******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:1-1248 1.0000 100 chrI:71818-73615 1.0000 100 chrI:81883-82337 1.0000 100 chrI:138929-139379 1.0000 100 chrI:166031-166632 1.0000 100 chrI:180916-181479 1.0000 100 chrI:182332-182804 1.0000 100 chrI:229098-230196 1.0000 100 chrII:9351-9963 1.0000 100 chrII:36149-36633 1.0000 100 chrII:44958-45403 1.0000 100 chrII:60489-61309 1.0000 100 chrII:87956-88574 1.0000 100 chrII:88962-90001 1.0000 100 chrII:165045-165448 1.0000 100 chrII:167770-168281 1.0000 100 chrII:181296-181663 1.0000 100 chrII:197246-197891 1.0000 100 chrII:226838-227391 1.0000 100 chrII:266160-266692 1.0000 100 chrII:326553-327115 1.0000 100 chrII:332267-332860 1.0000 100 chrII:347391-348011 1.0000 100 chrII:350597-351088 1.0000 100 chrII:405579-406225 1.0000 100 chrII:415474-415917 1.0000 100 chrII:476865-477743 1.0000 100 chrII:504473-504737 1.0000 100 chrII:544520-544850 1.0000 100 chrII:592351-593326 1.0000 100 chrII:604048-607111 1.0000 100 chrII:642852-643308 1.0000 100 chrII:644948-645413 1.0000 100 chrII:680354-682286 1.0000 100 chrIII:1-1787 1.0000 100 chrIII:11073-11573 1.0000 100 chrIII:13992-16901 1.0000 100 chrIII:58732-59039 1.0000 100 chrIII:68416-68647 1.0000 100 chrIII:78428-78863 1.0000 100 chrIII:82256-82767 1.0000 100 chrIII:123370-123833 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chrXVI:520017-520548 1.0000 100 chrXVI:559794-560509 1.0000 100 chrXVI:572003-572629 1.0000 100 chrXVI:581823-582393 1.0000 100 chrXVI:622293-622854 1.0000 100 chrXVI:627343-627678 1.0000 100 chrXVI:653831-655051 1.0000 100 chrXVI:689317-689849 1.0000 100 chrXVI:699872-700673 1.0000 100 chrXVI:731622-732316 1.0000 100 chrXVI:744053-744584 1.0000 100 chrXVI:768977-769510 1.0000 100 chrXVI:775630-776065 1.0000 100 chrXVI:794423-795459 1.0000 100 chrXVI:810452-810876 1.0000 100 chrXVI:819151-819841 1.0000 100 chrXVI:856704-857129 1.0000 100 chrXVI:860136-860690 1.0000 100 chrXVI:879898-880590 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 537 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 53700 N= 537 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.295 C 0.205 G 0.205 T 0.295 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--CAD1/background): A 0.313 C 0.187 G 0.187 T 0.313 ******************************************************************************** ******************************************************************************** MOTIF BSGGRATCGAACCSVKGAYCTYHYGVTTR MEME-1 width = 29 sites = 128 llr = 2622 E-value = 8.1e-642 ******************************************************************************** -------------------------------------------------------------------------------- Motif BSGGRATCGAACCSVKGAYCTYHYGVTTR MEME-1 Description -------------------------------------------------------------------------------- Simplified A :13:55:::aa::13127:1:132:4115 pos.-specific C 44:::2:8:::a8531::6734543211: probability G 357a42::a::::44581:1:::273123 matrix T 3::::1a2::::21:3:2417423::771 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * * ** * Relative 1.5 * ****** * * Entropy 1.2 ** ******* * * * (29.6 bits) 1.0 **** ******* * ** * 0.7 ***** ******** * *** * 0.5 ***** **************** ***** 0.2 ***************************** 0.0 ----------------------------- Multilevel CGGGAATCGAACCCGGGACCTCCCGATTA consensus GCA GG T GATA T CTATCG G sequence T C T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATCGAACCSVKGAYCTYHYGVTTR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIV:569675-570147 + 15 6.80e-13 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrXII:1051856-1052383 + 11 6.80e-13 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrVII:738866-739531 - 10 6.80e-13 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGG chrV:551024-551588 + 38 6.80e-13 TTGGTCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrIX:210478-210952 - 36 6.80e-13 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrIV:667772-668261 + 50 6.80e-13 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrII:197246-197891 - 12 6.80e-13 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrXII:214654-215186 + 22 9.52e-13 ATGGACGCAA CCGGAATCGAACCGATGACCTCTTCCTTG CAAGGGAAGC chrV:311734-312326 + 52 9.52e-13 TTGGACGCAA CCGGAATCGAACCGATGACCTCTTCCTTG CAAGGGAAGC chrI:166031-166632 - 21 9.52e-13 TTGGACGCAA CCGGAATCGAACCGATGACCTCTTCCTTG CAAGGGAAGC chrXVI:860136-860690 - 49 1.32e-12 CTGCGCAAGC CCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrXVI:572003-572629 - 36 1.32e-12 TTGCGCAAGC CCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrXV:281947-282449 - 49 1.32e-12 ATGCGCAAGC CCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrX:531563-532205 - 27 1.32e-12 CTGCGCAAGC CCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrVII:930717-931239 + 34 1.32e-12 ATGCGCAAGC CCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrVI:180662-181274 + 65 1.32e-12 CTGCGCAAGC CCGGAATCGAACCGGGGGCCCAACGATGG CAACGTT chrIV:992595-993091 - 72 1.32e-12 . CCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrIV:83316-83816 - 65 1.32e-12 CGCAAGC CCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrIII:142400-143008 + 56 1.32e-12 ATGCGCAAGC CCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrXVI:581823-582393 - 39 3.92e-12 AAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrXIII:480407-480925 + 14 3.92e-12 AAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrXI:202808-203293 - 34 3.92e-12 AAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrX:414759-415259 - 42 3.92e-12 TAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrVII:876114-876701 - 72 3.92e-12 . GGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrVII:122045-122654 - 5 3.92e-12 TAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTA AGAG chrV:135167-135724 + 39 3.92e-12 AAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrIX:299973-300536 + 33 3.92e-12 TAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrIV:1352269-1352754 + 14 3.92e-12 TAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrIII:123370-123833 + 35 3.92e-12 TGGGGCGAGC CGGGACTCGAACCCGGGACCTCCCGCACC CTAAGCGAGA chrXVI:209969-210531 + 1 4.55e-12 . GGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrXIII:290532-291164 - 37 4.55e-12 ACTCCGCTAC GGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrX:115639-116245 + 56 4.55e-12 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrVII:541614-542175 - 40 4.55e-12 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrV:487015-487677 + 44 4.55e-12 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrV:176872-177419 - 38 4.55e-12 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrIV:1016972-1017518 + 21 4.55e-12 ACTCCGAAGC GGGGAGTCGAACCCCGGTCTCCACGGTGA GAACGTGATG chrIII:82256-82767 + 10 4.55e-12 CTCCGATAC GGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrII:644948-645413 - 71 4.55e-12 C GGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrXIII:131590-132118 + 30 9.32e-12 GCACTCACGA TGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrXI:162262-162760 + 35 9.32e-12 ACACTCACGA TGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrX:374172-374846 + 56 9.32e-12 GCACTCACGA TGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrX:355133-355743 - 20 9.32e-12 GCACTCACGA TGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrVII:828455-829008 + 51 9.32e-12 GCACTCACGA TGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrVII:736140-736645 - 32 9.32e-12 ACACTCACGA TGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrVII:405258-405811 - 20 9.32e-12 GCACTCACGA TGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrII:405579-406225 - 60 9.32e-12 GCACTCACGA TGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrXVI:856704-857129 - 71 1.41e-11 T CCGGAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrXIII:768137-768660 + 30 1.41e-11 TTGGACGAGT CCGGAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrXIII:320975-321381 + 28 1.41e-11 ATGGACGAGT CCGGAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrXII:656681-657215 + 45 1.41e-11 TTGGACGAGT CCGGAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrVIII:145981-146478 + 72 1.41e-11 TTGGACGAGT CCGGAATCGAACCGGAGACCTCTCCCATG chrVII:774107-774675 - 43 1.41e-11 TTGGACGAGT CCGGAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrIV:410138-410714 - 38 1.41e-11 TTGGACGAGT CCGGAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrXV:980458-981071 - 36 2.39e-11 AGGGGCGAGC TGGGAATTGAACCCAGGGCCTCTCGCATG CTTTGTTCCT chrXV:300860-301440 - 61 2.39e-11 GGGGGCGAGC TGGGAATTGAACCCAGGGCCTCTCGCATG CTTTGTCCCC chrXIV:546922-547428 - 34 2.39e-11 CGGGGCGAGC TGGGAATTGAACCCAGGGCCTCTCGCATG CTTTGTCTTC chrXII:92299-92915 - 56 2.39e-11 AGGGGCGAGC TGGGAATTGAACCCAGGGCCTCTCGCATG CTTTGTCTTC chrVIII:388677-389215 + 6 2.39e-11 CGAGC TGGGAATTGAACCCAGGGCCTCTCGCATG CTTTGTCTTC chrXI:46424-47040 + 62 3.52e-11 ATGCCCTCTG TGGGAATTGAACCCACGATCCCCGCATTA CGAGTGCGAT chrVIII:475500-475917 + 57 4.51e-11 ATGTTCCAAC CGAGGATCGAACTCGGGACCTTTGCCGTG TGAAGGCAAC chrIV:1075294-1075762 + 3 4.51e-11 AC CGAGGATCGAACTCGGGACCTTTGCCGTG TGAAGGCAAC chrXV:663504-664113 + 63 5.10e-11 ACGATTTCGC CCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGA chrXIII:586399-586919 + 36 5.10e-11 ATGATTTCGC CCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXIII:420313-420890 + 46 5.10e-11 ATGATTTCGC CCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXIII:372174-372755 + 40 5.10e-11 ATGATTTCGC CCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXII:687644-688177 + 8 5.10e-11 ATTTCGC CCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXI:379457-379977 - 49 5.10e-11 TTGATTTCGC CCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXI:307908-308436 + 31 5.10e-11 TTGATTTCGC CCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrVIII:134062-134672 - 38 5.10e-11 AAGGTCCTAC CCGGATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrVIII:85040-85602 + 36 5.10e-11 TTGATTTCGC CCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrVII:823265-823727 - 72 5.10e-11 . CCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrV:469232-469759 - 48 5.10e-11 ATGATTTCGC CCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrV:250092-250552 - 48 5.10e-11 AAGGTCCTAC CCGGATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrII:350597-351088 - 69 5.10e-11 TAC CCGGATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrX:538344-538828 - 53 5.77e-11 ACGTTCCGTA CGGGACTCGAACCCGCAGTCTTCTCCTTA GGAGGGAGAC chrV:130857-131384 + 21 9.28e-11 TAGGTCTTAC CCGGATTCGAACCGGGGTTGTTCGGATCA AAACCGAAAG chrXV:353809-354331 + 30 1.17e-10 ATGCTTCCAA TCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrXIV:104602-105148 - 15 1.17e-10 ATGCTTCCAA TCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrVIII:115888-116417 + 14 1.17e-10 ATGCTTCCAA TCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrIX:325532-326073 - 31 1.17e-10 TTGCTTCCAA TCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrIX:174794-175318 - 60 1.17e-10 TTGCTTCCAA TCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrIV:433989-434575 + 41 1.17e-10 ATGCTTCCAA TCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrII:266160-266692 - 37 1.17e-10 ATGCTTCCAA TCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrIV:488496-489127 + 45 1.31e-10 CTGATCCAAC CGAGGTTCGAACTCGGGATCTTCGCCGTG TAAAGGCGAC chrII:326553-327115 + 17 1.31e-10 TTGATCCAAC CGAGGTTCGAACTCGGGATCTTCGCCGTG TAAAGGCGAC chrXIV:96030-96544 + 13 3.15e-10 TTGAGCGGTA CGAGAATCGAACCCGTGTCCCCACCTTGG AAGGGTGGGA chrVII:779390-779902 - 54 3.15e-10 TTGAGCGGTA CGAGAATCGAACCCGTGTCCCCACCTTGG AAGGGTGGGA chrXVI:768977-769510 + 23 9.51e-10 ACTCCTCATA GGGGGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrXV:438431-438972 - 50 9.51e-10 ACTCCTCATA GGGGGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrXII:875170-875669 - 65 9.51e-10 CCTCATA GGGGGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrXI:578735-579292 - 60 9.51e-10 ACTCCTCATA GGGGGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrX:233664-234278 - 53 1.26e-09 TCTTCCCCGC CAGGACTCGAACCTGGAATCTCCTGGTTC GTAGCCAGAC chrXV:976187-976702 - 62 1.39e-09 TTGCTCCAGG GGAGGTTCGAACTCTCGACCTTCAGATTA TGAGACTGAC chrX:422665-423255 - 62 1.39e-09 GTGCTCCAGG GGAGGTTCGAACTCTCGACCTTCAGATTA TGAGACTGAC chrXV:487221-487748 - 41 1.82e-09 ACGACCCCAG TGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrXIV:632417-632893 - 30 1.82e-09 ACGACCCCAG TGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrXIV:102485-103083 - 18 1.82e-09 ACGACCCCAG TGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrXII:975787-976287 + 5 1.82e-09 CCAG TGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrXI:74366-74942 - 56 1.82e-09 GCGACCCCAG TGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrVII:730923-731420 - 52 1.82e-09 ACGACCCCAG TGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrXVI:55834-56502 + 60 2.60e-09 TTGAAACGGA CAGGAATTGAACCTGCAACCCTTCGATTG CAATCTTATT chrXIII:378951-379638 + 68 2.60e-09 TTGAAACGGA CAGGAATTGAACCTGCAACCCTTCGATTG CAAT chrXVI:622293-622854 + 26 3.98e-09 ATGCGAATTC TGTGGATCGAACACAGGACCTCCAGATAA CTTGACCGAA chrVIII:237667-238141 + 3 3.98e-09 TC TGTGGATCGAACACAGGACCTCCAGATAA CTTGACCGAA chrXII:374156-374710 - 7 7.02e-09 TCTTCCCCGC CAGGACTTGAACCTGGAATCTTCTGGTTC GTAGCC chrXI:490727-491280 - 50 7.02e-09 TCTTCCCCGC CAGGACTTGAACCTGGAATCTTCTGGTTC GTAGCCAGAC chrV:492186-492626 + 5 7.02e-09 CCGC CAGGACTTGAACCTGGAATCTTCTGGTTC GTAGCCAGAC chrIV:619722-620283 + 26 7.02e-09 TCTTCCCCGC CAGGACTTGAACCTGGAATCTTCTGGTTC GTAGCCAGAC chrXVI:744053-744584 - 50 1.20e-08 TTGCCACCTG TCAGAATTGAACTAACGACCTTTGCATTA CAAGTGCAAC chrXIII:837683-838241 - 67 1.20e-08 CCGGG GGCGAGTCGAACGCCCGATCTCAAGATTT CGTAGTGGTA chrXIII:168576-169082 - 67 1.20e-08 CCGGG GGCGAGTCGAACGCCCGATCTCAAGATTT CGTAGTGGTA chrIV:946108-946627 - 46 1.20e-08 ATCTCCCGGG GGCGAGTCGAACGCCCGATCTCAAGATTT CGTAGTGATA chrXVI:338660-339141 + 7 1.50e-08 CGCCGC TCGGTTTCGATCCGAGGACATCAGGGTTA TGAGCCCTGC chrXV:710007-710508 - 28 1.50e-08 TTAGCGCCGC TCGGTTTCGATCCGAGGACATCAGGGTTA TGAGCCCTGC chrX:517612-518102 + 15 1.50e-08 TTAGCGCCGC TCGGTTTCGATCCGAGGACATCAGGGTTA TGAGCCCTGC chrIV:1095111-1095716 + 16 1.61e-08 ATGCGAACTC TGTGGATCGAACACAGGACCTCCAGATAT CTTGACCAAA chrXVI:435606-436209 + 45 3.65e-08 AAGCTCGCAC TCAGGATCGAACTAAGGACCAACAGATTT GCAATCTGCT chrVII:706924-707356 + 27 3.65e-08 AAGCTCGCAC TCAGGATCGAACTAAGGACCAACAGATTT GCAATCTGCT chrXIII:463302-463919 - 28 3.89e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrXII:426900-427463 - 35 3.89e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrX:541297-541801 - 43 3.89e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrVII:544331-544889 + 26 3.89e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrIX:336125-336644 + 24 3.89e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrXIII:362853-363344 - 50 9.13e-08 ATGCCATCTC CTAGAATCGAACCAGGGTTTCATCGGCCA CAACGATGTG chrXI:313167-313678 + 38 9.13e-08 ATGCCATCTC CTAGAATCGAACCAGGGTTTCATCGGCCA CAACGATGTG chrVII:319571-320136 - 12 9.13e-08 ATGCCATCTC CTAGAATCGAACCAGGGTTTCATCGGCCA CAACGATGTG chrVII:110396-110925 + 24 9.13e-08 TTGCCATCTC CTAGAATCGAACCAGGGTTTCATCGGCCA CAACGATGTG chrV:434359-434804 + 19 9.13e-08 ATGCCATCTC CTAGAATCGAACCAGGGTTTCATCGGCCA CAACGATGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATCGAACCSVKGAYCTYHYGVTTR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:569675-570147 6.8e-13 14_[+1]_57 chrXII:1051856-1052383 6.8e-13 10_[+1]_61 chrVII:738866-739531 6.8e-13 9_[-1]_62 chrV:551024-551588 6.8e-13 37_[+1]_34 chrIX:210478-210952 6.8e-13 35_[-1]_36 chrIV:667772-668261 6.8e-13 49_[+1]_22 chrII:197246-197891 6.8e-13 11_[-1]_60 chrXII:214654-215186 9.5e-13 21_[+1]_50 chrV:311734-312326 9.5e-13 51_[+1]_20 chrI:166031-166632 9.5e-13 20_[-1]_51 chrXVI:860136-860690 1.3e-12 48_[-1]_23 chrXVI:572003-572629 1.3e-12 35_[-1]_36 chrXV:281947-282449 1.3e-12 48_[-1]_23 chrX:531563-532205 1.3e-12 26_[-1]_45 chrVII:930717-931239 1.3e-12 33_[+1]_38 chrVI:180662-181274 1.3e-12 64_[+1]_7 chrIV:992595-993091 1.3e-12 71_[-1] chrIV:83316-83816 1.3e-12 64_[-1]_7 chrIII:142400-143008 1.3e-12 55_[+1]_16 chrXVI:581823-582393 3.9e-12 38_[-1]_33 chrXIII:480407-480925 3.9e-12 13_[+1]_58 chrXI:202808-203293 3.9e-12 33_[-1]_38 chrX:414759-415259 3.9e-12 41_[-1]_30 chrVII:876114-876701 3.9e-12 71_[-1] chrVII:122045-122654 3.9e-12 4_[-1]_67 chrV:135167-135724 3.9e-12 38_[+1]_33 chrIX:299973-300536 3.9e-12 32_[+1]_39 chrIV:1352269-1352754 3.9e-12 13_[+1]_58 chrIII:123370-123833 3.9e-12 34_[+1]_37 chrXVI:209969-210531 4.5e-12 [+1]_71 chrXIII:290532-291164 4.5e-12 36_[-1]_35 chrX:115639-116245 4.5e-12 55_[+1]_16 chrVII:541614-542175 4.5e-12 39_[-1]_32 chrV:487015-487677 4.5e-12 43_[+1]_28 chrV:176872-177419 4.5e-12 37_[-1]_34 chrIV:1016972-1017518 4.5e-12 20_[+1]_51 chrIII:82256-82767 4.5e-12 9_[+1]_62 chrII:644948-645413 4.5e-12 70_[-1]_1 chrXIII:131590-132118 9.3e-12 29_[+1]_42 chrXI:162262-162760 9.3e-12 34_[+1]_37 chrX:374172-374846 9.3e-12 55_[+1]_16 chrX:355133-355743 9.3e-12 19_[-1]_52 chrVII:828455-829008 9.3e-12 50_[+1]_21 chrVII:736140-736645 9.3e-12 31_[-1]_40 chrVII:405258-405811 9.3e-12 19_[-1]_52 chrII:405579-406225 9.3e-12 59_[-1]_12 chrXVI:856704-857129 1.4e-11 70_[-1]_1 chrXIII:768137-768660 1.4e-11 29_[+1]_42 chrXIII:320975-321381 1.4e-11 27_[+1]_44 chrXII:656681-657215 1.4e-11 44_[+1]_27 chrVIII:145981-146478 1.4e-11 71_[+1] chrVII:774107-774675 1.4e-11 42_[-1]_29 chrIV:410138-410714 1.4e-11 37_[-1]_34 chrXV:980458-981071 2.4e-11 35_[-1]_36 chrXV:300860-301440 2.4e-11 60_[-1]_11 chrXIV:546922-547428 2.4e-11 33_[-1]_38 chrXII:92299-92915 2.4e-11 55_[-1]_16 chrVIII:388677-389215 2.4e-11 5_[+1]_66 chrXI:46424-47040 3.5e-11 61_[+1]_10 chrVIII:475500-475917 4.5e-11 56_[+1]_15 chrIV:1075294-1075762 4.5e-11 2_[+1]_69 chrXV:663504-664113 5.1e-11 62_[+1]_9 chrXIII:586399-586919 5.1e-11 35_[+1]_36 chrXIII:420313-420890 5.1e-11 45_[+1]_26 chrXIII:372174-372755 5.1e-11 39_[+1]_32 chrXII:687644-688177 5.1e-11 7_[+1]_64 chrXI:379457-379977 5.1e-11 48_[-1]_23 chrXI:307908-308436 5.1e-11 30_[+1]_41 chrVIII:134062-134672 5.1e-11 37_[-1]_34 chrVIII:85040-85602 5.1e-11 35_[+1]_36 chrVII:823265-823727 5.1e-11 71_[-1] chrV:469232-469759 5.1e-11 47_[-1]_24 chrV:250092-250552 5.1e-11 47_[-1]_24 chrII:350597-351088 5.1e-11 68_[-1]_3 chrX:538344-538828 5.8e-11 52_[-1]_19 chrV:130857-131384 9.3e-11 20_[+1]_51 chrXV:353809-354331 1.2e-10 29_[+1]_42 chrXIV:104602-105148 1.2e-10 14_[-1]_57 chrVIII:115888-116417 1.2e-10 13_[+1]_58 chrIX:325532-326073 1.2e-10 30_[-1]_41 chrIX:174794-175318 1.2e-10 59_[-1]_12 chrIV:433989-434575 1.2e-10 40_[+1]_31 chrII:266160-266692 1.2e-10 36_[-1]_35 chrIV:488496-489127 1.3e-10 44_[+1]_27 chrII:326553-327115 1.3e-10 16_[+1]_55 chrXIV:96030-96544 3.1e-10 12_[+1]_59 chrVII:779390-779902 3.1e-10 53_[-1]_18 chrXVI:768977-769510 9.5e-10 22_[+1]_49 chrXV:438431-438972 9.5e-10 49_[-1]_22 chrXII:875170-875669 9.5e-10 64_[-1]_7 chrXI:578735-579292 9.5e-10 59_[-1]_12 chrX:233664-234278 1.3e-09 52_[-1]_19 chrXV:976187-976702 1.4e-09 61_[-1]_10 chrX:422665-423255 1.4e-09 61_[-1]_10 chrXV:487221-487748 1.8e-09 40_[-1]_31 chrXIV:632417-632893 1.8e-09 29_[-1]_42 chrXIV:102485-103083 1.8e-09 17_[-1]_54 chrXII:975787-976287 1.8e-09 4_[+1]_67 chrXI:74366-74942 1.8e-09 55_[-1]_16 chrVII:730923-731420 1.8e-09 51_[-1]_20 chrXVI:55834-56502 2.6e-09 59_[+1]_12 chrXIII:378951-379638 2.6e-09 67_[+1]_4 chrXVI:622293-622854 4e-09 25_[+1]_46 chrVIII:237667-238141 4e-09 2_[+1]_69 chrXII:374156-374710 7e-09 6_[-1]_65 chrXI:490727-491280 7e-09 49_[-1]_22 chrV:492186-492626 7e-09 4_[+1]_67 chrIV:619722-620283 7e-09 25_[+1]_46 chrXVI:744053-744584 1.2e-08 49_[-1]_22 chrXIII:837683-838241 1.2e-08 66_[-1]_5 chrXIII:168576-169082 1.2e-08 66_[-1]_5 chrIV:946108-946627 1.2e-08 45_[-1]_26 chrXVI:338660-339141 1.5e-08 6_[+1]_65 chrXV:710007-710508 1.5e-08 27_[-1]_44 chrX:517612-518102 1.5e-08 14_[+1]_57 chrIV:1095111-1095716 1.6e-08 15_[+1]_56 chrXVI:435606-436209 3.7e-08 44_[+1]_27 chrVII:706924-707356 3.7e-08 26_[+1]_45 chrXIII:463302-463919 3.9e-08 27_[-1]_44 chrXII:426900-427463 3.9e-08 34_[-1]_37 chrX:541297-541801 3.9e-08 42_[-1]_29 chrVII:544331-544889 3.9e-08 25_[+1]_46 chrIX:336125-336644 3.9e-08 23_[+1]_48 chrXIII:362853-363344 9.1e-08 49_[-1]_22 chrXI:313167-313678 9.1e-08 37_[+1]_34 chrVII:319571-320136 9.1e-08 11_[-1]_60 chrVII:110396-110925 9.1e-08 23_[+1]_48 chrV:434359-434804 9.1e-08 18_[+1]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATCGAACCSVKGAYCTYHYGVTTR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BSGGRATCGAACCSVKGAYCTYHYGVTTR width=29 seqs=128 chrXIV:569675-570147 ( 15) GCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrXII:1051856-1052383 ( 11) GCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrVII:738866-739531 ( 10) GCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrV:551024-551588 ( 38) GCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrIX:210478-210952 ( 36) GCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrIV:667772-668261 ( 50) GCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrII:197246-197891 ( 12) GCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrXII:214654-215186 ( 22) CCGGAATCGAACCGATGACCTCTTCCTTG 1 chrV:311734-312326 ( 52) CCGGAATCGAACCGATGACCTCTTCCTTG 1 chrI:166031-166632 ( 21) CCGGAATCGAACCGATGACCTCTTCCTTG 1 chrXVI:860136-860690 ( 49) CCGGAATCGAACCGGGGGCCCAACGATGG 1 chrXVI:572003-572629 ( 36) CCGGAATCGAACCGGGGGCCCAACGATGG 1 chrXV:281947-282449 ( 49) CCGGAATCGAACCGGGGGCCCAACGATGG 1 chrX:531563-532205 ( 27) CCGGAATCGAACCGGGGGCCCAACGATGG 1 chrVII:930717-931239 ( 34) CCGGAATCGAACCGGGGGCCCAACGATGG 1 chrVI:180662-181274 ( 65) CCGGAATCGAACCGGGGGCCCAACGATGG 1 chrIV:992595-993091 ( 72) CCGGAATCGAACCGGGGGCCCAACGATGG 1 chrIV:83316-83816 ( 65) CCGGAATCGAACCGGGGGCCCAACGATGG 1 chrIII:142400-143008 ( 56) CCGGAATCGAACCGGGGGCCCAACGATGG 1 chrXVI:581823-582393 ( 39) GGGGGCTCGAACCCCTAACCTTATGATTA 1 chrXIII:480407-480925 ( 14) GGGGGCTCGAACCCCTAACCTTATGATTA 1 chrXI:202808-203293 ( 34) GGGGGCTCGAACCCCTAACCTTATGATTA 1 chrX:414759-415259 ( 42) GGGGGCTCGAACCCCTAACCTTATGATTA 1 chrVII:876114-876701 ( 72) GGGGGCTCGAACCCCTAACCTTATGATTA 1 chrVII:122045-122654 ( 5) GGGGGCTCGAACCCCTAACCTTATGATTA 1 chrV:135167-135724 ( 39) GGGGGCTCGAACCCCTAACCTTATGATTA 1 chrIX:299973-300536 ( 33) GGGGGCTCGAACCCCTAACCTTATGATTA 1 chrIV:1352269-1352754 ( 14) GGGGGCTCGAACCCCTAACCTTATGATTA 1 chrIII:123370-123833 ( 35) CGGGACTCGAACCCGGGACCTCCCGCACC 1 chrXVI:209969-210531 ( 1) GGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrXIII:290532-291164 ( 37) GGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrX:115639-116245 ( 56) GGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrVII:541614-542175 ( 40) GGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrV:487015-487677 ( 44) GGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrV:176872-177419 ( 38) GGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrIV:1016972-1017518 ( 21) GGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrIII:82256-82767 ( 10) GGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrII:644948-645413 ( 71) GGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrXIII:131590-132118 ( 30) TGGGGGTCGAACCCATAATCTTCTGATTA 1 chrXI:162262-162760 ( 35) TGGGGGTCGAACCCATAATCTTCTGATTA 1 chrX:374172-374846 ( 56) TGGGGGTCGAACCCATAATCTTCTGATTA 1 chrX:355133-355743 ( 20) TGGGGGTCGAACCCATAATCTTCTGATTA 1 chrVII:828455-829008 ( 51) TGGGGGTCGAACCCATAATCTTCTGATTA 1 chrVII:736140-736645 ( 32) TGGGGGTCGAACCCATAATCTTCTGATTA 1 chrVII:405258-405811 ( 20) TGGGGGTCGAACCCATAATCTTCTGATTA 1 chrII:405579-406225 ( 60) TGGGGGTCGAACCCATAATCTTCTGATTA 1 chrXVI:856704-857129 ( 71) CCGGAATCGAACCGGAGACCTCTCCCATG 1 chrXIII:768137-768660 ( 30) CCGGAATCGAACCGGAGACCTCTCCCATG 1 chrXIII:320975-321381 ( 28) CCGGAATCGAACCGGAGACCTCTCCCATG 1 chrXII:656681-657215 ( 45) CCGGAATCGAACCGGAGACCTCTCCCATG 1 chrVIII:145981-146478 ( 72) CCGGAATCGAACCGGAGACCTCTCCCATG 1 chrVII:774107-774675 ( 43) CCGGAATCGAACCGGAGACCTCTCCCATG 1 chrIV:410138-410714 ( 38) CCGGAATCGAACCGGAGACCTCTCCCATG 1 chrXV:980458-981071 ( 36) TGGGAATTGAACCCAGGGCCTCTCGCATG 1 chrXV:300860-301440 ( 61) TGGGAATTGAACCCAGGGCCTCTCGCATG 1 chrXIV:546922-547428 ( 34) TGGGAATTGAACCCAGGGCCTCTCGCATG 1 chrXII:92299-92915 ( 56) TGGGAATTGAACCCAGGGCCTCTCGCATG 1 chrVIII:388677-389215 ( 6) TGGGAATTGAACCCAGGGCCTCTCGCATG 1 chrXI:46424-47040 ( 62) TGGGAATTGAACCCACGATCCCCGCATTA 1 chrVIII:475500-475917 ( 57) CGAGGATCGAACTCGGGACCTTTGCCGTG 1 chrIV:1075294-1075762 ( 3) CGAGGATCGAACTCGGGACCTTTGCCGTG 1 chrXV:663504-664113 ( 63) CCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXIII:586399-586919 ( 36) CCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXIII:420313-420890 ( 46) CCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXIII:372174-372755 ( 40) CCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXII:687644-688177 ( 8) CCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXI:379457-379977 ( 49) CCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXI:307908-308436 ( 31) CCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrVIII:134062-134672 ( 38) CCGGATTCGAACCGGGGTTGTCCGGATCA 1 chrVIII:85040-85602 ( 36) CCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrVII:823265-823727 ( 72) CCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrV:469232-469759 ( 48) CCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrV:250092-250552 ( 48) CCGGATTCGAACCGGGGTTGTCCGGATCA 1 chrII:350597-351088 ( 69) CCGGATTCGAACCGGGGTTGTCCGGATCA 1 chrX:538344-538828 ( 53) CGGGACTCGAACCCGCAGTCTTCTCCTTA 1 chrV:130857-131384 ( 21) CCGGATTCGAACCGGGGTTGTTCGGATCA 1 chrXV:353809-354331 ( 30) TCGGATTTGAACCGATGATCTCCACATTA 1 chrXIV:104602-105148 ( 15) TCGGATTTGAACCGATGATCTCCACATTA 1 chrVIII:115888-116417 ( 14) TCGGATTTGAACCGATGATCTCCACATTA 1 chrIX:325532-326073 ( 31) TCGGATTTGAACCGATGATCTCCACATTA 1 chrIX:174794-175318 ( 60) TCGGATTTGAACCGATGATCTCCACATTA 1 chrIV:433989-434575 ( 41) TCGGATTTGAACCGATGATCTCCACATTA 1 chrII:266160-266692 ( 37) TCGGATTTGAACCGATGATCTCCACATTA 1 chrIV:488496-489127 ( 45) CGAGGTTCGAACTCGGGATCTTCGCCGTG 1 chrII:326553-327115 ( 17) CGAGGTTCGAACTCGGGATCTTCGCCGTG 1 chrXIV:96030-96544 ( 13) CGAGAATCGAACCCGTGTCCCCACCTTGG 1 chrVII:779390-779902 ( 54) CGAGAATCGAACCCGTGTCCCCACCTTGG 1 chrXVI:768977-769510 ( 23) GGGGGCTCGAACCCCTGACATTTCGGTAT 1 chrXV:438431-438972 ( 50) GGGGGCTCGAACCCCTGACATTTCGGTAT 1 chrXII:875170-875669 ( 65) GGGGGCTCGAACCCCTGACATTTCGGTAT 1 chrXI:578735-579292 ( 60) GGGGGCTCGAACCCCTGACATTTCGGTAT 1 chrX:233664-234278 ( 53) CAGGACTCGAACCTGGAATCTCCTGGTTC 1 chrXV:976187-976702 ( 62) GGAGGTTCGAACTCTCGACCTTCAGATTA 1 chrX:422665-423255 ( 62) GGAGGTTCGAACTCTCGACCTTCAGATTA 1 chrXV:487221-487748 ( 41) TGAGGGTTGAACTCACGATCTTGCGATTA 1 chrXIV:632417-632893 ( 30) TGAGGGTTGAACTCACGATCTTGCGATTA 1 chrXIV:102485-103083 ( 18) TGAGGGTTGAACTCACGATCTTGCGATTA 1 chrXII:975787-976287 ( 5) TGAGGGTTGAACTCACGATCTTGCGATTA 1 chrXI:74366-74942 ( 56) TGAGGGTTGAACTCACGATCTTGCGATTA 1 chrVII:730923-731420 ( 52) TGAGGGTTGAACTCACGATCTTGCGATTA 1 chrXVI:55834-56502 ( 60) CAGGAATTGAACCTGCAACCCTTCGATTG 1 chrXIII:378951-379638 ( 68) CAGGAATTGAACCTGCAACCCTTCGATTG 1 chrXVI:622293-622854 ( 26) TGTGGATCGAACACAGGACCTCCAGATAA 1 chrVIII:237667-238141 ( 3) TGTGGATCGAACACAGGACCTCCAGATAA 1 chrXII:374156-374710 ( 7) CAGGACTTGAACCTGGAATCTTCTGGTTC 1 chrXI:490727-491280 ( 50) CAGGACTTGAACCTGGAATCTTCTGGTTC 1 chrV:492186-492626 ( 5) CAGGACTTGAACCTGGAATCTTCTGGTTC 1 chrIV:619722-620283 ( 26) CAGGACTTGAACCTGGAATCTTCTGGTTC 1 chrXVI:744053-744584 ( 50) TCAGAATTGAACTAACGACCTTTGCATTA 1 chrXIII:837683-838241 ( 67) GGCGAGTCGAACGCCCGATCTCAAGATTT 1 chrXIII:168576-169082 ( 67) GGCGAGTCGAACGCCCGATCTCAAGATTT 1 chrIV:946108-946627 ( 46) GGCGAGTCGAACGCCCGATCTCAAGATTT 1 chrXVI:338660-339141 ( 7) TCGGTTTCGATCCGAGGACATCAGGGTTA 1 chrXV:710007-710508 ( 28) TCGGTTTCGATCCGAGGACATCAGGGTTA 1 chrX:517612-518102 ( 15) TCGGTTTCGATCCGAGGACATCAGGGTTA 1 chrIV:1095111-1095716 ( 16) TGTGGATCGAACACAGGACCTCCAGATAT 1 chrXVI:435606-436209 ( 45) TCAGGATCGAACTAAGGACCAACAGATTT 1 chrVII:706924-707356 ( 27) TCAGGATCGAACTAAGGACCAACAGATTT 1 chrXIII:463302-463919 ( 28) GGGGAATTGAACCCCGATCTGGCACGCGA 1 chrXII:426900-427463 ( 35) GGGGAATTGAACCCCGATCTGGCACGCGA 1 chrX:541297-541801 ( 43) GGGGAATTGAACCCCGATCTGGCACGCGA 1 chrVII:544331-544889 ( 26) GGGGAATTGAACCCCGATCTGGCACGCGA 1 chrIX:336125-336644 ( 24) GGGGAATTGAACCCCGATCTGGCACGCGA 1 chrXIII:362853-363344 ( 50) CTAGAATCGAACCAGGGTTTCATCGGCCA 1 chrXI:313167-313678 ( 38) CTAGAATCGAACCAGGGTTTCATCGGCCA 1 chrVII:319571-320136 ( 12) CTAGAATCGAACCAGGGTTTCATCGGCCA 1 chrVII:110396-110925 ( 24) CTAGAATCGAACCAGGGTTTCATCGGCCA 1 chrV:434359-434804 ( 19) CTAGAATCGAACCAGGGTTTCATCGGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATCGAACCSVKGAYCTYHYGVTTR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 38664 bayes= 8.9728 E= 8.1e-642 -1364 115 70 -15 -252 115 139 -300 -32 -300 191 -374 -1364 -1364 242 -1364 81 -1364 120 -374 68 -26 12 -115 -1364 -1364 -1364 168 -1364 202 -1364 -37 -1364 -1364 242 -1364 168 -1364 -1364 -1364 164 -1364 -1364 -374 -1364 242 -1364 -1364 -374 202 -300 -68 -232 139 106 -252 -4 63 106 -432 -252 -58 144 0 -42 -1364 203 -1364 114 -1364 -68 -68 -1364 172 -1364 29 -252 188 -78 -108 -432 55 -226 110 -132 120 -226 38 -19 128 -200 -47 -86 106 -26 -15 -1364 67 191 -1364 51 37 67 -432 -162 -126 -78 118 -252 -126 6 110 81 -200 81 -200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATCGAACCSVKGAYCTYHYGVTTR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 128 E= 8.1e-642 0.000000 0.414062 0.304688 0.281250 0.054688 0.414062 0.492188 0.039062 0.250000 0.023438 0.703125 0.023438 0.000000 0.000000 1.000000 0.000000 0.546875 0.000000 0.429688 0.023438 0.500000 0.156250 0.203125 0.140625 0.000000 0.000000 0.000000 1.000000 0.000000 0.757812 0.000000 0.242188 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.976562 0.000000 0.000000 0.023438 0.000000 1.000000 0.000000 0.000000 0.023438 0.757812 0.023438 0.195312 0.062500 0.492188 0.390625 0.054688 0.304688 0.289062 0.390625 0.015625 0.054688 0.125000 0.507812 0.312500 0.234375 0.000000 0.765625 0.000000 0.687500 0.000000 0.117188 0.195312 0.000000 0.617188 0.000000 0.382812 0.054688 0.687500 0.109375 0.148438 0.015625 0.273438 0.039062 0.671875 0.125000 0.429688 0.039062 0.406250 0.273438 0.453125 0.046875 0.226562 0.171875 0.390625 0.156250 0.281250 0.000000 0.296875 0.703125 0.000000 0.445312 0.242188 0.296875 0.015625 0.101562 0.078125 0.109375 0.710938 0.054688 0.078125 0.195312 0.671875 0.546875 0.046875 0.328125 0.078125 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRATCGAACCSVKGAYCTYHYGVTTR MEME-1 regular expression -------------------------------------------------------------------------------- [CGT][GC][GA]G[AG][AG]T[CT]GAACC[CG][GAC][GT][GA]A[CT]C[TC][CT][CAT][CT][GC][AGC]TT[AG] -------------------------------------------------------------------------------- Time 279.79 secs. ******************************************************************************** ******************************************************************************** MOTIF BDTRGYCBARTKGKTARMGCGNYMSRYTY MEME-2 width = 29 sites = 165 llr = 2376 E-value = 3.3e-433 ******************************************************************************** -------------------------------------------------------------------------------- Motif BDTRGYCBARTKGKTARMGCGNYMSRYTY MEME-2 Description -------------------------------------------------------------------------------- Simplified A 13:4:::1931::::7443:1223141:2 pos.-specific C 41:::6531:12:12::3:6224432512 probability G 3315a132:714a61:42736211541:2 matrix T 3491:3241:84:47321:1143211384 bits 2.4 * 2.2 * * 1.9 * * 1.7 * * Relative 1.5 * * Entropy 1.2 * * * * * (20.8 bits) 1.0 * * ** ** ** * 0.7 ***** *** **** *** * 0.5 ***** ******** *** * ** 0.2 ********************* ****** 0.0 ----------------------------- Multilevel CTTGGCCTAGTGGGTAGAGCGTCCGGCTT consensus TG A TGC A T T TACAGCCTACAT C sequence GA G A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTRGYCBARTKGKTARMGCGNYMSRYTY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXII:875170-875669 + 12 1.53e-12 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCGTTCGGCTT TTAAGCGCAT chrXI:578735-579292 + 7 1.53e-12 ATCCTT GTTAGCTCAGTTGGTAGAGCGTTCGGCTT TTAAGCGCAT chrVII:115273-115772 + 21 1.53e-12 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCGTTCGGCTT TTAAGCGCAT chrXII:214654-215186 - 52 6.06e-12 TTTTAGGGCA CATGGCGCAGTTGGTAGCGCGCTTCCCTT GCAAGGAAGA chrXVI:689317-689849 + 37 1.43e-11 TTTTGGGCAC TATGGCCGAGTGGTTAAGGCGACAGACTT GAAATCTGTT chrV:288183-288762 - 69 1.43e-11 CAC TATGGCCGAGTGGTTAAGGCGACAGACTT GAAATCTGTT chrXVI:856704-857129 + 41 2.15e-11 GATTCGGGCG TGTGGCGTAGTCGGTAGCGCGCTCCCTTA GCATGGGAGA chrXIII:768137-768660 - 60 2.15e-11 GAAATGGGCG TGTGGCGTAGTCGGTAGCGCGCTCCCTTA GCATGGGAGA chrXIII:320975-321381 - 58 2.15e-11 AAATCGGGCG TGTGGCGTAGTCGGTAGCGCGCTCCCTTA GCATGGGAGA chrXI:517765-518189 + 66 2.15e-11 ACTATGGGCG TGTGGCGTAGTCGGTAGCGCGCTCCCTTA GCATGG chrXI:219668-220103 + 65 2.15e-11 AAATAGGGCG TGTGGCGTAGTCGGTAGCGCGCTCCCTTA GCATGGG chrX:197134-197622 - 24 2.15e-11 TATTAGGGCG TGTGGCGTAGTCGGTAGCGCGCTCCCTTA GCATGGGAGA chrVII:774107-774675 + 13 2.15e-11 TAATTGGGCG TGTGGCGTAGTCGGTAGCGCGCTCCCTTA GCATGGGAGA chrVI:204739-205241 - 23 2.15e-11 CGTTCGGGCG TGTGGCGTAGTCGGTAGCGCGCTCCCTTA GCATGGGAGA chrIV:410138-410714 + 8 2.15e-11 TTGGGCG TGTGGCGTAGTCGGTAGCGCGCTCCCTTA GCATGGGAGA chrXVI:581823-582393 + 9 1.01e-10 AGAGCCTT GTTGGCGCAATCGGTAGCGCGTATGACTC TTAATCATAA chrXIII:480407-480925 - 44 1.01e-10 AAGTAGCCTT GTTGGCGCAATCGGTAGCGCGTATGACTC TTAATCATAA chrXI:202808-203293 + 4 1.01e-10 CTT GTTGGCGCAATCGGTAGCGCGTATGACTC TTAATCATAA chrX:414759-415259 + 12 1.01e-10 AATTAGCCTT GTTGGCGCAATCGGTAGCGCGTATGACTC TTAATCATAA chrVII:876114-876701 + 42 1.01e-10 GAATAGCCTT GTTGGCGCAATCGGTAGCGCGTATGACTC TTAATCATAA chrVI:226522-226983 - 25 1.01e-10 AAAATGCCTT GTTGGCGCAATCGGTAGCGCGTATGACTC TTAATCATAA chrV:435594-436040 - 24 1.01e-10 TAAGAGCCTT GTTGGCGCAATCGGTAGCGCGTATGACTC TTAATCATAA chrV:135167-135724 - 69 1.01e-10 CTT GTTGGCGCAATCGGTAGCGCGTATGACTC TTAATCATAA chrIX:299973-300536 - 63 1.01e-10 AATAGCCTT GTTGGCGCAATCGGTAGCGCGTATGACTC TTAATCATAA chrIV:1352269-1352754 - 44 1.01e-10 AAATAGCCTT GTTGGCGCAATCGGTAGCGCGTATGACTC TTAATCATAA chrIV:1201462-1202057 + 46 1.01e-10 AAATAGCCTT GTTGGCGCAATCGGTAGCGCGTATGACTC TTAATCATAA chrIII:227750-228216 + 14 1.01e-10 GAAATGGCAC TATGGCCGAGTGGTTAAGGCGAGAGACTC GAATGGAATA chrXV:353809-354331 - 60 1.45e-10 TTACTGCTTC TATGGCCAAGTTGGTAAGGCGCCACACTA GTAATGTGGA chrVIII:115888-116417 - 44 1.45e-10 TTAGAGCTTC TATGGCCAAGTTGGTAAGGCGCCACACTA GTAATGTGGA chrIX:325532-326073 + 1 1.45e-10 . TATGGCCAAGTTGGTAAGGCGCCACACTA GTAATGTGGA chrIX:174794-175318 + 30 1.45e-10 TACGAGCTTC TATGGCCAAGTTGGTAAGGCGCCACACTA GTAATGTGGA chrIV:433989-434575 - 71 1.45e-10 C TATGGCCAAGTTGGTAAGGCGCCACACTA GTAATGTGGA chrII:266160-266692 + 7 1.45e-10 TGCTTC TATGGCCAAGTTGGTAAGGCGCCACACTA GTAATGTGGA chrXIV:374664-375115 + 35 2.92e-10 AATAAGCGGA CTTAGCTCAGTTGGGAGAGCGCCAGACTG AAGAAAAACT chrIV:1095111-1095716 - 65 2.92e-10 TAGCGGA CTTAGCTCAGTTGGGAGAGCGCCAGACTG AAGAAAAAAC chrXIII:258977-259488 - 24 4.10e-10 AGTATGGCAA CTTGGCCGAGTGGTTAAGGCGAAAGATTA GAAATCTTTT chrXII:167764-168280 - 20 4.10e-10 CATATGGCAA CTTGGCCGAGTGGTTAAGGCGAAAGATTA GAAATCTTTT chrX:523871-524333 - 8 4.10e-10 TTAAAGGCAA CTTGGCCGAGTGGTTAAGGCGAAAGATTA GAAATCT chrVIII:132793-133382 - 37 4.10e-10 TAAGTGGCAA CTTGGCCGAGTGGTTAAGGCGAAAGATTA GAAATCTTTT chrIV:1305355-1305932 + 42 4.10e-10 ATTAAGGCAA CTTGGCCGAGTGGTTAAGGCGAAAGATTA GAAATCTTTT chrIV:980767-981279 - 49 4.10e-10 ATTGAGGCAA CTTGGCCGAGTGGTTAAGGCGAAAGATTA GAAATCTTTT chrIV:437517-438077 + 30 4.10e-10 AGTAAGGCAA CTTGGCCGAGTGGTTAAGGCGAAAGATTA GAAATCTTTT chrII:226838-227391 + 16 4.10e-10 AACGAGGCAA CTTGGCCGAGTGGTTAAGGCGAAAGATTA GAAATCTTTT chrI:182332-182804 - 52 4.10e-10 ATTTTGGCAA CTTGGCCGAGTGGTTAAGGCGAAAGATTA GAAATCTTTT chrXIII:352044-352529 + 49 7.91e-10 TATAAGCGGA TTTAGCTCAGTTGGGAGAGCGCCAGACTG AAGAAATACT chrVIII:358287-358801 - 42 7.91e-10 AGTAAGCGGA TTTAGCTCAGTTGGGAGAGCGCCAGACTG AAGAAAAAAC chrVIII:237667-238141 - 52 7.91e-10 AGTAAGCGGA TTTAGCTCAGTTGGGAGAGCGCCAGACTG AAGAAAAAAC chrVI:157766-158243 - 20 7.91e-10 TAGAAGCGGA TTTAGCTCAGTTGGGAGAGCGCCAGACTG AAGAAAAAAC chrII:36149-36633 + 62 7.91e-10 TGTAAGCGGA TTTAGCTCAGTTGGGAGAGCGCCAGACTG AAGAAAAACT chrXV:340107-340622 - 24 1.48e-09 ATCTGTTCCT CGTGGCCCAATGGTCACGGCGTCTGGCTA CGAACCAGAA chrXI:490727-491280 + 20 1.48e-09 TCTTGTTCCT CGTGGCCCAATGGTCACGGCGTCTGGCTA CGAACCAGAA chrX:233664-234278 + 23 1.48e-09 TCTTGTTCCT CGTGGCCCAATGGTCACGGCGTCTGGCTA CGAACCAGGA chrV:492186-492626 - 35 1.48e-09 TCCTATTCCT CGTGGCCCAATGGTCACGGCGTCTGGCTA CGAACCAGAA chrIV:619722-620283 - 56 1.48e-09 TCTTGTTCCT CGTGGCCCAATGGTCACGGCGTCTGGCTA CGAACCAGAA chrXV:274462-274979 + 8 2.01e-09 GTGTCCC AGTGGCCGAGTGGTTAAGGCGATGCCCTG CTATTTCCTC chrXII:605136-605623 - 70 8.39e-09 CG TGTAGCTCAGTGGTTAGAGCTTCGTGCTT ATAGCAACAT chrIV:884153-884656 + 12 8.39e-09 AAAATGCTCG TGTAGCTCAGTGGTTAGAGCTTCGTGCTT ATAGCAACAT chrXIII:586399-586919 - 67 9.61e-09 GGTTT CGTGGTCTAGTCGGTTATGGCATCTGCTT AACACGCAGA chrXIII:372174-372755 - 71 9.61e-09 T CGTGGTCTAGTCGGTTATGGCATCTGCTT AACACGCAGA chrXII:687644-688177 - 39 9.61e-09 TAATAGGTTT CGTGGTCTAGTCGGTTATGGCATCTGCTT AACACGCAGA chrXI:379457-379977 + 18 9.61e-09 TAATAGGTTT CGTGGTCTAGTCGGTTATGGCATCTGCTT AACACGCAGA chrXI:307908-308436 - 62 9.61e-09 TAAGTGGTTT CGTGGTCTAGTCGGTTATGGCATCTGCTT AACACGCAGA chrX:378131-378566 + 67 9.61e-09 TAATAGGTTT CGTGGTCTAGTCGGTTATGGCATCTGCTT AACAC chrVIII:85040-85602 - 67 9.61e-09 GGTTT CGTGGTCTAGTCGGTTATGGCATCTGCTT AACACGCAGA chrVII:823265-823727 + 41 9.61e-09 AGAGTGGTTT CGTGGTCTAGTCGGTTATGGCATCTGCTT AACACGCAGA chrVII:412115-412599 - 27 9.61e-09 AAACTGGTTT CGTGGTCTAGTCGGTTATGGCATCTGCTT AACACGCAGA chrVII:73663-74150 - 13 9.61e-09 TAAGTGGTTT CGTGGTCTAGTCGGTTATGGCATCTGCTT AACACGCAGA chrV:469232-469759 + 17 9.61e-09 TAATTGGTTT CGTGGTCTAGTCGGTTATGGCATCTGCTT AACACGCAGA chrXIV:602092-602558 + 42 1.25e-08 ACAATGGTCT CTTGGCCCAGTTGGTTAAGGCACCGTGCT AATAACGCGG chrXIV:569675-570147 - 46 1.25e-08 ACAGTGGTCT CTTGGCCCAGTTGGTTAAGGCACCGTGCT AATAACGCGG chrXII:1051856-1052383 - 42 1.25e-08 TTCATGGTCT CTTGGCCCAGTTGGTTAAGGCACCGTGCT AATAACGCGG chrXII:731895-732336 + 30 1.25e-08 ACAATGGGAG TTTGGCCGAGTGGTTTAAGGCGTCAGATT TAGGTGGATT chrX:617693-618164 + 46 1.25e-08 ACAATGGGAG TTTGGCCGAGTGGTTTAAGGCGTCAGATT TAGGTGGATT chrV:551024-551588 - 69 1.25e-08 TCT CTTGGCCCAGTTGGTTAAGGCACCGTGCT AATAACGCGG chrV:443058-443518 - 4 1.25e-08 AATTTGGTCT CTTGGCCCAGTTGGTTAAGGCACCGTGCT AAT chrIX:210478-210952 + 5 1.25e-08 GTCT CTTGGCCCAGTTGGTTAAGGCACCGTGCT AATAACGCGG chrIX:183272-183737 - 26 1.25e-08 TTCCTGGTCT CTTGGCCCAGTTGGTTAAGGCACCGTGCT AATAACGCGG chrXVI:810452-810876 + 67 4.98e-08 TTTGCGACTC CATGGCCAAGTTGGTTAAGGCGTGCGACT GTTAA chrXV:487221-487748 + 10 4.98e-08 GTTAGACTC CATGGCCAAGTTGGTTAAGGCGTGCGACT GTTAATCGCA chrXV:228038-228631 + 52 4.98e-08 TATTAGACTC CATGGCCAAGTTGGTTAAGGCGTGCGACT GTTAATCGCA chrXII:975787-976287 - 36 4.98e-08 TAAAAGACTC CATGGCCAAGTTGGTTAAGGCGTGCGACT GTTAATCGCA chrXI:74366-74942 + 25 4.98e-08 AATTAGACTC CATGGCCAAGTTGGTTAAGGCGTGCGACT GTTAATCGCA chrVII:730923-731420 + 21 4.98e-08 AAAAAGACTC CATGGCCAAGTTGGTTAAGGCGTGCGACT GTTAATCGCA chrVI:137238-137909 - 3 4.98e-08 TGACTGACTC CATGGCCAAGTTGGTTAAGGCGTGCGACT GT chrIII:127515-127916 + 56 4.98e-08 AAAATGACTC CATGGCCAAGTTGGTTAAGGCGTGCGACT GTTAATCGCA chrVIII:134062-134672 + 9 5.60e-08 TCCGGTCC TATAGTGTAGTGGTTATCACTTTCGGTTT TGATCCGGAC chrV:250092-250552 + 19 5.60e-08 GTACTGGTCC TATAGTGTAGTGGTTATCACTTTCGGTTT TGATCCGGAC chrV:130857-131384 - 50 5.60e-08 TAAGAGGTTT TATAGTGTAGTGGTTATCACTTTCGGTTT TGATCCGAAC chrIV:802558-803023 - 29 5.60e-08 TTGTCGGTCC TATAGTGTAGTGGTTATCACTTTCGGTTT TGATCCGGAC chrIV:644929-645500 - 27 5.60e-08 GTTACGGTCC TATAGTGTAGTGGTTATCACTTTCGGTTT TGATCCGGAC chrIII:168103-168617 - 29 5.60e-08 GTCCTGGTCC TATAGTGTAGTGGTTATCACTTTCGGTTT TGATCCGGAC chrII:350597-351088 + 40 5.60e-08 AAAAGGGTTT TATAGTGTAGTGGTTATCACTTTCGGTTT TGATCCGGAC chrXII:628160-628672 + 22 8.90e-08 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGCGCCTGATT CAAGAAAATA chrVII:857218-857718 - 40 8.90e-08 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGCGCCTGATT CAAGAAATAT chrVII:205253-205763 + 68 8.90e-08 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGCGCCTGATT CAAG chrIV:1461481-1462095 - 58 8.90e-08 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGCGCCTGATT CAAGAAAAAA chrXIV:96030-96544 - 42 1.25e-07 CACATGGGCG GTTAGTGTAGTGGTTATCATCCCACCCTT CCAAGGTGGG chrVII:779390-779902 + 25 1.25e-07 ACCCCGGGCG GTTAGTGTAGTGGTTATCATCCCACCCTT CCAAGGTGGG chrXII:962805-963316 - 12 1.55e-07 TCGACGGAGG GTTGGCCGAGTGGTCTAAGGCGGCAGACT TAAGATCTGT chrX:424271-424754 - 20 1.55e-07 AAGATGGAGG GTTGGCCGAGTGGTCTAAGGCGGCAGACT TAAGATCTGT chrIV:519521-519961 + 57 1.55e-07 TTTACGGAGG GTTGGCCGAGTGGTCTAAGGCGGCAGACT TAAGATCTGT chrX:538344-538828 + 23 4.39e-07 AAGTTGGTTC CGTTGGCGTAATGGTAACGCGTCTCCCTC CTAAGGAGAA chrIV:1150658-1151182 - 38 4.84e-07 TTTCAGTCCC AGTGGCCGAGTGGTTAAGGCGATGCCTGC TATTTCCTCA chrXV:571717-572170 + 70 8.62e-07 TAAAATCCGT GATAGTTTAATGGTCAGAATGGGCGCTTG TC chrXII:426900-427463 + 6 8.62e-07 TCCGT GATAGTTTAATGGTCAGAATGGGCGCTTG TCGCGTGCCA chrXI:513204-513635 - 1 8.62e-07 AACGTTCCGT GATAGTTTAATGGTCAGAATGGGCGCTTG chrX:541297-541801 + 14 8.62e-07 GAAAATCCGT GATAGTTTAATGGTCAGAATGGGCGCTTG TCGCGTGCCA chrX:374172-374846 - 3 8.62e-07 TTTCTTCCGT GATAGTTTAATGGTCAGAATGGGCGCTTG TC chrVII:544331-544889 - 55 8.62e-07 TTTCTTCCGT GATAGTTTAATGGTCAGAATGGGCGCTTG TCGCGTGCCA chrVII:531395-531805 + 65 8.62e-07 TTACTTCCGT GATAGTTTAATGGTCAGAATGGGCGCTTG TCGCGTG chrIX:336125-336644 - 53 8.62e-07 ACAAATCCGT GATAGTTTAATGGTCAGAATGGGCGCTTG TCGCGTGCCA chrIX:324116-324623 - 22 8.62e-07 AATATTCCGT GATAGTTTAATGGTCAGAATGGGCGCTTG TCGCGTGCCA chrIV:568654-569283 + 51 8.62e-07 TTTCTTCCGT GATAGTTTAATGGTCAGAATGGGCGCTTG TCGCGTGCCA chrXV:976187-976702 + 32 1.04e-06 TGTGCGCTTC AGTAGCTCAGTAGGAAGAGCGTCAGTCTC ATAATCTGAA chrX:422665-423255 + 32 1.04e-06 TGTATGCTTC AGTAGCTCAGTAGGAAGAGCGTCAGTCTC ATAATCTGAA chrIV:1175583-1176078 + 54 1.04e-06 ACAAAGCTTC AGTAGCTCAGTAGGAAGAGCGTCAGTCTC ATAATCTGAA chrXVI:209969-210531 - 30 1.63e-06 TATTGTCCGA TATAGTGTAACGGCTATCACATCACGCTT TCACCGTGGA chrXIII:290532-291164 + 8 1.63e-06 AATCCGA TATAGTGTAACGGCTATCACATCACGCTT TCACCGTGGA chrVII:541614-542175 + 11 1.63e-06 TACCATCCGA TATAGTGTAACGGCTATCACATCACGCTT TCACCGTGGA chrVII:401369-401805 - 28 1.63e-06 TTGTTTCCGA TATAGTGTAACGGCTATCACATCACGCTT TCACCGTGGA chrV:176872-177419 + 9 1.63e-06 TGATCCGA TATAGTGTAACGGCTATCACATCACGCTT TCACCGTGGA chrIX:370203-370644 + 49 1.63e-06 TATAATCCGA TATAGTGTAACGGCTATCACATCACGCTT TCACCGTGGA chrIII:82256-82767 - 39 1.63e-06 TGTTATCCGA TATAGTGTAACGGCTATCACATCACGCTT TCACCGTGGA chrII:644948-645413 + 42 1.63e-06 TATTATCCGA TATAGTGTAACGGCTATCACATCACGCTT TCACCGTGGA chrIX:197354-197812 + 64 2.12e-06 TCAAATCCGA TGTAGTGTAACGGCTATCACATCACGTTC TCACCGTG chrIV:1016972-1017518 - 50 2.12e-06 TACAATCCGA TGTAGTGTAACGGCTATCACATCACGTTC TCACCGTGGA chrXV:287980-288433 + 41 2.31e-06 AGCTTCTCTC GGTAGCCAAGTTGGTTTAAGGCGCAAGAC TGTAATTTAT chrXIII:837683-838241 + 21 2.31e-06 ATTGACTCTC GGTAGCCAAGTTGGTTTAAGGCGCAAGAC TGTAATTTAC chrXIII:168576-169082 + 21 2.31e-06 AGTCACTCTC GGTAGCCAAGTTGGTTTAAGGCGCAAGAC TGTAATTTAC chrX:542758-543306 - 29 2.31e-06 AAATACTCTC GGTAGCCAAGTTGGTTTAAGGCGCAAGAC TGTAATTTAT chrX:353901-354558 + 70 2.31e-06 TATCACTCTC GGTAGCCAAGTTGGTTTAAGGCGCAAGAC TG chrVI:210454-210908 - 43 2.31e-06 AACGACTCTC GGTAGCCAAGTTGGTTTAAGGCGCAAGAC TGTAATTTAC chrVI:167226-167697 + 31 2.31e-06 AACGACTCTC GGTAGCCAAGTTGGTTTAAGGCGCAAGAC TGTAATTTAC chrXIII:362853-363344 + 21 2.73e-06 AGTTTGCCAT CTTAGTATAGTGGTTAGTACACATCGTTG TGGCCGATGA chrXI:313167-313678 - 67 2.73e-06 GCCAT CTTAGTATAGTGGTTAGTACACATCGTTG TGGCCGATGA chrXI:302667-303250 + 14 2.73e-06 CAAGATGAAG CGGTGGCTCAATGGTAGAGCTTTCGACTC CAATTAAATC chrX:415761-416319 - 14 2.73e-06 AAAGTTGAAG CGGTGGCTCAATGGTAGAGCTTTCGACTC CAATTAAATC chrVIII:62546-62976 + 49 2.73e-06 CATATGCCAT CTTAGTATAGTGGTTAGTACACATCGTTG TGGCCGATGA chrVII:878559-879053 - 27 2.73e-06 CAAGATGAAG CGGTGGCTCAATGGTAGAGCTTTCGACTC CAATTAAATC chrVII:287118-287743 - 43 2.73e-06 CAAGATGAAG CGGTGGCTCAATGGTAGAGCTTTCGACTC CAATTAAATC chrVII:110396-110925 - 53 2.73e-06 TACCTGCCAT CTTAGTATAGTGGTTAGTACACATCGTTG TGGCCGATGA chrV:434359-434804 - 48 2.73e-06 AAGTCGCCAT CTTAGTATAGTGGTTAGTACACATCGTTG TGGCCGATGA chrIV:1256861-1257316 - 8 4.47e-06 TCTTAGCGAA AGTGGTTCAGTGGTTAGAATTCATGCTTC CCAAGCA chrIV:1075294-1075762 - 33 4.47e-06 ATATTGTTCC AATAGTGTAGCGGCTATCACGTTGCCTTC ACACGGCAAA chrII:326553-327115 - 48 4.47e-06 TTCCGGGTCC AATGGTCCAGTGGTTCAAGACGTCGCCTT TACACGGCGA chrIV:83316-83816 + 28 5.67e-06 TTCAAGTTCA CTTAGCGCAAGTGGTTTAGTGGTAAAATC CAACGTTGCC chrXIII:747740-748182 - 20 8.96e-06 TGACTAGCTC GCGTGGCGTAATGGCAACGCGTCTGACTT CTAATCAGAA chrXIII:131590-132118 - 60 8.96e-06 AATTTAGCTC GCGTGGCGTAATGGCAACGCGTCTGACTT CTAATCAGAA chrXI:162262-162760 - 65 8.96e-06 TTAGCTC GCGTGGCGTAATGGCAACGCGTCTGACTT CTAATCAGAA chrVII:736140-736645 + 2 8.96e-06 C GCGTGGCGTAATGGCAACGCGTCTGACTT CTAATCAGAA chrII:405579-406225 + 30 8.96e-06 ATAGTAGCTC GCGTGGCGTAATGGCAACGCGTCTGACTT CTAATCAGAA chrIV:27-398 - 68 1.29e-05 AGTG GATGGTTGAGTGGGGCAGGGTAACGAGTG GGGAGGTAGG chrXVI:338660-339141 - 37 1.71e-05 TTTAGCAGCG CCGTGGCGCAGTGGAAGCGCGCAGGGCTC ATAACCCTGA chrX:517612-518102 - 45 1.71e-05 AAGTTAAGCG CCGTGGCGCAGTGGAAGCGCGCAGGGCTC ATAACCCTGA chrXVI:775630-776065 - 7 1.96e-05 TCAAAAGCTC GTATGGCGCAGTGGTAGCGCAGCAGATTG CAAATC chrVII:706924-707356 - 57 1.96e-05 AATCAAGCTC GTATGGCGCAGTGGTAGCGCAGCAGATTG CAAATCTGTT chrII:642852-643308 - 16 1.96e-05 TAGAAAGCTC GTATGGCGCAGTGGTAGCGCAGCAGATTG CAAATCTGTT chrIII:262678-262980 + 7 2.10e-05 TCCGTC GGTAGCGATAATGTAAGAGGGTTCTGTCT CTAAAAATGT chrXVI:744053-744584 + 20 2.40e-05 GTAAAAGCCT CCTTAGCTTAGTGGTAGAGCGTTGCACTT GTAATGCAAA chrVII:1004000-1004449 + 46 2.40e-05 GGGTTTGCCT CCTTAGCTTAGTGGTAGAGCGTTGCACTT GTAATGCAAA chrVII:661513-662002 + 46 2.40e-05 AAATTTGCCT CCTTAGCTTAGTGGTAGAGCGTTGCACTT GTAATGCAAA chrXV:300860-301440 + 2 2.57e-05 G TGTGGTCTAGTGGTATGATTCTCGCTTTG GGCGACTTCC chrVIII:388677-389215 - 66 2.57e-05 TGGGCG TGTGGTCTAGTGGTATGATTCTCGCTTTG GGCGACTTCC chrIV:1300563-1301381 - 1 2.74e-05 ATTGGGTAAG AGTATGCGAGTTGGGAGCATGCGAGGTTG chrXIV:546922-547428 - 5 3.37e-04 CTCTCGCATG CTTTGTCTTCCTGTTTAGGCAGGAAGTCG CCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTRGYCBARTKGKTARMGCGNYMSRYTY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:875170-875669 1.5e-12 11_[+2]_60 chrXI:578735-579292 1.5e-12 6_[+2]_65 chrVII:115273-115772 1.5e-12 20_[+2]_51 chrXII:214654-215186 6.1e-12 51_[-2]_20 chrXVI:689317-689849 1.4e-11 36_[+2]_35 chrV:288183-288762 1.4e-11 68_[-2]_3 chrXVI:856704-857129 2.2e-11 40_[+2]_31 chrXIII:768137-768660 2.2e-11 59_[-2]_12 chrXIII:320975-321381 2.2e-11 57_[-2]_14 chrXI:517765-518189 2.2e-11 65_[+2]_6 chrXI:219668-220103 2.2e-11 64_[+2]_7 chrX:197134-197622 2.2e-11 23_[-2]_48 chrVII:774107-774675 2.2e-11 12_[+2]_59 chrVI:204739-205241 2.2e-11 22_[-2]_49 chrIV:410138-410714 2.2e-11 7_[+2]_64 chrXVI:581823-582393 1e-10 8_[+2]_63 chrXIII:480407-480925 1e-10 43_[-2]_28 chrXI:202808-203293 1e-10 3_[+2]_68 chrX:414759-415259 1e-10 11_[+2]_60 chrVII:876114-876701 1e-10 41_[+2]_30 chrVI:226522-226983 1e-10 24_[-2]_47 chrV:435594-436040 1e-10 23_[-2]_48 chrV:135167-135724 1e-10 68_[-2]_3 chrIX:299973-300536 1e-10 62_[-2]_9 chrIV:1352269-1352754 1e-10 43_[-2]_28 chrIV:1201462-1202057 1e-10 45_[+2]_26 chrIII:227750-228216 1e-10 13_[+2]_58 chrXV:353809-354331 1.4e-10 59_[-2]_12 chrVIII:115888-116417 1.4e-10 43_[-2]_28 chrIX:325532-326073 1.4e-10 [+2]_71 chrIX:174794-175318 1.4e-10 29_[+2]_42 chrIV:433989-434575 1.4e-10 70_[-2]_1 chrII:266160-266692 1.4e-10 6_[+2]_65 chrXIV:374664-375115 2.9e-10 34_[+2]_37 chrIV:1095111-1095716 2.9e-10 64_[-2]_7 chrXIII:258977-259488 4.1e-10 23_[-2]_48 chrXII:167764-168280 4.1e-10 19_[-2]_52 chrX:523871-524333 4.1e-10 7_[-2]_64 chrVIII:132793-133382 4.1e-10 36_[-2]_35 chrIV:1305355-1305932 4.1e-10 41_[+2]_30 chrIV:980767-981279 4.1e-10 48_[-2]_23 chrIV:437517-438077 4.1e-10 29_[+2]_42 chrII:226838-227391 4.1e-10 15_[+2]_56 chrI:182332-182804 4.1e-10 51_[-2]_20 chrXIII:352044-352529 7.9e-10 48_[+2]_23 chrVIII:358287-358801 7.9e-10 41_[-2]_30 chrVIII:237667-238141 7.9e-10 51_[-2]_20 chrVI:157766-158243 7.9e-10 19_[-2]_52 chrII:36149-36633 7.9e-10 61_[+2]_10 chrXV:340107-340622 1.5e-09 23_[-2]_48 chrXI:490727-491280 1.5e-09 19_[+2]_52 chrX:233664-234278 1.5e-09 22_[+2]_49 chrV:492186-492626 1.5e-09 34_[-2]_37 chrIV:619722-620283 1.5e-09 55_[-2]_16 chrXV:274462-274979 2e-09 7_[+2]_64 chrXII:605136-605623 8.4e-09 69_[-2]_2 chrIV:884153-884656 8.4e-09 11_[+2]_60 chrXIII:586399-586919 9.6e-09 66_[-2]_5 chrXIII:372174-372755 9.6e-09 70_[-2]_1 chrXII:687644-688177 9.6e-09 38_[-2]_33 chrXI:379457-379977 9.6e-09 17_[+2]_54 chrXI:307908-308436 9.6e-09 61_[-2]_10 chrX:378131-378566 9.6e-09 66_[+2]_5 chrVIII:85040-85602 9.6e-09 66_[-2]_5 chrVII:823265-823727 9.6e-09 40_[+2]_31 chrVII:412115-412599 9.6e-09 26_[-2]_45 chrVII:73663-74150 9.6e-09 12_[-2]_59 chrV:469232-469759 9.6e-09 16_[+2]_55 chrXIV:602092-602558 1.3e-08 41_[+2]_30 chrXIV:569675-570147 1.3e-08 45_[-2]_26 chrXII:1051856-1052383 1.3e-08 41_[-2]_30 chrXII:731895-732336 1.3e-08 29_[+2]_42 chrX:617693-618164 1.3e-08 45_[+2]_26 chrV:551024-551588 1.3e-08 68_[-2]_3 chrV:443058-443518 1.3e-08 3_[-2]_68 chrIX:210478-210952 1.3e-08 4_[+2]_67 chrIX:183272-183737 1.3e-08 25_[-2]_46 chrXVI:810452-810876 5e-08 66_[+2]_5 chrXV:487221-487748 5e-08 9_[+2]_62 chrXV:228038-228631 5e-08 51_[+2]_20 chrXII:975787-976287 5e-08 35_[-2]_36 chrXI:74366-74942 5e-08 24_[+2]_47 chrVII:730923-731420 5e-08 20_[+2]_51 chrVI:137238-137909 5e-08 2_[-2]_69 chrIII:127515-127916 5e-08 55_[+2]_16 chrVIII:134062-134672 5.6e-08 8_[+2]_63 chrV:250092-250552 5.6e-08 18_[+2]_53 chrV:130857-131384 5.6e-08 49_[-2]_22 chrIV:802558-803023 5.6e-08 28_[-2]_43 chrIV:644929-645500 5.6e-08 26_[-2]_45 chrIII:168103-168617 5.6e-08 28_[-2]_43 chrII:350597-351088 5.6e-08 39_[+2]_32 chrXII:628160-628672 8.9e-08 21_[+2]_50 chrVII:857218-857718 8.9e-08 39_[-2]_32 chrVII:205253-205763 8.9e-08 67_[+2]_4 chrIV:1461481-1462095 8.9e-08 57_[-2]_14 chrXIV:96030-96544 1.2e-07 41_[-2]_30 chrVII:779390-779902 1.2e-07 24_[+2]_47 chrXII:962805-963316 1.6e-07 11_[-2]_60 chrX:424271-424754 1.6e-07 19_[-2]_52 chrIV:519521-519961 1.6e-07 56_[+2]_15 chrX:538344-538828 4.4e-07 22_[+2]_49 chrIV:1150658-1151182 4.8e-07 37_[-2]_34 chrXV:571717-572170 8.6e-07 69_[+2]_2 chrXII:426900-427463 8.6e-07 5_[+2]_66 chrXI:513204-513635 8.6e-07 [-2]_71 chrX:541297-541801 8.6e-07 13_[+2]_58 chrX:374172-374846 8.6e-07 2_[-2]_69 chrVII:544331-544889 8.6e-07 54_[-2]_17 chrVII:531395-531805 8.6e-07 64_[+2]_7 chrIX:336125-336644 8.6e-07 52_[-2]_19 chrIX:324116-324623 8.6e-07 21_[-2]_50 chrIV:568654-569283 8.6e-07 50_[+2]_21 chrXV:976187-976702 1e-06 31_[+2]_40 chrX:422665-423255 1e-06 31_[+2]_40 chrIV:1175583-1176078 1e-06 53_[+2]_18 chrXVI:209969-210531 1.6e-06 29_[-2]_42 chrXIII:290532-291164 1.6e-06 7_[+2]_64 chrVII:541614-542175 1.6e-06 10_[+2]_61 chrVII:401369-401805 1.6e-06 27_[-2]_44 chrV:176872-177419 1.6e-06 8_[+2]_63 chrIX:370203-370644 1.6e-06 48_[+2]_23 chrIII:82256-82767 1.6e-06 38_[-2]_33 chrII:644948-645413 1.6e-06 41_[+2]_30 chrIX:197354-197812 2.1e-06 63_[+2]_8 chrIV:1016972-1017518 2.1e-06 49_[-2]_22 chrXV:287980-288433 2.3e-06 40_[+2]_31 chrXIII:837683-838241 2.3e-06 20_[+2]_51 chrXIII:168576-169082 2.3e-06 20_[+2]_51 chrX:542758-543306 2.3e-06 28_[-2]_43 chrX:353901-354558 2.3e-06 69_[+2]_2 chrVI:210454-210908 2.3e-06 42_[-2]_29 chrVI:167226-167697 2.3e-06 30_[+2]_41 chrXIII:362853-363344 2.7e-06 20_[+2]_51 chrXI:313167-313678 2.7e-06 66_[-2]_5 chrXI:302667-303250 2.7e-06 13_[+2]_58 chrX:415761-416319 2.7e-06 13_[-2]_58 chrVIII:62546-62976 2.7e-06 48_[+2]_23 chrVII:878559-879053 2.7e-06 26_[-2]_45 chrVII:287118-287743 2.7e-06 42_[-2]_29 chrVII:110396-110925 2.7e-06 52_[-2]_19 chrV:434359-434804 2.7e-06 47_[-2]_24 chrIV:1256861-1257316 4.5e-06 7_[-2]_64 chrIV:1075294-1075762 4.5e-06 32_[-2]_39 chrII:326553-327115 4.5e-06 47_[-2]_24 chrIV:83316-83816 5.7e-06 27_[+2]_44 chrXIII:747740-748182 9e-06 19_[-2]_52 chrXIII:131590-132118 9e-06 59_[-2]_12 chrXI:162262-162760 9e-06 64_[-2]_7 chrVII:736140-736645 9e-06 1_[+2]_70 chrII:405579-406225 9e-06 29_[+2]_42 chrIV:27-398 1.3e-05 67_[-2]_4 chrXVI:338660-339141 1.7e-05 36_[-2]_35 chrX:517612-518102 1.7e-05 44_[-2]_27 chrXVI:775630-776065 2e-05 6_[-2]_65 chrVII:706924-707356 2e-05 56_[-2]_15 chrII:642852-643308 2e-05 15_[-2]_56 chrIII:262678-262980 2.1e-05 6_[+2]_65 chrXVI:744053-744584 2.4e-05 19_[+2]_52 chrVII:1004000-1004449 2.4e-05 45_[+2]_26 chrVII:661513-662002 2.4e-05 45_[+2]_26 chrXV:300860-301440 2.6e-05 1_[+2]_70 chrVIII:388677-389215 2.6e-05 65_[-2]_6 chrIV:1300563-1301381 2.7e-05 [-2]_71 chrXIV:546922-547428 0.00034 4_[-2]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTRGYCBARTKGKTARMGCGNYMSRYTY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BDTRGYCBARTKGKTARMGCGNYMSRYTY width=29 seqs=165 chrXII:875170-875669 ( 12) GTTAGCTCAGTTGGTAGAGCGTTCGGCTT 1 chrXI:578735-579292 ( 7) GTTAGCTCAGTTGGTAGAGCGTTCGGCTT 1 chrVII:115273-115772 ( 21) GTTAGCTCAGTTGGTAGAGCGTTCGGCTT 1 chrXII:214654-215186 ( 52) CATGGCGCAGTTGGTAGCGCGCTTCCCTT 1 chrXVI:689317-689849 ( 37) TATGGCCGAGTGGTTAAGGCGACAGACTT 1 chrV:288183-288762 ( 69) TATGGCCGAGTGGTTAAGGCGACAGACTT 1 chrXVI:856704-857129 ( 41) TGTGGCGTAGTCGGTAGCGCGCTCCCTTA 1 chrXIII:768137-768660 ( 60) TGTGGCGTAGTCGGTAGCGCGCTCCCTTA 1 chrXIII:320975-321381 ( 58) TGTGGCGTAGTCGGTAGCGCGCTCCCTTA 1 chrXI:517765-518189 ( 66) TGTGGCGTAGTCGGTAGCGCGCTCCCTTA 1 chrXI:219668-220103 ( 65) TGTGGCGTAGTCGGTAGCGCGCTCCCTTA 1 chrX:197134-197622 ( 24) TGTGGCGTAGTCGGTAGCGCGCTCCCTTA 1 chrVII:774107-774675 ( 13) TGTGGCGTAGTCGGTAGCGCGCTCCCTTA 1 chrVI:204739-205241 ( 23) TGTGGCGTAGTCGGTAGCGCGCTCCCTTA 1 chrIV:410138-410714 ( 8) TGTGGCGTAGTCGGTAGCGCGCTCCCTTA 1 chrXVI:581823-582393 ( 9) GTTGGCGCAATCGGTAGCGCGTATGACTC 1 chrXIII:480407-480925 ( 44) GTTGGCGCAATCGGTAGCGCGTATGACTC 1 chrXI:202808-203293 ( 4) GTTGGCGCAATCGGTAGCGCGTATGACTC 1 chrX:414759-415259 ( 12) GTTGGCGCAATCGGTAGCGCGTATGACTC 1 chrVII:876114-876701 ( 42) GTTGGCGCAATCGGTAGCGCGTATGACTC 1 chrVI:226522-226983 ( 25) GTTGGCGCAATCGGTAGCGCGTATGACTC 1 chrV:435594-436040 ( 24) GTTGGCGCAATCGGTAGCGCGTATGACTC 1 chrV:135167-135724 ( 69) GTTGGCGCAATCGGTAGCGCGTATGACTC 1 chrIX:299973-300536 ( 63) GTTGGCGCAATCGGTAGCGCGTATGACTC 1 chrIV:1352269-1352754 ( 44) GTTGGCGCAATCGGTAGCGCGTATGACTC 1 chrIV:1201462-1202057 ( 46) GTTGGCGCAATCGGTAGCGCGTATGACTC 1 chrIII:227750-228216 ( 14) TATGGCCGAGTGGTTAAGGCGAGAGACTC 1 chrXV:353809-354331 ( 60) TATGGCCAAGTTGGTAAGGCGCCACACTA 1 chrVIII:115888-116417 ( 44) TATGGCCAAGTTGGTAAGGCGCCACACTA 1 chrIX:325532-326073 ( 1) TATGGCCAAGTTGGTAAGGCGCCACACTA 1 chrIX:174794-175318 ( 30) TATGGCCAAGTTGGTAAGGCGCCACACTA 1 chrIV:433989-434575 ( 71) TATGGCCAAGTTGGTAAGGCGCCACACTA 1 chrII:266160-266692 ( 7) TATGGCCAAGTTGGTAAGGCGCCACACTA 1 chrXIV:374664-375115 ( 35) CTTAGCTCAGTTGGGAGAGCGCCAGACTG 1 chrIV:1095111-1095716 ( 65) CTTAGCTCAGTTGGGAGAGCGCCAGACTG 1 chrXIII:258977-259488 ( 24) CTTGGCCGAGTGGTTAAGGCGAAAGATTA 1 chrXII:167764-168280 ( 20) CTTGGCCGAGTGGTTAAGGCGAAAGATTA 1 chrX:523871-524333 ( 8) CTTGGCCGAGTGGTTAAGGCGAAAGATTA 1 chrVIII:132793-133382 ( 37) CTTGGCCGAGTGGTTAAGGCGAAAGATTA 1 chrIV:1305355-1305932 ( 42) CTTGGCCGAGTGGTTAAGGCGAAAGATTA 1 chrIV:980767-981279 ( 49) CTTGGCCGAGTGGTTAAGGCGAAAGATTA 1 chrIV:437517-438077 ( 30) CTTGGCCGAGTGGTTAAGGCGAAAGATTA 1 chrII:226838-227391 ( 16) CTTGGCCGAGTGGTTAAGGCGAAAGATTA 1 chrI:182332-182804 ( 52) CTTGGCCGAGTGGTTAAGGCGAAAGATTA 1 chrXIII:352044-352529 ( 49) TTTAGCTCAGTTGGGAGAGCGCCAGACTG 1 chrVIII:358287-358801 ( 42) TTTAGCTCAGTTGGGAGAGCGCCAGACTG 1 chrVIII:237667-238141 ( 52) TTTAGCTCAGTTGGGAGAGCGCCAGACTG 1 chrVI:157766-158243 ( 20) TTTAGCTCAGTTGGGAGAGCGCCAGACTG 1 chrII:36149-36633 ( 62) TTTAGCTCAGTTGGGAGAGCGCCAGACTG 1 chrXV:340107-340622 ( 24) CGTGGCCCAATGGTCACGGCGTCTGGCTA 1 chrXI:490727-491280 ( 20) CGTGGCCCAATGGTCACGGCGTCTGGCTA 1 chrX:233664-234278 ( 23) CGTGGCCCAATGGTCACGGCGTCTGGCTA 1 chrV:492186-492626 ( 35) CGTGGCCCAATGGTCACGGCGTCTGGCTA 1 chrIV:619722-620283 ( 56) CGTGGCCCAATGGTCACGGCGTCTGGCTA 1 chrXV:274462-274979 ( 8) AGTGGCCGAGTGGTTAAGGCGATGCCCTG 1 chrXII:605136-605623 ( 70) TGTAGCTCAGTGGTTAGAGCTTCGTGCTT 1 chrIV:884153-884656 ( 12) TGTAGCTCAGTGGTTAGAGCTTCGTGCTT 1 chrXIII:586399-586919 ( 67) CGTGGTCTAGTCGGTTATGGCATCTGCTT 1 chrXIII:372174-372755 ( 71) CGTGGTCTAGTCGGTTATGGCATCTGCTT 1 chrXII:687644-688177 ( 39) CGTGGTCTAGTCGGTTATGGCATCTGCTT 1 chrXI:379457-379977 ( 18) CGTGGTCTAGTCGGTTATGGCATCTGCTT 1 chrXI:307908-308436 ( 62) CGTGGTCTAGTCGGTTATGGCATCTGCTT 1 chrX:378131-378566 ( 67) CGTGGTCTAGTCGGTTATGGCATCTGCTT 1 chrVIII:85040-85602 ( 67) CGTGGTCTAGTCGGTTATGGCATCTGCTT 1 chrVII:823265-823727 ( 41) CGTGGTCTAGTCGGTTATGGCATCTGCTT 1 chrVII:412115-412599 ( 27) CGTGGTCTAGTCGGTTATGGCATCTGCTT 1 chrVII:73663-74150 ( 13) CGTGGTCTAGTCGGTTATGGCATCTGCTT 1 chrV:469232-469759 ( 17) CGTGGTCTAGTCGGTTATGGCATCTGCTT 1 chrXIV:602092-602558 ( 42) CTTGGCCCAGTTGGTTAAGGCACCGTGCT 1 chrXIV:569675-570147 ( 46) CTTGGCCCAGTTGGTTAAGGCACCGTGCT 1 chrXII:1051856-1052383 ( 42) CTTGGCCCAGTTGGTTAAGGCACCGTGCT 1 chrXII:731895-732336 ( 30) TTTGGCCGAGTGGTTTAAGGCGTCAGATT 1 chrX:617693-618164 ( 46) TTTGGCCGAGTGGTTTAAGGCGTCAGATT 1 chrV:551024-551588 ( 69) CTTGGCCCAGTTGGTTAAGGCACCGTGCT 1 chrV:443058-443518 ( 4) CTTGGCCCAGTTGGTTAAGGCACCGTGCT 1 chrIX:210478-210952 ( 5) CTTGGCCCAGTTGGTTAAGGCACCGTGCT 1 chrIX:183272-183737 ( 26) CTTGGCCCAGTTGGTTAAGGCACCGTGCT 1 chrXVI:810452-810876 ( 67) CATGGCCAAGTTGGTTAAGGCGTGCGACT 1 chrXV:487221-487748 ( 10) CATGGCCAAGTTGGTTAAGGCGTGCGACT 1 chrXV:228038-228631 ( 52) CATGGCCAAGTTGGTTAAGGCGTGCGACT 1 chrXII:975787-976287 ( 36) CATGGCCAAGTTGGTTAAGGCGTGCGACT 1 chrXI:74366-74942 ( 25) CATGGCCAAGTTGGTTAAGGCGTGCGACT 1 chrVII:730923-731420 ( 21) CATGGCCAAGTTGGTTAAGGCGTGCGACT 1 chrVI:137238-137909 ( 3) CATGGCCAAGTTGGTTAAGGCGTGCGACT 1 chrIII:127515-127916 ( 56) CATGGCCAAGTTGGTTAAGGCGTGCGACT 1 chrVIII:134062-134672 ( 9) TATAGTGTAGTGGTTATCACTTTCGGTTT 1 chrV:250092-250552 ( 19) TATAGTGTAGTGGTTATCACTTTCGGTTT 1 chrV:130857-131384 ( 50) TATAGTGTAGTGGTTATCACTTTCGGTTT 1 chrIV:802558-803023 ( 29) TATAGTGTAGTGGTTATCACTTTCGGTTT 1 chrIV:644929-645500 ( 27) TATAGTGTAGTGGTTATCACTTTCGGTTT 1 chrIII:168103-168617 ( 29) TATAGTGTAGTGGTTATCACTTTCGGTTT 1 chrII:350597-351088 ( 40) TATAGTGTAGTGGTTATCACTTTCGGTTT 1 chrXII:628160-628672 ( 22) TTTGGCCGAGCGGTCTAAGGCGCCTGATT 1 chrVII:857218-857718 ( 40) TTTGGCCGAGCGGTCTAAGGCGCCTGATT 1 chrVII:205253-205763 ( 68) TTTGGCCGAGCGGTCTAAGGCGCCTGATT 1 chrIV:1461481-1462095 ( 58) TTTGGCCGAGCGGTCTAAGGCGCCTGATT 1 chrXIV:96030-96544 ( 42) GTTAGTGTAGTGGTTATCATCCCACCCTT 1 chrVII:779390-779902 ( 25) GTTAGTGTAGTGGTTATCATCCCACCCTT 1 chrXII:962805-963316 ( 12) GTTGGCCGAGTGGTCTAAGGCGGCAGACT 1 chrX:424271-424754 ( 20) GTTGGCCGAGTGGTCTAAGGCGGCAGACT 1 chrIV:519521-519961 ( 57) GTTGGCCGAGTGGTCTAAGGCGGCAGACT 1 chrX:538344-538828 ( 23) CGTTGGCGTAATGGTAACGCGTCTCCCTC 1 chrIV:1150658-1151182 ( 38) AGTGGCCGAGTGGTTAAGGCGATGCCTGC 1 chrXV:571717-572170 ( 70) GATAGTTTAATGGTCAGAATGGGCGCTTG 1 chrXII:426900-427463 ( 6) GATAGTTTAATGGTCAGAATGGGCGCTTG 1 chrXI:513204-513635 ( 1) GATAGTTTAATGGTCAGAATGGGCGCTTG 1 chrX:541297-541801 ( 14) GATAGTTTAATGGTCAGAATGGGCGCTTG 1 chrX:374172-374846 ( 3) GATAGTTTAATGGTCAGAATGGGCGCTTG 1 chrVII:544331-544889 ( 55) GATAGTTTAATGGTCAGAATGGGCGCTTG 1 chrVII:531395-531805 ( 65) GATAGTTTAATGGTCAGAATGGGCGCTTG 1 chrIX:336125-336644 ( 53) GATAGTTTAATGGTCAGAATGGGCGCTTG 1 chrIX:324116-324623 ( 22) GATAGTTTAATGGTCAGAATGGGCGCTTG 1 chrIV:568654-569283 ( 51) GATAGTTTAATGGTCAGAATGGGCGCTTG 1 chrXV:976187-976702 ( 32) AGTAGCTCAGTAGGAAGAGCGTCAGTCTC 1 chrX:422665-423255 ( 32) AGTAGCTCAGTAGGAAGAGCGTCAGTCTC 1 chrIV:1175583-1176078 ( 54) AGTAGCTCAGTAGGAAGAGCGTCAGTCTC 1 chrXVI:209969-210531 ( 30) TATAGTGTAACGGCTATCACATCACGCTT 1 chrXIII:290532-291164 ( 8) TATAGTGTAACGGCTATCACATCACGCTT 1 chrVII:541614-542175 ( 11) TATAGTGTAACGGCTATCACATCACGCTT 1 chrVII:401369-401805 ( 28) TATAGTGTAACGGCTATCACATCACGCTT 1 chrV:176872-177419 ( 9) TATAGTGTAACGGCTATCACATCACGCTT 1 chrIX:370203-370644 ( 49) TATAGTGTAACGGCTATCACATCACGCTT 1 chrIII:82256-82767 ( 39) TATAGTGTAACGGCTATCACATCACGCTT 1 chrII:644948-645413 ( 42) TATAGTGTAACGGCTATCACATCACGCTT 1 chrIX:197354-197812 ( 64) TGTAGTGTAACGGCTATCACATCACGTTC 1 chrIV:1016972-1017518 ( 50) TGTAGTGTAACGGCTATCACATCACGTTC 1 chrXV:287980-288433 ( 41) GGTAGCCAAGTTGGTTTAAGGCGCAAGAC 1 chrXIII:837683-838241 ( 21) GGTAGCCAAGTTGGTTTAAGGCGCAAGAC 1 chrXIII:168576-169082 ( 21) GGTAGCCAAGTTGGTTTAAGGCGCAAGAC 1 chrX:542758-543306 ( 29) GGTAGCCAAGTTGGTTTAAGGCGCAAGAC 1 chrX:353901-354558 ( 70) GGTAGCCAAGTTGGTTTAAGGCGCAAGAC 1 chrVI:210454-210908 ( 43) GGTAGCCAAGTTGGTTTAAGGCGCAAGAC 1 chrVI:167226-167697 ( 31) GGTAGCCAAGTTGGTTTAAGGCGCAAGAC 1 chrXIII:362853-363344 ( 21) CTTAGTATAGTGGTTAGTACACATCGTTG 1 chrXI:313167-313678 ( 67) CTTAGTATAGTGGTTAGTACACATCGTTG 1 chrXI:302667-303250 ( 14) CGGTGGCTCAATGGTAGAGCTTTCGACTC 1 chrX:415761-416319 ( 14) CGGTGGCTCAATGGTAGAGCTTTCGACTC 1 chrVIII:62546-62976 ( 49) CTTAGTATAGTGGTTAGTACACATCGTTG 1 chrVII:878559-879053 ( 27) CGGTGGCTCAATGGTAGAGCTTTCGACTC 1 chrVII:287118-287743 ( 43) CGGTGGCTCAATGGTAGAGCTTTCGACTC 1 chrVII:110396-110925 ( 53) CTTAGTATAGTGGTTAGTACACATCGTTG 1 chrV:434359-434804 ( 48) CTTAGTATAGTGGTTAGTACACATCGTTG 1 chrIV:1256861-1257316 ( 8) AGTGGTTCAGTGGTTAGAATTCATGCTTC 1 chrIV:1075294-1075762 ( 33) AATAGTGTAGCGGCTATCACGTTGCCTTC 1 chrII:326553-327115 ( 48) AATGGTCCAGTGGTTCAAGACGTCGCCTT 1 chrIV:83316-83816 ( 28) CTTAGCGCAAGTGGTTTAGTGGTAAAATC 1 chrXIII:747740-748182 ( 20) GCGTGGCGTAATGGCAACGCGTCTGACTT 1 chrXIII:131590-132118 ( 60) GCGTGGCGTAATGGCAACGCGTCTGACTT 1 chrXI:162262-162760 ( 65) GCGTGGCGTAATGGCAACGCGTCTGACTT 1 chrVII:736140-736645 ( 2) GCGTGGCGTAATGGCAACGCGTCTGACTT 1 chrII:405579-406225 ( 30) GCGTGGCGTAATGGCAACGCGTCTGACTT 1 chrIV:27-398 ( 68) GATGGTTGAGTGGGGCAGGGTAACGAGTG 1 chrXVI:338660-339141 ( 37) CCGTGGCGCAGTGGAAGCGCGCAGGGCTC 1 chrX:517612-518102 ( 45) CCGTGGCGCAGTGGAAGCGCGCAGGGCTC 1 chrXVI:775630-776065 ( 7) GTATGGCGCAGTGGTAGCGCAGCAGATTG 1 chrVII:706924-707356 ( 57) GTATGGCGCAGTGGTAGCGCAGCAGATTG 1 chrII:642852-643308 ( 16) GTATGGCGCAGTGGTAGCGCAGCAGATTG 1 chrIII:262678-262980 ( 7) GGTAGCGATAATGTAAGAGGGTTCTGTCT 1 chrXVI:744053-744584 ( 20) CCTTAGCTTAGTGGTAGAGCGTTGCACTT 1 chrVII:1004000-1004449 ( 46) CCTTAGCTTAGTGGTAGAGCGTTGCACTT 1 chrVII:661513-662002 ( 46) CCTTAGCTTAGTGGTAGAGCGTTGCACTT 1 chrXV:300860-301440 ( 2) TGTGGTCTAGTGGTATGATTCTCGCTTTG 1 chrVIII:388677-389215 ( 66) TGTGGTCTAGTGGTATGATTCTCGCTTTG 1 chrIV:1300563-1301381 ( 1) AGTATGCGAGTTGGGAGCATGCGAGGTTG 1 chrXIV:546922-547428 ( 5) CTTTGTCTTCCTGTTTAGGCAGGAAGTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTRGYCBARTKGKTARMGCGNYMSRYTY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 38664 bayes= 6.36772 E= 3.3e-433 -252 96 57 -5 -17 -163 72 17 -410 -1401 -149 155 22 -1401 148 -144 -410 -1401 238 -569 -1401 161 -70 1 -337 154 48 -93 -123 44 22 33 149 -178 -1401 -223 12 -495 181 -1401 -223 -95 -178 132 -410 1 118 24 -1401 -1401 242 -1401 -1401 -149 161 22 -269 -19 -178 123 118 -395 -1401 -17 31 -263 114 -88 42 78 -19 -169 -23 -1401 195 -469 -569 174 51 -160 -144 37 156 -178 -65 41 10 17 -83 93 -43 7 -17 118 -63 -83 -188 69 143 -152 22 -14 107 -210 -152 135 -104 4 -288 -63 -495 141 -83 18 1 44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTRGYCBARTKGKTARMGCGNYMSRYTY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 165 E= 3.3e-433 0.054545 0.363636 0.278788 0.303030 0.278788 0.060606 0.309091 0.351515 0.018182 0.000000 0.066667 0.915152 0.363636 0.000000 0.521212 0.115152 0.018182 0.000000 0.975758 0.006061 0.000000 0.569697 0.115152 0.315152 0.030303 0.545455 0.260606 0.163636 0.133333 0.254545 0.218182 0.393939 0.878788 0.054545 0.000000 0.066667 0.339394 0.006061 0.654545 0.000000 0.066667 0.096970 0.054545 0.781818 0.018182 0.187879 0.424242 0.369697 0.000000 0.000000 1.000000 0.000000 0.000000 0.066667 0.569697 0.363636 0.048485 0.163636 0.054545 0.733333 0.709091 0.012121 0.000000 0.278788 0.387879 0.030303 0.412121 0.169697 0.418182 0.321212 0.163636 0.096970 0.266667 0.000000 0.721212 0.012121 0.006061 0.624242 0.266667 0.103030 0.115152 0.242424 0.551515 0.090909 0.200000 0.248485 0.200000 0.351515 0.175758 0.357576 0.139394 0.327273 0.278788 0.424242 0.121212 0.175758 0.084848 0.303030 0.503030 0.109091 0.363636 0.169697 0.393939 0.072727 0.109091 0.478788 0.090909 0.321212 0.042424 0.121212 0.006061 0.830303 0.175758 0.212121 0.187879 0.424242 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTRGYCBARTKGKTARMGCGNYMSRYTY MEME-2 regular expression -------------------------------------------------------------------------------- [CTG][TGA]T[GA]G[CT][CG][TCG]A[GA]T[GT]G[GT]T[AT][GA][AC][GA][CG][GC][TCAG][CT][CA][GC][GA][CT]T[TC] -------------------------------------------------------------------------------- Time 527.30 secs. ******************************************************************************** ******************************************************************************** MOTIF CSBTGDATTTTACCACTAVACCACTTGCVC MEME-3 width = 30 sites = 21 llr = 618 E-value = 9.6e-122 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSBTGDATTTTACCACTAVACCACTTGCVC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::3:38::3:a::7::a5a1:a:3:::2: pos.-specific C 752::::23:::8a2a::2:8a:a:3283a probability G 353:a5::::::2:::::3:1:::::8:5: matrix T ::57:22877a:::1:a:::::::77:2:: bits 2.4 * * * * * * 2.2 * * * * * * 1.9 * * * * * * 1.7 * **** *** * *** * Relative 1.5 * * **** *** * *** ** * Entropy 1.2 ** * **** *** ***** ** * (42.5 bits) 1.0 ** * *** **** *** ***** *** * 0.7 ** ** ************ *********** 0.5 ****************************** 0.2 ****************************** 0.0 ------------------------------ Multilevel CCTTGGATTTTACCACTAAACCACTTGCGC consensus GGGA ATCCA G C G AC TC sequence C T C A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSBTGDATTTTACCACTAVACCACTTGCVC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXVI:860136-860690 - 16 2.77e-18 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTGTTATTTA chrXVI:572003-572629 - 3 2.77e-18 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC GA chrXV:281947-282449 - 16 2.77e-18 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC GCTTTCATGT chrXV:226440-226915 + 25 2.77e-18 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TGAATTTCTT chrXIII:183765-184187 + 13 2.77e-18 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC GATCTTTATT chrX:396548-397036 + 25 2.77e-18 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTACTTTTGA chrVII:930717-931239 + 66 2.77e-18 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTACT chrVII:845377-845936 - 43 2.77e-18 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTGTTATTTA chrVI:161994-162471 - 46 2.77e-18 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTGTTTTCTT chrIV:992595-993091 - 39 2.77e-18 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TCACAATTGT chrXV:464232-464693 - 38 7.76e-14 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC TTGTTAACTT chrXIII:195908-196420 + 27 7.76e-14 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC TTGTGAACTT chrVI:101130-101663 - 30 7.76e-14 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC GAATTATTGT chrI:138929-139379 - 48 7.76e-14 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC GTACTAATTG chrXIV:631693-632135 + 24 3.34e-13 CGCACCCTAA GCGAGAATCATACCTCTAGACCACACGCCC GGTAGAAGTT chrIII:123370-123833 + 68 3.34e-13 CGCACCCTAA GCGAGAATCATACCTCTAGACCACACGCCC TCC chrXV:1091088-1091291 - 22 1.49e-12 GAAAATGAAA CCCTGTTCTTTAGCCCTACAGCACTTCTAC ATAGCCCTAA chrXIII:20-213 + 68 1.49e-12 GAAAATGAAA CCCTGTTCTTTAGCCCTACAGCACTTCTAC ATA chrXII:4-288 + 60 1.49e-12 GAAAATGAAA CCCTGTTCTTTAGCCCTACAGCACTTCTAC ATAGCCCTAA chrVIII:20-270 + 23 2.08e-12 GAAAATGAAA CCCTGTTCTTTAGCCCTACAACACTTCTAC ATAGCCCTAA chrIX:0-275 + 71 2.40e-11 GAAAATGAAA TCCTGTTCTTTAGCCCTACAACACTTTTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSBTGDATTTTACCACTAVACCACTTGCVC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:860136-860690 2.8e-18 15_[-3]_55 chrXVI:572003-572629 2.8e-18 2_[-3]_68 chrXV:281947-282449 2.8e-18 15_[-3]_55 chrXV:226440-226915 2.8e-18 24_[+3]_46 chrXIII:183765-184187 2.8e-18 12_[+3]_58 chrX:396548-397036 2.8e-18 24_[+3]_46 chrVII:930717-931239 2.8e-18 65_[+3]_5 chrVII:845377-845936 2.8e-18 42_[-3]_28 chrVI:161994-162471 2.8e-18 45_[-3]_25 chrIV:992595-993091 2.8e-18 38_[-3]_32 chrXV:464232-464693 7.8e-14 37_[-3]_33 chrXIII:195908-196420 7.8e-14 26_[+3]_44 chrVI:101130-101663 7.8e-14 29_[-3]_41 chrI:138929-139379 7.8e-14 47_[-3]_23 chrXIV:631693-632135 3.3e-13 23_[+3]_47 chrIII:123370-123833 3.3e-13 67_[+3]_3 chrXV:1091088-1091291 1.5e-12 21_[-3]_49 chrXIII:20-213 1.5e-12 67_[+3]_3 chrXII:4-288 1.5e-12 59_[+3]_11 chrVIII:20-270 2.1e-12 22_[+3]_48 chrIX:0-275 2.4e-11 70_[+3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSBTGDATTTTACCACTAVACCACTTGCVC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSBTGDATTTTACCACTAVACCACTTGCVC width=30 seqs=21 chrXVI:860136-860690 ( 16) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrXVI:572003-572629 ( 3) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrXV:281947-282449 ( 16) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrXV:226440-226915 ( 25) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrXIII:183765-184187 ( 13) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrX:396548-397036 ( 25) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrVII:930717-931239 ( 66) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrVII:845377-845936 ( 43) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrVI:161994-162471 ( 46) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrIV:992595-993091 ( 39) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrXV:464232-464693 ( 38) GCGAGAATCATACCACTAGACCACACGCCC 1 chrXIII:195908-196420 ( 27) GCGAGAATCATACCACTAGACCACACGCCC 1 chrVI:101130-101663 ( 30) GCGAGAATCATACCACTAGACCACACGCCC 1 chrI:138929-139379 ( 48) GCGAGAATCATACCACTAGACCACACGCCC 1 chrXIV:631693-632135 ( 24) GCGAGAATCATACCTCTAGACCACACGCCC 1 chrIII:123370-123833 ( 68) GCGAGAATCATACCTCTAGACCACACGCCC 1 chrXV:1091088-1091291 ( 22) CCCTGTTCTTTAGCCCTACAGCACTTCTAC 1 chrXIII:20-213 ( 68) CCCTGTTCTTTAGCCCTACAGCACTTCTAC 1 chrXII:4-288 ( 60) CCCTGTTCTTTAGCCCTACAGCACTTCTAC 1 chrVIII:20-270 ( 23) CCCTGTTCTTTAGCCCTACAACACTTCTAC 1 chrIX:0-275 ( 71) TCCTGTTCTTTAGCCCTACAACACTTTTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSBTGDATTTTACCACTAVACCACTTGCVC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 38127 bayes= 11.1304 E= 9.6e-122 -1104 183 61 -271 -1104 148 135 -1104 -1104 35 61 61 -13 -1104 -1104 119 -1104 -1104 242 -1104 -13 -1104 135 -39 128 -1104 -1104 -39 -1104 35 -1104 128 -1104 61 -1104 119 -13 -1104 -1104 119 -1104 -1104 -1104 168 168 -1104 -1104 -1104 -1104 202 35 -1104 -1104 242 -1104 -1104 109 35 -1104 -171 -1104 242 -1104 -1104 -1104 -1104 -1104 168 168 -1104 -1104 -1104 61 35 61 -1104 168 -1104 -1104 -1104 -171 202 -39 -1104 -1104 242 -1104 -1104 168 -1104 -1104 -1104 -1104 242 -1104 -1104 -13 -1104 -1104 119 -1104 61 -1104 119 -1104 3 202 -271 -1104 202 -1104 -39 -39 61 135 -1104 -1104 242 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSBTGDATTTTACCACTAVACCACTTGCVC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 21 E= 9.6e-122 0.000000 0.666667 0.285714 0.047619 0.000000 0.523810 0.476190 0.000000 0.000000 0.238095 0.285714 0.476190 0.285714 0.000000 0.000000 0.714286 0.000000 0.000000 1.000000 0.000000 0.285714 0.000000 0.476190 0.238095 0.761905 0.000000 0.000000 0.238095 0.000000 0.238095 0.000000 0.761905 0.000000 0.285714 0.000000 0.714286 0.285714 0.000000 0.000000 0.714286 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.761905 0.238095 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.238095 0.000000 0.095238 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.476190 0.238095 0.285714 0.000000 1.000000 0.000000 0.000000 0.000000 0.095238 0.761905 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.000000 0.000000 0.714286 0.000000 0.285714 0.000000 0.714286 0.000000 0.190476 0.761905 0.047619 0.000000 0.761905 0.000000 0.238095 0.238095 0.285714 0.476190 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSBTGDATTTTACCACTAVACCACTTGCVC MEME-3 regular expression -------------------------------------------------------------------------------- [CG][CG][TGC][TA]G[GAT][AT][TC][TC][TA]TA[CG]C[AC]CTA[AGC]ACCAC[TA][TC]G[CT][GCA]C -------------------------------------------------------------------------------- Time 753.78 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:1-1248 6.42e-01 100 chrI:71818-73615 4.38e-01 100 chrI:81883-82337 5.33e-02 100 chrI:138929-139379 3.61e-12 47_[-3(7.76e-14)]_23 chrI:166031-166632 1.34e-08 20_[-1(9.52e-13)]_51 chrI:180916-181479 3.07e-01 100 chrI:182332-182804 2.37e-08 51_[-2(4.10e-10)]_20 chrI:229098-230196 1.12e-01 100 chrII:9351-9963 1.20e-01 21_[-1(9.55e-05)]_50 chrII:36149-36633 8.19e-06 61_[+2(7.91e-10)]_10 chrII:44958-45403 9.96e-01 100 chrII:60489-61309 1.92e-01 100 chrII:87956-88574 7.34e-01 100 chrII:88962-90001 4.68e-01 100 chrII:165045-165448 2.22e-01 100 chrII:167770-168281 1.93e-01 100 chrII:181296-181663 9.34e-01 100 chrII:197246-197891 5.77e-09 11_[-1(6.80e-13)]_60 chrII:226838-227391 2.37e-08 15_[+2(4.10e-10)]_56 chrII:266160-266692 1.12e-13 6_[+2(1.45e-10)]_1_[-1(1.17e-10)]_\ 35 chrII:326553-327115 3.31e-10 16_[+1(1.31e-10)]_2_[-2(4.47e-06)]_\ 24 chrII:332267-332860 3.58e-01 100 chrII:347391-348011 9.47e-02 100 chrII:350597-351088 1.19e-11 39_[+2(5.60e-08)]_[-1(5.10e-11)]_3 chrII:405579-406225 1.54e-10 29_[+2(8.96e-06)]_1_[-1(9.32e-12)]_\ 12 chrII:415474-415917 7.62e-01 100 chrII:476865-477743 7.04e-01 100 chrII:504473-504737 2.25e-01 100 chrII:544520-544850 7.88e-01 100 chrII:592351-593326 7.81e-01 100 chrII:604048-607111 6.89e-02 100 chrII:642852-643308 1.70e-02 15_[-2(1.96e-05)]_56 chrII:644948-645413 6.00e-11 41_[+2(1.63e-06)]_[-1(4.55e-12)]_1 chrII:680354-682286 3.01e-01 100 chrIII:1-1787 1.03e-01 100 chrIII:11073-11573 9.97e-01 100 chrIII:13992-16901 2.61e-01 100 chrIII:58732-59039 4.73e-01 100 chrIII:68416-68647 9.42e-01 100 chrIII:78428-78863 1.23e-01 100 chrIII:82256-82767 6.90e-11 9_[+1(4.55e-12)]_[-2(1.63e-06)]_33 chrIII:123370-123833 1.02e-19 34_[+1(3.92e-12)]_4_[+3(3.34e-13)]_\ 3 chrIII:127515-127916 4.17e-04 55_[+2(4.98e-08)]_16 chrIII:142400-143008 3.40e-09 55_[+1(1.32e-12)]_16 chrIII:163422-163905 3.01e-01 100 chrIII:168103-168617 4.10e-06 28_[-2(5.60e-08)]_43 chrIII:177180-178781 6.03e-01 100 chrIII:227750-228216 8.84e-08 13_[+2(1.01e-10)]_58 chrIII:262678-262980 1.48e-02 6_[+2(2.10e-05)]_65 chrIII:292654-293048 7.65e-01 100 chrIII:294586-295935 5.11e-01 100 chrIII:315643-316620 1.90e-01 100 chrIV:27-398 4.36e-03 67_[-2(1.29e-05)]_4 chrIV:83316-83816 1.33e-25 31_[-3(2.77e-18)]_3_[-1(1.32e-12)]_\ 7 chrIV:117099-118207 5.49e-01 100 chrIV:125307-125686 6.55e-02 100 chrIV:130014-131021 7.17e-01 100 chrIV:217136-218049 2.65e-01 100 chrIV:221428-222399 9.96e-01 100 chrIV:229412-230697 4.94e-01 100 chrIV:307459-308871 8.49e-01 100 chrIV:321593-322544 5.32e-01 100 chrIV:340151-341678 6.67e-01 100 chrIV:358030-358485 4.38e-01 100 chrIV:359135-359858 3.34e-02 36_[-3(8.02e-05)]_34 chrIV:410138-410714 5.64e-16 7_[+2(2.15e-11)]_1_[-1(1.41e-11)]_\ 34 chrIV:411208-411703 4.15e-02 100 chrIV:433989-434575 1.12e-13 40_[+1(1.17e-10)]_1_[-2(1.45e-10)]_\ 1 chrIV:437517-438077 2.37e-08 29_[+2(4.10e-10)]_42 chrIV:449451-449931 4.16e-01 100 chrIV:488496-489127 3.40e-07 44_[+1(1.31e-10)]_27 chrIV:490731-492020 8.06e-01 100 chrIV:519521-519961 8.79e-07 56_[+2(1.55e-07)]_15 chrIV:520734-521434 7.50e-01 100 chrIV:538863-539276 1.21e-01 100 chrIV:568654-569283 1.54e-03 50_[+2(8.62e-07)]_21 chrIV:579019-580784 2.22e-01 100 chrIV:619722-620283 6.43e-11 25_[+1(7.02e-09)]_1_[-2(1.48e-09)]_\ 16 chrIV:644929-645500 4.10e-06 26_[-2(5.60e-08)]_45 chrIV:667772-668261 4.65e-09 49_[+1(6.80e-13)]_22 chrIV:802558-803023 4.10e-06 28_[-2(5.60e-08)]_43 chrIV:835730-836348 2.37e-01 100 chrIV:884153-884656 5.82e-07 11_[+2(8.39e-09)]_60 chrIV:946108-946627 2.94e-05 45_[-1(1.20e-08)]_26 chrIV:980767-981279 2.37e-08 48_[-2(4.10e-10)]_23 chrIV:992595-993091 5.74e-25 38_[-3(2.77e-18)]_3_[-1(1.32e-12)] chrIV:1013401-1014004 2.67e-01 100 chrIV:1016972-1017518 7.99e-11 20_[+1(4.55e-12)]_[-2(2.12e-06)]_22 chrIV:1062793-1063083 8.22e-01 100 chrIV:1075294-1075762 1.24e-09 2_[+1(4.51e-11)]_1_[-2(4.47e-06)]_\ 39 chrIV:1095111-1095716 1.62e-11 15_[+1(1.61e-08)]_20_[-2(2.92e-10)]_\ 7 chrIV:1116851-1117085 9.85e-01 100 chrIV:1150658-1151182 9.27e-05 37_[-2(4.84e-07)]_34 chrIV:1175583-1176078 1.78e-03 53_[+2(1.04e-06)]_18 chrIV:1201462-1202057 2.01e-07 45_[+2(1.01e-10)]_26 chrIV:1256861-1257316 9.59e-06 11_[+3(8.93e-07)]_59 chrIV:1278608-1279038 3.32e-01 100 chrIV:1300563-1301381 2.35e-02 [-2(2.74e-05)]_71 chrIV:1305355-1305932 7.41e-08 41_[+2(4.10e-10)]_30 chrIV:1352269-1352754 1.40e-15 13_[+1(3.92e-12)]_1_[-2(1.01e-10)]_\ 28 chrIV:1354534-1356060 6.23e-01 100 chrIV:1359221-1359984 9.68e-01 100 chrIV:1401219-1401657 5.42e-01 100 chrIV:1450604-1451394 9.57e-01 100 chrIV:1461481-1462095 1.01e-04 57_[-2(8.90e-08)]_14 chrIV:1502026-1502853 6.82e-01 100 chrIV:1524091-1525679 8.77e-02 100 chrIX:0-275 1.46e-07 70_[+3(2.40e-11)] chrIX:68158-69568 9.98e-01 100 chrIX:99584-100070 5.11e-01 100 chrIX:131819-132120 3.27e-01 100 chrIX:174794-175318 1.12e-13 29_[+2(1.45e-10)]_1_[-1(1.17e-10)]_\ 12 chrIX:183272-183737 1.26e-04 25_[-2(1.25e-08)]_46 chrIX:197354-197812 3.50e-03 63_[+2(2.12e-06)]_8 chrIX:210478-210952 4.35e-14 4_[+2(1.25e-08)]_2_[-1(6.80e-13)]_\ 36 chrIX:248586-249418 4.76e-01 100 chrIX:254189-254601 4.77e-02 56_[-3(7.10e-05)]_14 chrIX:257303-257958 5.06e-01 100 chrIX:299973-300536 1.40e-15 32_[+1(3.92e-12)]_1_[-2(1.01e-10)]_\ 9 chrIX:316107-318206 9.91e-01 100 chrIX:324116-324623 2.58e-03 21_[-2(8.62e-07)]_50 chrIX:325532-326073 1.12e-13 [+2(1.45e-10)]_1_[-1(1.17e-10)]_41 chrIX:336125-336644 6.20e-08 23_[+1(3.89e-08)]_[-2(8.62e-07)]_19 chrIX:370203-370644 5.56e-03 48_[+2(1.63e-06)]_23 chrIX:382118-382432 2.70e-02 100 chrIX:438408-439887 7.09e-01 100 chrM:58206-59353 1.00e+00 100 chrM:59546-60024 9.98e-01 100 chrV:6122-6816 1.57e-02 49_[+1(9.81e-05)]_22 chrV:53466-54028 2.79e-01 100 chrV:61054-62189 4.90e-01 100 chrV:69029-69491 9.22e-03 100 chrV:85082-85507 2.38e-01 100 chrV:85773-86920 9.34e-01 100 chrV:99843-100338 4.75e-01 100 chrV:110346-110949 7.92e-01 100 chrV:117601-118336 7.49e-01 100 chrV:130857-131384 2.01e-11 20_[+1(9.28e-11)]_[-2(5.60e-08)]_22 chrV:135167-135724 1.40e-15 38_[+1(3.92e-12)]_1_[-2(1.01e-10)]_\ 3 chrV:138422-140927 5.47e-01 100 chrV:176872-177419 6.90e-11 8_[+2(1.63e-06)]_[-1(4.55e-12)]_34 chrV:206755-207643 8.86e-01 100 chrV:242263-242600 5.25e-01 100 chrV:250092-250552 3.85e-12 18_[+2(5.60e-08)]_[-1(5.10e-11)]_24 chrV:269202-270784 6.49e-01 100 chrV:288183-288762 2.27e-08 68_[-2(1.43e-11)]_3 chrV:305016-306864 4.04e-01 100 chrV:311734-312326 1.34e-08 51_[+1(9.52e-13)]_20 chrV:354682-355401 8.60e-02 100 chrV:362094-362551 2.54e-01 100 chrV:396158-397973 8.89e-01 100 chrV:423078-424341 9.77e-01 100 chrV:430967-431581 2.55e-03 19_[+1(6.68e-05)]_52 chrV:434359-434804 2.73e-07 18_[+1(9.13e-08)]_[-2(2.73e-06)]_24 chrV:435594-436040 1.48e-07 23_[-2(1.01e-10)]_48 chrV:438346-439000 6.64e-01 100 chrV:441781-442670 3.22e-01 100 chrV:443058-443518 5.30e-05 3_[-2(1.25e-08)]_68 chrV:469232-469759 2.83e-12 16_[+2(9.61e-09)]_2_[-1(5.10e-11)]_\ 24 chrV:487015-487677 4.33e-08 43_[+1(4.55e-12)]_28 chrV:492186-492626 6.43e-11 4_[+1(7.02e-09)]_1_[-2(1.48e-09)]_\ 37 chrV:522683-523021 3.84e-03 2_[-3(7.54e-06)]_68 chrV:551024-551588 8.54e-14 37_[+1(6.80e-13)]_2_[-2(1.25e-08)]_\ 3 chrVI:4450-6272 9.62e-01 100 chrVI:64155-65411 1.32e-01 100 chrVI:95440-95905 1.86e-01 100 chrVI:101130-101663 3.61e-12 29_[-3(7.76e-14)]_41 chrVI:106567-106898 2.09e-01 100 chrVI:137238-137909 3.29e-04 2_[-2(4.98e-08)]_69 chrVI:157766-158243 5.41e-06 19_[-2(7.91e-10)]_52 chrVI:161994-162471 3.02e-15 45_[-3(2.77e-18)]_25 chrVI:167226-167697 3.76e-05 30_[+2(2.31e-06)]_41 chrVI:180662-181274 2.35e-09 64_[+1(1.32e-12)]_7 chrVI:191274-191833 3.25e-01 100 chrVI:204739-205241 2.55e-09 22_[-2(2.15e-11)]_49 chrVI:210454-210908 5.95e-04 42_[-2(2.31e-06)]_29 chrVI:221484-222175 6.58e-02 100 chrVI:223257-224221 1.70e-01 100 chrVI:226522-226983 2.01e-07 24_[-2(1.01e-10)]_47 chrVI:269300-270160 9.33e-01 100 chrVII:9-1853 6.77e-01 100 chrVII:10095-10576 8.45e-02 100 chrVII:73663-74150 4.13e-05 12_[-2(9.61e-09)]_59 chrVII:110396-110925 2.73e-07 23_[+1(9.13e-08)]_[-2(2.73e-06)]_19 chrVII:115273-115772 3.07e-08 20_[+2(1.53e-12)]_51 chrVII:122045-122654 2.93e-10 4_[-1(3.92e-12)]_67 chrVII:148087-149581 5.68e-01 100 chrVII:185334-185975 8.30e-01 100 chrVII:205253-205763 2.42e-04 67_[+2(8.90e-08)]_4 chrVII:228552-228817 9.86e-01 100 chrVII:254083-254694 7.37e-01 100 chrVII:276994-277428 5.97e-01 100 chrVII:287118-287743 1.43e-03 42_[-2(2.73e-06)]_29 chrVII:291575-291971 4.40e-01 100 chrVII:310455-312252 9.73e-01 100 chrVII:319571-320136 1.42e-04 11_[-1(9.13e-08)]_60 chrVII:328341-329157 9.70e-01 100 chrVII:364905-366742 9.78e-01 100 chrVII:371158-371521 3.87e-01 100 chrVII:401369-401805 5.07e-03 27_[-2(1.63e-06)]_44 chrVII:405258-405811 3.36e-08 19_[-1(9.32e-12)]_52 chrVII:412115-412599 2.77e-05 26_[-2(9.61e-09)]_45 chrVII:422811-423500 2.27e-01 100 chrVII:438533-439919 5.93e-01 100 chrVII:440332-442130 6.89e-01 100 chrVII:483383-483658 8.18e-03 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chrVII:828455-829008 2.31e-08 50_[+1(9.32e-12)]_21 chrVII:845377-845936 3.02e-15 42_[-3(2.77e-18)]_28 chrVII:856672-857046 1.95e-02 100 chrVII:857218-857718 1.89e-04 39_[-2(8.90e-08)]_32 chrVII:876114-876701 1.40e-15 41_[+2(1.01e-10)]_1_[-1(3.92e-12)] chrVII:878559-879053 1.43e-03 26_[-2(2.73e-06)]_45 chrVII:884192-884394 2.34e-01 100 chrVII:919863-920310 9.99e-01 100 chrVII:930717-931239 1.50e-24 33_[+1(1.32e-12)]_3_[+3(2.77e-18)]_\ 5 chrVII:1000270-1000649 2.75e-02 100 chrVII:1004000-1004449 7.45e-03 45_[+2(2.40e-05)]_26 chrVIII:20-270 1.04e-08 22_[+3(2.08e-12)]_48 chrVIII:34405-36395 2.40e-02 100 chrVIII:62546-62976 2.72e-03 48_[+2(2.73e-06)]_23 chrVIII:74905-75412 7.10e-01 100 chrVIII:85040-85602 5.01e-12 35_[+1(5.10e-11)]_2_[-2(9.61e-09)]_\ 5 chrVIII:103836-104833 1.37e-01 100 chrVIII:115888-116417 1.12e-13 13_[+1(1.17e-10)]_1_[-2(1.45e-10)]_\ 28 chrVIII:125877-127473 2.71e-01 100 chrVIII:132793-133382 9.71e-08 36_[-2(4.10e-10)]_35 chrVIII:134062-134672 3.85e-12 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chrXVI:581823-582393 1.40e-15 8_[+2(1.01e-10)]_1_[-1(3.92e-12)]_\ 33 chrXVI:622293-622854 1.34e-05 25_[+1(3.98e-09)]_46 chrXVI:627343-627678 1.51e-01 100 chrXVI:653831-655051 5.30e-01 100 chrXVI:689317-689849 7.00e-08 36_[+2(1.43e-11)]_35 chrXVI:699872-700673 3.10e-02 100 chrXVI:731622-732316 5.89e-02 100 chrXVI:744053-744584 3.71e-07 19_[+2(2.40e-05)]_1_[-1(1.20e-08)]_\ 22 chrXVI:768977-769510 1.90e-06 22_[+1(9.51e-10)]_49 chrXVI:775630-776065 9.33e-03 6_[-2(1.96e-05)]_65 chrXVI:794423-795459 1.86e-01 100 chrXVI:810452-810876 1.93e-04 66_[+2(4.98e-08)]_5 chrXVI:819151-819841 8.88e-01 100 chrXVI:856704-857129 5.64e-16 40_[+2(2.15e-11)]_1_[-1(1.41e-11)]_\ 1 chrXVI:860136-860690 6.49e-24 15_[-3(2.77e-18)]_3_[-1(1.32e-12)]_\ 23 chrXVI:879898-880590 9.96e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************