******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--YAP3/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:331961-334664 1.0000 100 chrVIII:210821-212254 1.0000 100 chrXV:287-993 1.0000 100 chrVII:73618-74232 1.0000 100 chrXI:112155-112531 1.0000 100 chrI:166046-166553 1.0000 100 chrIV:1305369-1306359 1.0000 100 chrXVI:818634-819904 1.0000 100 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chrXIV:575062-576293 1.0000 100 chrVII:845370-845899 1.0000 100 chrXI:163326-164517 1.0000 100 chrXV:980486-981155 1.0000 100 chrXV:1003865-1005205 1.0000 100 chrXIII:761007-764108 1.0000 100 chrXVI:775676-776210 1.0000 100 chrX:154615-154715 1.0000 100 chrXV:960434-960658 1.0000 100 chrXIV:661344-661924 1.0000 100 chrXII:84170-84416 1.0000 100 chrII:326564-327203 1.0000 100 chrXI:379156-380225 1.0000 100 chrII:36188-36515 1.0000 100 chrVII:706636-707324 1.0000 100 chrVIII:562330-562565 1.0000 100 chrVIII:467996-468206 1.0000 100 chrV:151580-153016 1.0000 100 chrXIII:56022-56887 1.0000 100 chrXI:313050-313666 1.0000 100 chrX:348744-348844 1.0000 100 chrVII:736188-736824 1.0000 100 chrXIII:91802-92114 1.0000 100 chrX:450892-450992 1.0000 100 chrXIII:480346-480892 1.0000 100 chrXI:411212-414530 1.0000 100 chrVIII:555911-556363 1.0000 100 chrXVI:581742-582798 1.0000 100 chrXII:656665-657173 1.0000 100 chrIV:1175597-1176116 1.0000 100 chrXI:558642-559455 1.0000 100 chrIX:98895-99556 1.0000 100 chrXV:226391-227170 1.0000 100 chrIX:370213-370774 1.0000 100 chrXI:83520-84457 1.0000 100 chrXV:979689-980286 1.0000 100 chrXI:518900-519504 1.0000 100 chrXIII:320938-321327 1.0000 100 chrV:354698-355400 1.0000 100 chrVII:364865-366990 1.0000 100 chrXII:673223-674512 1.0000 100 chrIV:520348-521445 1.0000 100 chrIV:1301563-1302628 1.0000 100 chrXVI:789654-789957 1.0000 100 chrXIII:886922-889201 1.0000 100 chrIV:946155-946846 1.0000 100 chrIV:83109-83817 1.0000 100 chrII:81894-83011 1.0000 100 chrVI:222908-223830 1.0000 100 chrVII:857254-857621 1.0000 100 chrXIII:362805-364057 1.0000 100 chrVIII:119680-120165 1.0000 100 chrIX:438785-439511 1.0000 100 chrVII:277485-278743 1.0000 100 chrIX:316701-318312 1.0000 100 chrXI:578752-579352 1.0000 100 chrXV:339923-340710 1.0000 100 chrVII:110436-110918 1.0000 100 chrXV:80356-82623 1.0000 100 chrVII:794119-794745 1.0000 100 chrVII:959962-961526 1.0000 100 chrV:138226-140772 1.0000 100 chrXIV:505532-507730 1.0000 100 chrIX:98153-98696 1.0000 100 chrXIV:88644-89933 1.0000 100 chrII:405562-406729 1.0000 100 chrXIII:747682-748878 1.0000 100 chrIV:43954-44518 1.0000 100 chrX:435608-435708 1.0000 100 chrII:642882-643399 1.0000 100 chrVII:479135-482999 1.0000 100 chrXVI:412253-413777 1.0000 100 chrXIV:392126-392755 1.0000 100 chrXII:784173-784681 1.0000 100 chrXI:100223-106032 1.0000 100 chrV:122134-123040 1.0000 100 chrXIII:463203-464066 1.0000 100 chrIV:488459-489201 1.0000 100 chrIII:141875-143021 1.0000 100 chrXVI:622291-622855 1.0000 100 chrXII:592116-593153 1.0000 100 chrIV:1269877-1270995 1.0000 100 chrII:373502-375870 1.0000 100 chrVII:779431-779978 1.0000 100 chrVI:136291-136769 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--YAP3/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--YAP3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--YAP3/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.312 C 0.188 G 0.188 T 0.312 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--YAP3/background): A 0.320 C 0.180 G 0.180 T 0.320 ******************************************************************************** ******************************************************************************** MOTIF SGGRHTCGAACCSVBGACCTY MEME-1 width = 21 sites = 77 llr = 1273 E-value = 1.0e-226 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGGRHTCGAACCSVBGACCTY MEME-1 Description -------------------------------------------------------------------------------- Simplified A 12:64:::aa:::3:261::1 pos.-specific C 4:::2:7:::a7522:26625 probability G 57a41::a::::344811221 matrix T ::::3a3::::2114:22264 bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 * * ** * Relative 1.5 * ****** * Entropy 1.2 ** ******* * (23.9 bits) 1.0 *** ******** * 0.7 **** ******** * ** 0.5 **** ******** ** **** 0.2 **** **************** 0.0 --------------------- Multilevel GGGAATCGAACCCGGGACCTC consensus CA GT T TGATA TG T sequence CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRHTCGAACCSVBGACCTY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIII:123379-123746 + 75 3.14e-14 GGGGCGAGCC GGGACTCGAACCCGGGACCTC CCGCA chrXIV:631515-632184 + 57 3.14e-14 GGGGCGAGCC GGGACTCGAACCCGGGACCTC CCGCACCCTA chrVII:794119-794745 - 77 1.66e-11 AAC CGGAATCGAACCGATGACCTC TTCCTTGCAA chrV:311755-312315 + 48 1.66e-11 TGGACGCAAC CGGAATCGAACCGATGACCTC TTCCTTGCAA chrXII:214626-215162 + 49 1.66e-11 TGGACGCAAC CGGAATCGAACCGATGACCTC TTCCTTGCAA chrXV:853968-854401 + 63 1.66e-11 TGGACGCAAC CGGAATCGAACCGATGACCTC TTCCTTGCAA chrI:166046-166553 - 60 1.66e-11 TGGACGCAAC CGGAATCGAACCGATGACCTC TTCCTTGCAA chrXIII:320938-321327 + 75 1.76e-10 TGGACGAGTC CGGAATCGAACCGGAGACCTC TCCCA chrXII:656665-657173 + 75 1.76e-10 TGGACGAGTC CGGAATCGAACCGGAGACCTC TCCCA chrXIII:480346-480892 + 62 1.76e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrVI:226483-226910 + 52 1.76e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrX:197106-197206 + 19 1.76e-10 TGGACGAGTC CGGAATCGAACCGGAGACCTC TCCCATGCTA chrXI:202861-203297 - 12 1.76e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrX:414803-414903 - 22 1.76e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrVII:122019-122695 - 4 1.76e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATG chrV:135173-135690 + 54 1.76e-10 AGCCCTGTAG GGGGCTCGAACCCCTAACCTT ATGATTAAGA chrXIV:569678-570025 + 76 2.81e-10 TGGTCTCTAG CGGGATCGAACCGCTGATCCC CGCG chrVIII:388665-389218 + 12 3.28e-10 GGGGCGAGCT GGGAATTGAACCCAGGGCCTC TCGCATGCTT chrXIV:546956-547443 - 17 3.28e-10 GGGGCGAGCT GGGAATTGAACCCAGGGCCTC TCGCATGCTT chrVII:779431-779978 - 3 5.88e-10 TGAGCGGTAC GAGAATCGAACCCGTGTCCCC AC chrIX:370213-370774 - 15 8.90e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrIX:197347-197974 - 23 8.90e-10 CTCCGAAGCG GGGAGTCGAACCCCGGTCTCC ACGGTGAGAA chrII:644982-645446 - 44 8.90e-10 CTCCGATACG GGGAGTCGAACCCCGGTCTCC ACGGTGAAAG chrVIII:134064-134654 - 53 1.03e-09 AGGTCCTACC CGGATTCGAACCGGGGTTGTC CGGATCAAAA chrIII:168066-168636 + 10 1.03e-09 GGTCCTACC CGGATTCGAACCGGGGTTGTC CGGATCAAAA chrXI:578752-579352 - 28 1.34e-09 CTCCTCATAG GGGGCTCGAACCCCTGACATT TCGGTATCCT chrVII:114939-116138 - 65 1.34e-09 CTCCTCATAG GGGGCTCGAACCCCTGACATT TCGGTATCCT chrIV:434003-434516 + 65 2.24e-09 TGCTTCCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrIX:174707-175380 - 80 2.24e-09 . CGGATTTGAACCGATGATCTC CACATTACTA chrXV:353768-354306 + 64 2.24e-09 TGCTTCCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrXV:113480-114205 - 52 2.24e-09 TGCTTCCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrIX:325515-326056 - 55 2.24e-09 TGCTTCCAAT CGGATTTGAACCGATGATCTC CACATTACTA chrV:130772-131443 + 35 2.54e-09 AGGTCTTACC CGGATTCGAACCGGGGTTGTT CGGATCAAAA chrX:355128-355228 - 36 3.25e-09 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGATTAGAA chrXI:162222-162766 + 53 3.25e-09 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGATTAGAA chrVII:405301-405778 - 22 3.25e-09 CACTCACGAT GGGGGTCGAACCCATAATCTT CTGATTAGAA chrIV:488459-489201 + 27 3.64e-09 TGATCCAACC GAGGTTCGAACTCGGGATCTT CGCCGTGTAA chrXV:593948-594781 + 50 3.64e-09 TGCGCAAGCC GGGAATCGAACCCGGGCCTCA TGCTTGGGAA chrVI:162007-162486 - 72 3.64e-09 CGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrXVI:572052-572580 - 43 3.64e-09 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrXIII:183675-184164 + 39 3.64e-09 TGCGCAAGCC CGGAATCGAACCGGGGGCCCA ACGATGGCAA chrXIII:420303-420905 + 44 4.62e-09 TGATTTCGCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrXV:663320-664327 + 49 4.62e-09 CGATTTCGCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrXIII:372134-372719 + 79 4.62e-09 TGATTTCGCC CAGGATCGAACTGGGGACGTT C chrVII:412084-412585 + 20 4.62e-09 TGATTTCGCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrXIII:586407-586904 + 41 4.62e-09 TGATTTCGCC CAGGATCGAACTGGGGACGTT CTGCGTGTTA chrIV:1175597-1176116 - 65 1.54e-08 TGCTCCAGGG GAGGTTCGAACTCTCGACCTT CAGATTATGA chrX:390826-390926 + 44 1.54e-08 TGCTCCAGGG GAGGTTCGAACTCTCGACCTT CAGATTATGA chrXVI:622291-622855 + 27 2.30e-08 TGCGAATTCT GTGGATCGAACACAGGACCTC CAGATAACTT chrXIV:374753-375097 - 54 2.30e-08 TGCGAACTCT GTGGATCGAACACAGGACCTC CAGATGACTT chrVIII:358258-358802 + 8 2.30e-08 GAATTCT GTGGATCGAACACAGGACCTC CAGATAACTT chrX:617770-617870 - 78 5.83e-08 AA GGGATTCGAACCCTTGCATCC GAAGATATCA chrXIV:632420-632906 - 29 8.25e-08 CGACCCCAGT GAGGGTTGAACTCACGATCTT GCGATTAACA chrVII:730924-731436 - 50 8.25e-08 CGACCCCAGT GAGGGTTGAACTCACGATCTT GCGATTAACA chrXV:487182-487731 - 76 8.25e-08 CAGT GAGGGTTGAACTCACGATCTT GCGATTAACA chrXIII:463203-464066 - 11 1.06e-07 CTCCGCGACG GGGAATTGAACCCCGATCTGG CACGCGACAA chrVII:531470-531779 - 77 1.06e-07 ACG GGGAATTGAACCCCGATCTGG CACGCGACAA chrII:226891-227396 - 33 1.06e-07 CGACAACTGC AGGACTCGAACCTGCGCGGGC AAAGCCCAAA chrX:541341-541441 - 15 1.06e-07 CTCCGCGACG GGGAATTGAACCCCGATCTGG CACGCGACAA chrI:182351-182744 + 35 1.06e-07 CGACAACTGC AGGACTCGAACCTGCGCGGGC AAAGCCCAAA chrXII:426936-427448 - 31 1.06e-07 CTCCGCGACG GGGAATTGAACCCCGATCTGG CACGCGACAA chrIX:323949-324675 + 51 1.06e-07 CTCCGCGACG GGGAATTGAACCCCGATCTGG CACGCGACAA chrIV:980776-981224 + 34 1.06e-07 CGACAACTGC AGGACTCGAACCTGCGCGGGC AAAGCCCAAA chrXVI:55783-56536 + 70 1.15e-07 TGAAACGGAC AGGAATTGAACCTGCAACCCT TCGATTGCAA chrXV:339923-340710 + 43 1.25e-07 CTTCCCCGCC AGGACTTGAACCTGGAATCTT CTGGTTCGTA chrXII:374217-374673 - 2 1.25e-07 CTTCCCCGCC AGGACTTGAACCTGGAATCTT C chrVI:210408-210890 + 30 2.88e-07 TCTCCCGGGG GCGAGTCGAACGCCCGATCTC AAGATTTCGT chrXII:784173-784681 - 46 3.09e-07 CGTCACAGAC AGGATTCGAACCTGCGCAGGT AAAACCCAAT chrXV:274489-275010 - 44 3.09e-07 CGTCACAGAC AGGATTCGAACCTGCGCAGGT AAAACCCAAT chrII:9387-9873 - 56 6.50e-07 TGAAGGATGC GAGGTTCGAACTCGCGCGGAC AACCGTCCAA chrXV:709989-710486 - 55 8.36e-07 TAGCGCCGCT CGGTTTCGATCCGAGGACATC AGGGTTATGA chrIII:227765-228202 - 79 8.89e-07 C AGGATTTGAACCAGCGCGGGC AGAGCCCAAG chrV:288130-288812 + 32 8.89e-07 CGACACCAGC AGGATTTGAACCAGCGCGGGC AGAGCCCAAC chrVII:857254-857621 + 1 1.13e-06 . GAGATTCGAACTCTTGCATCT TACGATACCT chrXIII:504647-505259 - 75 1.13e-06 GCTAA GAGATTCGAACTCTTGCATCT TACGATACCT chrVII:205007-206295 - 3 1.13e-06 TGGTTGCTAA GAGATTCGAACTCTTGCATCT TA chrXVI:303047-304366 - 6 2.43e-06 TCAATTTCTT CGGTTTCGAAGTCCCAACCTG GGAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRHTCGAACCSVBGACCTY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123379-123746 3.1e-14 74_[+1]_5 chrXIV:631515-632184 3.1e-14 56_[+1]_23 chrVII:794119-794745 1.7e-11 76_[-1]_3 chrV:311755-312315 1.7e-11 47_[+1]_32 chrXII:214626-215162 1.7e-11 48_[+1]_31 chrXV:853968-854401 1.7e-11 62_[+1]_17 chrI:166046-166553 1.7e-11 59_[-1]_20 chrXIII:320938-321327 1.8e-10 74_[+1]_5 chrXII:656665-657173 1.8e-10 74_[+1]_5 chrXIII:480346-480892 1.8e-10 61_[+1]_18 chrVI:226483-226910 1.8e-10 51_[+1]_28 chrX:197106-197206 1.8e-10 18_[+1]_61 chrXI:202861-203297 1.8e-10 11_[-1]_68 chrX:414803-414903 1.8e-10 21_[-1]_58 chrVII:122019-122695 1.8e-10 3_[-1]_76 chrV:135173-135690 1.8e-10 53_[+1]_26 chrXIV:569678-570025 2.8e-10 75_[+1]_4 chrVIII:388665-389218 3.3e-10 11_[+1]_68 chrXIV:546956-547443 3.3e-10 16_[-1]_63 chrVII:779431-779978 5.9e-10 2_[-1]_77 chrIX:370213-370774 8.9e-10 14_[-1]_65 chrIX:197347-197974 8.9e-10 22_[-1]_57 chrII:644982-645446 8.9e-10 43_[-1]_36 chrVIII:134064-134654 1e-09 52_[-1]_27 chrIII:168066-168636 1e-09 9_[+1]_70 chrXI:578752-579352 1.3e-09 27_[-1]_52 chrVII:114939-116138 1.3e-09 64_[-1]_15 chrIV:434003-434516 2.2e-09 64_[+1]_15 chrIX:174707-175380 2.2e-09 79_[-1] chrXV:353768-354306 2.2e-09 63_[+1]_16 chrXV:113480-114205 2.2e-09 51_[-1]_28 chrIX:325515-326056 2.2e-09 54_[-1]_25 chrV:130772-131443 2.5e-09 34_[+1]_45 chrX:355128-355228 3.3e-09 35_[-1]_44 chrXI:162222-162766 3.3e-09 52_[+1]_27 chrVII:405301-405778 3.3e-09 21_[-1]_58 chrIV:488459-489201 3.6e-09 26_[+1]_53 chrXV:593948-594781 3.6e-09 49_[+1]_30 chrVI:162007-162486 3.6e-09 71_[-1]_8 chrXVI:572052-572580 3.6e-09 42_[-1]_37 chrXIII:183675-184164 3.6e-09 38_[+1]_41 chrXIII:420303-420905 4.6e-09 43_[+1]_36 chrXV:663320-664327 4.6e-09 48_[+1]_31 chrXIII:372134-372719 4.6e-09 78_[+1]_1 chrVII:412084-412585 4.6e-09 19_[+1]_60 chrXIII:586407-586904 4.6e-09 40_[+1]_39 chrIV:1175597-1176116 1.5e-08 64_[-1]_15 chrX:390826-390926 1.5e-08 43_[+1]_36 chrXVI:622291-622855 2.3e-08 26_[+1]_53 chrXIV:374753-375097 2.3e-08 53_[-1]_26 chrVIII:358258-358802 2.3e-08 7_[+1]_72 chrX:617770-617870 5.8e-08 77_[-1]_2 chrXIV:632420-632906 8.2e-08 28_[-1]_51 chrVII:730924-731436 8.2e-08 49_[-1]_30 chrXV:487182-487731 8.2e-08 75_[-1]_4 chrXIII:463203-464066 1.1e-07 10_[-1]_69 chrVII:531470-531779 1.1e-07 76_[-1]_3 chrII:226891-227396 1.1e-07 32_[-1]_47 chrX:541341-541441 1.1e-07 14_[-1]_65 chrI:182351-182744 1.1e-07 34_[+1]_45 chrXII:426936-427448 1.1e-07 30_[-1]_49 chrIX:323949-324675 1.1e-07 50_[+1]_29 chrIV:980776-981224 1.1e-07 33_[+1]_46 chrXVI:55783-56536 1.1e-07 69_[+1]_10 chrXV:339923-340710 1.2e-07 42_[+1]_37 chrXII:374217-374673 1.2e-07 1_[-1]_78 chrVI:210408-210890 2.9e-07 29_[+1]_50 chrXII:784173-784681 3.1e-07 45_[-1]_34 chrXV:274489-275010 3.1e-07 43_[-1]_36 chrII:9387-9873 6.5e-07 55_[-1]_24 chrXV:709989-710486 8.4e-07 54_[-1]_25 chrIII:227765-228202 8.9e-07 78_[-1]_1 chrV:288130-288812 8.9e-07 31_[+1]_48 chrVII:857254-857621 1.1e-06 [+1]_79 chrXIII:504647-505259 1.1e-06 74_[-1]_5 chrVII:205007-206295 1.1e-06 2_[-1]_77 chrXVI:303047-304366 2.4e-06 5_[-1]_74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRHTCGAACCSVBGACCTY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGGRHTCGAACCSVBGACCTY width=21 seqs=77 chrIII:123379-123746 ( 75) GGGACTCGAACCCGGGACCTC 1 chrXIV:631515-632184 ( 57) GGGACTCGAACCCGGGACCTC 1 chrVII:794119-794745 ( 77) CGGAATCGAACCGATGACCTC 1 chrV:311755-312315 ( 48) CGGAATCGAACCGATGACCTC 1 chrXII:214626-215162 ( 49) CGGAATCGAACCGATGACCTC 1 chrXV:853968-854401 ( 63) CGGAATCGAACCGATGACCTC 1 chrI:166046-166553 ( 60) CGGAATCGAACCGATGACCTC 1 chrXIII:320938-321327 ( 75) CGGAATCGAACCGGAGACCTC 1 chrXII:656665-657173 ( 75) CGGAATCGAACCGGAGACCTC 1 chrXIII:480346-480892 ( 62) GGGGCTCGAACCCCTAACCTT 1 chrVI:226483-226910 ( 52) GGGGCTCGAACCCCTAACCTT 1 chrX:197106-197206 ( 19) CGGAATCGAACCGGAGACCTC 1 chrXI:202861-203297 ( 12) GGGGCTCGAACCCCTAACCTT 1 chrX:414803-414903 ( 22) GGGGCTCGAACCCCTAACCTT 1 chrVII:122019-122695 ( 4) GGGGCTCGAACCCCTAACCTT 1 chrV:135173-135690 ( 54) GGGGCTCGAACCCCTAACCTT 1 chrXIV:569678-570025 ( 76) CGGGATCGAACCGCTGATCCC 1 chrVIII:388665-389218 ( 12) GGGAATTGAACCCAGGGCCTC 1 chrXIV:546956-547443 ( 17) GGGAATTGAACCCAGGGCCTC 1 chrVII:779431-779978 ( 3) GAGAATCGAACCCGTGTCCCC 1 chrIX:370213-370774 ( 15) GGGAGTCGAACCCCGGTCTCC 1 chrIX:197347-197974 ( 23) GGGAGTCGAACCCCGGTCTCC 1 chrII:644982-645446 ( 44) GGGAGTCGAACCCCGGTCTCC 1 chrVIII:134064-134654 ( 53) CGGATTCGAACCGGGGTTGTC 1 chrIII:168066-168636 ( 10) CGGATTCGAACCGGGGTTGTC 1 chrXI:578752-579352 ( 28) GGGGCTCGAACCCCTGACATT 1 chrVII:114939-116138 ( 65) GGGGCTCGAACCCCTGACATT 1 chrIV:434003-434516 ( 65) CGGATTTGAACCGATGATCTC 1 chrIX:174707-175380 ( 80) CGGATTTGAACCGATGATCTC 1 chrXV:353768-354306 ( 64) CGGATTTGAACCGATGATCTC 1 chrXV:113480-114205 ( 52) CGGATTTGAACCGATGATCTC 1 chrIX:325515-326056 ( 55) CGGATTTGAACCGATGATCTC 1 chrV:130772-131443 ( 35) CGGATTCGAACCGGGGTTGTT 1 chrX:355128-355228 ( 36) GGGGGTCGAACCCATAATCTT 1 chrXI:162222-162766 ( 53) GGGGGTCGAACCCATAATCTT 1 chrVII:405301-405778 ( 22) GGGGGTCGAACCCATAATCTT 1 chrIV:488459-489201 ( 27) GAGGTTCGAACTCGGGATCTT 1 chrXV:593948-594781 ( 50) GGGAATCGAACCCGGGCCTCA 1 chrVI:162007-162486 ( 72) CGGAATCGAACCGGGGGCCCA 1 chrXVI:572052-572580 ( 43) CGGAATCGAACCGGGGGCCCA 1 chrXIII:183675-184164 ( 39) CGGAATCGAACCGGGGGCCCA 1 chrXIII:420303-420905 ( 44) CAGGATCGAACTGGGGACGTT 1 chrXV:663320-664327 ( 49) CAGGATCGAACTGGGGACGTT 1 chrXIII:372134-372719 ( 79) CAGGATCGAACTGGGGACGTT 1 chrVII:412084-412585 ( 20) CAGGATCGAACTGGGGACGTT 1 chrXIII:586407-586904 ( 41) CAGGATCGAACTGGGGACGTT 1 chrIV:1175597-1176116 ( 65) GAGGTTCGAACTCTCGACCTT 1 chrX:390826-390926 ( 44) GAGGTTCGAACTCTCGACCTT 1 chrXVI:622291-622855 ( 27) GTGGATCGAACACAGGACCTC 1 chrXIV:374753-375097 ( 54) GTGGATCGAACACAGGACCTC 1 chrVIII:358258-358802 ( 8) GTGGATCGAACACAGGACCTC 1 chrX:617770-617870 ( 78) GGGATTCGAACCCTTGCATCC 1 chrXIV:632420-632906 ( 29) GAGGGTTGAACTCACGATCTT 1 chrVII:730924-731436 ( 50) GAGGGTTGAACTCACGATCTT 1 chrXV:487182-487731 ( 76) GAGGGTTGAACTCACGATCTT 1 chrXIII:463203-464066 ( 11) GGGAATTGAACCCCGATCTGG 1 chrVII:531470-531779 ( 77) GGGAATTGAACCCCGATCTGG 1 chrII:226891-227396 ( 33) AGGACTCGAACCTGCGCGGGC 1 chrX:541341-541441 ( 15) GGGAATTGAACCCCGATCTGG 1 chrI:182351-182744 ( 35) AGGACTCGAACCTGCGCGGGC 1 chrXII:426936-427448 ( 31) GGGAATTGAACCCCGATCTGG 1 chrIX:323949-324675 ( 51) GGGAATTGAACCCCGATCTGG 1 chrIV:980776-981224 ( 34) AGGACTCGAACCTGCGCGGGC 1 chrXVI:55783-56536 ( 70) AGGAATTGAACCTGCAACCCT 1 chrXV:339923-340710 ( 43) AGGACTTGAACCTGGAATCTT 1 chrXII:374217-374673 ( 2) AGGACTTGAACCTGGAATCTT 1 chrVI:210408-210890 ( 30) GCGAGTCGAACGCCCGATCTC 1 chrXII:784173-784681 ( 46) AGGATTCGAACCTGCGCAGGT 1 chrXV:274489-275010 ( 44) AGGATTCGAACCTGCGCAGGT 1 chrII:9387-9873 ( 56) GAGGTTCGAACTCGCGCGGAC 1 chrXV:709989-710486 ( 55) CGGTTTCGATCCGAGGACATC 1 chrIII:227765-228202 ( 79) AGGATTTGAACCAGCGCGGGC 1 chrV:288130-288812 ( 32) AGGATTTGAACCAGCGCGGGC 1 chrVII:857254-857621 ( 1) GAGATTCGAACTCTTGCATCT 1 chrXIII:504647-505259 ( 75) GAGATTCGAACTCTTGCATCT 1 chrVII:205007-206295 ( 3) GAGATTCGAACTCTTGCATCT 1 chrXVI:303047-304366 ( 6) CGGTTTCGAAGTCCCAACCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRHTCGAACCSVBGACCTY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.7323 E= 1.0e-226 -130 96 153 -1291 -62 -379 204 -304 -1291 -1291 247 -1291 96 -1291 96 -362 28 11 -47 -16 -1291 -1291 -1291 164 -1291 204 -1291 -30 -1291 -1291 247 -1291 164 -1291 -1291 -1291 162 -1291 -1291 -462 -1291 245 -379 -1291 -304 204 -379 -62 -362 156 91 -162 -16 46 111 -204 -304 21 116 13 -45 -1291 209 -1291 93 -9 -147 -104 -204 173 -121 -37 -304 170 21 -92 -462 1 -21 102 -262 138 -121 33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRHTCGAACCSVBGACCTY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 77 E= 1.0e-226 0.129870 0.350649 0.519481 0.000000 0.207792 0.012987 0.740260 0.038961 0.000000 0.000000 1.000000 0.000000 0.623377 0.000000 0.350649 0.025974 0.389610 0.194805 0.129870 0.285714 0.000000 0.000000 0.000000 1.000000 0.000000 0.740260 0.000000 0.259740 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.987013 0.000000 0.000000 0.012987 0.000000 0.987013 0.012987 0.000000 0.038961 0.740260 0.012987 0.207792 0.025974 0.532468 0.337662 0.103896 0.285714 0.246753 0.389610 0.077922 0.038961 0.207792 0.402597 0.350649 0.233766 0.000000 0.766234 0.000000 0.610390 0.168831 0.064935 0.155844 0.077922 0.597403 0.077922 0.246753 0.038961 0.584416 0.207792 0.168831 0.012987 0.181818 0.155844 0.649351 0.051948 0.467532 0.077922 0.402597 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGGRHTCGAACCSVBGACCTY MEME-1 regular expression -------------------------------------------------------------------------------- [GC][GA]G[AG][AT]T[CT]GAAC[CT][CG][GAC][GTC][GA]A[CT][CG]T[CT] -------------------------------------------------------------------------------- Time 350.52 secs. ******************************************************************************** ******************************************************************************** MOTIF DTGGYCBAGTKGKTWAAGSS MEME-2 width = 20 sites = 47 llr = 780 E-value = 4.0e-115 ******************************************************************************** -------------------------------------------------------------------------------- Motif DTGGYCBAGTKGKTWAAGSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3:1:::1a1::::2576::: pos.-specific C ::::763:::2::1::1:56 probability G 4:9a:12:9:5a5::32844 matrix T 3a::323::a3:574:121: bits 2.5 * * 2.2 * * 2.0 * * * 1.7 *** ** * * Relative 1.5 *** *** * * Entropy 1.2 **** *** * * * (23.9 bits) 1.0 ***** *** ** * *** 0.7 ***** *** ** * *** 0.5 ****** ********* *** 0.2 ******************** 0.0 -------------------- Multilevel GTGGCCTAGTGGGTAAAGCC consensus T TTC T TATG GG sequence A G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGGYCBAGTKGKTWAAGSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chrXII:592116-593153 - 10 1.62e-10 CAATGGGAGT TTGGCCGAGTGGTTTAAGGC GTCAGATTT chrXII:731913-732254 + 63 1.62e-10 CAATGGGAGT TTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrX:617770-617870 + 14 1.62e-10 CAATGGGAGT TTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXIV:602105-602535 + 48 1.95e-10 CAATGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIII:227765-228202 + 15 3.22e-10 AAATGGCACT ATGGCCGAGTGGTTAAGGCG AGAGACTCGA chrI:182351-182744 - 81 3.22e-10 . TTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrV:288130-288812 - 78 3.22e-10 ACT ATGGCCGAGTGGTTAAGGCG ACAGACTTGA chrIV:980776-981224 - 80 3.22e-10 C TTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXVI:810446-810919 + 50 1.25e-09 TTGCGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrVII:730924-731436 + 13 1.25e-09 AAAAGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrIII:127542-127899 + 52 1.25e-09 AAATGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXV:487182-487731 + 39 1.25e-09 GTTAGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrII:9387-9873 + 9 1.42e-09 GTGGAGGG TTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrX:197106-197206 - 56 1.86e-09 ATTAGGGCGT GTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrVI:204773-205210 - 30 1.86e-09 GTTCGGGCGT GTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrIX:174707-175380 + 44 2.11e-09 ACGAGCTTCT ATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXV:113480-114205 + 16 2.11e-09 TTTAGCTTCT ATGGCCAAGTTGGTAAGGCG CCACACTAGT chrIX:325515-326056 + 19 2.11e-09 ACGAGCTTCT ATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXI:379156-380225 + 46 2.71e-09 AATAGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrV:438157-439246 + 55 2.71e-09 ATTAGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXI:308021-308420 - 22 2.71e-09 AAGTGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:412084-412585 - 58 2.71e-09 AACTGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:586407-586904 - 79 2.71e-09 TC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:73618-74232 - 2 2.71e-09 AAGTGGTTTC GTGGTCTAGTCGGTTATGGC A chrVII:794119-794745 + 41 5.48e-09 TTGCGGGCAC ATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrI:166046-166553 + 24 5.48e-09 AGTTGGGCAC ATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrVII:857254-857621 - 79 2.26e-08 GT TTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrI:180906-181445 + 22 2.26e-08 AAGTGGTTGT TTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrVII:114939-116138 + 6 2.70e-08 CCTTG TTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrVII:845370-845899 + 71 3.83e-08 ACAAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrX:531496-531596 + 57 3.83e-08 GTGAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVI:162007-162486 + 38 3.83e-08 ACAAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXVI:572052-572580 + 9 3.83e-08 TCGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXIII:183675-184164 - 74 3.83e-08 CGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrIV:488459-489201 - 65 7.29e-08 TTCCGGTCCA ATGGTCCAGTGGTTCAAGAC GTCGCCTTTA chrII:326564-327203 - 7 7.29e-08 TCCGGGTCCA ATGGTCCAGTGGTTCAAGAC GTCGCC chrIV:1352341-1352713 - 36 7.87e-08 AATAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrIX:300011-300598 - 21 7.87e-08 AATAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrXV:300732-301457 + 59 1.14e-07 GATCGGGCGT GTGGTCTAGTGGTATGATTC TCGCTTTGGG chrVIII:388665-389218 - 79 1.14e-07 GT GTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXIII:195887-196411 - 46 1.14e-07 ACAAGGGCGT GTGGTCTAGTGGTATGATTC TCGCTTTGGG chrIV:1175597-1176116 + 29 1.31e-07 CAAAGCTTCA GTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrIV:884171-884635 + 14 1.31e-07 AAATGCTCGT GTAGCTCAGTGGTTAGAGCT TCGTGCTTAT chrX:390826-390926 - 81 1.31e-07 . GTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrXVI:559918-560673 - 19 1.40e-07 TTGAGCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVIII:358258-358802 - 64 1.40e-07 GTAAGCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXV:339923-340710 - 80 1.71e-07 C GTGGCCCAATGGTCACGGCG TCTGGCTACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGGYCBAGTKGKTWAAGSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:592116-593153 1.6e-10 9_[-2]_71 chrXII:731913-732254 1.6e-10 62_[+2]_18 chrX:617770-617870 1.6e-10 13_[+2]_67 chrXIV:602105-602535 1.9e-10 47_[+2]_33 chrIII:227765-228202 3.2e-10 14_[+2]_66 chrI:182351-182744 3.2e-10 80_[-2] chrV:288130-288812 3.2e-10 77_[-2]_3 chrIV:980776-981224 3.2e-10 79_[-2]_1 chrXVI:810446-810919 1.2e-09 49_[+2]_31 chrVII:730924-731436 1.2e-09 12_[+2]_68 chrIII:127542-127899 1.2e-09 51_[+2]_29 chrXV:487182-487731 1.2e-09 38_[+2]_42 chrII:9387-9873 1.4e-09 8_[+2]_72 chrX:197106-197206 1.9e-09 55_[-2]_25 chrVI:204773-205210 1.9e-09 29_[-2]_51 chrIX:174707-175380 2.1e-09 43_[+2]_37 chrXV:113480-114205 2.1e-09 15_[+2]_65 chrIX:325515-326056 2.1e-09 18_[+2]_62 chrXI:379156-380225 2.7e-09 45_[+2]_35 chrV:438157-439246 2.7e-09 54_[+2]_26 chrXI:308021-308420 2.7e-09 21_[-2]_59 chrVII:412084-412585 2.7e-09 57_[-2]_23 chrXIII:586407-586904 2.7e-09 78_[-2]_2 chrVII:73618-74232 2.7e-09 1_[-2]_79 chrVII:794119-794745 5.5e-09 40_[+2]_40 chrI:166046-166553 5.5e-09 23_[+2]_57 chrVII:857254-857621 2.3e-08 78_[-2]_2 chrI:180906-181445 2.3e-08 21_[+2]_59 chrVII:114939-116138 2.7e-08 5_[+2]_75 chrVII:845370-845899 3.8e-08 70_[+2]_10 chrX:531496-531596 3.8e-08 56_[+2]_24 chrVI:162007-162486 3.8e-08 37_[+2]_43 chrXVI:572052-572580 3.8e-08 8_[+2]_72 chrXIII:183675-184164 3.8e-08 73_[-2]_7 chrIV:488459-489201 7.3e-08 64_[-2]_16 chrII:326564-327203 7.3e-08 6_[-2]_74 chrIV:1352341-1352713 7.9e-08 35_[-2]_45 chrIX:300011-300598 7.9e-08 20_[-2]_60 chrXV:300732-301457 1.1e-07 58_[+2]_22 chrVIII:388665-389218 1.1e-07 78_[-2]_2 chrXIII:195887-196411 1.1e-07 45_[-2]_35 chrIV:1175597-1176116 1.3e-07 28_[+2]_52 chrIV:884171-884635 1.3e-07 13_[+2]_67 chrX:390826-390926 1.3e-07 80_[-2] chrXVI:559918-560673 1.4e-07 18_[-2]_62 chrVIII:358258-358802 1.4e-07 63_[-2]_17 chrXV:339923-340710 1.7e-07 79_[-2]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGGYCBAGTKGKTWAAGSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DTGGYCBAGTKGKTWAAGSS width=20 seqs=47 chrXII:592116-593153 ( 10) TTGGCCGAGTGGTTTAAGGC 1 chrXII:731913-732254 ( 63) TTGGCCGAGTGGTTTAAGGC 1 chrX:617770-617870 ( 14) TTGGCCGAGTGGTTTAAGGC 1 chrXIV:602105-602535 ( 48) TTGGCCCAGTTGGTTAAGGC 1 chrIII:227765-228202 ( 15) ATGGCCGAGTGGTTAAGGCG 1 chrI:182351-182744 ( 81) TTGGCCGAGTGGTTAAGGCG 1 chrV:288130-288812 ( 78) ATGGCCGAGTGGTTAAGGCG 1 chrIV:980776-981224 ( 80) TTGGCCGAGTGGTTAAGGCG 1 chrXVI:810446-810919 ( 50) ATGGCCAAGTTGGTTAAGGC 1 chrVII:730924-731436 ( 13) ATGGCCAAGTTGGTTAAGGC 1 chrIII:127542-127899 ( 52) ATGGCCAAGTTGGTTAAGGC 1 chrXV:487182-487731 ( 39) ATGGCCAAGTTGGTTAAGGC 1 chrII:9387-9873 ( 9) TTGGCCGAGTGGTCTAAGGC 1 chrX:197106-197206 ( 56) GTGGCGTAGTCGGTAGCGCG 1 chrVI:204773-205210 ( 30) GTGGCGTAGTCGGTAGCGCG 1 chrIX:174707-175380 ( 44) ATGGCCAAGTTGGTAAGGCG 1 chrXV:113480-114205 ( 16) ATGGCCAAGTTGGTAAGGCG 1 chrIX:325515-326056 ( 19) ATGGCCAAGTTGGTAAGGCG 1 chrXI:379156-380225 ( 46) GTGGTCTAGTCGGTTATGGC 1 chrV:438157-439246 ( 55) GTGGTCTAGTCGGTTATGGC 1 chrXI:308021-308420 ( 22) GTGGTCTAGTCGGTTATGGC 1 chrVII:412084-412585 ( 58) GTGGTCTAGTCGGTTATGGC 1 chrXIII:586407-586904 ( 79) GTGGTCTAGTCGGTTATGGC 1 chrVII:73618-74232 ( 2) GTGGTCTAGTCGGTTATGGC 1 chrVII:794119-794745 ( 41) ATGGCGCAGTTGGTAGCGCG 1 chrI:166046-166553 ( 24) ATGGCGCAGTTGGTAGCGCG 1 chrVII:857254-857621 ( 79) TTGGCCGAGCGGTCTAAGGC 1 chrI:180906-181445 ( 22) TTGGCCGAGCGGTCTAAGGC 1 chrVII:114939-116138 ( 6) TTAGCTCAGTTGGTAGAGCG 1 chrVII:845370-845899 ( 71) GTGGTTTAGTGGTAAAATCC 1 chrX:531496-531596 ( 57) GTGGTTTAGTGGTAAAATCC 1 chrVI:162007-162486 ( 38) GTGGTTTAGTGGTAAAATCC 1 chrXVI:572052-572580 ( 9) GTGGTTTAGTGGTAAAATCC 1 chrXIII:183675-184164 ( 74) GTGGTTTAGTGGTAAAATCC 1 chrIV:488459-489201 ( 65) ATGGTCCAGTGGTTCAAGAC 1 chrII:326564-327203 ( 7) ATGGTCCAGTGGTTCAAGAC 1 chrIV:1352341-1352713 ( 36) TTGGCGCAATCGGTAGCGCG 1 chrIX:300011-300598 ( 21) TTGGCGCAATCGGTAGCGCG 1 chrXV:300732-301457 ( 59) GTGGTCTAGTGGTATGATTC 1 chrVIII:388665-389218 ( 79) GTGGTCTAGTGGTATGATTC 1 chrXIII:195887-196411 ( 46) GTGGTCTAGTGGTATGATTC 1 chrIV:1175597-1176116 ( 29) GTAGCTCAGTAGGAAGAGCG 1 chrIV:884171-884635 ( 14) GTAGCTCAGTGGTTAGAGCT 1 chrX:390826-390926 ( 81) GTAGCTCAGTAGGAAGAGCG 1 chrXVI:559918-560673 ( 19) TTAGCTCAGTTGGGAGAGCG 1 chrVIII:358258-358802 ( 64) TTAGCTCAGTTGGGAGAGCG 1 chrXV:339923-340710 ( 80) GTGGCCCAATGGTCACGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGGYCBAGTKGKTWAAGSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 48600 bayes= 10.4383 E= 4.0e-115 -21 -1220 124 -10 -1220 -1220 -1220 164 -133 -1220 228 -1220 -1220 -1220 247 -1220 -1220 187 -1220 9 -1220 183 -50 -45 -110 73 24 9 164 -1220 -1220 -1220 -232 -1220 238 -1220 -1220 -208 -1220 158 -291 24 138 -21 -1220 -1220 247 -1220 -1220 -1220 156 55 -59 -108 -208 104 73 -208 -1220 41 104 -308 83 -1220 84 -50 -8 -133 -1220 -1220 220 -91 -291 156 101 -232 -1220 167 117 -391 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGGYCBAGTKGKTWAAGSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 47 E= 4.0e-115 0.276596 0.000000 0.425532 0.297872 0.000000 0.000000 0.000000 1.000000 0.127660 0.000000 0.872340 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.659574 0.000000 0.340426 0.000000 0.638298 0.127660 0.234043 0.148936 0.297872 0.212766 0.340426 1.000000 0.000000 0.000000 0.000000 0.063830 0.000000 0.936170 0.000000 0.000000 0.042553 0.000000 0.957447 0.042553 0.212766 0.468085 0.276596 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.531915 0.468085 0.212766 0.085106 0.042553 0.659574 0.531915 0.042553 0.000000 0.425532 0.659574 0.021277 0.319149 0.000000 0.574468 0.127660 0.170213 0.127660 0.000000 0.000000 0.829787 0.170213 0.042553 0.531915 0.361702 0.063830 0.000000 0.574468 0.404255 0.021277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGGYCBAGTKGKTWAAGSS MEME-2 regular expression -------------------------------------------------------------------------------- [GTA]TGG[CT][CT][TCG]AGT[GTC]G[GT][TA][AT][AG]AG[CG][CG] -------------------------------------------------------------------------------- Time 669.69 secs. ******************************************************************************** ******************************************************************************** MOTIF ARWRAAARAADAARAAAAARM MEME-3 width = 21 sites = 83 llr = 883 E-value = 2.8e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARWRAAARAADAARAAAAARM MEME-3 Description -------------------------------------------------------------------------------- Simplified A 944477858846867897866 pos.-specific C :11:1211:1:11::1:::13 probability G 152611142123:4211:231 matrix T ::3:1:::::3:1:1::3::: bits 2.5 2.2 2.0 1.7 Relative 1.5 Entropy 1.2 * * (15.4 bits) 1.0 * * * * * * 0.7 ** * ***** ** ** * * 0.5 ** ******* ********** 0.2 ** ****************** 0.0 --------------------- Multilevel AGAGAAAAAAAAAAAAAAAAA consensus ATA G TG GG T GC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARWRAAARAADAARAAAAARM MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIV:519563-520181 - 78 1.87e-08 AA AAAAAAAAAAAAAAAAAAAAA CATTACTTGG chrXV:254533-255121 + 35 2.77e-08 GCATTGTTTC AAAAAAAAAATAAAAAAAAAA GGGAAGAAAT chrVIII:214150-214337 - 62 6.82e-08 CCAGATTTCG AATAAAAAAAAAAAAAAAAGC TATTCATGGT chrIX:197347-197974 - 53 6.82e-08 AGTCCCTAAA AAAAAAAGAATAAAAAATAAC TCCGAAGCGG chrIV:1488536-1490375 - 32 6.82e-08 CTTTCCTTGA AGGGACCAAAGAAGGAAAAAA AATATGTTGG chrXVI:372802-373323 - 55 1.12e-07 ATACAGAAAA AGTGAGAAAGAAAGAAAAAGA AACCACTAAT chrVII:363937-364445 - 2 1.31e-07 GAACCTATAT AACGAAAAAAAAAAAAATGAA A chrXII:1028157-1028469 - 73 1.31e-07 TTAAGAC AAGGAAGAAAGAAGGAAAAAA GGTAGGACAT chrXIII:605624-606083 + 45 1.78e-07 CACCGTTCCG AAGAAAAAAATAAAAAAAAAG GGCCGACGGA chrVIII:466787-467616 + 39 3.68e-07 AGTGAGAAAA AGAGCAAAAGGGAGAAAAGAA ATTGTTAGAA chrIV:1031888-1032696 + 14 4.22e-07 ACTTGTAAAT AGCGAACAAATAAAGAAAACA ATCTGCTACC chrXI:518900-519504 + 36 5.52e-07 TCGTGCGGAA AAAGAAAAAAGCAGACAAAAC AAAATTTTTC chrXII:585199-585813 - 62 5.52e-07 CAAGGAAGCA AATAAACAAATAAGGAAAAAA CAACCGGCAA chrVII:773928-774534 - 40 5.52e-07 TCAGGGCAGG AAGGGGAGAAGAAAAAAAAAG CTCTTTTACT chrV:504661-505256 - 53 5.52e-07 AATTGAAAAG AAGGAAAGGAAAAAAAGTAAA ATTATATAAC chrXV:1003865-1005205 - 1 6.28e-07 AATCAAGCCA AGCGAGAACAGAAAAAAAAAA chrXV:964706-966674 - 66 6.28e-07 GGTCTAAATG ACGGAAAGAAACAGAAATAGC ATAACGAGAG chrVII:920526-921244 + 76 9.19e-07 TTAAATCGCT AATGAAAAAAAAAAACAAACC TTTG chrXIV:715819-716680 + 16 1.04e-06 ACAACAACAC AGAGTAAGAAAAAGCAAAAGA TTTATCTCTT chrIV:1354459-1355598 - 17 1.32e-06 AATTGCAAGA AGAAGAAAGAGAAAGAAAGGA TCAATACGTC chrVI:199278-199636 + 57 1.32e-06 CTAGATCTGG AGTGACCAAAAAAAAAATACC CAGCGTAAGG chrVII:1003917-1004415 + 23 1.32e-06 GAAGGGAAAA AAAGAAAGGAGAAACAATAGC AGCATAAATC chrXII:86850-87463 + 78 1.32e-06 CATAAAGGAA AGGGAAAGAGGACAGGAAAGC AA chrXIV:88644-89933 - 79 1.48e-06 G AGAAAAAAAAAAAAGAAAATA AAGGAAAATG chrII:143135-144521 + 79 1.66e-06 GGAAAGACAA CATGAACGAAAAAAAAAAAAC A chrIX:394540-395139 + 60 1.66e-06 TTTCTTGTTA AGAAAACAGAAGAAAAAAACC TTAATTTGAA chrVII:316506-317422 - 65 1.66e-06 AGTCATTGTT AGCGAAAAAAGGCGGGATAGA ACTTATTTTA chrXV:438466-439088 - 51 1.86e-06 CTCGTTTTAT AGTGGGGGAAAAAGAAAAGAA GAGGATGGTA chrX:620237-620337 - 43 1.86e-06 CTGTTTAAAG AGAGAGAGGGTGAGAAATGAA AGATTTCGAT chrIV:1239337-1240256 + 12 1.86e-06 ATGCTGCTGA AGAAGAAAAGGAAGAAGAAGC TAAGGAAGAA chrXV:796953-797762 - 75 2.09e-06 AAAGA AAAGGAAGCAGAAGAGAAAAA CTTAGAAAGG chrV:469259-469913 - 26 2.09e-06 AAAAAGAAAT AGAGACAGACAGAGAAACAGA GTTACACTTT chrV:51796-52966 + 75 2.09e-06 CATGGAAAGC AAAGTAAGAAAAAAGAATGAA GTGAA chrXVI:622291-622855 - 66 2.33e-06 CAGTTGGGAG AGCGCCAGACTGAAGAAAAAA CTTCGGTCAA chrXII:930604-931799 - 5 2.33e-06 GAATCTCCAG AAAGAGAAACGAAGAAGAAGA TGCC chrII:340714-341554 - 12 2.33e-06 GTGAACGCCA AAGGAAAAGATATAAAAAAAG TATGTCCCTT chrIV:322163-323658 + 17 2.33e-06 GAATTTCCAG AAAGAGAAACGAAGAAGAAGA CGCCAAGAAC chrXIV:374753-375097 + 16 2.60e-06 CAGTTGGGAG AGCGCCAGACTGAAGAAAAAC TTCGGTCAAG chrXV:619553-624745 - 79 2.60e-06 A AGAAAAAGAAGACGACATAAG CCATACCAAT chrIV:470148-471578 - 5 2.89e-06 GGGATATAAA AATGAAACAAAATAGAAAAAA TGTA chrXVI:770799-771096 + 64 2.89e-06 TTGTAAATAT AGCGACCGAATCAGGAAAAGG TCAACAACGA chrXIII:747682-748878 - 52 3.57e-06 AAAGATCCCT CACAAAAGAATAAGAAAAGAA AATTCTCAGA chrI:150547-152078 + 66 3.57e-06 GATTTGCAGA AATAAAAGAAATAAAAATAAA AATCTTATAA chrXII:214626-215162 + 18 3.57e-06 AAAATAAAGG AGAATAAAAGTAAAAAATAAA TGGACGCAAC chrVIII:467996-468206 - 22 3.95e-06 ACGTCAATAA AAAAGAAAAATATGGAAAAGA AAATATACTT chrIV:568432-569778 + 11 4.84e-06 AGCAGGTACA GGAGAAAGAGTAAATAATAGA AAGCAAGGTA chrVII:400868-401763 - 30 4.84e-06 ATTAAAGTAA AGTAAAAAAATTAAGAATAAA AAGAAAAATG chrV:237543-238952 - 1 4.84e-06 CGGGGACGGA ACGAACAGGAAACAAAAAAAA chrIV:541056-542017 + 65 4.84e-06 AGGATGAAGC ACAATAAGAATAAGAAAAAAG AAAATCAGCA chrXV:979689-980286 + 56 5.34e-06 CGCGACACAA AATGCAAGGAAAAATAATAAA TGTTACGTAG chrXV:251154-253668 - 16 5.34e-06 AAAAGTAAAG AAGGCCAAAAAAAGTAAAAGG AATGACGAGG chrVI:226483-226910 + 25 5.34e-06 TTTTTTTGTT AGAGAAAAAAAGAGATAAGCC CTGTAGGGGG chrVII:998039-998561 - 27 5.34e-06 ACCTTACAAA AATGAAAGGAAAAGTAGTAAA ATAACCTCAA chrII:376233-378017 + 63 5.34e-06 CAATGCATCC AAAGACAAGGGAAACAAAAAA ACAAAGTAAA chrXII:898071-899871 - 61 7.13e-06 TCAGCAAGCG AATACAAGGAAGAGACAAAGC ATATCTCGTA chrXVI:812459-812767 + 16 7.83e-06 TAGACAATCA AAGAACCAAAAGAGAGAAGAA GCGACCGAAA chrXII:784173-784681 - 76 8.59e-06 ATGG AGTAAAGAAATTAAAAAAAGC GTCACAGACA chrXVI:153476-156160 - 62 8.59e-06 AGTCCAATTG AGCGGAAAAATCCAAGAAAAC ATACCATTTT chrIII:127542-127899 + 28 1.03e-05 TTTCTGTAAA AGTGACACAAGATAAAATGAC TCCATGGCCA chrV:551773-552030 - 26 1.03e-05 TAAAAGTGAC AACGCAAGAAACAAAAACAAA TGCAATCTCA chrXII:852965-854084 + 35 1.23e-05 GGACCCCCGT AGGGTCACAAAGAAACAAAAA AATTTGAGAA chrVII:122019-122695 - 32 1.23e-05 CTCTGTTCAT ATAGAACAAAAAAAGAATAGC CCTGTAGGGG chrXI:313050-313666 + 76 1.46e-05 CATGAAGGCT AAAGGAAAAAAATAAAATGCC ATCT chrXIV:661344-661924 + 74 1.46e-05 ATGAAGCGGG AGGGAAGGGCAGAGGGAAAAG TTCGTA chrXIV:567885-568625 - 39 1.46e-05 AAAAAATACT AGAAAAGGAATAAGTGAAACA CCACGTTGAT chrXVI:209161-210597 - 75 1.46e-05 AAATG AAAAATAAAATGAAAAATAAA ATGAAAAAAA chrXIII:320938-321327 + 48 1.73e-05 GGGTTAGTTA GCCAAAAAAATAAAAAATGGA CGAGTCCGGA chrXV:259300-259882 - 51 1.73e-05 ACTACGGGCT AGAAAAAAAATAAAGGAAATG TTTCTTACAT chrXII:459659-460857 - 73 1.73e-05 AGAAGAA AGAGGAAAAGTGCAAGATGAA TAGCCAGTGC chrXIII:761007-764108 + 23 1.88e-05 TCACGAGGAG AGTAAACCAATATAAAAAGAA CAAATTCAAA chrVII:535457-535862 - 48 2.22e-05 CATAGAAAAC AGTAAAAGAAAATAAAAATAA CGTAATATTA chrVII:205007-206295 - 38 2.22e-05 TAGCTTGATC ACAGAACCAAAAAGATAAAAA ATAATGGTTG chrXIII:549534-551275 + 20 2.22e-05 CAATTGGGAA AGTGGCAGCAGCAGACAAAAC TTGTTCAGCT chrIV:218324-218851 + 35 2.40e-05 TTTGAAATTA AGAAAAAAAAAGTGTAGTAGA ACAGGAAAGT chrII:555858-558517 + 43 2.40e-05 ATGTACAAAG ACGAAGAGAGAGCAAAAAAAG CATGGTCAGC chrXIII:767797-768613 - 15 2.40e-05 GAAAAATATT GATGAAGCGAGGAAAAAAAAC GTCATAGGAA chrXIV:560454-561657 + 7 3.03e-05 TCGATA GGGGAGAAAGTACGTAAAAAA AATAATTTTG chrII:88928-89522 - 47 3.53e-05 GAGTTTTTCA CAAGAAGAGATGAAAAGAAAC CAAAGCATAT chrXII:687624-688350 + 45 3.53e-05 CAAAAATAAA AAAGAATGACGGCAAAAAAGC AAAAAGTGAC chrXI:158173-159671 - 70 4.41e-05 TAAAACCTGT TGTAGACGAATAAGAAATAAA TCTAACTGTT chrII:304161-305301 + 30 4.74e-05 TAATATTCAT GATAACAAGGTGAAAAATAGC ATCCTAATGA chrXVI:699932-700734 - 71 5.85e-05 CCTTTTTCG ACGAAGAAAAAGAAACGAGGC GGTCTCTTTT chrVII:958681-959065 + 60 5.85e-05 TTCTTGAGAT AGCACAAGCAAGAATAATAGG GCACGGTACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARWRAAARAADAARAAAAARM MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:519563-520181 1.9e-08 77_[-3]_2 chrXV:254533-255121 2.8e-08 34_[+3]_45 chrVIII:214150-214337 6.8e-08 61_[-3]_18 chrIX:197347-197974 6.8e-08 52_[-3]_27 chrIV:1488536-1490375 6.8e-08 31_[-3]_48 chrXVI:372802-373323 1.1e-07 54_[-3]_25 chrVII:363937-364445 1.3e-07 1_[-3]_78 chrXII:1028157-1028469 1.3e-07 72_[-3]_7 chrXIII:605624-606083 1.8e-07 44_[+3]_35 chrVIII:466787-467616 3.7e-07 38_[+3]_41 chrIV:1031888-1032696 4.2e-07 13_[+3]_66 chrXI:518900-519504 5.5e-07 35_[+3]_44 chrXII:585199-585813 5.5e-07 61_[-3]_18 chrVII:773928-774534 5.5e-07 39_[-3]_40 chrV:504661-505256 5.5e-07 52_[-3]_27 chrXV:1003865-1005205 6.3e-07 [-3]_79 chrXV:964706-966674 6.3e-07 65_[-3]_14 chrVII:920526-921244 9.2e-07 75_[+3]_4 chrXIV:715819-716680 1e-06 15_[+3]_64 chrIV:1354459-1355598 1.3e-06 16_[-3]_63 chrVI:199278-199636 1.3e-06 56_[+3]_23 chrVII:1003917-1004415 1.3e-06 22_[+3]_57 chrXII:86850-87463 1.3e-06 77_[+3]_2 chrXIV:88644-89933 1.5e-06 78_[-3]_1 chrII:143135-144521 1.7e-06 78_[+3]_1 chrIX:394540-395139 1.7e-06 59_[+3]_20 chrVII:316506-317422 1.7e-06 64_[-3]_15 chrXV:438466-439088 1.9e-06 50_[-3]_29 chrX:620237-620337 1.9e-06 42_[-3]_37 chrIV:1239337-1240256 1.9e-06 11_[+3]_68 chrXV:796953-797762 2.1e-06 74_[-3]_5 chrV:469259-469913 2.1e-06 25_[-3]_54 chrV:51796-52966 2.1e-06 74_[+3]_5 chrXVI:622291-622855 2.3e-06 65_[-3]_14 chrXII:930604-931799 2.3e-06 4_[-3]_75 chrII:340714-341554 2.3e-06 11_[-3]_68 chrIV:322163-323658 2.3e-06 16_[+3]_63 chrXIV:374753-375097 2.6e-06 15_[+3]_64 chrXV:619553-624745 2.6e-06 78_[-3]_1 chrIV:470148-471578 2.9e-06 4_[-3]_75 chrXVI:770799-771096 2.9e-06 63_[+3]_16 chrXIII:747682-748878 3.6e-06 51_[-3]_28 chrI:150547-152078 3.6e-06 65_[+3]_14 chrXII:214626-215162 3.6e-06 17_[+3]_62 chrVIII:467996-468206 4e-06 21_[-3]_58 chrIV:568432-569778 4.8e-06 10_[+3]_69 chrVII:400868-401763 4.8e-06 29_[-3]_50 chrV:237543-238952 4.8e-06 [-3]_79 chrIV:541056-542017 4.8e-06 64_[+3]_15 chrXV:979689-980286 5.3e-06 55_[+3]_24 chrXV:251154-253668 5.3e-06 15_[-3]_64 chrVI:226483-226910 5.3e-06 24_[+3]_55 chrVII:998039-998561 5.3e-06 26_[-3]_53 chrII:376233-378017 5.3e-06 62_[+3]_17 chrXII:898071-899871 7.1e-06 60_[-3]_19 chrXVI:812459-812767 7.8e-06 15_[+3]_64 chrXII:784173-784681 8.6e-06 75_[-3]_4 chrXVI:153476-156160 8.6e-06 61_[-3]_18 chrIII:127542-127899 1e-05 27_[+3]_52 chrV:551773-552030 1e-05 25_[-3]_54 chrXII:852965-854084 1.2e-05 34_[+3]_45 chrVII:122019-122695 1.2e-05 31_[-3]_48 chrXI:313050-313666 1.5e-05 75_[+3]_4 chrXIV:661344-661924 1.5e-05 73_[+3]_6 chrXIV:567885-568625 1.5e-05 38_[-3]_41 chrXVI:209161-210597 1.5e-05 74_[-3]_5 chrXIII:320938-321327 1.7e-05 47_[+3]_32 chrXV:259300-259882 1.7e-05 50_[-3]_29 chrXII:459659-460857 1.7e-05 72_[-3]_7 chrXIII:761007-764108 1.9e-05 22_[+3]_57 chrVII:535457-535862 2.2e-05 47_[-3]_32 chrVII:205007-206295 2.2e-05 37_[-3]_42 chrXIII:549534-551275 2.2e-05 19_[+3]_60 chrIV:218324-218851 2.4e-05 34_[+3]_45 chrII:555858-558517 2.4e-05 42_[+3]_37 chrXIII:767797-768613 2.4e-05 14_[-3]_65 chrXIV:560454-561657 3e-05 6_[+3]_73 chrII:88928-89522 3.5e-05 46_[-3]_33 chrXII:687624-688350 3.5e-05 44_[+3]_35 chrXI:158173-159671 4.4e-05 69_[-3]_10 chrII:304161-305301 4.7e-05 29_[+3]_50 chrXVI:699932-700734 5.9e-05 70_[-3]_9 chrVII:958681-959065 5.9e-05 59_[+3]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARWRAAARAADAARAAAAARM MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARWRAAARAADAARAAAAARM width=21 seqs=83 chrIV:519563-520181 ( 78) AAAAAAAAAAAAAAAAAAAAA 1 chrXV:254533-255121 ( 35) AAAAAAAAAATAAAAAAAAAA 1 chrVIII:214150-214337 ( 62) AATAAAAAAAAAAAAAAAAGC 1 chrIX:197347-197974 ( 53) AAAAAAAGAATAAAAAATAAC 1 chrIV:1488536-1490375 ( 32) AGGGACCAAAGAAGGAAAAAA 1 chrXVI:372802-373323 ( 55) AGTGAGAAAGAAAGAAAAAGA 1 chrVII:363937-364445 ( 2) AACGAAAAAAAAAAAAATGAA 1 chrXII:1028157-1028469 ( 73) AAGGAAGAAAGAAGGAAAAAA 1 chrXIII:605624-606083 ( 45) AAGAAAAAAATAAAAAAAAAG 1 chrVIII:466787-467616 ( 39) AGAGCAAAAGGGAGAAAAGAA 1 chrIV:1031888-1032696 ( 14) AGCGAACAAATAAAGAAAACA 1 chrXI:518900-519504 ( 36) AAAGAAAAAAGCAGACAAAAC 1 chrXII:585199-585813 ( 62) AATAAACAAATAAGGAAAAAA 1 chrVII:773928-774534 ( 40) AAGGGGAGAAGAAAAAAAAAG 1 chrV:504661-505256 ( 53) AAGGAAAGGAAAAAAAGTAAA 1 chrXV:1003865-1005205 ( 1) AGCGAGAACAGAAAAAAAAAA 1 chrXV:964706-966674 ( 66) ACGGAAAGAAACAGAAATAGC 1 chrVII:920526-921244 ( 76) AATGAAAAAAAAAAACAAACC 1 chrXIV:715819-716680 ( 16) AGAGTAAGAAAAAGCAAAAGA 1 chrIV:1354459-1355598 ( 17) AGAAGAAAGAGAAAGAAAGGA 1 chrVI:199278-199636 ( 57) AGTGACCAAAAAAAAAATACC 1 chrVII:1003917-1004415 ( 23) AAAGAAAGGAGAAACAATAGC 1 chrXII:86850-87463 ( 78) AGGGAAAGAGGACAGGAAAGC 1 chrXIV:88644-89933 ( 79) AGAAAAAAAAAAAAGAAAATA 1 chrII:143135-144521 ( 79) CATGAACGAAAAAAAAAAAAC 1 chrIX:394540-395139 ( 60) AGAAAACAGAAGAAAAAAACC 1 chrVII:316506-317422 ( 65) AGCGAAAAAAGGCGGGATAGA 1 chrXV:438466-439088 ( 51) AGTGGGGGAAAAAGAAAAGAA 1 chrX:620237-620337 ( 43) AGAGAGAGGGTGAGAAATGAA 1 chrIV:1239337-1240256 ( 12) AGAAGAAAAGGAAGAAGAAGC 1 chrXV:796953-797762 ( 75) AAAGGAAGCAGAAGAGAAAAA 1 chrV:469259-469913 ( 26) AGAGACAGACAGAGAAACAGA 1 chrV:51796-52966 ( 75) AAAGTAAGAAAAAAGAATGAA 1 chrXVI:622291-622855 ( 66) AGCGCCAGACTGAAGAAAAAA 1 chrXII:930604-931799 ( 5) AAAGAGAAACGAAGAAGAAGA 1 chrII:340714-341554 ( 12) AAGGAAAAGATATAAAAAAAG 1 chrIV:322163-323658 ( 17) AAAGAGAAACGAAGAAGAAGA 1 chrXIV:374753-375097 ( 16) AGCGCCAGACTGAAGAAAAAC 1 chrXV:619553-624745 ( 79) AGAAAAAGAAGACGACATAAG 1 chrIV:470148-471578 ( 5) AATGAAACAAAATAGAAAAAA 1 chrXVI:770799-771096 ( 64) AGCGACCGAATCAGGAAAAGG 1 chrXIII:747682-748878 ( 52) CACAAAAGAATAAGAAAAGAA 1 chrI:150547-152078 ( 66) AATAAAAGAAATAAAAATAAA 1 chrXII:214626-215162 ( 18) AGAATAAAAGTAAAAAATAAA 1 chrVIII:467996-468206 ( 22) AAAAGAAAAATATGGAAAAGA 1 chrIV:568432-569778 ( 11) GGAGAAAGAGTAAATAATAGA 1 chrVII:400868-401763 ( 30) AGTAAAAAAATTAAGAATAAA 1 chrV:237543-238952 ( 1) ACGAACAGGAAACAAAAAAAA 1 chrIV:541056-542017 ( 65) ACAATAAGAATAAGAAAAAAG 1 chrXV:979689-980286 ( 56) AATGCAAGGAAAAATAATAAA 1 chrXV:251154-253668 ( 16) AAGGCCAAAAAAAGTAAAAGG 1 chrVI:226483-226910 ( 25) AGAGAAAAAAAGAGATAAGCC 1 chrVII:998039-998561 ( 27) AATGAAAGGAAAAGTAGTAAA 1 chrII:376233-378017 ( 63) AAAGACAAGGGAAACAAAAAA 1 chrXII:898071-899871 ( 61) AATACAAGGAAGAGACAAAGC 1 chrXVI:812459-812767 ( 16) AAGAACCAAAAGAGAGAAGAA 1 chrXII:784173-784681 ( 76) AGTAAAGAAATTAAAAAAAGC 1 chrXVI:153476-156160 ( 62) AGCGGAAAAATCCAAGAAAAC 1 chrIII:127542-127899 ( 28) AGTGACACAAGATAAAATGAC 1 chrV:551773-552030 ( 26) AACGCAAGAAACAAAAACAAA 1 chrXII:852965-854084 ( 35) AGGGTCACAAAGAAACAAAAA 1 chrVII:122019-122695 ( 32) ATAGAACAAAAAAAGAATAGC 1 chrXI:313050-313666 ( 76) AAAGGAAAAAAATAAAATGCC 1 chrXIV:661344-661924 ( 74) AGGGAAGGGCAGAGGGAAAAG 1 chrXIV:567885-568625 ( 39) AGAAAAGGAATAAGTGAAACA 1 chrXVI:209161-210597 ( 75) AAAAATAAAATGAAAAATAAA 1 chrXIII:320938-321327 ( 48) GCCAAAAAAATAAAAAATGGA 1 chrXV:259300-259882 ( 51) AGAAAAAAAATAAAGGAAATG 1 chrXII:459659-460857 ( 73) AGAGGAAAAGTGCAAGATGAA 1 chrXIII:761007-764108 ( 23) AGTAAACCAATATAAAAAGAA 1 chrVII:535457-535862 ( 48) AGTAAAAGAAAATAAAAATAA 1 chrVII:205007-206295 ( 38) ACAGAACCAAAAAGATAAAAA 1 chrXIII:549534-551275 ( 20) AGTGGCAGCAGCAGACAAAAC 1 chrIV:218324-218851 ( 35) AGAAAAAAAAAGTGTAGTAGA 1 chrII:555858-558517 ( 43) ACGAAGAGAGAGCAAAAAAAG 1 chrXIII:767797-768613 ( 15) GATGAAGCGAGGAAAAAAAAC 1 chrXIV:560454-561657 ( 7) GGGGAGAAAGTACGTAAAAAA 1 chrII:88928-89522 ( 47) CAAGAAGAGATGAAAAGAAAC 1 chrXII:687624-688350 ( 45) AAAGAATGACGGCAAAAAAGC 1 chrXI:158173-159671 ( 70) TGTAGACGAATAAGAAATAAA 1 chrII:304161-305301 ( 30) GATAACAAGGTGAAAAATAGC 1 chrXVI:699932-700734 ( 71) ACGAAGAAAAAGAAACGAGGC 1 chrVII:958681-959065 ( 60) AGCACAAGCAAGAATAATAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARWRAAARAADAARAAAAARM MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.1503 E= 2.8e-037 148 -232 -158 -473 44 -109 138 -473 36 -32 10 -34 31 -1302 174 -1302 115 -90 -44 -241 113 -9 -58 -473 125 -32 -109 -473 70 -132 119 -1302 127 -190 1 -1302 127 -109 -32 -1302 40 -1302 42 8 97 -132 56 -314 131 -73 -1302 -173 91 -1302 114 -1302 102 -232 27 -173 129 -109 -73 -373 150 -1302 -90 -1302 105 -290 -1302 -3 133 -1302 1 -473 88 -109 74 -373 82 74 -44 -1302 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARWRAAARAADAARAAAAARM MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 83 E= 2.8e-037 0.891566 0.036145 0.060241 0.012048 0.433735 0.084337 0.469880 0.012048 0.409639 0.144578 0.192771 0.253012 0.397590 0.000000 0.602410 0.000000 0.710843 0.096386 0.132530 0.060241 0.698795 0.168675 0.120482 0.012048 0.759036 0.144578 0.084337 0.012048 0.518072 0.072289 0.409639 0.000000 0.771084 0.048193 0.180723 0.000000 0.771084 0.084337 0.144578 0.000000 0.421687 0.000000 0.240964 0.337349 0.626506 0.072289 0.265060 0.036145 0.795181 0.108434 0.000000 0.096386 0.602410 0.000000 0.397590 0.000000 0.650602 0.036145 0.216867 0.096386 0.783133 0.084337 0.108434 0.024096 0.903614 0.000000 0.096386 0.000000 0.662651 0.024096 0.000000 0.313253 0.807229 0.000000 0.180723 0.012048 0.590361 0.084337 0.301205 0.024096 0.566265 0.301205 0.132530 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARWRAAARAADAARAAAAARM MEME-3 regular expression -------------------------------------------------------------------------------- A[GA][AT][GA]AAA[AG]AA[ATG][AG]A[AG][AG]AA[AT]A[AG][AC] -------------------------------------------------------------------------------- Time 987.25 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:331961-334664 6.54e-01 100 chrVIII:210821-212254 2.44e-01 100 chrXV:287-993 1.62e-01 100 chrVII:73618-74232 7.29e-06 1_[-2(2.71e-09)]_48_[+2(2.71e-06)]_\ 11 chrXI:112155-112531 2.65e-01 100 chrI:166046-166553 1.35e-12 23_[+2(5.48e-09)]_16_[-1(1.66e-11)]_\ 20 chrIV:1305369-1306359 3.33e-01 100 chrXVI:818634-819904 9.39e-01 100 chrXIII:586407-586904 1.40e-10 40_[+1(4.62e-09)]_17_[-2(2.71e-09)]_\ 2 chrVII:437133-438422 6.51e-01 100 chrVII:316506-317422 1.29e-03 64_[-3(1.66e-06)]_15 chrXI:282793-284966 8.40e-04 70_[+3(9.33e-05)]_9 chrIV:541056-542017 1.26e-02 64_[+3(4.84e-06)]_15 chrIII:13987-16903 9.99e-01 100 chrXVI:435502-436187 9.02e-01 100 chrIV:1031476-1031690 8.64e-01 100 chrXI:431884-433056 4.68e-01 100 chrIX:325515-326056 5.56e-11 18_[+2(2.11e-09)]_16_[-1(2.24e-09)]_\ 25 chrXIV:557029-557994 6.32e-01 100 chrIV:980776-981224 2.15e-10 33_[+1(1.06e-07)]_25_[-2(3.22e-10)]_\ 1 chrXII:231982-234300 2.57e-01 100 chrIX:323949-324675 2.37e-04 50_[+1(1.06e-07)]_29 chrII:254641-255941 6.46e-01 100 chrXI:325843-327619 5.02e-01 100 chrXVI:209161-210597 4.57e-02 74_[-3(1.46e-05)]_5 chrVII:328316-329111 5.02e-01 100 chrXV:778171-779458 9.27e-01 100 chrXI:589791-590416 1.13e-01 100 chrVII:787027-788047 1.98e-01 100 chrXV:853968-854401 3.02e-07 62_[+1(1.66e-11)]_17 chrXIII:23692-25926 9.53e-01 100 chrV:135173-135690 3.99e-07 53_[+1(1.76e-10)]_26 chrXVI:653895-655673 2.91e-01 100 chrII:444648-445567 7.07e-02 100 chrIV:579026-580807 3.35e-02 100 chrXV:709989-710486 1.09e-03 54_[-1(8.36e-07)]_25 chrIV:892429-892849 6.80e-01 100 chrXIII:731391-731564 7.47e-01 100 chrVI:210408-210890 1.70e-04 29_[+1(2.88e-07)]_50 chrXII:708078-711268 1.36e-01 100 chrI:30139-30931 2.98e-01 100 chrX:415859-415959 2.76e-01 100 chrVII:227481-228034 7.85e-01 100 chrVIII:375315-376151 3.84e-01 100 chrXII:855416-857711 9.89e-01 100 chrXIII:183675-184164 5.12e-10 38_[+1(3.64e-09)]_14_[-2(3.83e-08)]_\ 7 chrXIV:229557-231041 2.12e-01 100 chrXIV:631515-632184 6.83e-10 56_[+1(3.14e-14)]_23 chrII:241394-241854 7.48e-01 100 chrXVI:784664-786279 8.71e-02 100 chrXII:1041710-1042665 3.24e-01 100 chrIV:1461443-1462438 9.23e-01 100 chrXV:619553-624745 4.73e-03 78_[-3(2.60e-06)]_1 chrXIII:161867-164372 3.47e-01 100 chrVII:828339-829228 7.61e-02 100 chrXI:457397-459080 7.60e-01 100 chrX:227749-227849 7.28e-01 100 chrVI:180636-181232 8.36e-01 100 chrXVI:372802-373323 1.25e-03 54_[-3(1.12e-07)]_25 chrVI:63916-65394 7.55e-01 100 chrXI:208494-209065 9.49e-01 100 chrXII:817117-820616 6.54e-01 100 chrXI:551219-552861 1.94e-01 100 chrX:651862-651962 1.12e-01 100 chrV:237543-238952 6.47e-03 [-3(4.84e-06)]_79 chrIV:1016415-1017791 5.83e-02 100 chrVII:114939-116138 3.58e-10 5_[+2(2.70e-08)]_39_[-1(1.34e-09)]_\ 15 chrXIII:295917-299579 8.74e-01 100 chrXIV:63211-64675 2.34e-01 100 chrII:592353-592806 4.10e-01 100 chrXII:374217-374673 2.58e-04 1_[-1(1.25e-07)]_78 chrVII:958681-959065 1.37e-01 59_[+3(5.85e-05)]_20 chrXI:38573-39151 4.98e-01 100 chrXI:439893-440966 5.99e-01 100 chrXII:950903-953569 2.96e-01 100 chrII:644982-645446 3.69e-06 43_[-1(8.90e-10)]_36 chrV:288130-288812 4.17e-10 31_[+1(8.89e-07)]_25_[-2(3.22e-10)]_\ 3 chrXII:257698-259177 7.08e-01 100 chrIV:1150198-1151170 4.37e-01 100 chrXII:11099-11408 7.04e-01 100 chrVII:122019-122695 1.15e-09 3_[-1(1.76e-10)]_7_[-3(1.23e-05)]_\ 48 chrXVI:572052-572580 3.37e-11 8_[+2(3.83e-08)]_14_[-1(3.64e-09)]_\ 37 chrV:551773-552030 1.65e-02 25_[-3(1.03e-05)]_54 chrXIV:628100-629387 5.15e-01 100 chrVII:738451-739358 8.24e-02 100 chrII:220777-221099 1.23e-01 100 chrII:59450-60818 6.91e-01 100 chrXII:922166-922548 7.63e-01 100 chrXV:964706-966674 2.63e-03 65_[-3(6.28e-07)]_14 chrVIII:74801-76954 3.82e-02 34_[-3(8.19e-05)]_45 chrVI:204773-205210 1.91e-06 29_[-2(1.86e-09)]_51 chrIII:81925-82793 1.00e+00 100 chrXV:1053808-1054016 5.38e-01 100 chrIV:118414-118904 5.42e-01 100 chrXV:168082-168502 6.92e-01 100 chrVII:648125-648455 9.35e-02 100 chrXVI:352194-353353 9.91e-01 100 chrXII:426936-427448 2.63e-04 30_[-1(1.06e-07)]_49 chrXVI:812459-812767 5.77e-03 15_[+3(7.83e-06)]_64 chrVIII:374576-375065 1.66e-01 100 chrV:441845-442685 3.20e-01 100 chrIII:28510-31199 9.17e-01 100 chrXVI:686310-686784 6.68e-01 100 chrXII:1026800-1027357 8.93e-01 100 chrXII:166434-168279 8.01e-01 100 chrII:591385-591805 2.10e-01 100 chrVIII:62244-63505 3.35e-01 100 chrXVI:880089-880962 1.06e-01 100 chrXII:1028157-1028469 8.04e-05 72_[-3(1.31e-07)]_7 chrXV:87015-87211 2.61e-01 100 chrII:304161-305301 7.31e-02 29_[+3(4.74e-05)]_50 chrIX:68656-69896 4.37e-01 100 chrIV:437507-438545 7.18e-01 100 chrVI:162007-162486 5.12e-10 37_[+2(3.83e-08)]_14_[-1(3.64e-09)]_\ 8 chrV:51796-52966 4.75e-03 74_[+3(2.09e-06)]_5 chrXVI:882489-883029 1.31e-01 100 chrXV:593948-594781 4.39e-05 49_[+1(3.64e-09)]_30 chrXII:932186-932556 5.75e-01 100 chrIV:1488536-1490375 6.57e-04 31_[-3(6.82e-08)]_48 chrXV:444626-446184 1.57e-01 100 chrVII:648746-649607 9.18e-01 100 chrXIII:551464-553380 9.69e-01 100 chrVIII:145893-146463 9.71e-01 100 chrIV:491476-492629 6.62e-01 100 chrV:303830-306081 3.51e-01 100 chrVII:438711-440014 3.30e-01 100 chrXV:1005485-1006111 4.73e-01 100 chrII:376233-378017 2.28e-02 62_[+3(5.34e-06)]_17 chrXV:877731-878030 3.01e-01 100 chrX:414803-414903 7.19e-08 21_[-1(1.76e-10)]_58 chrVII:544282-546167 2.48e-01 100 chrX:233685-233785 6.22e-01 100 chrXII:498015-499740 2.74e-01 100 chrXII:86850-87463 6.94e-03 77_[+3(1.32e-06)]_2 chrIV:472813-473518 1.39e-01 100 chrI:182351-182744 5.53e-11 34_[+1(1.06e-07)]_25_[-2(3.22e-10)] chrXIV:442820-444334 8.00e-01 100 chrIV:1233301-1234317 6.16e-01 100 chrVII:442349-443629 7.18e-01 100 chrXI:332676-335012 1.95e-01 100 chrXI:202861-203297 1.74e-07 11_[-1(1.76e-10)]_68 chrV:166637-167650 4.50e-01 100 chrXI:430416-431430 6.28e-01 100 chrXV:724828-725992 1.04e-01 100 chrIV:1031888-1032696 2.57e-03 13_[+3(4.22e-07)]_66 chrXIII:572516-573514 2.12e-01 100 chrVII:405301-405778 3.41e-05 21_[-1(3.25e-09)]_58 chrX:417122-417222 9.72e-02 100 chrX:683663-683763 7.02e-01 100 chrIII:162012-163953 6.85e-01 100 chrXIII:913351-914808 4.31e-01 100 chrVII:878619-879461 1.75e-01 100 chrXIII:424948-426971 7.78e-01 100 chrXII:1017648-1019375 9.71e-01 100 chrVIII:147472-148773 3.45e-01 100 chrIV:1239337-1240256 1.90e-03 11_[+3(1.86e-06)]_68 chrVII:496648-497624 9.77e-01 100 chrVIII:505167-505614 1.20e-01 100 chrIV:217057-218096 6.80e-01 100 chrXII:282617-283876 7.58e-01 100 chrVII:998039-998561 9.26e-03 26_[-3(5.34e-06)]_53 chrXIII:195887-196411 2.01e-04 45_[-2(1.14e-07)]_35 chrV:487079-487736 9.85e-01 100 chrVII:149224-149696 6.11e-01 100 chrIV:469362-469578 5.40e-01 100 chrXII:214626-215162 4.16e-10 17_[+3(3.57e-06)]_10_[+1(1.66e-11)]_\ 31 chrIII:176694-179896 7.87e-01 100 chrVIII:84285-85569 8.78e-01 100 chrX:390826-390926 6.59e-10 43_[+1(1.54e-08)]_16_[-2(1.31e-07)] chrXV:87401-88092 6.73e-01 100 chrX:75867-75967 1.13e-01 100 chrXV:113480-114205 5.26e-11 15_[+2(2.11e-09)]_16_[-1(2.24e-09)]_\ 28 chrXI:217546-219011 1.35e-01 100 chrXIV:96056-96649 4.31e-01 100 chrIV:229456-230726 3.64e-01 100 chrXIV:569678-570025 5.49e-08 75_[+1(2.81e-10)]_4 chrII:625233-625990 4.08e-01 100 chrIV:1165439-1165757 6.72e-01 100 chrX:204303-204403 8.71e-01 100 chrV:469259-469913 1.31e-02 25_[-3(2.09e-06)]_54 chrXII:875281-875830 9.68e-01 100 chrXVI:842856-843662 9.14e-01 100 chrV:321721-323289 1.37e-01 34_[+3(9.94e-05)]_45 chrVIII:103992-106447 3.30e-01 100 chrI:180906-181445 1.45e-04 21_[+2(2.26e-08)]_59 chrII:350422-351166 1.39e-01 100 chrX:620237-620337 4.98e-04 42_[-3(1.86e-06)]_37 chrIV:507654-510296 9.19e-02 100 chrX:197106-197206 3.76e-12 18_[+1(1.76e-10)]_16_[-2(1.86e-09)]_\ 25 chrXII:459659-460857 2.25e-02 72_[-3(1.73e-05)]_7 chrXII:348051-348832 9.31e-01 100 chrII:265746-266698 1.00e+00 100 chrXII:780713-781855 9.79e-02 100 chrII:613745-614036 9.56e-01 100 chrXVI:153476-156160 2.27e-03 61_[-3(8.59e-06)]_18 chrI:150547-152078 8.15e-03 65_[+3(3.57e-06)]_14 chrXIV:771759-772289 1.14e-01 100 chrIX:137228-138284 3.58e-01 100 chrVIII:115417-116449 5.31e-01 100 chrX:172061-172161 7.10e-01 100 chrXV:22045-22478 9.11e-01 100 chrXIII:767797-768613 6.17e-02 14_[-3(2.40e-05)]_65 chrXII:1064938-1065270 7.47e-01 100 chrXIV:546956-547443 1.57e-06 16_[-1(3.28e-10)]_63 chrVII:412084-412585 1.39e-10 19_[+1(4.62e-09)]_17_[-2(2.71e-09)]_\ 23 chrII:87894-88592 5.57e-01 100 chrV:430589-431563 5.18e-01 100 chrX:115453-115553 3.46e-01 100 chrII:555858-558517 1.94e-02 42_[+3(2.40e-05)]_37 chrXIV:567885-568625 3.98e-02 38_[-3(1.46e-05)]_41 chrIV:45260-46209 4.57e-01 100 chrII:504529-504730 3.12e-01 100 chrXVI:451552-452634 9.87e-01 100 chrXII:128340-129256 6.13e-01 100 chrXV:274489-275010 1.71e-04 43_[-1(3.09e-07)]_36 chrIX:336120-336778 4.72e-01 100 chrIII:262698-263222 7.54e-01 100 chrXVI:404512-405882 9.92e-01 100 chrIV:1243041-1243309 3.38e-01 100 chrXV:259300-259882 1.41e-02 50_[-3(1.73e-05)]_29 chrXIII:549534-551275 6.82e-03 19_[+3(2.22e-05)]_60 chrX:541341-541441 6.71e-04 14_[-1(1.06e-07)]_65 chrIV:465212-465800 2.91e-01 100 chrIV:322163-323658 8.19e-04 16_[+3(2.33e-06)]_63 chrX:90655-90755 4.49e-01 100 chrXIII:731832-733591 2.55e-01 100 chrV:504661-505256 1.27e-04 52_[-3(5.52e-07)]_27 chrXII:636618-640227 1.98e-01 100 chrIV:305665-307850 1.86e-01 100 chrXII:949707-950128 5.10e-01 100 chrI:229315-230149 1.16e-01 100 chrXV:912205-912590 6.64e-01 100 chrVII:400868-401763 4.23e-03 29_[-3(4.84e-06)]_50 chrXV:796953-797762 9.21e-03 74_[-3(2.09e-06)]_5 chrXI:666342-666752 1.86e-01 100 chrIV:1524403-1525130 5.80e-01 100 chrXIII:145999-146189 2.98e-01 100 chrVII:205007-206295 6.16e-05 2_[-1(1.13e-06)]_14_[-3(2.22e-05)]_\ 42 chrXIII:353464-353668 6.70e-01 100 chrXIV:25186-25991 7.67e-01 100 chrIII:30-1363 5.53e-01 100 chrII:236275-237343 6.33e-01 100 chrII:226891-227396 1.76e-04 32_[-1(1.06e-07)]_47 chrVI:157413-158779 7.75e-01 100 chrXV:409604-410249 5.02e-01 100 chrV:434967-435149 9.87e-01 100 chrXVI:770799-771096 5.01e-04 63_[+3(2.89e-06)]_16 chrVII:1003917-1004415 3.14e-03 14_[+3(1.17e-06)]_65 chrXV:522200-522652 2.28e-01 100 chrX:374177-374277 7.28e-01 100 chrIII:168066-168636 3.73e-07 9_[+1(1.03e-09)]_70 chrXI:309150-309894 9.25e-01 100 chrIV:129385-130883 1.67e-01 100 chrXII:939564-941251 9.07e-01 100 chrXII:810168-812958 8.66e-01 100 chrII:413864-415304 5.49e-01 100 chrXVI:743745-744710 1.08e-01 100 chrXVI:377901-378466 9.44e-01 100 chrXI:109301-110846 7.37e-01 100 chrXII:1001722-1003372 3.28e-01 100 chrXV:487182-487731 9.96e-10 38_[+2(1.25e-09)]_17_[-1(8.25e-08)]_\ 4 chrIV:427631-428742 7.44e-01 100 chrXV:1027228-1029694 5.62e-02 100 chrXVI:55783-56536 1.06e-04 69_[+1(1.15e-07)]_10 chrIV:1359115-1359680 8.99e-01 100 chrVII:483389-483696 1.24e-01 100 chrXVI:685369-686036 8.99e-01 100 chrXIII:507119-508324 2.74e-01 100 chrXIV:493289-495075 1.35e-01 100 chrXVI:690066-690737 7.57e-01 100 chrXI:308021-308420 1.53e-05 21_[-2(2.71e-09)]_59 chrXII:687624-688350 8.78e-02 44_[+3(3.53e-05)]_35 chrIV:1492167-1493173 7.35e-01 100 chrIV:915053-916237 5.02e-01 100 chrXVI:109134-109443 7.12e-01 100 chrV:250136-251491 8.29e-01 100 chrVII:422872-423652 2.92e-01 100 chrXIII:861185-861491 5.21e-02 100 chrXIII:253370-253556 6.18e-01 100 chrIX:210524-211190 1.48e-01 3_[-3(6.27e-05)]_76 chrXIV:173858-174659 1.87e-01 100 chrXIV:715819-716680 6.25e-03 15_[+3(1.04e-06)]_64 chrXII:262876-264376 1.00e-01 100 chrVII:914807-915270 9.17e-01 100 chrIII:143195-143389 9.06e-01 100 chrVII:363937-364445 3.37e-04 1_[-3(1.31e-07)]_23_[+3(7.83e-06)]_\ 34 chrVIII:383048-383664 2.02e-02 28_[+3(8.75e-05)]_51 chrIV:308131-310201 9.22e-01 100 chrVII:440273-442107 4.43e-01 100 chrXII:97088-97890 9.52e-01 100 chrVII:920526-921244 5.01e-03 75_[+3(9.19e-07)]_4 chrXIV:498844-501890 9.65e-01 100 chrX:440319-440419 5.08e-01 100 chrVI:226483-226910 1.94e-09 24_[+3(5.34e-06)]_6_[+1(1.76e-10)]_\ 28 chrVII:773928-774534 3.20e-03 39_[-3(5.52e-07)]_40 chrXII:852965-854084 3.52e-02 34_[+3(1.23e-05)]_45 chrXII:585199-585813 2.66e-03 61_[-3(5.52e-07)]_18 chrXV:677803-679044 7.09e-01 100 chrXV:463053-464783 9.91e-01 100 chrI:71599-73725 7.90e-01 100 chrIV:1012294-1013618 4.98e-01 100 chrX:701737-701837 6.32e-01 100 chrVI:199278-199636 4.43e-03 56_[+3(1.32e-06)]_23 chrV:438157-439246 1.34e-05 54_[+2(2.71e-09)]_26 chrXII:448492-449229 9.99e-01 100 chrX:523911-524011 3.22e-01 100 chrXII:91025-92912 2.93e-01 100 chrIV:1302850-1303052 9.15e-01 100 chrIII:127542-127899 5.51e-08 27_[+3(1.03e-05)]_3_[+2(1.25e-09)]_\ 29 chrX:216058-216158 9.91e-01 100 chrXIII:130773-132174 5.52e-01 100 chrVII:730924-731436 8.54e-10 12_[+2(1.25e-09)]_17_[-1(8.25e-08)]_\ 30 chrII:237650-238993 2.73e-01 100 chrXIII:5392-5696 4.74e-01 100 chrXIV:560454-561657 4.28e-03 6_[+3(3.03e-05)]_73 chrXIII:674414-674869 1.69e-01 100 chrII:9387-9873 4.23e-09 8_[+2(1.42e-09)]_27_[-1(6.50e-07)]_\ 24 chrX:229436-229536 8.60e-01 100 chrXI:140584-142198 8.57e-01 100 chrXIV:234227-235199 1.17e-01 100 chrXIII:38039-38826 8.61e-01 100 chrXII:88169-88593 1.94e-01 100 chrXI:364200-365122 1.61e-01 100 chrV:145263-146139 1.08e-02 100 chrXVI:338632-339328 7.34e-02 100 chrVIII:281790-282713 9.66e-01 100 chrV:28098-29962 2.77e-01 100 chrIV:220929-222360 9.35e-01 100 chrIX:197347-197974 6.16e-10 22_[-1(8.90e-10)]_9_[-3(6.82e-08)]_\ 27 chrVII:186923-187748 9.32e-01 100 chrXIV:625933-627225 8.44e-01 100 chrIX:231223-232429 2.77e-01 100 chrIV:1236358-1238881 4.05e-01 100 chrX:156193-156293 1.55e-01 100 chrXV:571723-572172 5.99e-02 66_[+2(8.54e-05)]_14 chrVII:695367-696693 2.99e-01 100 chrV:362677-363276 5.21e-01 100 chrXV:867029-868466 4.43e-01 100 chrXI:617596-619400 6.50e-01 100 chrIX:300011-300598 7.67e-04 20_[-2(7.87e-08)]_60 chrXIII:372134-372719 5.31e-05 78_[+1(4.62e-09)]_1 chrIV:218324-218851 2.70e-03 34_[+3(2.40e-05)]_45 chrVII:185072-186090 2.90e-01 100 chrII:606209-607742 2.72e-01 100 chrIV:470148-471578 1.28e-02 4_[-3(2.89e-06)]_75 chrXV:353768-354306 8.23e-06 63_[+1(2.24e-09)]_16 chrXVI:701854-702364 1.79e-01 100 chrIV:542249-542472 8.06e-01 100 chrXI:665632-666140 1.13e-01 21_[-1(5.19e-05)]_58 chrXIV:331274-332424 3.41e-01 100 chrVIII:34372-36198 9.90e-02 100 chrVIII:358258-358802 1.60e-11 7_[+1(2.30e-08)]_35_[-2(1.40e-07)]_\ 17 chrV:301418-302544 1.65e-01 100 chrVIII:214150-214337 9.56e-05 61_[-3(6.82e-08)]_18 chrXV:663320-664327 3.92e-05 48_[+1(4.62e-09)]_31 chrV:306271-307649 1.63e-01 100 chrXV:281672-282531 6.81e-01 100 chrVIII:134064-134654 3.73e-07 52_[-1(1.03e-09)]_27 chrXVI:745352-746416 6.56e-01 100 chrIX:174707-175380 4.85e-11 43_[+2(2.11e-09)]_16_[-1(2.24e-09)] chrVII:254170-254767 4.87e-01 100 chrII:404979-405167 6.21e-01 100 chrXV:254533-255121 3.83e-05 34_[+3(2.77e-08)]_45 chrVI:136968-137933 3.52e-01 100 chrXII:201667-203055 5.82e-01 100 chrVII:560978-561920 4.21e-01 100 chrXVI:810446-810919 1.10e-06 49_[+2(1.25e-09)]_31 chrVII:726913-728746 9.25e-01 100 chrXIV:602105-602535 1.02e-07 13_[+3(8.19e-05)]_13_[+2(1.95e-10)]_\ 33 chrXV:1054253-1054626 8.36e-01 100 chrXV:438466-439088 9.75e-05 50_[-3(1.86e-06)]_29 chrII:340714-341554 3.50e-03 11_[-3(2.33e-06)]_68 chrX:424412-424512 6.12e-01 100 chrIV:1256903-1257311 6.47e-02 100 chrXII:866284-866506 1.78e-01 100 chrXIV:632420-632906 2.24e-05 28_[-1(8.25e-08)]_51 chrV:363609-364510 8.34e-01 100 chrXIV:725691-726384 9.80e-01 100 chrX:542764-542864 9.77e-01 100 chrXI:158173-159671 1.10e-01 69_[-3(4.41e-05)]_10 chrIV:644921-645553 2.16e-01 100 chrXI:24603-26519 5.97e-01 100 chrII:547998-549620 3.74e-01 100 chrX:617770-617870 1.06e-10 13_[+2(1.62e-10)]_44_[-1(5.83e-08)]_\ 2 chrXV:960847-963619 6.61e-01 100 chrIV:519563-520181 2.21e-04 45_[-3(4.41e-05)]_11_[-3(1.87e-08)]_\ 2 chrVII:557975-558439 8.70e-01 100 chrIV:354683-357000 1.70e-01 100 chrII:197095-197842 2.42e-02 100 chrX:226122-226222 7.66e-01 100 chrXI:302420-303219 3.14e-01 100 chrV:130772-131443 3.04e-07 34_[+1(2.54e-09)]_45 chrX:453348-453448 6.42e-01 100 chrIII:294696-296213 6.44e-01 100 chrII:680394-682155 5.53e-01 100 chrIV:1094892-1095688 9.61e-01 100 chrVIII:361638-363199 2.99e-02 100 chrXIV:576473-577384 5.01e-01 100 chrXII:898071-899871 1.02e-03 60_[-3(7.13e-06)]_19 chrXII:962723-964343 9.38e-01 100 chrXIII:923400-924325 6.27e-01 100 chrXVI:645355-645731 6.19e-01 100 chrII:604304-605973 3.00e-01 100 chrXV:380507-381110 4.21e-01 100 chrXIII:872692-872928 9.83e-02 100 chrV:117781-118275 7.10e-01 100 chrV:406379-409362 8.39e-01 100 chrV:99781-100388 7.96e-01 100 chrIV:1401182-1403499 5.13e-01 100 chrV:311755-312315 3.25e-07 47_[+1(1.66e-11)]_32 chrVII:610387-611575 5.69e-02 18_[-1(6.59e-05)]_61 chrXV:251154-253668 2.19e-02 15_[-3(5.34e-06)]_64 chrXII:65176-65722 2.03e-02 64_[+3(9.94e-05)]_15 chrVII:559279-560024 6.50e-01 100 chrI:141513-143739 5.08e-01 100 chrII:611833-612375 7.86e-01 100 chrV:101172-101912 6.67e-01 100 chrXIV:302538-303689 4.35e-01 100 chrIV:448502-450122 6.89e-02 100 chrXIV:231547-231749 3.28e-01 100 chrIV:1245659-1246186 8.26e-01 100 chrXVI:794942-796025 2.01e-02 66_[+1(9.54e-05)]_13 chrX:211863-211963 6.57e-01 100 chrXV:82821-83433 9.96e-01 100 chrVIII:553433-553913 4.00e-01 100 chrIX:394540-395139 4.49e-03 59_[+3(1.66e-06)]_20 chrXI:162222-162766 1.57e-05 52_[+1(3.25e-09)]_27 chrIV:1354459-1355598 2.95e-03 16_[-3(1.32e-06)]_63 chrIII:315644-316591 3.58e-01 100 chrX:355128-355228 7.31e-06 35_[-1(3.25e-09)]_44 chrII:256115-257152 9.84e-02 100 chrIV:1162712-1164720 9.20e-02 100 chrVIII:451076-453254 6.90e-01 100 chrXVI:303047-304366 2.61e-03 5_[-1(2.43e-06)]_74 chrXIII:605624-606083 1.18e-03 44_[+3(1.78e-07)]_35 chrVII:535457-535862 3.02e-02 47_[-3(2.22e-05)]_32 chrVII:533516-535219 4.05e-01 100 chrIV:1329862-1331234 7.17e-01 100 chrXII:930604-931799 6.06e-04 4_[-3(2.33e-06)]_75 chrXVI:859409-860646 6.30e-01 100 chrX:517645-517745 3.63e-01 100 chrXV:326294-327556 9.60e-01 100 chrIV:434003-434516 3.59e-05 64_[+1(2.24e-09)]_15 chrIV:619573-620294 2.12e-01 100 chrXIII:504647-505259 2.04e-03 74_[-1(1.13e-06)]_5 chrXVI:868484-868866 3.63e-01 100 chrII:143135-144521 1.09e-02 78_[+3(1.66e-06)]_1 chrXIII:225801-227040 1.32e-01 100 chrII:88928-89522 9.57e-02 46_[-3(3.53e-05)]_33 chrVII:318933-320126 1.28e-01 100 chrVIII:466787-467616 2.74e-03 38_[+3(3.68e-07)]_41 chrIV:339844-341948 4.70e-01 100 chrV:434373-434768 1.49e-02 30_[+1(6.16e-05)]_49 chrVII:329-1094 9.89e-01 100 chrXI:513222-513884 7.70e-01 100 chrV:302793-303459 8.86e-02 100 chrV:13561-14346 9.96e-01 100 chrXIV:23841-25018 8.40e-01 100 chrXIV:374753-375097 9.68e-08 15_[+3(2.60e-06)]_17_[-1(2.30e-08)]_\ 26 chrXIII:807582-808566 9.59e-01 100 chrXV:925209-925420 5.95e-01 100 chrXIV:413516-417002 5.47e-01 100 chrVII:531470-531779 2.62e-05 41_[+2(8.54e-05)]_15_[-1(1.06e-07)]_\ 3 chrX:703350-703450 2.46e-01 100 chrII:301017-301607 3.67e-01 100 chrIV:1022869-1023174 8.00e-01 100 chrV:77688-79946 3.48e-01 100 chrV:491600-492732 1.49e-01 62_[+3(7.18e-05)]_17 chrVIII:394084-394605 9.27e-01 100 chrX:538351-538451 3.68e-01 100 chrIII:227765-228202 1.62e-09 14_[+2(3.22e-10)]_12_[-2(8.78e-05)]_\ 12_[-1(8.89e-07)]_1 chrXII:731913-732254 3.07e-06 62_[+2(1.62e-10)]_18 chrXII:793756-797412 9.70e-01 100 chrXI:219473-220116 1.97e-01 100 chrXV:903944-905216 7.47e-01 100 chrX:531496-531596 1.21e-04 56_[+2(3.83e-08)]_24 chrXI:106340-107410 5.69e-01 100 chrXII:366034-366567 1.46e-01 100 chrIV:1304979-1305201 6.51e-01 100 chrIX:182732-184818 5.72e-01 100 chrXVI:699932-700734 1.26e-01 70_[-3(5.85e-05)]_9 chrXV:227445-228613 2.77e-01 100 chrVI:147886-148896 2.82e-02 100 chrXII:5542-5904 9.63e-02 100 chrV:268970-270262 6.12e-01 100 chrVII:94372-94748 7.25e-01 100 chrVIII:556540-557124 5.91e-01 100 chrVII:146796-149030 8.35e-01 100 chrIV:116227-118220 9.97e-01 100 chrXVI:559918-560673 7.21e-07 18_[-2(1.40e-07)]_62 chrVIII:475320-475903 3.51e-01 100 chrVIII:388665-389218 1.92e-10 11_[+1(3.28e-10)]_46_[-2(1.14e-07)]_\ 2 chrXIII:420303-420905 1.39e-05 43_[+1(4.62e-09)]_36 chrXVI:514140-517144 8.29e-01 100 chrIV:884171-884635 2.49e-04 13_[+2(1.31e-07)]_67 chrVIII:290560-292731 6.61e-01 100 chrX:73461-73561 4.54e-02 100 chrXV:300732-301457 3.81e-04 58_[+2(1.14e-07)]_22 chrXVI:376919-377385 5.61e-01 100 chrXVI:555602-556406 5.96e-01 100 chrXVI:688710-689892 3.19e-01 100 chrXVI:641949-643589 5.90e-01 100 chrXIII:508623-508890 2.72e-01 100 chrX:396187-396287 3.72e-01 100 chrVIII:80153-80997 8.38e-01 100 chrXII:241432-241918 7.89e-01 100 chrXII:734727-735272 1.73e-01 73_[+3(9.94e-05)]_6 chrXII:368285-370291 3.67e-02 100 chrIII:123379-123746 4.41e-10 74_[+1(3.14e-14)]_5 chrIV:1352341-1352713 7.67e-04 35_[-2(7.87e-08)]_45 chrVII:578904-579311 2.84e-01 100 chrIV:568432-569778 5.97e-03 10_[+3(4.84e-06)]_69 chrXIV:102518-103375 4.16e-01 100 chrXIII:650765-652994 4.46e-01 100 chrXVI:213041-213459 6.72e-02 100 chrXIV:575062-576293 3.48e-01 100 chrVII:845370-845899 1.83e-04 70_[+2(3.83e-08)]_10 chrXI:163326-164517 5.55e-01 100 chrXV:980486-981155 8.13e-01 100 chrXV:1003865-1005205 2.03e-03 [-3(6.28e-07)]_13_[-3(6.27e-05)]_45 chrXIII:761007-764108 6.42e-02 22_[+3(1.88e-05)]_57 chrXVI:775676-776210 4.63e-01 100 chrX:154615-154715 5.77e-01 100 chrXV:960434-960658 2.22e-01 100 chrXIV:661344-661924 8.47e-03 73_[+3(1.46e-05)]_6 chrXII:84170-84416 1.92e-01 100 chrII:326564-327203 1.36e-05 6_[-2(7.29e-08)]_74 chrXI:379156-380225 1.50e-05 45_[+2(2.71e-09)]_35 chrII:36188-36515 3.66e-01 100 chrVII:706636-707324 5.89e-01 100 chrVIII:562330-562565 1.90e-01 100 chrVIII:467996-468206 1.47e-02 21_[-3(3.95e-06)]_58 chrV:151580-153016 8.50e-01 100 chrXIII:56022-56887 2.54e-01 100 chrXI:313050-313666 6.82e-03 75_[+3(1.46e-05)]_4 chrX:348744-348844 9.43e-01 100 chrVII:736188-736824 5.91e-01 100 chrXIII:91802-92114 4.57e-01 100 chrX:450892-450992 6.70e-01 100 chrXIII:480346-480892 1.20e-06 61_[+1(1.76e-10)]_18 chrXI:411212-414530 5.98e-01 100 chrVIII:555911-556363 9.43e-01 100 chrXVI:581742-582798 9.39e-01 100 chrXII:656665-657173 2.46e-06 74_[+1(1.76e-10)]_5 chrIV:1175597-1176116 1.27e-08 28_[+2(1.31e-07)]_16_[-1(1.54e-08)]_\ 15 chrXI:558642-559455 5.57e-01 100 chrIX:98895-99556 1.69e-01 100 chrXV:226391-227170 1.63e-01 100 chrIX:370213-370774 4.03e-07 14_[-1(8.90e-10)]_65 chrXI:83520-84457 1.07e-01 100 chrXV:979689-980286 2.57e-02 55_[+3(5.34e-06)]_24 chrXI:518900-519504 4.16e-03 35_[+3(5.52e-07)]_4_[-3(7.13e-06)]_\ 19 chrXIII:320938-321327 1.73e-08 47_[+3(1.73e-05)]_6_[+1(1.76e-10)]_\ 5 chrV:354698-355400 6.00e-01 100 chrVII:364865-366990 8.40e-01 100 chrXII:673223-674512 3.76e-01 100 chrIV:520348-521445 3.93e-01 100 chrIV:1301563-1302628 9.93e-01 100 chrXVI:789654-789957 6.56e-02 100 chrXIII:886922-889201 8.11e-01 100 chrIV:946155-946846 8.46e-01 100 chrIV:83109-83817 7.22e-01 100 chrII:81894-83011 8.18e-01 100 chrVI:222908-223830 1.15e-01 100 chrVII:857254-857621 1.47e-07 [+1(1.13e-06)]_57_[-2(2.26e-08)]_2 chrXIII:362805-364057 2.51e-01 100 chrVIII:119680-120165 2.12e-01 100 chrIX:438785-439511 9.94e-01 100 chrVII:277485-278743 9.06e-01 100 chrIX:316701-318312 6.66e-01 100 chrXI:578752-579352 1.83e-06 27_[-1(1.34e-09)]_52 chrXV:339923-340710 1.33e-07 42_[+1(1.25e-07)]_16_[-2(1.71e-07)]_\ 1 chrVII:110436-110918 4.78e-02 7_[+1(6.16e-05)]_72 chrXV:80356-82623 1.66e-01 100 chrVII:794119-794745 1.41e-12 40_[+2(5.48e-09)]_16_[-1(1.66e-11)]_\ 3 chrVII:959962-961526 4.40e-01 100 chrV:138226-140772 2.45e-01 100 chrXIV:505532-507730 1.93e-01 100 chrIX:98153-98696 6.60e-02 100 chrXIV:88644-89933 7.71e-03 78_[-3(1.48e-06)]_1 chrII:405562-406729 5.79e-01 100 chrXIII:747682-748878 1.10e-02 51_[-3(3.57e-06)]_28 chrIV:43954-44518 1.57e-01 100 chrX:435608-435708 8.77e-02 100 chrII:642882-643399 8.31e-01 100 chrVII:479135-482999 2.92e-01 100 chrXVI:412253-413777 3.72e-01 100 chrXIV:392126-392755 2.10e-01 100 chrXII:784173-784681 8.63e-06 45_[-1(3.09e-07)]_9_[-3(8.59e-06)]_\ 4 chrXI:100223-106032 2.27e-01 100 chrV:122134-123040 6.16e-03 100 chrXIII:463203-464066 5.02e-04 10_[-1(1.06e-07)]_69 chrIV:488459-489201 2.44e-09 26_[+1(3.64e-09)]_17_[-2(7.29e-08)]_\ 16 chrIII:141875-143021 3.85e-02 100 chrXVI:622291-622855 9.20e-08 26_[+1(2.30e-08)]_18_[-3(2.33e-06)]_\ 14 chrXII:592116-593153 3.05e-06 9_[-2(1.62e-10)]_71 chrIV:1269877-1270995 3.50e-02 68_[+2(7.01e-05)]_12 chrII:373502-375870 7.80e-01 100 chrVII:779431-779978 1.06e-06 2_[-1(5.88e-10)]_77 chrVI:136291-136769 5.27e-02 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************