Database and Motifs High-scoring Motif Occurences Debugging Information


FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa
Database contains 558 sequences, 456567 residues

MOTIFS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
GTTCGABY 8 GTTCGATT
AAAAADAA 8 AAAAAAAA
CCHTAACC 8 CCTTAACC
AGTGGTW 7 AGTGGTT
CTACYGA 7 CTACCGA
CCGTGSA 7 CCGTGGA
CGCSTTA 7 CGCCTTA
GTGATAGY 8 GTGATAGT
GACAAS 6 GACAAC

Random model letter frequencies (/srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background):
A 0.314 C 0.186 G 0.186 T 0.314

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
AAAAADAA DREME-2 chrV + 13574 13581 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIII - 14776 14783 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII + 23828 23835 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrII - 36504 36511 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrII + 45123 45130 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrII - 45216 45223 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 48874 48881 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 48882 48889 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 48940 48947 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV - 54012 54019 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrII - 60935 60942 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 65461 65468 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV + 67470 67477 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXI - 67763 67770 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXI - 67770 67777 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIX + 68129 68136 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV + 69057 69064 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV + 69133 69140 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrI + 73288 73295 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrX - 73838 73845 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 74352 74359 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrX - 74612 74619 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVIII + 74969 74976 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIII + 78513 78520 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXV - 79975 79982 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIII + 82249 82256 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV - 83631 83638 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV - 83800 83807 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII - 84120 84127 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV + 86182 86189 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV - 86378 86385 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV + 86786 86793 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXV + 87634 87641 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXV + 87913 87920 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrII - 88122 88129 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIV - 89320 89327 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrII + 89838 89845 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrX + 90203 90210 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII + 91912 91919 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII - 92656 92663 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV - 100213 100220 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIV + 102959 102966 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVIII - 104584 104591 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXV + 110882 110889 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXV - 113988 113995 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV + 117633 117640 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV + 118181 118188 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrX + 121753 121760 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII - 122342 122349 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII + 123751 123758 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIII - 127801 127808 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII + 131727 131734 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII + 131807 131814 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVIII - 134457 134464 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV + 135321 135328 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV + 135416 135423 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI + 135446 135453 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXI - 140776 140783 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXI + 140824 140831 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrI - 142295 142302 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrI + 142529 142536 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIII + 142659 142666 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII + 147339 147346 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII - 148781 148788 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVIII - 149131 149138 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 149292 149299 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrX + 156796 156803 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrX + 157848 157855 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVI - 158141 158148 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXI + 158684 158691 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXV + 160646 160653 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVI - 162300 162307 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 167922 167929 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 167928 167935 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII - 169055 169062 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI + 173320 173327 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV - 176938 176945 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIII + 178442 178449 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrI - 181261 181268 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIX - 183248 183255 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIX + 183717 183724 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI + 188714 188721 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI - 188935 188942 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI - 188949 188956 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVI + 191501 191508 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrX + 197302 197309 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrII + 197619 197626 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIX - 197673 197680 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXI - 203071 203078 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 205365 205372 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV - 207208 207215 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI + 210181 210188 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV + 221201 221208 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVI + 221880 221887 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV - 222399 222406 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVI + 223102 223109 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVI + 223125 223132 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVI + 223137 223144 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII - 225349 225356 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII - 226144 226151 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXV + 226516 226523 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVI - 226829 226836 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXV - 227550 227557 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIII - 227813 227820 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 228665 228672 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII - 228760 228767 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV + 230465 230472 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrX - 234015 234022 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 241597 241604 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII - 241740 241747 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII - 254089 254096 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 254099 254106 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIX - 254435 254442 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII - 263416 263423 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII - 268061 268068 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII + 268662 268669 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVI - 269764 269771 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV - 270450 270457 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXV - 274776 274783 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI + 281529 281536 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXV - 282235 282242 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 282607 282614 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXI + 283442 283449 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXI + 284526 284533 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 287224 287231 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV + 288543 288550 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII - 290874 290881 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVIII + 296681 296688 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII - 297208 297215 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII - 297471 297478 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXI - 302791 302798 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI - 302889 302896 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXI - 303025 303032 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 311252 311259 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 312131 312138 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIX + 316112 316119 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIX + 316464 316471 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 320096 320103 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI + 338828 338835 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 344106 344113 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV - 358186 358193 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV - 359287 359294 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV - 359676 359683 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV - 359813 359820 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII - 363137 363144 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 369560 369567 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 369586 369593 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII - 370956 370963 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXI + 382257 382264 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVIII - 385545 385552 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrX + 391752 391759 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrX + 396716 396723 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrX + 396886 396893 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII - 401289 401296 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI - 404883 404890 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV - 410671 410678 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV + 411326 411333 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV - 411548 411555 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIV - 415051 415058 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIV - 415085 415092 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIV - 415093 415100 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrII - 415779 415786 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII - 420367 420374 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII - 420739 420746 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII - 420834 420841 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrX - 423013 423020 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV + 423553 423560 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV + 431020 431027 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII + 433707 433714 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV + 433993 434000 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV + 434189 434196 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV + 434530 434537 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV + 435743 435750 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI + 435884 435891 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI + 436221 436228 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV + 438076 438083 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXV - 438782 438789 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIV - 443320 443327 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 448642 448649 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII - 448765 448772 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVIII + 455855 455862 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII - 459800 459807 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVIII - 462252 462259 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVIII - 467270 467277 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV - 469584 469591 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrII + 477332 477339 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII - 479785 479792 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII + 480613 480620 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII - 482336 482343 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXV - 487242 487249 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV + 490881 490888 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV - 492238 492245 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIV - 494208 494215 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIV - 500566 500573 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII - 505302 505309 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXI - 518069 518076 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV - 522953 522960 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV - 522959 522966 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrV - 522995 523002 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII - 523014 523021 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrX + 523915 523922 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV - 525253 525260 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV - 525265 525272 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrX - 531905 531912 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII - 541923 541930 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 544562 544569 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII - 555765 555772 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 556007 556014 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVIII - 556038 556045 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIV + 560594 560601 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 561473 561480 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 561572 561579 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIV + 569858 569865 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI - 582134 582141 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIV + 586135 586142 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 589225 589232 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIV - 602385 602392 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrX - 607860 607867 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrX + 608970 608977 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI - 627561 627568 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIV - 632776 632783 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 636418 636425 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 636439 636446 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 636531 636538 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII - 636565 636572 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII - 636571 636578 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrII + 642999 643006 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 649092 649099 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 649112 649119 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrX - 651564 651571 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI - 653870 653877 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI - 654553 654560 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII - 673891 673898 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXV + 678989 678996 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrII + 681241 681248 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrII + 681321 681328 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrII + 681530 681537 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrII + 681999 682006 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrII + 682010 682017 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII - 687405 687412 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 687481 687488 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 687979 687986 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 700316 700323 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI - 700360 700367 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI - 700404 700411 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 700941 700948 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrX + 703383 703390 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 707049 707056 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII - 711037 711044 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII - 713025 713032 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 713326 713333 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIV - 725943 725950 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII - 731263 731270 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI - 732046 732053 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 738886 738893 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI - 744388 744395 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII + 753929 753936 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII + 762505 762512 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI + 775756 775763 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXV - 779825 779832 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXV - 780540 780547 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 780870 780877 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 795524 795531 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 805682 805689 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII - 805794 805801 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII - 807338 807345 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 807879 807886 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 807896 807903 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXIII - 808148 808155 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII - 819066 819073 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI + 819429 819436 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 819441 819448 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI - 857065 857072 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 857309 857316 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXV - 866779 866786 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 876308 876315 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII - 876466 876473 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI - 880173 880180 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXVI + 880275 880282 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 882768 882775 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV - 884569 884576 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII - 898319 898326 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXV + 900786 900793 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII - 903555 903562 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII - 919984 919991 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 924785 924792 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 930934 930941 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 932145 932152 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV - 980898 980905 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 1000381 1000388 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 1000398 1000405 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrVII + 1004136 1004143 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXV - 1004440 1004447 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXV - 1004728 1004735 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 1012164 1012171 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV - 1013729 1013736 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV + 1017197 1017204 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII - 1017787 1017794 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXII + 1018061 1018068 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXV + 1027776 1027783 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrXV - 1028941 1028948 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV + 1095137 1095144 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV - 1151538 1151545 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV - 1278696 1278703 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV - 1301053 1301060 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV + 1305316 1305323 5.6e-05 0.16 AAAAAGAA
AAAAADAA DREME-2 chrIV + 1356057 1356064 5.6e-05 0.16 AAAAAGAA
DEBUGGING INFORMATION

Command line: 

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background --motif AAAAADAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa

Settings: 


  

    output_directory = /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/fimo_out_4
    MEME file name = /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/dreme_out/dreme.xml
    sequence file name = /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/BY4742--CAT8.fa
  
  

    background file name = /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAT8/background
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = true
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.

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