******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--AFT1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:332311-332799 1.0000 100 chrVIII:301083-301725 1.0000 100 chrXIV:715662-716626 1.0000 100 chrVII:115274-115744 1.0000 100 chrXI:302703-303221 1.0000 100 chrI:166053-166593 1.0000 100 chrIV:1201523-1202294 1.0000 100 chrXVI:828910-829402 1.0000 100 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chrXI:309140-309297 1.0000 100 chrXV:779600-781010 1.0000 100 chrIII:68413-68705 1.0000 100 chrIV:1095196-1095672 1.0000 100 chrVII:856675-857750 1.0000 100 chrXII:423680-424591 1.0000 100 chrXI:108729-110138 1.0000 100 chrXIV:6467-7265 1.0000 100 chrX:745099-745199 1.0000 100 chrII:415451-415888 1.0000 100 chrIV:998225-998678 1.0000 100 chrIV:914045-914562 1.0000 100 chrXII:370515-371035 1.0000 100 chrVII:291531-291888 1.0000 100 chrVII:592533-592962 1.0000 100 chrIX:254182-254582 1.0000 100 chrXII:416646-417739 1.0000 100 chrVII:766106-766387 1.0000 100 chrX:622087-622187 1.0000 100 chrIV:221669-222314 1.0000 100 chrXII:214695-215155 1.0000 100 chrXIV:493919-495639 1.0000 100 chrIX:381947-383018 1.0000 100 chrIV:1150686-1151199 1.0000 100 chrIV:928262-928534 1.0000 100 chrXI:282824-284829 1.0000 100 chrXII:201642-202950 1.0000 100 chrVII:986862-987627 1.0000 100 chrX:233729-233829 1.0000 100 chrXV:854002-854429 1.0000 100 chrVIII:51158-51685 1.0000 100 chrX:204538-204638 1.0000 100 chrXV:980482-981028 1.0000 100 chrIV:955039-955524 1.0000 100 chrXI:163284-164368 1.0000 100 chrVIII:411006-411647 1.0000 100 chrXII:253173-255152 1.0000 100 chrXI:614195-614433 1.0000 100 chrXV:639085-639445 1.0000 100 chrXVI:481460-481836 1.0000 100 chrII:197274-197860 1.0000 100 chrV:340946-341561 1.0000 100 chrXIII:123274-124733 1.0000 100 chrXVI:899961-900509 1.0000 100 chrIV:1175599-1176054 1.0000 100 chrIX:96813-97618 1.0000 100 chrXVI:653918-655046 1.0000 100 chrVIII:132861-133355 1.0000 100 chrVIII:115909-116430 1.0000 100 chrXIV:306367-306690 1.0000 100 chrIV:321637-321975 1.0000 100 chrVII:345834-346660 1.0000 100 chrVII:422890-423370 1.0000 100 chrXI:326157-327584 1.0000 100 chrX:73345-73445 1.0000 100 chrXV:758935-759535 1.0000 100 chrIV:1488870-1490454 1.0000 100 chrVIII:134097-134536 1.0000 100 chrVII:555095-557464 1.0000 100 chrXIII:872447-873084 1.0000 100 chrIV:306673-307477 1.0000 100 chrXIII:504679-505162 1.0000 100 chrX:422746-422846 1.0000 100 chrIII:78326-78694 1.0000 100 chrXII:903184-903682 1.0000 100 chrXIII:549939-552265 1.0000 100 chrIV:1524143-1525678 1.0000 100 chrXV:215886-216039 1.0000 100 chrXIII:388020-390246 1.0000 100 chrV:207136-207593 1.0000 100 chrXIII:306190-306358 1.0000 100 chrV:122146-122636 1.0000 100 chrVII:1083512-1084383 1.0000 100 chrIV:1278595-1279068 1.0000 100 chrVI:101170-101569 1.0000 100 chrXI:313240-313652 1.0000 100 chrVII:738899-739476 1.0000 100 chrVIII:147444-148675 1.0000 100 chrXII:448506-448936 1.0000 100 chrX:651223-651323 1.0000 100 chrXIII:320974-321329 1.0000 100 chrXIII:407933-408736 1.0000 100 chrXV:594213-594660 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--AFT1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--AFT1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--AFT1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.288 C 0.212 G 0.212 T 0.288 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4742--AFT1/background): A 0.297 C 0.203 G 0.203 T 0.297 ******************************************************************************** ******************************************************************************** MOTIF MBSGGRATCGAACCSVKGAYCTYCHGRTTA MEME-1 width = 30 sites = 86 llr = 1720 E-value = 9.0e-368 ******************************************************************************** -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVKGAYCTYCHGRTTA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3:12:55:::aa::14:37:1:122:5116 pos.-specific C 544:::1:7:::a7532::6734543211: probability G 1357a52::a::::43571:1111273123 matrix T :4::::1a3::::21:3:2417423::871 bits 2.3 * * * 2.1 * * * 1.8 * * ** * 1.6 * * **** Relative 1.4 * ****** * * Entropy 1.2 * ******* * * * (28.9 bits) 0.9 *** ******* * ** * 0.7 **** ******** ***** * * * 0.5 ****** *************** ***** 0.2 ****************************** 0.0 ------------------------------ Multilevel CCGGGAATCGAACCCAGGACCTCCCGATTA consensus ATCA GG T TGGTA T CTATCG G sequence G C TA C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVKGAYCTYCHGRTTA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrVII:828468-828991 + 52 1.67e-12 AGCACTCACG ATGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrXIII:131626-132085 + 28 1.67e-12 AGCACTCACG ATGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrX:355166-355266 - 10 1.67e-12 AGCACTCACG ATGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGA chrVII:736195-736527 - 63 1.67e-12 CACTCACG ATGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrXI:162329-162738 + 12 1.67e-12 AACACTCACG ATGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrII:405679-406226 - 10 1.67e-12 AGCACTCACG ATGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGA chrX:374208-374308 + 67 1.67e-12 AGCACTCACG ATGGGGGTCGAACCCATAATCTTCTGATTA GAAG chrVII:405300-405784 - 12 1.67e-12 AGCACTCACG ATGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrVII:738899-739476 - 21 1.95e-12 AATGGTCTCT AGCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrII:197274-197860 - 13 1.95e-12 AATGGTCTCT AGCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrXIV:602110-602565 - 61 1.95e-12 AATGGTCTCT AGCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrXIV:569698-570148 + 2 1.95e-12 T AGCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrIV:667781-668252 + 49 1.95e-12 AATGGTCTCT AGCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrXV:854002-854429 + 30 3.11e-12 ATTGGACGCA ACCGGAATCGAACCGATGACCTCTTCCTTG CAAGGGAAGC chrXII:214695-215155 + 16 3.11e-12 AATGGACGCA ACCGGAATCGAACCGATGACCTCTTCCTTG CAAGGGAAGC chrI:166053-166593 - 29 3.11e-12 TTTGGACGCA ACCGGAATCGAACCGATGACCTCTTCCTTG CAAGGGAAGC chrIV:1352204-1352729 + 58 5.64e-12 ATAGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrV:435602-436006 + 6 5.64e-12 CCTGT AGGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrXIII:480401-480868 + 45 5.64e-12 GAAGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrV:135189-135669 + 54 5.64e-12 AAAGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrVII:930795-931223 + 2 8.68e-12 G CCCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrXV:281977-282456 - 31 8.68e-12 AATGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrX:396572-396672 + 9 8.68e-12 TGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrX:531596-531696 - 18 8.68e-12 ACTGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrVI:180710-181243 + 56 8.68e-12 ACTGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrVII:541613-542145 - 55 1.73e-11 CACTCCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrV:176930-177416 - 10 1.73e-11 TACTCCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGAT chrII:644978-645404 - 60 1.73e-11 AACTCCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrVII:401388-401762 + 10 1.73e-11 ACTCCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrXIII:290598-291132 - 20 1.73e-11 AACTCCGCTA CGGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrXV:980482-981028 - 45 3.33e-11 AAGGGGCGAG CTGGGAATTGAACCCAGGGCCTCTCGCATG CTTTGTTCCT chrXIV:546950-547421 - 24 3.33e-11 ACGGGGCGAG CTGGGAATTGAACCCAGGGCCTCTCGCATG CTTTGTCTTC chrXII:92375-92845 - 53 3.33e-11 AAGGGGCGAG CTGGGAATTGAACCCAGGGCCTCTCGCATG CTTTGTCTTC chrIX:325544-326072 - 25 4.28e-11 ATTGCTTCCA ATCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrXV:353891-354294 + 7 4.28e-11 CTTCCA ATCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrII:266208-266636 - 41 4.28e-11 AATGCTTCCA ATCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrXIV:374704-375102 - 69 5.49e-11 CT CTGTGGATCGAACACAGGACCTCCAGATGA CTTGACCGAA chrIII:123385-123828 + 29 1.00e-10 GTGGGGCGAG CCGGGACTCGAACCCGGGACCTCCCGCACC CTAAGCGAGA chrIV:802561-803004 + 7 1.12e-10 GTCCTA CCCGGATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrIII:168095-168605 + 9 1.12e-10 AGGTCCTA CCCGGATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrII:350617-351104 - 51 1.12e-10 TAAGGTCTTA CCCGGATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrXIII:420339-420835 + 59 1.42e-10 AATGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXIII:372192-372717 + 49 1.42e-10 AATGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrV:438496-438957 - 60 1.42e-10 ATTGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXI:379490-379924 - 59 1.42e-10 ATTGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXIII:586411-586899 + 39 1.42e-10 AATGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrVII:412140-412558 + 3 1.42e-10 CG CCCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrX:538370-538470 - 5 1.98e-10 AACGTTCCGT ACGGGACTCGAACCCGCAGTCTTCTCCTTA GGAG chrXIII:352091-352577 - 49 2.47e-10 AATGCGAATT CTGTGGATCGAACACAGGACCTCCAGATAA CTTGACCGAA chrXVI:560027-560479 + 3 2.47e-10 TT CTGTGGATCGAACACAGGACCTCCAGATAA CTTGACCGAA chrVIII:358296-358765 + 6 2.47e-10 GAATT CTGTGGATCGAACACAGGACCTCCAGATAA CTTGACCGAA chrII:326589-327086 + 13 5.19e-10 TTTGATCCAA CCGAGGTTCGAACTCGGGATCTTCGCCGTG TAAAGGCGAC chrXI:74421-74888 - 56 6.35e-10 AGCGACCCCA GTGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrVII:730938-731383 - 63 6.35e-10 CGACCCCA GTGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrXIV:102510-102960 - 67 6.35e-10 CCCA GTGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrXII:975814-976255 + 7 6.35e-10 ACCCCA GTGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrXIV:632436-632873 - 31 6.35e-10 AACGACCCCA GTGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrIII:127551-127913 - 70 6.35e-10 A GTGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrX:422746-422846 - 1 9.44e-10 TGTGCTCCAG GGGAGGTTCGAACTCTCGACCTTCAGATTA chrXV:976197-976686 - 65 9.44e-10 CTCCAG GGGAGGTTCGAACTCTCGACCTTCAGATTA TGAGACTGAC chrXIII:320974-321329 + 54 1.52e-09 AATGGACGAG TCCGGAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrXIII:768144-768650 + 30 1.52e-09 TTTGGACGAG TCCGGAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrXVI:856758-857131 - 43 1.52e-09 AATGGACGAG TCCGGAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrXVI:55894-56508 + 26 2.20e-09 ATTGAAACGG ACAGGAATTGAACCTGCAACCCTTCGATTG CAATCTTATT chrXVI:769019-769465 + 23 2.20e-09 AACTCCTCAT AGGGGGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrXIII:378998-379610 + 57 2.20e-09 ATTGAAACGG ACAGGAATTGAACCTGCAACCCTTCGATTG CAATCTTATT chrXV:438470-439002 - 15 2.20e-09 AACTCCTCAT AGGGGGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrX:415718-415818 + 3 2.20e-09 GG ACAGGAATTGAACCTGCAACCCTTCGATTG CAATCTTATT chrVII:287110-287638 + 34 2.20e-09 AATGAAACGG ACAGGAATTGAACCTGCAACCCTTCGATTG CAATCTTATT chrX:233729-233829 - 14 2.87e-09 TTCTTCCCCG CCAGGACTCGAACCTGGAATCTCCTGGTTC GTAGCCAGAC chrX:517649-517749 + 10 4.80e-09 TTAGCGCCG CTCGGTTTCGATCCGAGGACATCAGGGTTA TGAGCCCTGC chrXVI:338582-339124 + 53 4.80e-09 TTTAGCGCCG CTCGGTTTCGATCCGAGGACATCAGGGTTA TGAGCCCTGC chrXV:710003-710509 - 29 4.80e-09 ATTAGCGCCG CTCGGTTTCGATCCGAGGACATCAGGGTTA TGAGCCCTGC chrXVI:435681-436168 + 27 7.23e-09 AAAGCTCGCA CTCAGGATCGAACTAAGGACCAACAGATTT GCAATCTGCT chrXVI:744069-744563 - 52 7.23e-09 TTTGCCACCT GTCAGAATTGAACTAACGACCTTTGCATTA CAAGTGCAAC chrII:642848-643268 + 7 7.23e-09 CTCGCA CTCAGGATCGAACTAAGGACCAACAGATTT GCAATCTGCT chrVII:706921-707338 + 37 7.23e-09 AAAGCTCGCA CTCAGGATCGAACTAAGGACCAACAGATTT GCAATCTGCT chrX:204538-204638 - 1 3.40e-08 ATCTCCGCGA CGGGGAATTGAACCCCGATCTGGCACGCGA chrXIII:463307-463886 - 42 3.40e-08 ATCTCCGCGA CGGGGAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrXII:426912-427417 - 52 3.40e-08 TTCTCCGCGA CGGGGAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrXI:513107-513590 + 42 3.40e-08 ATCTCCGCGA CGGGGAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrIV:568713-569279 - 52 3.40e-08 TTCTCCGCGA CGGGGAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrXV:288017-288460 - 55 7.37e-08 TATCTCCCGG GGGCGAGTCGAACGCCCGATCTCAAGATTT CGTAGTGATA chrVII:483323-483699 - 16 1.57e-07 TGAAAACAAA CCCGGTCTCGAAGCGGAGATCCGGCGATAA TTACCGCAGA chrXI:313240-313652 + 13 2.41e-07 AATGCCATCT CCTAGAATCGAACCAGGGTTTCATCGGCCA CAACGATGTG chrXIII:362855-363394 - 24 2.41e-07 AATGCCATCT CCTAGAATCGAACCAGGGTTTCATCGGCCA CAACGATGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVKGAYCTYCHGRTTA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:828468-828991 1.7e-12 51_[+1]_19 chrXIII:131626-132085 1.7e-12 27_[+1]_43 chrX:355166-355266 1.7e-12 9_[-1]_61 chrVII:736195-736527 1.7e-12 62_[-1]_8 chrXI:162329-162738 1.7e-12 11_[+1]_59 chrII:405679-406226 1.7e-12 9_[-1]_61 chrX:374208-374308 1.7e-12 66_[+1]_4 chrVII:405300-405784 1.7e-12 11_[-1]_59 chrVII:738899-739476 2e-12 20_[-1]_50 chrII:197274-197860 2e-12 12_[-1]_58 chrXIV:602110-602565 2e-12 60_[-1]_10 chrXIV:569698-570148 2e-12 1_[+1]_69 chrIV:667781-668252 2e-12 48_[+1]_22 chrXV:854002-854429 3.1e-12 29_[+1]_41 chrXII:214695-215155 3.1e-12 15_[+1]_55 chrI:166053-166593 3.1e-12 28_[-1]_42 chrIV:1352204-1352729 5.6e-12 57_[+1]_13 chrV:435602-436006 5.6e-12 5_[+1]_65 chrXIII:480401-480868 5.6e-12 44_[+1]_26 chrV:135189-135669 5.6e-12 53_[+1]_17 chrVII:930795-931223 8.7e-12 1_[+1]_69 chrXV:281977-282456 8.7e-12 30_[-1]_40 chrX:396572-396672 8.7e-12 8_[+1]_62 chrX:531596-531696 8.7e-12 17_[-1]_53 chrVI:180710-181243 8.7e-12 55_[+1]_15 chrVII:541613-542145 1.7e-11 54_[-1]_16 chrV:176930-177416 1.7e-11 9_[-1]_61 chrII:644978-645404 1.7e-11 59_[-1]_11 chrVII:401388-401762 1.7e-11 9_[+1]_61 chrXIII:290598-291132 1.7e-11 19_[-1]_51 chrXV:980482-981028 3.3e-11 44_[-1]_26 chrXIV:546950-547421 3.3e-11 23_[-1]_47 chrXII:92375-92845 3.3e-11 52_[-1]_18 chrIX:325544-326072 4.3e-11 24_[-1]_46 chrXV:353891-354294 4.3e-11 6_[+1]_64 chrII:266208-266636 4.3e-11 40_[-1]_30 chrXIV:374704-375102 5.5e-11 68_[-1]_2 chrIII:123385-123828 1e-10 28_[+1]_42 chrIV:802561-803004 1.1e-10 6_[+1]_64 chrIII:168095-168605 1.1e-10 8_[+1]_62 chrII:350617-351104 1.1e-10 50_[-1]_20 chrXIII:420339-420835 1.4e-10 58_[+1]_12 chrXIII:372192-372717 1.4e-10 48_[+1]_22 chrV:438496-438957 1.4e-10 59_[-1]_11 chrXI:379490-379924 1.4e-10 58_[-1]_12 chrXIII:586411-586899 1.4e-10 38_[+1]_32 chrVII:412140-412558 1.4e-10 2_[+1]_68 chrX:538370-538470 2e-10 4_[-1]_66 chrXIII:352091-352577 2.5e-10 48_[-1]_22 chrXVI:560027-560479 2.5e-10 2_[+1]_68 chrVIII:358296-358765 2.5e-10 5_[+1]_65 chrII:326589-327086 5.2e-10 12_[+1]_58 chrXI:74421-74888 6.4e-10 55_[-1]_15 chrVII:730938-731383 6.4e-10 62_[-1]_8 chrXIV:102510-102960 6.4e-10 66_[-1]_4 chrXII:975814-976255 6.4e-10 6_[+1]_64 chrXIV:632436-632873 6.4e-10 30_[-1]_40 chrIII:127551-127913 6.4e-10 69_[-1]_1 chrX:422746-422846 9.4e-10 [-1]_70 chrXV:976197-976686 9.4e-10 64_[-1]_6 chrXIII:320974-321329 1.5e-09 53_[+1]_17 chrXIII:768144-768650 1.5e-09 29_[+1]_41 chrXVI:856758-857131 1.5e-09 42_[-1]_28 chrXVI:55894-56508 2.2e-09 25_[+1]_45 chrXVI:769019-769465 2.2e-09 22_[+1]_48 chrXIII:378998-379610 2.2e-09 56_[+1]_14 chrXV:438470-439002 2.2e-09 14_[-1]_56 chrX:415718-415818 2.2e-09 2_[+1]_68 chrVII:287110-287638 2.2e-09 33_[+1]_37 chrX:233729-233829 2.9e-09 13_[-1]_57 chrX:517649-517749 4.8e-09 9_[+1]_61 chrXVI:338582-339124 4.8e-09 52_[+1]_18 chrXV:710003-710509 4.8e-09 28_[-1]_42 chrXVI:435681-436168 7.2e-09 26_[+1]_44 chrXVI:744069-744563 7.2e-09 51_[-1]_19 chrII:642848-643268 7.2e-09 6_[+1]_64 chrVII:706921-707338 7.2e-09 36_[+1]_34 chrX:204538-204638 3.4e-08 [-1]_70 chrXIII:463307-463886 3.4e-08 41_[-1]_29 chrXII:426912-427417 3.4e-08 51_[-1]_19 chrXI:513107-513590 3.4e-08 41_[+1]_29 chrIV:568713-569279 3.4e-08 51_[-1]_19 chrXV:288017-288460 7.4e-08 54_[-1]_16 chrVII:483323-483699 1.6e-07 15_[-1]_55 chrXI:313240-313652 2.4e-07 12_[+1]_58 chrXIII:362855-363394 2.4e-07 23_[-1]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVKGAYCTYCHGRTTA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MBSGGRATCGAACCSVKGAYCTYCHGRTTA width=30 seqs=86 chrVII:828468-828991 ( 52) ATGGGGGTCGAACCCATAATCTTCTGATTA 1 chrXIII:131626-132085 ( 28) ATGGGGGTCGAACCCATAATCTTCTGATTA 1 chrX:355166-355266 ( 10) ATGGGGGTCGAACCCATAATCTTCTGATTA 1 chrVII:736195-736527 ( 63) ATGGGGGTCGAACCCATAATCTTCTGATTA 1 chrXI:162329-162738 ( 12) ATGGGGGTCGAACCCATAATCTTCTGATTA 1 chrII:405679-406226 ( 10) ATGGGGGTCGAACCCATAATCTTCTGATTA 1 chrX:374208-374308 ( 67) ATGGGGGTCGAACCCATAATCTTCTGATTA 1 chrVII:405300-405784 ( 12) ATGGGGGTCGAACCCATAATCTTCTGATTA 1 chrVII:738899-739476 ( 21) AGCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrII:197274-197860 ( 13) AGCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrXIV:602110-602565 ( 61) AGCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrXIV:569698-570148 ( 2) AGCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrIV:667781-668252 ( 49) AGCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrXV:854002-854429 ( 30) ACCGGAATCGAACCGATGACCTCTTCCTTG 1 chrXII:214695-215155 ( 16) ACCGGAATCGAACCGATGACCTCTTCCTTG 1 chrI:166053-166593 ( 29) ACCGGAATCGAACCGATGACCTCTTCCTTG 1 chrIV:1352204-1352729 ( 58) AGGGGGCTCGAACCCCTAACCTTATGATTA 1 chrV:435602-436006 ( 6) AGGGGGCTCGAACCCCTAACCTTATGATTA 1 chrXIII:480401-480868 ( 45) AGGGGGCTCGAACCCCTAACCTTATGATTA 1 chrV:135189-135669 ( 54) AGGGGGCTCGAACCCCTAACCTTATGATTA 1 chrVII:930795-931223 ( 2) CCCGGAATCGAACCGGGGGCCCAACGATGG 1 chrXV:281977-282456 ( 31) CCCGGAATCGAACCGGGGGCCCAACGATGG 1 chrX:396572-396672 ( 9) CCCGGAATCGAACCGGGGGCCCAACGATGG 1 chrX:531596-531696 ( 18) CCCGGAATCGAACCGGGGGCCCAACGATGG 1 chrVI:180710-181243 ( 56) CCCGGAATCGAACCGGGGGCCCAACGATGG 1 chrVII:541613-542145 ( 55) CGGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrV:176930-177416 ( 10) CGGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrII:644978-645404 ( 60) CGGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrVII:401388-401762 ( 10) CGGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrXIII:290598-291132 ( 20) CGGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrXV:980482-981028 ( 45) CTGGGAATTGAACCCAGGGCCTCTCGCATG 1 chrXIV:546950-547421 ( 24) CTGGGAATTGAACCCAGGGCCTCTCGCATG 1 chrXII:92375-92845 ( 53) CTGGGAATTGAACCCAGGGCCTCTCGCATG 1 chrIX:325544-326072 ( 25) ATCGGATTTGAACCGATGATCTCCACATTA 1 chrXV:353891-354294 ( 7) ATCGGATTTGAACCGATGATCTCCACATTA 1 chrII:266208-266636 ( 41) ATCGGATTTGAACCGATGATCTCCACATTA 1 chrXIV:374704-375102 ( 69) CTGTGGATCGAACACAGGACCTCCAGATGA 1 chrIII:123385-123828 ( 29) CCGGGACTCGAACCCGGGACCTCCCGCACC 1 chrIV:802561-803004 ( 7) CCCGGATTCGAACCGGGGTTGTCCGGATCA 1 chrIII:168095-168605 ( 9) CCCGGATTCGAACCGGGGTTGTCCGGATCA 1 chrII:350617-351104 ( 51) CCCGGATTCGAACCGGGGTTGTCCGGATCA 1 chrXIII:420339-420835 ( 59) CCCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXIII:372192-372717 ( 49) CCCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrV:438496-438957 ( 60) CCCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXI:379490-379924 ( 59) CCCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXIII:586411-586899 ( 39) CCCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrVII:412140-412558 ( 3) CCCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrX:538370-538470 ( 5) ACGGGACTCGAACCCGCAGTCTTCTCCTTA 1 chrXIII:352091-352577 ( 49) CTGTGGATCGAACACAGGACCTCCAGATAA 1 chrXVI:560027-560479 ( 3) CTGTGGATCGAACACAGGACCTCCAGATAA 1 chrVIII:358296-358765 ( 6) CTGTGGATCGAACACAGGACCTCCAGATAA 1 chrII:326589-327086 ( 13) CCGAGGTTCGAACTCGGGATCTTCGCCGTG 1 chrXI:74421-74888 ( 56) GTGAGGGTTGAACTCACGATCTTGCGATTA 1 chrVII:730938-731383 ( 63) GTGAGGGTTGAACTCACGATCTTGCGATTA 1 chrXIV:102510-102960 ( 67) GTGAGGGTTGAACTCACGATCTTGCGATTA 1 chrXII:975814-976255 ( 7) GTGAGGGTTGAACTCACGATCTTGCGATTA 1 chrXIV:632436-632873 ( 31) GTGAGGGTTGAACTCACGATCTTGCGATTA 1 chrIII:127551-127913 ( 70) GTGAGGGTTGAACTCACGATCTTGCGATTA 1 chrX:422746-422846 ( 1) GGGAGGTTCGAACTCTCGACCTTCAGATTA 1 chrXV:976197-976686 ( 65) GGGAGGTTCGAACTCTCGACCTTCAGATTA 1 chrXIII:320974-321329 ( 54) TCCGGAATCGAACCGGAGACCTCTCCCATG 1 chrXIII:768144-768650 ( 30) TCCGGAATCGAACCGGAGACCTCTCCCATG 1 chrXVI:856758-857131 ( 43) TCCGGAATCGAACCGGAGACCTCTCCCATG 1 chrXVI:55894-56508 ( 26) ACAGGAATTGAACCTGCAACCCTTCGATTG 1 chrXVI:769019-769465 ( 23) AGGGGGCTCGAACCCCTGACATTTCGGTAT 1 chrXIII:378998-379610 ( 57) ACAGGAATTGAACCTGCAACCCTTCGATTG 1 chrXV:438470-439002 ( 15) AGGGGGCTCGAACCCCTGACATTTCGGTAT 1 chrX:415718-415818 ( 3) ACAGGAATTGAACCTGCAACCCTTCGATTG 1 chrVII:287110-287638 ( 34) ACAGGAATTGAACCTGCAACCCTTCGATTG 1 chrX:233729-233829 ( 14) CCAGGACTCGAACCTGGAATCTCCTGGTTC 1 chrX:517649-517749 ( 10) CTCGGTTTCGATCCGAGGACATCAGGGTTA 1 chrXVI:338582-339124 ( 53) CTCGGTTTCGATCCGAGGACATCAGGGTTA 1 chrXV:710003-710509 ( 29) CTCGGTTTCGATCCGAGGACATCAGGGTTA 1 chrXVI:435681-436168 ( 27) CTCAGGATCGAACTAAGGACCAACAGATTT 1 chrXVI:744069-744563 ( 52) GTCAGAATTGAACTAACGACCTTTGCATTA 1 chrII:642848-643268 ( 7) CTCAGGATCGAACTAAGGACCAACAGATTT 1 chrVII:706921-707338 ( 37) CTCAGGATCGAACTAAGGACCAACAGATTT 1 chrX:204538-204638 ( 1) CGGGGAATTGAACCCCGATCTGGCACGCGA 1 chrXIII:463307-463886 ( 42) CGGGGAATTGAACCCCGATCTGGCACGCGA 1 chrXII:426912-427417 ( 52) CGGGGAATTGAACCCCGATCTGGCACGCGA 1 chrXI:513107-513590 ( 42) CGGGGAATTGAACCCCGATCTGGCACGCGA 1 chrIV:568713-569279 ( 52) CGGGGAATTGAACCCCGATCTGGCACGCGA 1 chrXV:288017-288460 ( 55) GGGCGAGTCGAACGCCCGATCTCAAGATTT 1 chrVII:483323-483699 ( 16) CCCGGTCTCGAAGCGGAGATCCGGCGATAA 1 chrXI:313240-313652 ( 13) CCTAGAATCGAACCAGGGTTTCATCGGCCA 1 chrXIII:362855-363394 ( 24) CCTAGAATCGAACCAGGGTTTCATCGGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVKGAYCTYCHGRTTA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 9.95758 E= 9.0e-368 23 130 -80 -309 -1307 83 46 28 -235 105 130 -367 -28 -412 178 -268 -1307 -1307 230 -1307 68 -1307 123 -268 78 -80 20 -109 -1307 -1307 -1307 175 -1307 188 -1307 -22 -1307 -1307 230 -1307 175 -1307 -1307 -1307 170 -1307 -1307 -309 -1307 229 -412 -1307 -268 183 -412 -43 -209 130 88 -235 41 34 68 -367 -268 -22 127 -3 -15 -1307 185 -1307 128 -1307 -95 -77 -1307 163 -1307 32 -235 178 -95 -109 -309 34 -180 113 -135 101 -154 45 -51 130 -132 -51 -51 88 -42 -15 -1307 34 188 -1307 82 5 40 -1307 -187 -132 -132 135 -209 -154 -12 118 105 -312 52 -209 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVKGAYCTYCHGRTTA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 86 E= 9.0e-368 0.348837 0.500000 0.116279 0.034884 0.000000 0.360465 0.279070 0.360465 0.058140 0.418605 0.500000 0.023256 0.244186 0.011628 0.697674 0.046512 0.000000 0.000000 1.000000 0.000000 0.476744 0.000000 0.476744 0.046512 0.511628 0.116279 0.232558 0.139535 0.000000 0.000000 0.000000 1.000000 0.000000 0.744186 0.000000 0.255814 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.965116 0.000000 0.000000 0.034884 0.000000 0.988372 0.011628 0.000000 0.046512 0.720930 0.011628 0.220930 0.069767 0.500000 0.372093 0.058140 0.395349 0.255814 0.325581 0.023256 0.046512 0.174419 0.488372 0.290698 0.267442 0.000000 0.732558 0.000000 0.720930 0.000000 0.104651 0.174419 0.000000 0.627907 0.000000 0.372093 0.058140 0.697674 0.104651 0.139535 0.034884 0.255814 0.058140 0.651163 0.116279 0.406977 0.069767 0.406977 0.209302 0.500000 0.081395 0.209302 0.209302 0.372093 0.151163 0.267442 0.000000 0.255814 0.744186 0.000000 0.523256 0.209302 0.267442 0.000000 0.081395 0.081395 0.081395 0.755814 0.069767 0.069767 0.186047 0.674419 0.616279 0.023256 0.290698 0.069767 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVKGAYCTYCHGRTTA MEME-1 regular expression -------------------------------------------------------------------------------- [CA][CTG][GC][GA]G[AG][AG]T[CT]GAAC[CT][CG][AGC][GT][GA]A[CT]C[TC][CT][CAT][CTA][GC][AGC]TT[AG] -------------------------------------------------------------------------------- Time 351.03 secs. ******************************************************************************** ******************************************************************************** MOTIF RBSSCTTWAMCMACTNRGCCA MEME-2 width = 21 sites = 77 llr = 1222 E-value = 5.5e-204 ******************************************************************************** -------------------------------------------------------------------------------- Motif RBSSCTTWAMCMACTNRGCCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 41::12:564:59::232::a pos.-specific C 1254823:16a4:a:21:98: probability G 3456:1::2::11::4681:: matrix T 23::16751:::::a2:::2: bits 2.3 * * 2.1 * * 1.8 * ** * * 1.6 * ** ** * Relative 1.4 * * ** **** Entropy 1.2 *** ** *** **** (22.9 bits) 0.9 *** * ** *** **** 0.7 *** ** ** *** ***** 0.5 *** ** ****** ***** 0.2 ********************* 0.0 --------------------- Multilevel AGGGCTTTACCAACTGGGCCA consensus GTCC CA A C TA T sequence C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RBSSCTTWAMCMACTNRGCCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXVI:819152-819869 - 76 1.36e-11 CACG GTGCCTTAACCAACTGGGCCA AGAGACCATT chrIX:183300-183704 + 34 1.36e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCAGG chrXIV:602110-602565 - 32 1.36e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCATT chrXIV:569698-570148 + 40 1.36e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCACT chrXII:1051904-1052385 + 23 1.36e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCATG chrVIII:115909-116430 + 33 8.43e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTCT chrXV:353891-354294 + 44 8.43e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCAGT chrXIV:560574-561001 + 1 8.43e-11 . GGCGCCTTACCAACTTGGCCA TAGAAGCCCG chrII:266208-266636 - 13 8.43e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCAGT chrX:58999-59099 + 10 8.43e-11 TACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTTC chrVI:137251-137909 + 2 1.30e-10 C ACGCCTTAACCAACTTGGCCA TGGAGTCAGT chrXVI:810460-810858 - 74 1.30e-10 AGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCGCA chrXI:74421-74888 - 27 1.30e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTAA chrVII:730938-731383 - 34 1.30e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTTT chrXV:228109-228563 - 52 1.30e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTAA chrXIV:102510-102960 - 38 1.30e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTTA chrXII:975814-976255 + 45 1.30e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTTT chrXIV:632436-632873 - 2 1.30e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA T chrIII:127551-127913 - 41 1.30e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCATT chrV:288232-288712 + 75 7.30e-10 TTTCAAGTCT GTCGCCTTAACCACTCGGCCA TAGTG chrIV:1150686-1151199 + 22 8.65e-10 AATAGCAGGC ATCGCCTTAACCACTCGGCCA CTGGGACTGA chrVI:191332-191799 + 71 8.65e-10 ATAGCAGGGC ATCGCCTTAACCACTCGGCCA CTGGGACAG chrXV:854002-854429 + 67 2.96e-09 TTGCAAGGGA AGCGCGCTACCAACTGCGCCA TGTGCCCTGA chrXII:214695-215155 + 53 2.96e-09 TTGCAAGGGA AGCGCGCTACCAACTGCGCCA TGTGCCCTAA chrI:166053-166593 - 1 2.96e-09 TTGCAAGGGA AGCGCGCTACCAACTGCGCCA chrVIII:132861-133355 + 22 3.40e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCACT chrI:182354-182761 + 69 3.40e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCAAA chrIV:1305394-1305907 - 37 3.40e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCTTA chrXII:167787-168252 + 29 3.40e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCATA chrIV:437543-438008 - 54 3.40e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCTTA chrIV:1095196-1095672 + 50 7.50e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AGTCCGCTAA chrXIII:352091-352577 - 3 7.50e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AA chrXVI:560027-560479 + 59 7.50e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTCA chrVIII:358296-358765 + 62 7.50e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrVI:157736-158249 + 38 7.50e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTC chrII:36159-36628 - 62 7.50e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrXIV:374704-375102 - 23 7.50e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AGTCCGCTTA chrVIII:237749-238136 + 20 7.50e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrXIV:725997-726397 + 43 8.48e-09 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCAAA chrII:347426-347853 - 21 8.48e-09 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCGTA chrX:424267-424367 + 38 8.48e-09 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCATC chrXII:962821-963249 + 43 8.48e-09 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCGTC chrXI:83978-84402 - 75 8.48e-09 GTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCATA chrXIII:504679-505162 - 32 1.08e-08 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrVII:422890-423370 - 19 1.08e-08 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrXII:875162-875649 - 28 1.21e-08 TTAAAAGCCG AACGCTCTACCAACTGAGCTA ACAAGGATGA chrVII:115274-115744 - 36 1.21e-08 TTAAAAGCCG AACGCTCTACCAACTGAGCTA ACAAGGATGA chrXIII:768144-768650 + 67 2.63e-08 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCATT chrX:197198-197298 + 4 2.63e-08 GGG AGCGCGCTACCGACTACGCCA CACGCCCTAA chrXVI:856758-857131 - 15 2.63e-08 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCGAA chrVII:823280-823696 - 51 3.93e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCACT chrV:438496-438957 - 31 3.93e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCTAA chrXI:379490-379924 - 30 3.93e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCTAT chrXIII:586411-586899 + 77 3.93e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGA chrVII:412140-412558 + 41 3.93e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCAGT chrX:378173-378273 - 53 3.93e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCTAT chrIV:1175599-1176054 - 60 3.56e-07 TTATGAGACT GACGCTCTTCCTACTGAGCTA CTGAAGCTTT chrXV:976197-976686 - 37 3.56e-07 TTATGAGACT GACGCTCTTCCTACTGAGCTA CTGAAGCGCA chrXIII:572691-573256 + 5 3.56e-07 GACT GACGCTCTTCCTACTGAGCTA CTGAAGCTGT chrXI:0-1087 - 63 4.63e-07 TAAATTGCAC AGGGTATAAACCGCTGAGGCA AGTGCCGTGA chrXV:288017-288460 - 11 5.26e-07 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGAAG chrVI:167253-167677 - 29 5.26e-07 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGTCG chrXI:665519-666810 + 21 8.00e-07 TAAATGGCAC AGGGTATAGACCGCTGAGGCA AGTGCCGTGC chrVII:7-1114 - 20 8.00e-07 TAAATGGCAC AGGGTATAGACCGCTGAGGCA AGTGCCGTGA chrIX:438664-439888 + 73 8.00e-07 TAAATGGCAC AGGGTATAGACCGCTGAGGCA AGTACCG chrI:229118-230200 + 35 8.00e-07 TAAATGGGAC AGGGTATAGACCGCTGAGGCA AGTGCCGTGT chrXII:468762-468973 - 45 8.00e-07 CTACTCGGTC AGGCTCTTACCAGCTTAACTA CAGTTGATCG chrI:1-1137 - 31 8.00e-07 TAAATGGCAC AGGGTATAGACCGCTGAGGCA AGTGCCGTGC chrII:326589-327086 + 51 9.99e-07 TGTAAAGGCG ACGTCTTGAACCACTGGACCA TTGGACCCGG chrXV:226508-226867 + 17 1.06e-06 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCTGA chrVII:930795-931223 + 37 1.06e-06 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCTTA chrXV:281977-282456 - 5 1.06e-06 GATGGCAACG TTGGATTTTACCACTAAACCA CTTG chrX:396572-396672 + 44 1.06e-06 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCTTA chrXIII:183783-184167 + 16 1.06e-06 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCGAT chrI:142129-143692 + 10 1.59e-06 GCTAAGAAG GCTGCTAAGCCAGCTAAGCCA GCTGCTAAGT chrX:745099-745199 - 74 1.84e-06 TCCAAT TACCCATATCCAACTCCACTA CCATTACCCT chrV:435602-436006 + 43 1.84e-06 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RBSSCTTWAMCMACTNRGCCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:819152-819869 1.4e-11 75_[-2]_4 chrIX:183300-183704 1.4e-11 33_[+2]_46 chrXIV:602110-602565 1.4e-11 31_[-2]_48 chrXIV:569698-570148 1.4e-11 39_[+2]_40 chrXII:1051904-1052385 1.4e-11 22_[+2]_57 chrVIII:115909-116430 8.4e-11 32_[+2]_47 chrXV:353891-354294 8.4e-11 43_[+2]_36 chrXIV:560574-561001 8.4e-11 [+2]_79 chrII:266208-266636 8.4e-11 12_[-2]_67 chrX:58999-59099 8.4e-11 9_[+2]_70 chrVI:137251-137909 1.3e-10 1_[+2]_78 chrXVI:810460-810858 1.3e-10 73_[-2]_6 chrXI:74421-74888 1.3e-10 26_[-2]_53 chrVII:730938-731383 1.3e-10 33_[-2]_46 chrXV:228109-228563 1.3e-10 51_[-2]_28 chrXIV:102510-102960 1.3e-10 37_[-2]_42 chrXII:975814-976255 1.3e-10 44_[+2]_35 chrXIV:632436-632873 1.3e-10 1_[-2]_78 chrIII:127551-127913 1.3e-10 40_[-2]_39 chrV:288232-288712 7.3e-10 74_[+2]_5 chrIV:1150686-1151199 8.7e-10 21_[+2]_58 chrVI:191332-191799 8.7e-10 70_[+2]_9 chrXV:854002-854429 3e-09 66_[+2]_13 chrXII:214695-215155 3e-09 52_[+2]_27 chrI:166053-166593 3e-09 [-2]_79 chrVIII:132861-133355 3.4e-09 21_[+2]_58 chrI:182354-182761 3.4e-09 68_[+2]_11 chrIV:1305394-1305907 3.4e-09 36_[-2]_43 chrXII:167787-168252 3.4e-09 28_[+2]_51 chrIV:437543-438008 3.4e-09 53_[-2]_26 chrIV:1095196-1095672 7.5e-09 49_[+2]_30 chrXIII:352091-352577 7.5e-09 2_[-2]_77 chrXVI:560027-560479 7.5e-09 58_[+2]_21 chrVIII:358296-358765 7.5e-09 61_[+2]_18 chrVI:157736-158249 7.5e-09 37_[+2]_42 chrII:36159-36628 7.5e-09 61_[-2]_18 chrXIV:374704-375102 7.5e-09 22_[-2]_57 chrVIII:237749-238136 7.5e-09 19_[+2]_60 chrXIV:725997-726397 8.5e-09 42_[+2]_37 chrII:347426-347853 8.5e-09 20_[-2]_59 chrX:424267-424367 8.5e-09 37_[+2]_42 chrXII:962821-963249 8.5e-09 42_[+2]_37 chrXI:83978-84402 8.5e-09 74_[-2]_5 chrXIII:504679-505162 1.1e-08 31_[-2]_48 chrVII:422890-423370 1.1e-08 18_[-2]_61 chrXII:875162-875649 1.2e-08 27_[-2]_52 chrVII:115274-115744 1.2e-08 35_[-2]_44 chrXIII:768144-768650 2.6e-08 66_[+2]_13 chrX:197198-197298 2.6e-08 3_[+2]_76 chrXVI:856758-857131 2.6e-08 14_[-2]_65 chrVII:823280-823696 3.9e-08 50_[-2]_29 chrV:438496-438957 3.9e-08 30_[-2]_49 chrXI:379490-379924 3.9e-08 29_[-2]_50 chrXIII:586411-586899 3.9e-08 76_[+2]_3 chrVII:412140-412558 3.9e-08 40_[+2]_39 chrX:378173-378273 3.9e-08 52_[-2]_27 chrIV:1175599-1176054 3.6e-07 59_[-2]_20 chrXV:976197-976686 3.6e-07 36_[-2]_43 chrXIII:572691-573256 3.6e-07 4_[+2]_75 chrXI:0-1087 4.6e-07 62_[-2]_17 chrXV:288017-288460 5.3e-07 10_[-2]_69 chrVI:167253-167677 5.3e-07 28_[-2]_51 chrXI:665519-666810 8e-07 20_[+2]_59 chrVII:7-1114 8e-07 19_[-2]_60 chrIX:438664-439888 8e-07 72_[+2]_7 chrI:229118-230200 8e-07 34_[+2]_45 chrXII:468762-468973 8e-07 44_[-2]_35 chrI:1-1137 8e-07 30_[-2]_49 chrII:326589-327086 1e-06 50_[+2]_29 chrXV:226508-226867 1.1e-06 16_[+2]_63 chrVII:930795-931223 1.1e-06 36_[+2]_43 chrXV:281977-282456 1.1e-06 4_[-2]_75 chrX:396572-396672 1.1e-06 43_[+2]_36 chrXIII:183783-184167 1.1e-06 15_[+2]_64 chrI:142129-143692 1.6e-06 9_[+2]_70 chrX:745099-745199 1.8e-06 73_[-2]_6 chrV:435602-436006 1.8e-06 42_[+2]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RBSSCTTWAMCMACTNRGCCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RBSSCTTWAMCMACTNRGCCA width=21 seqs=77 chrXVI:819152-819869 ( 76) GTGCCTTAACCAACTGGGCCA 1 chrIX:183300-183704 ( 34) GTGCCTTAACCAACTGGGCCA 1 chrXIV:602110-602565 ( 32) GTGCCTTAACCAACTGGGCCA 1 chrXIV:569698-570148 ( 40) GTGCCTTAACCAACTGGGCCA 1 chrXII:1051904-1052385 ( 23) GTGCCTTAACCAACTGGGCCA 1 chrVIII:115909-116430 ( 33) GGCGCCTTACCAACTTGGCCA 1 chrXV:353891-354294 ( 44) GGCGCCTTACCAACTTGGCCA 1 chrXIV:560574-561001 ( 1) GGCGCCTTACCAACTTGGCCA 1 chrII:266208-266636 ( 13) GGCGCCTTACCAACTTGGCCA 1 chrX:58999-59099 ( 10) GGCGCCTTACCAACTTGGCCA 1 chrVI:137251-137909 ( 2) ACGCCTTAACCAACTTGGCCA 1 chrXVI:810460-810858 ( 74) ACGCCTTAACCAACTTGGCCA 1 chrXI:74421-74888 ( 27) ACGCCTTAACCAACTTGGCCA 1 chrVII:730938-731383 ( 34) ACGCCTTAACCAACTTGGCCA 1 chrXV:228109-228563 ( 52) ACGCCTTAACCAACTTGGCCA 1 chrXIV:102510-102960 ( 38) ACGCCTTAACCAACTTGGCCA 1 chrXII:975814-976255 ( 45) ACGCCTTAACCAACTTGGCCA 1 chrXIV:632436-632873 ( 2) ACGCCTTAACCAACTTGGCCA 1 chrIII:127551-127913 ( 41) ACGCCTTAACCAACTTGGCCA 1 chrV:288232-288712 ( 75) GTCGCCTTAACCACTCGGCCA 1 chrIV:1150686-1151199 ( 22) ATCGCCTTAACCACTCGGCCA 1 chrVI:191332-191799 ( 71) ATCGCCTTAACCACTCGGCCA 1 chrXV:854002-854429 ( 67) AGCGCGCTACCAACTGCGCCA 1 chrXII:214695-215155 ( 53) AGCGCGCTACCAACTGCGCCA 1 chrI:166053-166593 ( 1) AGCGCGCTACCAACTGCGCCA 1 chrVIII:132861-133355 ( 22) TTCGCCTTAACCACTCGGCCA 1 chrI:182354-182761 ( 69) TTCGCCTTAACCACTCGGCCA 1 chrIV:1305394-1305907 ( 37) TTCGCCTTAACCACTCGGCCA 1 chrXII:167787-168252 ( 29) TTCGCCTTAACCACTCGGCCA 1 chrIV:437543-438008 ( 54) TTCGCCTTAACCACTCGGCCA 1 chrIV:1095196-1095672 ( 50) GGCGCTCTCCCAACTGAGCTA 1 chrXIII:352091-352577 ( 3) GGCGCTCTCCCAACTGAGCTA 1 chrXVI:560027-560479 ( 59) GGCGCTCTCCCAACTGAGCTA 1 chrVIII:358296-358765 ( 62) GGCGCTCTCCCAACTGAGCTA 1 chrVI:157736-158249 ( 38) GGCGCTCTCCCAACTGAGCTA 1 chrII:36159-36628 ( 62) GGCGCTCTCCCAACTGAGCTA 1 chrXIV:374704-375102 ( 23) GGCGCTCTCCCAACTGAGCTA 1 chrVIII:237749-238136 ( 20) GGCGCTCTCCCAACTGAGCTA 1 chrXIV:725997-726397 ( 43) CCGCCTTAGACCACTCGGCCA 1 chrII:347426-347853 ( 21) CCGCCTTAGACCACTCGGCCA 1 chrX:424267-424367 ( 38) CCGCCTTAGACCACTCGGCCA 1 chrXII:962821-963249 ( 43) CCGCCTTAGACCACTCGGCCA 1 chrXI:83978-84402 ( 75) CCGCCTTAGACCACTCGGCCA 1 chrXIII:504679-505162 ( 32) GCGCCTTAGACCGCTCGGCCA 1 chrVII:422890-423370 ( 19) GCGCCTTAGACCGCTCGGCCA 1 chrXII:875162-875649 ( 28) AACGCTCTACCAACTGAGCTA 1 chrVII:115274-115744 ( 36) AACGCTCTACCAACTGAGCTA 1 chrXIII:768144-768650 ( 67) AGCGCGCTACCGACTACGCCA 1 chrX:197198-197298 ( 4) AGCGCGCTACCGACTACGCCA 1 chrXVI:856758-857131 ( 15) AGCGCGCTACCGACTACGCCA 1 chrVII:823280-823696 ( 51) ATGCCATAACCGACTAGACCA 1 chrV:438496-438957 ( 31) ATGCCATAACCGACTAGACCA 1 chrXI:379490-379924 ( 30) ATGCCATAACCGACTAGACCA 1 chrXIII:586411-586899 ( 77) ATGCCATAACCGACTAGACCA 1 chrVII:412140-412558 ( 41) ATGCCATAACCGACTAGACCA 1 chrX:378173-378273 ( 53) ATGCCATAACCGACTAGACCA 1 chrIV:1175599-1176054 ( 60) GACGCTCTTCCTACTGAGCTA 1 chrXV:976197-976686 ( 37) GACGCTCTTCCTACTGAGCTA 1 chrXIII:572691-573256 ( 5) GACGCTCTTCCTACTGAGCTA 1 chrXI:0-1087 ( 63) AGGGTATAAACCGCTGAGGCA 1 chrXV:288017-288460 ( 11) CGCCTTAAACCAACTTGGCTA 1 chrVI:167253-167677 ( 29) CGCCTTAAACCAACTTGGCTA 1 chrXI:665519-666810 ( 21) AGGGTATAGACCGCTGAGGCA 1 chrVII:7-1114 ( 20) AGGGTATAGACCGCTGAGGCA 1 chrIX:438664-439888 ( 73) AGGGTATAGACCGCTGAGGCA 1 chrI:229118-230200 ( 35) AGGGTATAGACCGCTGAGGCA 1 chrXII:468762-468973 ( 45) AGGCTCTTACCAGCTTAACTA 1 chrI:1-1137 ( 31) AGGGTATAGACCGCTGAGGCA 1 chrII:326589-327086 ( 51) ACGTCTTGAACCACTGGACCA 1 chrXV:226508-226867 ( 17) TTGGATTTTACCACTAAACCA 1 chrVII:930795-931223 ( 37) TTGGATTTTACCACTAAACCA 1 chrXV:281977-282456 ( 5) TTGGATTTTACCACTAAACCA 1 chrX:396572-396672 ( 44) TTGGATTTTACCACTAAACCA 1 chrXIII:183783-184167 ( 16) TTGGATTTTACCACTAAACCA 1 chrI:142129-143692 ( 10) GCTGCTAAGCCAGCTAAGCCA 1 chrX:745099-745199 ( 74) TACCCATATCCAACTCCACTA 1 chrV:435602-436006 ( 43) TACGCGCTACCGATTGCGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RBSSCTTWAMCMACTNRGCCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.7323 E= 5.5e-204 53 -116 68 -93 -171 21 84 7 -1291 121 136 -451 -1291 99 153 -451 -219 201 -1291 -135 -82 -16 -116 91 -293 36 -1291 124 69 -1291 -396 77 104 -96 -26 -135 24 168 -1291 -1291 -1291 230 -1291 -1291 69 79 -64 -293 155 -1291 -64 -1291 -1291 228 -1291 -451 -1291 -1291 -1291 175 -61 4 89 -43 18 -96 146 -1291 -71 -1291 201 -1291 -1291 219 -138 -1291 -1291 194 -1291 -43 175 -1291 -1291 -1291 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RBSSCTTWAMCMACTNRGCCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 77 E= 5.5e-204 0.428571 0.090909 0.324675 0.155844 0.090909 0.233766 0.363636 0.311688 0.000000 0.467532 0.519481 0.012987 0.000000 0.402597 0.584416 0.012987 0.064935 0.818182 0.000000 0.116883 0.168831 0.181818 0.090909 0.558442 0.038961 0.259740 0.000000 0.701299 0.480519 0.000000 0.012987 0.506494 0.610390 0.103896 0.168831 0.116883 0.350649 0.649351 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.480519 0.350649 0.129870 0.038961 0.870130 0.000000 0.129870 0.000000 0.000000 0.987013 0.000000 0.012987 0.000000 0.000000 0.000000 1.000000 0.194805 0.207792 0.376623 0.220779 0.337662 0.103896 0.558442 0.000000 0.181818 0.000000 0.818182 0.000000 0.000000 0.922078 0.077922 0.000000 0.000000 0.779221 0.000000 0.220779 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RBSSCTTWAMCMACTNRGCCA MEME-2 regular expression -------------------------------------------------------------------------------- [AG][GTC][GC][GC]CT[TC][TA]A[CA]C[AC]ACT[GTC][GA]GC[CT]A -------------------------------------------------------------------------------- Time 670.18 secs. ******************************************************************************** ******************************************************************************** MOTIF CCBRAAGTGATAACCAYTACACTATABSAC MEME-3 width = 30 sites = 16 llr = 474 E-value = 4.0e-080 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCBRAAGTGATAACCAYTACACTATABSAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::6a7:::a:a7::7:38:9::a:a117: pos.-specific C a73::::3:::::8a:4:3a:a::::36:7 probability G :343::a:a:3:3::3::::::::3:4433 matrix T ::31:3:8::8::3::68::1:a:8:3::: bits 2.3 * * * * * * 2.1 * * * * * * 1.8 * * * ** * * * *** * 1.6 * * * ** * * * *** * Relative 1.4 ** * * ** * ** ***** * * Entropy 1.2 ** * ****** ** ******** * (42.7 bits) 0.9 ** ********************** *** 0.7 ************************** *** 0.5 ************************** *** 0.2 ****************************** 0.0 ------------------------------ Multilevel CCGAAAGTGATAACCATTACACTATAGCAC consensus GTG T C G GT GCAC G TGGG sequence C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCBRAAGTGATAACCAYTACACTATABSAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXII:448506-448936 + 20 8.87e-18 CGGATCAAAA CCGAAAGTGATAACCACTACACTATAGGAC CGGAACTTCT chrVIII:134097-134536 - 56 8.87e-18 CGGATCAAAA CCGAAAGTGATAACCACTACACTATAGGAC CGGAACTTAC chrIV:802561-803004 + 40 8.87e-18 CGGATCAAAA CCGAAAGTGATAACCACTACACTATAGGAC CGACAATTCA chrIV:520773-521172 - 51 8.87e-18 CGGATCAAAA CCGAAAGTGATAACCACTACACTATAGGAC CCTAAAATGG chrIII:168095-168605 + 42 8.87e-18 CGGATCAAAA CCGAAAGTGATAACCACTACACTATAGGAC CAGGACTTCT chrXIII:808114-808536 + 12 8.87e-18 CGGATCAGAA CCGAAAGTGATAACCACTACACTATAGGAC CTTTTTCTTC chrII:350617-351104 - 18 5.50e-14 CGGATCAAAA CCGAAAGTGATAACCACTACACTATAAAAC CCTTTTATTG chrVII:541613-542145 - 22 9.98e-14 ACGGTGAAAG CGTGATGTGATAGCCGTTACACTATATCGG ATGGTAATCT chrIX:370218-370609 - 55 9.98e-14 ACGGTGAAAG CGTGATGTGATAGCCGTTACACTATATCGG ATTATAATCT chrII:644978-645404 - 27 9.98e-14 ACGGTGAAAG CGTGATGTGATAGCCGTTACACTATATCGG ATAATAACTT chrVII:401388-401762 + 43 9.98e-14 ACGGTGAAAG CGTGATGTGATAGCCGTTACACTATATCGG AAACAAATTA chrV:487190-487611 + 22 9.98e-14 ACGGTGAAAG CGTGATGTGATAGCCGTTACACTATATCGG ATTAAATTCA chrVI:101170-101569 - 63 2.15e-13 GGAAGTCG CCCAAAGCGAGAATCATACCACTAGACCAC ACGCCCGAAT chrXV:464244-464710 - 29 2.15e-13 CAGGAAGTCG CCCAAAGCGAGAATCATACCACTAGACCAC ACGCCCTTGT chrI:138931-139361 - 62 2.15e-13 AGGAAGTCG CCCAAAGCGAGAATCATACCACTAGACCAC ACGCCCGTAC chrXIV:631716-632122 + 13 1.41e-12 ACCTCCCGCA CCCTAAGCGAGAATCATACCTCTAGACCAC ACGCCCGGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCBRAAGTGATAACCAYTACACTATABSAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:448506-448936 8.9e-18 19_[+3]_51 chrVIII:134097-134536 8.9e-18 55_[-3]_15 chrIV:802561-803004 8.9e-18 39_[+3]_31 chrIV:520773-521172 8.9e-18 50_[-3]_20 chrIII:168095-168605 8.9e-18 41_[+3]_29 chrXIII:808114-808536 8.9e-18 11_[+3]_59 chrII:350617-351104 5.5e-14 17_[-3]_53 chrVII:541613-542145 1e-13 21_[-3]_49 chrIX:370218-370609 1e-13 54_[-3]_16 chrII:644978-645404 1e-13 26_[-3]_44 chrVII:401388-401762 1e-13 42_[+3]_28 chrV:487190-487611 1e-13 21_[+3]_49 chrVI:101170-101569 2.1e-13 62_[-3]_8 chrXV:464244-464710 2.1e-13 28_[-3]_42 chrI:138931-139361 2.1e-13 61_[-3]_9 chrXIV:631716-632122 1.4e-12 12_[+3]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCBRAAGTGATAACCAYTACACTATABSAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCBRAAGTGATAACCAYTACACTATABSAC width=30 seqs=16 chrXII:448506-448936 ( 20) CCGAAAGTGATAACCACTACACTATAGGAC 1 chrVIII:134097-134536 ( 56) CCGAAAGTGATAACCACTACACTATAGGAC 1 chrIV:802561-803004 ( 40) CCGAAAGTGATAACCACTACACTATAGGAC 1 chrIV:520773-521172 ( 51) CCGAAAGTGATAACCACTACACTATAGGAC 1 chrIII:168095-168605 ( 42) CCGAAAGTGATAACCACTACACTATAGGAC 1 chrXIII:808114-808536 ( 12) CCGAAAGTGATAACCACTACACTATAGGAC 1 chrII:350617-351104 ( 18) CCGAAAGTGATAACCACTACACTATAAAAC 1 chrVII:541613-542145 ( 22) CGTGATGTGATAGCCGTTACACTATATCGG 1 chrIX:370218-370609 ( 55) CGTGATGTGATAGCCGTTACACTATATCGG 1 chrII:644978-645404 ( 27) CGTGATGTGATAGCCGTTACACTATATCGG 1 chrVII:401388-401762 ( 43) CGTGATGTGATAGCCGTTACACTATATCGG 1 chrV:487190-487611 ( 22) CGTGATGTGATAGCCGTTACACTATATCGG 1 chrVI:101170-101569 ( 63) CCCAAAGCGAGAATCATACCACTAGACCAC 1 chrXV:464244-464710 ( 29) CCCAAAGCGAGAATCATACCACTAGACCAC 1 chrI:138931-139361 ( 62) CCCAAAGCGAGAATCATACCACTAGACCAC 1 chrXIV:631716-632122 ( 13) CCCTAAGCGAGAATCATACCTCTAGACCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCBRAAGTGATAACCAYTACACTATABSAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 11.378 E= 4.0e-080 -1064 230 -1064 -1064 -1064 176 62 -1064 -1064 30 111 7 107 -1064 62 -225 175 -1064 -1064 -1064 121 -1064 -1064 7 -1064 -1064 230 -1064 -1064 30 -1064 133 -1064 -1064 230 -1064 175 -1064 -1064 -1064 -1064 -1064 30 133 175 -1064 -1064 -1064 121 -1064 62 -1064 -1064 189 -1064 -25 -1064 230 -1064 -1064 121 -1064 62 -1064 -1064 111 -1064 92 -25 -1064 -1064 133 133 30 -1064 -1064 -1064 230 -1064 -1064 166 -1064 -1064 -225 -1064 230 -1064 -1064 -1064 -1064 -1064 175 175 -1064 -1064 -1064 -1064 -1064 30 133 175 -1064 -1064 -1064 -225 30 89 7 -225 147 89 -1064 121 -1064 62 -1064 -1064 176 62 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCBRAAGTGATAACCAYTACACTATABSAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 16 E= 4.0e-080 0.000000 1.000000 0.000000 0.000000 0.000000 0.687500 0.312500 0.000000 0.000000 0.250000 0.437500 0.312500 0.625000 0.000000 0.312500 0.062500 1.000000 0.000000 0.000000 0.000000 0.687500 0.000000 0.000000 0.312500 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 1.000000 0.000000 0.000000 0.000000 0.687500 0.000000 0.312500 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.687500 0.000000 0.312500 0.000000 0.000000 0.437500 0.000000 0.562500 0.250000 0.000000 0.000000 0.750000 0.750000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.937500 0.000000 0.000000 0.062500 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 1.000000 0.000000 0.000000 0.000000 0.062500 0.250000 0.375000 0.312500 0.062500 0.562500 0.375000 0.000000 0.687500 0.000000 0.312500 0.000000 0.000000 0.687500 0.312500 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCBRAAGTGATAACCAYTACACTATABSAC MEME-3 regular expression -------------------------------------------------------------------------------- C[CG][GTC][AG]A[AT]G[TC]GA[TG]A[AG][CT]C[AG][TC][TA][AC]CACTA[TG]A[GTC][CG][AG][CG] -------------------------------------------------------------------------------- Time 980.28 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:332311-332799 9.85e-01 100 chrVIII:301083-301725 4.10e-01 100 chrXIV:715662-716626 7.46e-01 100 chrVII:115274-115744 6.24e-05 35_[-2(1.21e-08)]_44 chrXI:302703-303221 6.15e-01 100 chrI:166053-166593 5.12e-14 [-2(2.96e-09)]_7_[-1(3.11e-12)]_42 chrIV:1201523-1202294 9.73e-01 100 chrXVI:828910-829402 7.75e-03 43_[-1(6.24e-05)]_27 chrXIII:507857-508723 6.80e-01 100 chrVII:533802-535218 6.21e-01 100 chrVII:370777-371755 3.39e-01 100 chrXI:382121-382492 2.52e-01 100 chrIV:568713-569279 7.68e-06 51_[-1(3.40e-08)]_19 chrIII:127551-127913 6.66e-13 40_[-2(1.30e-10)]_8_[-1(6.35e-10)]_\ 1 chrXVI:425390-425566 6.57e-01 100 chrIV:915283-916270 7.44e-01 100 chrXI:551734-552384 2.19e-01 100 chrIX:300082-300692 8.70e-01 100 chrXIV:434625-434888 2.38e-01 100 chrIV:771116-771392 8.38e-01 100 chrXII:366042-366565 3.17e-01 100 chrIX:255135-257120 7.45e-01 100 chrII:192592-192770 4.27e-01 100 chrXI:513107-513590 8.92e-06 41_[+1(3.40e-08)]_29 chrXVI:188337-188934 1.58e-01 100 chrVII:397953-398444 1.77e-01 100 chrXV:710003-710509 1.62e-05 28_[-1(4.80e-09)]_42 chrXII:86901-87157 5.99e-01 100 chrVII:882359-884380 1.15e-01 100 chrXV:796726-797415 2.69e-01 100 chrXIII:67129-67995 2.88e-01 100 chrV:110555-110793 1.87e-01 100 chrXVI:622343-623009 6.96e-01 100 chrII:392501-392753 2.17e-01 100 chrIV:591740-592146 4.14e-01 100 chrXV:619145-624633 2.99e-01 100 chrIV:667781-668252 9.84e-09 48_[+1(1.95e-12)]_22 chrXIII:632797-633769 2.07e-01 100 chrVI:226330-227374 6.12e-01 100 chrXII:673482-674377 4.87e-01 100 chrVIII:237749-238136 9.48e-06 19_[+2(7.50e-09)]_60 chrX:617714-617814 4.56e-01 100 chrVII:287110-287638 2.72e-05 33_[+1(2.20e-09)]_37 chrVIII:455635-455856 3.52e-01 100 chrXII:796328-797715 9.33e-01 100 chrXIII:219754-221100 9.07e-01 100 chrXIII:923424-924382 2.63e-02 47_[+3(1.25e-05)]_23 chrXIV:576182-576559 3.47e-01 100 chrVII:364909-366718 3.71e-01 100 chrXVI:785679-786811 8.37e-01 100 chrXII:1051904-1052385 3.19e-07 22_[+2(1.36e-11)]_57 chrIV:1300486-1302539 9.14e-01 100 chrXV:505105-505531 8.35e-01 100 chrXIII:183783-184167 7.83e-04 15_[+2(1.06e-06)]_64 chrVII:919966-920774 4.91e-01 100 chrII:59818-60504 6.75e-01 100 chrX:415718-415818 1.75e-05 2_[+1(2.20e-09)]_68 chrVI:180710-181243 1.84e-07 55_[+1(8.68e-12)]_15 chrXVI:302631-303053 6.09e-01 100 chrVI:64194-65359 5.54e-01 100 chrXI:322418-322764 4.82e-01 100 chrXII:780985-781236 3.71e-02 100 chrXII:4-292 7.91e-01 100 chrXI:83978-84402 1.94e-05 74_[-2(8.48e-09)]_5 chrV:135189-135669 6.56e-08 53_[+1(5.64e-12)]_17 chrIV:768296-768967 1.17e-01 100 chrVII:93310-93573 4.66e-01 100 chrXIII:290598-291132 1.35e-07 19_[-1(1.73e-11)]_51 chrXIII:808114-808536 1.97e-14 11_[+3(8.87e-18)]_59 chrXII:1028820-1029002 5.03e-01 100 chrXII:426912-427417 7.68e-06 51_[-1(3.40e-08)]_19 chrVII:1050280-1050604 8.07e-01 100 chrXI:140798-141490 9.94e-01 100 chrXI:519520-521720 9.19e-01 100 chrXII:924544-925086 5.17e-01 100 chrXVI:297116-297357 2.90e-02 100 chrV:152468-153168 8.51e-01 100 chrXII:329428-329888 4.80e-01 100 chrIV:893942-894434 3.67e-02 51_[-2(5.70e-05)]_28 chrXII:95552-95888 5.50e-01 100 chrVII:73474-74143 1.00e+00 100 chrXVI:519678-520693 1.35e-01 68_[-1(8.04e-05)]_2 chrV:487190-487611 3.44e-10 21_[+3(9.98e-14)]_49 chrXIV:569698-570148 4.91e-16 1_[+1(1.95e-12)]_8_[+2(1.36e-11)]_\ 40 chrVII:799020-799795 3.80e-02 100 chrXII:262432-263939 7.24e-01 100 chrXVI:406196-407760 5.11e-01 100 chrXII:818486-819419 7.25e-01 100 chrXV:925197-925408 3.96e-01 100 chrVIII:48201-48614 6.96e-01 100 chrVI:191332-191799 4.59e-06 70_[+2(8.65e-10)]_9 chrXI:67751-69407 4.79e-01 100 chrXV:1025746-1026043 6.15e-01 100 chrVII:794189-794595 9.67e-01 100 chrXV:1-1017 6.39e-01 100 chrVII:726422-726806 8.15e-01 100 chrXVI:282262-282961 4.10e-01 100 chrIII:162165-163110 8.56e-01 100 chrXVI:821682-822311 1.94e-01 100 chrVIII:382572-383352 1.17e-01 100 chrV:362165-362616 5.16e-01 100 chrXI:618772-619279 2.49e-01 100 chrXVI:641239-641590 1.05e-01 100 chrXII:962821-963249 1.00e-05 42_[+2(8.48e-09)]_37 chrXII:234599-234906 8.03e-01 100 chrII:478973-479375 9.78e-01 100 chrVIII:20888-21552 8.17e-01 100 chrXVI:901635-902159 4.90e-01 100 chrXII:1011631-1012797 2.92e-01 100 chrXIV:729274-730016 3.79e-01 100 chrXIII:21-182 9.13e-01 100 chrIV:1256701-1257276 3.57e-01 100 chrV:358227-358577 3.59e-01 100 chrVI:95469-95965 5.67e-01 100 chrII:136039-136243 8.93e-02 100 chrXVI:942426-942708 2.36e-01 100 chrXV:438470-439002 1.69e-07 14_[-1(2.20e-09)]_56 chrIV:83321-84037 9.79e-01 100 chrI:142129-143692 2.57e-03 9_[+2(1.59e-06)]_70 chrXV:253758-254700 9.96e-01 100 chrVII:706921-707338 1.60e-05 36_[+1(7.23e-09)]_34 chrXIII:463307-463886 7.68e-06 41_[-1(3.40e-08)]_29 chrVIII:122375-122611 9.07e-02 2_[+3(8.18e-05)]_68 chrIV:411030-411665 8.62e-01 100 chrV:140194-140933 5.57e-01 100 chrVII:401388-401762 8.28e-18 9_[+1(1.73e-11)]_3_[+3(9.98e-14)]_\ 28 chrXV:988952-989585 4.53e-01 100 chrXIII:572691-573256 2.48e-03 4_[+2(3.56e-07)]_75 chrXV:832260-832766 4.92e-01 100 chrX:531596-531696 1.96e-07 17_[-1(8.68e-12)]_53 chrVII:544396-544920 1.58e-01 100 chrX:378173-378273 2.02e-04 52_[-2(3.93e-08)]_27 chrXII:459604-460684 4.72e-01 100 chrXII:129804-130116 8.94e-01 100 chrIV:392544-392872 5.26e-01 100 chrXIII:480401-480868 4.96e-08 44_[+1(5.64e-12)]_26 chrXIV:196829-197125 6.57e-01 100 chrIV:835742-837987 3.99e-01 100 chrVII:405300-405784 2.14e-08 11_[-1(1.67e-12)]_59 chrXI:364589-365201 7.92e-01 100 chrXI:220710-220890 7.70e-01 100 chrV:27031-28049 5.26e-01 100 chrXI:458371-458922 4.30e-01 100 chrI:1-1137 2.20e-03 30_[-2(8.00e-07)]_49 chrX:374208-374308 9.09e-10 66_[+1(1.67e-12)]_4 chrIV:538956-539301 2.50e-01 100 chrVII:344212-345321 9.84e-01 100 chrX:538370-538470 4.51e-06 4_[-1(1.98e-10)]_66 chrXI:24937-26458 9.40e-01 100 chrVII:968930-969174 6.47e-02 100 chrXIII:747551-748163 9.91e-01 100 chrVII:878561-879039 5.28e-01 100 chrXIII:309613-310021 9.83e-01 100 chrIII:209879-210463 6.61e-01 100 chrVIII:103599-105514 2.18e-01 100 chrM:58254-58723 8.64e-01 100 chrVII:412140-412558 3.27e-11 2_[+1(1.42e-10)]_8_[+2(3.93e-08)]_\ 39 chrVIII:470452-470764 9.95e-01 100 chrXVI:404410-406038 2.90e-01 100 chrIV:44022-44560 4.57e-01 100 chrVII:974889-975124 7.69e-01 100 chrXIII:161945-164249 3.17e-01 100 chrV:334976-336569 3.53e-01 100 chrVI:224330-225969 2.21e-01 100 chrXII:931682-932528 3.60e-01 100 chrXII:232175-234217 1.33e-01 39_[-1(8.50e-05)]_31 chrXII:855996-857541 4.46e-01 100 chrIII:163419-163923 4.28e-01 100 chrII:644978-645404 8.28e-18 26_[-3(9.98e-14)]_3_[-1(1.73e-11)]_\ 11 chrXIV:721186-721776 9.77e-01 100 chrX:58999-59099 7.94e-07 9_[+2(8.43e-11)]_70 chrXIV:764054-764232 5.72e-01 100 chrXI:258406-258961 1.96e-01 100 chrXIII:797802-798181 2.07e-01 100 chrVII:1004046-1004380 2.65e-01 100 chrXIV:374704-375102 3.28e-13 22_[-2(7.50e-09)]_25_[-1(5.49e-11)]_\ 2 chrX:291077-291177 1.93e-01 100 chrXIV:173256-174693 6.60e-01 100 chrX:227744-227844 3.21e-01 100 chrV:305812-306432 2.70e-01 100 chrXII:734549-734998 5.40e-01 100 chrXVI:856758-857131 8.93e-11 14_[-2(2.63e-08)]_7_[-1(1.52e-09)]_\ 28 chrV:122781-123043 4.17e-01 100 chrVII:1048811-1049900 3.16e-01 100 chrXVI:822605-824299 3.50e-01 100 chrXV:571742-572154 1.33e-01 100 chrX:663721-663821 6.31e-01 100 chrI:71798-73614 3.10e-01 100 chrX:197198-197298 9.46e-05 3_[+2(2.63e-08)]_76 chrXII:372503-372929 2.55e-01 100 chrXII:257745-259215 1.89e-01 100 chrVII:774142-774740 4.90e-01 100 chrXII:636752-640212 1.23e-01 100 chrXI:430587-431732 7.81e-01 100 chrXVI:76083-76805 1.72e-01 100 chrII:192920-193688 1.91e-01 100 chrXIV:602110-602565 5.52e-16 31_[-2(1.36e-11)]_8_[-1(1.95e-12)]_\ 10 chrX:390831-390931 7.75e-01 100 chrIV:1236546-1237945 1.06e-01 100 chrX:157420-157520 5.71e-01 100 chrXIV:632436-632873 1.11e-12 1_[-2(1.30e-10)]_8_[-1(6.35e-10)]_\ 40 chrXIII:586411-586899 3.27e-11 38_[+1(1.42e-10)]_8_[+2(3.93e-08)]_\ 3 chrXII:975814-976255 8.33e-13 6_[+1(6.35e-10)]_8_[+2(1.30e-10)]_\ 35 chrXIV:241385-242177 8.61e-02 100 chrVII:271015-272153 9.06e-02 100 chrXI:379490-379924 3.27e-11 29_[-2(3.93e-08)]_8_[-1(1.42e-10)]_\ 12 chrII:36159-36628 9.27e-05 61_[-2(7.50e-09)]_18 chrVIII:562252-562584 9.78e-01 100 chrIII:123385-123828 2.56e-16 56_[+3(1.41e-12)]_14 chrXIV:330785-331260 9.49e-01 100 chrXVI:502806-503235 4.66e-01 100 chrXII:710352-710949 5.33e-01 100 chrIV:45187-46167 4.17e-01 100 chrXII:92375-92845 1.44e-07 52_[-1(3.33e-11)]_18 chrXV:79744-80171 3.06e-01 100 chrXII:728301-728560 9.04e-01 100 chrXII:708493-710108 5.64e-02 100 chrXVI:338582-339124 3.77e-05 52_[+1(4.80e-09)]_18 chrXI:355456-356029 5.64e-01 100 chrXV:31118-31550 7.44e-01 100 chrXIII:378998-379610 2.70e-05 56_[+1(2.20e-09)]_14 chrX:571002-571102 7.16e-01 100 chrXVI:627380-627669 2.41e-01 100 chrII:326589-327086 1.07e-09 12_[+1(5.19e-10)]_8_[+2(9.99e-07)]_\ 29 chrVIII:499645-500201 8.20e-01 100 chrXIII:540213-540737 7.75e-01 100 chrV:269251-270868 4.11e-02 100 chrXII:468762-468973 4.26e-04 44_[-2(8.00e-07)]_35 chrV:469093-469650 7.80e-01 100 chrXII:783834-784638 3.57e-01 100 chrVI:269499-270161 9.01e-01 100 chrXV:866393-868104 2.55e-01 100 chrI:81905-82376 5.20e-01 100 chrXV:677956-679216 1.00e+00 100 chrXI:558702-559431 9.24e-01 100 chrV:225480-225680 7.57e-01 100 chrIV:437543-438008 3.18e-05 53_[-2(3.40e-09)]_26 chrVI:167253-167677 1.16e-03 28_[-2(5.26e-07)]_51 chrXIII:248065-248353 8.21e-01 100 chrXIII:732000-732449 7.72e-01 100 chrXI:141702-142796 6.83e-01 100 chrXI:259162-259540 4.75e-01 100 chrX:115585-115685 5.55e-01 100 chrIV:465110-465541 3.65e-01 100 chrXV:216181-216732 7.05e-01 100 chrV:438496-438957 3.27e-11 30_[-2(3.93e-08)]_8_[-1(1.42e-10)]_\ 11 chrXVI:769019-769465 1.10e-05 22_[+1(2.20e-09)]_48 chrVII:851040-851564 9.72e-01 100 chrXV:288017-288460 1.69e-07 10_[-2(5.26e-07)]_23_[-1(7.37e-08)]_\ 16 chrX:290138-290238 1.34e-01 100 chrX:701738-701838 6.59e-01 100 chrXI:217458-218280 6.37e-01 100 chrXII:167787-168252 2.04e-05 28_[+2(3.40e-09)]_51 chrIV:1449777-1451224 9.90e-01 100 chrXII:628077-628809 2.83e-01 100 chrIV:490969-491372 8.68e-01 100 chrXVI:701872-702324 5.56e-01 100 chrIII:214104-214692 1.68e-01 100 chrXI:46588-47002 1.75e-01 100 chrII:405679-406226 9.09e-10 9_[-1(1.67e-12)]_61 chrXV:232038-232332 2.63e-01 100 chrIX:0-265 9.78e-01 100 chrXV:987019-987835 1.36e-01 100 chrIV:229443-230805 9.89e-01 100 chrXII:805985-807130 4.28e-01 100 chrVII:254131-254632 8.61e-01 100 chrII:266208-266636 2.41e-14 12_[-2(8.43e-11)]_7_[-1(4.28e-11)]_\ 30 chrXIII:306517-307009 9.70e-01 100 chrXIV:102510-102960 8.81e-13 37_[-2(1.30e-10)]_8_[-1(6.35e-10)]_\ 4 chrXVI:642280-643305 8.78e-01 100 chrXI:162329-162738 1.68e-08 11_[+1(1.67e-12)]_59 chrV:138449-139946 4.02e-02 14_[+1(6.99e-05)]_56 chrXIII:42151-42439 6.61e-01 100 chrVII:971778-971986 4.83e-01 100 chrXVI:40212-40659 4.45e-01 100 chrVI:210462-211115 3.66e-01 100 chrVII:56369-58372 6.42e-01 100 chrIV:599794-600292 3.16e-01 100 chrXIII:122920-123106 3.49e-01 100 chrXI:113977-114576 4.71e-01 100 chrXIII:768144-768650 8.93e-11 29_[+1(1.52e-09)]_7_[+2(2.63e-08)]_\ 13 chrXIV:560574-561001 2.06e-06 [+2(8.43e-11)]_79 chrV:431018-431554 2.86e-02 100 chrVII:736195-736527 1.66e-08 62_[-1(1.67e-12)]_8 chrXII:241584-242065 8.32e-01 100 chrVI:223250-224158 5.59e-01 100 chrVIII:74734-75928 9.62e-01 100 chrX:542569-542669 5.49e-02 5_[+3(1.64e-05)]_65 chrIII:262723-263160 9.29e-01 100 chrIV:340201-341632 9.49e-01 100 chrII:350617-351104 3.65e-18 17_[-3(5.50e-14)]_3_[-1(1.12e-10)]_\ 20 chrVI:75418-75877 4.75e-01 100 chrX:355166-355266 9.09e-10 9_[-1(1.67e-12)]_61 chrIV:307985-308676 8.12e-01 100 chrI:229118-230200 1.83e-03 34_[+2(8.00e-07)]_45 chrXII:605125-605604 4.71e-01 100 chrIII:223498-223904 2.74e-01 100 chrIV:508387-509057 3.67e-01 100 chrXV:228109-228563 2.74e-06 51_[-2(1.30e-10)]_28 chrII:429560-430860 5.17e-01 100 chrXV:976197-976686 2.00e-09 36_[-2(3.56e-07)]_7_[-1(9.44e-10)]_\ 6 chrX:557139-557239 5.36e-01 100 chrM:59561-60001 1.00e+00 100 chrIV:129791-131010 7.88e-02 53_[-3(3.08e-05)]_17 chrV:176930-177416 2.69e-07 9_[-1(1.73e-11)]_61 chrX:396572-396672 2.31e-11 8_[+1(8.68e-12)]_5_[+2(1.06e-06)]_\ 36 chrV:235387-237035 7.33e-01 100 chrX:244393-244493 1.00e+00 100 chrXIII:131626-132085 1.68e-08 27_[+1(1.67e-12)]_43 chrVIII:504235-505597 2.27e-02 22_[-2(4.51e-05)]_57 chrIV:358036-358439 9.11e-01 100 chrIV:1013411-1013971 4.89e-01 100 chrXVI:75332-75918 9.29e-01 100 chrXII:875162-875649 6.24e-05 27_[-2(1.21e-08)]_52 chrIV:1355381-1356251 8.16e-01 100 chrXIII:433329-433747 9.31e-01 100 chrXI:98799-100041 2.95e-01 100 chrIX:386683-386876 9.76e-01 100 chrX:702112-702212 4.78e-01 100 chrXIII:772935-773308 5.00e-01 100 chrXII:897705-899715 6.66e-01 100 chrIII:177082-178786 4.97e-01 100 chrXI:158198-158684 1.00e+00 100 chrXIII:499142-500712 9.46e-01 100 chrXVI:193190-194608 5.57e-01 100 chrVI:157736-158249 5.59e-05 37_[+2(7.50e-09)]_42 chrX:424267-424367 1.73e-05 37_[+2(8.48e-09)]_42 chrXV:881754-882482 6.27e-01 100 chrXIV:694407-694832 8.90e-01 100 chrXIV:33447-34228 3.93e-01 100 chrIV:1328854-1330044 4.24e-01 100 chrXIII:661685-662033 1.63e-02 100 chrXI:0-1087 7.73e-04 62_[-2(4.63e-07)]_17 chrVIII:385590-386525 9.93e-01 100 chrXV:274450-275011 2.14e-01 100 chrVIII:466769-467198 7.21e-01 100 chrXIII:296729-298914 8.58e-02 100 chrXV:725245-725817 4.07e-01 100 chrV:77995-79799 3.29e-01 100 chrVII:398940-400166 6.84e-02 100 chrXIII:168613-169288 1.49e-01 100 chrIX:183300-183704 4.58e-07 33_[+2(1.36e-11)]_46 chrXIII:267697-268306 4.97e-01 100 chrII:168800-169364 4.40e-01 100 chrII:642848-643268 1.31e-05 6_[+1(7.23e-09)]_64 chrXV:83186-83465 4.77e-01 100 chrXVI:646450-646635 4.84e-01 100 chrVII:440339-441605 6.76e-01 100 chrXI:334056-334937 1.58e-01 100 chrIII:137764-138981 1.75e-01 17_[+2(8.90e-05)]_62 chrVII:730938-731383 1.11e-12 33_[-2(1.30e-10)]_8_[-1(6.35e-10)]_\ 8 chrVII:905264-905699 3.03e-01 100 chrXI:518621-519350 2.62e-01 100 chrVII:845468-846047 4.42e-01 100 chrXV:353891-354294 2.41e-14 6_[+1(4.28e-11)]_7_[+2(8.43e-11)]_\ 36 chrXII:521888-522537 1.77e-01 100 chrXIV:783339-784325 5.67e-02 43_[-2(6.29e-05)]_36 chrVIII:505788-506208 9.27e-01 100 chrXVI:718424-719979 5.71e-01 100 chrIX:248625-249521 3.21e-01 100 chrXII:348126-348703 1.27e-01 100 chrII:180992-181917 9.94e-01 100 chrXIV:739078-740142 9.68e-01 100 chrXVI:744069-744563 1.98e-05 51_[-1(7.23e-09)]_19 chrVII:787034-787634 1.64e-01 100 chrV:435602-436006 5.09e-11 5_[+1(5.64e-12)]_7_[+2(1.84e-06)]_\ 37 chrXVI:819152-819869 3.41e-08 75_[-2(1.36e-11)]_4 chrIV:579045-580677 6.17e-01 100 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chrXI:74421-74888 9.51e-14 26_[-2(1.30e-10)]_8_[-1(6.35e-10)]_\ 15 chrV:288232-288712 5.84e-06 74_[+2(7.30e-10)]_5 chrIII:168095-168605 8.20e-22 8_[+1(1.12e-10)]_3_[+3(8.87e-18)]_\ 29 chrII:347426-347853 4.66e-06 20_[-2(8.48e-09)]_59 chrVII:876176-877093 6.29e-01 100 chrXVI:810460-810858 1.38e-06 73_[-2(1.30e-10)]_6 chrV:522787-522978 4.45e-01 100 chrXIV:546950-547421 7.35e-08 23_[-1(3.33e-11)]_47 chrIV:322750-323622 7.63e-01 100 chrXIII:158767-158976 8.30e-01 100 chrX:517649-517749 5.12e-05 9_[+1(4.80e-09)]_61 chrVI:137251-137909 2.35e-06 1_[+2(1.30e-10)]_78 chrV:423081-424326 3.48e-01 100 chrXII:544320-544713 5.91e-02 100 chrV:302870-303369 9.40e-01 100 chrXIII:223674-224400 8.57e-01 100 chrXV:1027897-1029405 7.13e-01 100 chrXVI:108617-114944 6.29e-01 100 chrXIII:225033-225994 5.84e-01 100 chrXII:47714-49469 9.12e-01 100 chrII:118267-118732 9.90e-01 100 chrXIII:420339-420835 1.19e-06 58_[+1(1.42e-10)]_12 chrIV:309534-310001 7.57e-01 100 chrXVI:879880-880558 1.00e+00 100 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chrIII:68413-68705 3.33e-01 100 chrIV:1095196-1095672 7.52e-05 49_[+2(7.50e-09)]_30 chrVII:856675-857750 8.59e-01 100 chrXII:423680-424591 1.61e-01 100 chrXI:108729-110138 8.04e-01 100 chrXIV:6467-7265 1.16e-01 52_[+2(8.63e-05)]_27 chrX:745099-745199 4.52e-03 73_[-2(1.84e-06)]_6 chrII:415451-415888 9.73e-01 100 chrIV:998225-998678 8.47e-01 100 chrIV:914045-914562 4.80e-01 100 chrXII:370515-371035 4.12e-01 100 chrVII:291531-291888 3.48e-01 100 chrVII:592533-592962 8.33e-01 100 chrIX:254182-254582 3.96e-01 100 chrXII:416646-417739 8.64e-01 100 chrVII:766106-766387 3.07e-01 100 chrX:622087-622187 2.74e-01 100 chrIV:221669-222314 1.77e-01 100 chrXII:214695-215155 5.12e-14 15_[+1(3.11e-12)]_7_[+2(2.96e-09)]_\ 27 chrXIV:493919-495639 4.08e-01 100 chrIX:381947-383018 6.42e-01 100 chrIV:1150686-1151199 1.32e-05 21_[+2(8.65e-10)]_58 chrIV:928262-928534 4.03e-01 100 chrXI:282824-284829 3.53e-01 100 chrXII:201642-202950 7.05e-01 100 chrVII:986862-987627 5.79e-01 100 chrX:233729-233829 4.36e-05 13_[-1(2.87e-09)]_57 chrXV:854002-854429 5.12e-14 29_[+1(3.11e-12)]_7_[+2(2.96e-09)]_\ 13 chrVIII:51158-51685 2.19e-01 100 chrX:204538-204638 6.79e-05 [-1(3.40e-08)]_70 chrXV:980482-981028 1.51e-07 44_[-1(3.33e-11)]_26 chrIV:955039-955524 1.96e-03 12_[+3(2.60e-05)]_58 chrXI:163284-164368 1.07e-01 100 chrVIII:411006-411647 3.15e-01 100 chrXII:253173-255152 2.55e-01 100 chrXI:614195-614433 6.06e-01 100 chrXV:639085-639445 5.65e-01 100 chrXVI:481460-481836 6.93e-01 100 chrII:197274-197860 7.50e-09 12_[-1(1.95e-12)]_58 chrV:340946-341561 8.33e-01 100 chrXIII:123274-124733 6.59e-01 100 chrXVI:899961-900509 4.55e-01 100 chrIV:1175599-1176054 7.96e-04 59_[-2(3.56e-07)]_20 chrIX:96813-97618 9.94e-01 100 chrXVI:653918-655046 8.69e-01 100 chrVIII:132861-133355 1.82e-05 21_[+2(3.40e-09)]_58 chrVIII:115909-116430 6.86e-07 32_[+2(8.43e-11)]_47 chrXIV:306367-306690 8.93e-01 100 chrIV:321637-321975 9.49e-01 100 chrVII:345834-346660 3.56e-01 100 chrVII:422890-423370 4.56e-05 18_[-2(1.08e-08)]_61 chrXI:326157-327584 2.37e-01 100 chrX:73345-73445 6.85e-01 100 chrXV:758935-759535 3.54e-01 100 chrIV:1488870-1490454 7.35e-01 100 chrVIII:134097-134536 1.58e-15 55_[-3(8.87e-18)]_15 chrVII:555095-557464 9.88e-01 100 chrXIII:872447-873084 1.50e-01 100 chrIV:306673-307477 8.12e-01 100 chrXIII:504679-505162 5.90e-05 31_[-2(1.08e-08)]_48 chrX:422746-422846 8.66e-06 [-1(9.44e-10)]_70 chrIII:78326-78694 9.88e-01 100 chrXII:903184-903682 1.41e-01 100 chrXIII:549939-552265 7.63e-01 100 chrIV:1524143-1525678 7.11e-01 100 chrXV:215886-216039 5.75e-01 100 chrXIII:388020-390246 8.36e-03 35_[+2(9.34e-06)]_44 chrV:207136-207593 2.39e-02 100 chrXIII:306190-306358 8.18e-01 100 chrV:122146-122636 8.63e-01 100 chrVII:1083512-1084383 2.30e-01 100 chrIV:1278595-1279068 6.30e-01 100 chrVI:101170-101569 2.99e-11 62_[-3(2.15e-13)]_8 chrXI:313240-313652 4.27e-06 12_[+1(2.41e-07)]_58 chrVII:738899-739476 8.82e-09 20_[-1(1.95e-12)]_50 chrVIII:147444-148675 1.42e-01 100 chrXII:448506-448936 2.84e-15 19_[+3(8.87e-18)]_51 chrX:651223-651323 5.35e-01 100 chrXIII:320974-321329 9.36e-06 53_[+1(1.52e-09)]_17 chrXIII:407933-408736 1.52e-01 100 chrXV:594213-594660 3.28e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************