Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.016902
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.057477
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.072922
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.012966
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.064158
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background
Finished invoke:
  name: bg  status: 0  time: 0.014075
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 961.281169
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 65.776451
Invoking:
  centrimo -seqlen 525 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.158649
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.281125
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background -primary SGGRMTCGAACCSVKGAYCTY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.603389
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background -primary BDTGGYBYAGTGGKTWRRGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.644094
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background -primary CACCCATRCAYCACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.51114
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background -primary AACTKGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.311224
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background -primary AARAAAWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.504119
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.27799
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background -primary AAGGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.352305
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background -primary CCGTGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.252033
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background -primary ATCKTGAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.262859
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background -primary AGAGACM /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.280908
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background -primary GACTSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.260174
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background -primary CAAAWCCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.251224
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.280279
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background -primary CGCGGGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.356747
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background --motif SGGRMTCGAACCSVKGAYCTY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.32495
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background --motif BDTGGYBYAGTGGKTWRRGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.326397
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background --motif CACCCATRCAYCACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.316337
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background --motif AACTKGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.207127
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background --motif AARAAAWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.223872
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.206137
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background --motif AAGGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.187168
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background --motif CCGTGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.202954
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background --motif ATCKTGAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.207092
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background --motif AGAGACM /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.202325
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background --motif GACTSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.206273
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background --motif CAAAWCCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.206232
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.209632
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/background --motif CGCGGGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/BY4742--ARR1.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.205618
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--ARR1/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.160021
Done