Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.013859 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.056177 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.070405 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.012839 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background Finished invoke: name: bg status: 0 time: 0.012372 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 758.173298 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 54.469197 Invoking: centrimo -seqlen 512 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.165987 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.826542 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background -primary BSGGRATCGAACCSVKGAYCTYHYGVTTR /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.65716 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background -primary BDTRGYCBARTKGKTARMGCGNYMSRYTY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.659189 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background -primary CCCATDC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.360369 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background -primary CABACGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.316914 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.29265 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background -primary AARAAAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.527214 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background -primary GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.255277 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background -primary GGCGAAAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.229693 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background -primary GCGCCW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.295141 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background -primary GAGACCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.279298 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background -primary AARGCGTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.229365 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background -primary CKTTGGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.301222 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background -primary GCTACCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.320385 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background -primary ACACTATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.230109 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background --motif BSGGRATCGAACCSVKGAYCTYHYGVTTR /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa Finished invoke: name: fimo1 status: 0 time: 0.260223 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background --motif BDTRGYCBARTKGKTARMGCGNYMSRYTY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa Finished invoke: name: fimo2 status: 0 time: 0.259629 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background --motif CCCATDC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa Finished invoke: name: fimo3 status: 0 time: 0.151449 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background --motif CABACGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa Finished invoke: name: fimo4 status: 0 time: 0.151768 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa Finished invoke: name: fimo5 status: 0 time: 0.152249 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background --motif AARAAAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa Finished invoke: name: fimo6 status: 0 time: 0.136238 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background --motif GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa Finished invoke: name: fimo7 status: 0 time: 0.152823 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background --motif GGCGAAAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa Finished invoke: name: fimo8 status: 0 time: 0.152623 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background --motif GCGCCW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa Finished invoke: name: fimo9 status: 0 time: 0.148957 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background --motif GAGACCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa Finished invoke: name: fimo10 status: 0 time: 0.152449 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background --motif AARGCGTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa Finished invoke: name: fimo11 status: 0 time: 0.155669 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background --motif CKTTGGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa Finished invoke: name: fimo12 status: 0 time: 0.155948 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background --motif GCTACCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa Finished invoke: name: fimo13 status: 0 time: 0.153074 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background --motif ACACTATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/BY4742--CAD1.fa Finished invoke: name: fimo14 status: 0 time: 0.153426 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/summary.tsv Finished invoke: name: summary status: 0 time: 0.16531 Done