Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.015225
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.056874
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.072245
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.012759
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background
Finished invoke:
  name: bg  status: 0  time: 0.013061
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 849.414008
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 36.481018
Invoking:
  centrimo -seqlen 622 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.133562
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.22838
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background -primary SSGGRATCGAACCSSBGAYCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.510952
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background -primary WGSBYNYDTGGYBYAGTGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.491982
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background -primary WGATTWHSAGTCWKRCGCCYT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.392466
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background -primary AAAAADAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.39456
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background -primary CCHTAACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.24526
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background -primary CTACYGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.213757
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background -primary CCGTGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.203825
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background -primary GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.196435
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background -primary GACAAS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.309766
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background --motif SSGGRATCGAACCSSBGAYCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.276532
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background --motif WGSBYNYDTGGYBYAGTGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.267874
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background --motif WGATTWHSAGTCWKRCGCCYT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.27529
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background --motif AAAAADAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.181936
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background --motif CCHTAACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.179932
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background --motif CTACYGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.177338
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background --motif CCGTGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.176379
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background --motif GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.179199
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background --motif GACAAS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.159732
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.140518
Done