29 chrVII:344158-345211 9.49e-01 100 chrI:138909-139359 1.97e-04 72_[+2(3.80e-07)]_7 chrVIII:388660-389204 3.00e-06 20_[+1(4.40e-10)]_59 chrXII:731910-732336 5.15e-08 21_[+2(6.78e-10)]_58 chrV:77526-79479 4.71e-02 100 chrVII:255166-255623 9.78e-02 59_[+3(8.88e-05)]_20 chrV:303788-306936 6.06e-01 100 chrXIII:861172-861475 5.38e-02 100 chrVIII:74647-76527 9.05e-02 100 chrXV:159261-160795 2.04e-01 100 chrXII:903371-904465 6.89e-01 100 chrV:250109-250516 2.32e-08 28_[+2(3.65e-06)]_15_[-1(2.71e-09)]_\ 15 chrXII:522148-523596 2.68e-01 100 chrXIV:374683-375123 2.84e-09 20_[+2(3.81e-08)]_34_[-1(3.48e-08)]_\ 4 chrIV:946136-946642 1.93e-04 30_[-1(4.76e-08)]_49 chrXI:645282-645842 6.69e-01 100 chrXV:407629-408244 2.19e-01 100 chrIV:434003-434553 6.53e-05 45_[+1(6.03e-09)]_34 chrX:120308-120408 7.42e-01 100 chrV:66742-69487 3.26e-01 100 chrXII:673110-674590 1.89e-01 100 chrXV:391513-392641 8.25e-01 100 chrXIII:407934-408874 6.23e-01 100 chrVII:786947-788775 7.48e-01 100 chrXI:83981-84433 1.95e-13 55_[+2(8.41e-10)]_2_[-3(3.99e-11)]_\ 1 chrXIII:504659-505221 7.45e-05 9_[+2(4.34e-08)]_70 chrIX:300047-300488 5.72e-11 20_[+1(2.64e-10)]_16_[-2(6.32e-08)]_\ 22 chrV:176857-177444 4.05e-06 39_[-1(8.39e-10)]_40 chrIII:142104-142982 7.84e-01 100 chrXII:468758-468996 9.55e-03 32_[+2(3.45e-06)]_47 chrXV:619174-624662 9.82e-03 45_[+2(2.90e-05)]_34 chrXII:636474-640250 9.69e-01 100 chrXI:490772-491275 1.50e-04 36_[-1(5.27e-08)]_43 chrVIII:147591-149329 7.69e-01 100 chrXI:322381-322919 7.80e-01 100 chrIV:721011-722931 4.45e-01 100 chrX:355146-355246 3.04e-08 17_[-1(2.05e-09)]_25_[+2(2.45e-06)]_\ 16 chrX:378157-378257 1.25e-05 50_[+2(1.66e-08)]_29 chrII:59816-61275 3.34e-01 100 chrII:301012-301746 7.48e-01 100 chrVII:291675-291971 9.24e-01 100 chrVIII:381433-383363 6.75e-01 100 chrXIV:173527-174697 1.79e-01 100 chrI:2-1346 5.32e-05 7_[+3(4.70e-09)]_72 chrXI:379434-379932 1.25e-05 51_[+2(1.66e-08)]_28 chrXV:79563-80170 1.80e-01 100 chrVIII:562253-562584 5.40e-01 100 chrXII:47494-49150 2.08e-01 100 chrXIII:540145-541027 2.27e-01 100 chrV:406616-409466 2.27e-01 100 chrXI:665522-666805 9.60e-03 23_[-2(2.60e-06)]_56 chrXVI:406168-407789 7.63e-01 100 chrXII:280828-283906 1.49e-01 100 chrIX:257327-258156 3.34e-01 100 chrIII:315628-316619 8.90e-01 100 chrXIII:320971-321330 9.04e-06 56_[+1(7.16e-10)]_23 chrV:311506-312302 8.92e-01 100 chrXIV:493719-495750 4.79e-01 100 chrX:73367-73467 3.17e-02 9_[-1(8.89e-05)]_70 chrXI:260492-260917 7.94e-01 100 chrXVI:575819-576674 2.26e-01 100 chrXV:444589-446181 8.44e-01 100 chrI:141620-143693 1.54e-01 100 chrVII:440463-443129 3.39e-01 100 chrX:606257-606357 4.18e-01 100 chrIII:66759-68650 6.56e-02 100 chrXIV:229617-231114 4.60e-01 100 chrIV:1256879-1257291 7.67e-04 18_[-2(8.12e-07)]_61 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************