******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--YAP1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:376139-376865 1.0000 100 chrVIII:123489-124004 1.0000 100 chrXIV:783790-784119 1.0000 100 chrVII:73691-74236 1.0000 100 chrXI:219419-220083 1.0000 100 chrI:166046-166683 1.0000 100 chrIV:1441179-1442924 1.0000 100 chrXVI:810438-810843 1.0000 100 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chrII:606217-607490 1.0000 100 chrXV:1003912-1005171 1.0000 100 chrIV:1256914-1257306 1.0000 100 chrIV:802562-802992 1.0000 100 chrX:651158-651258 1.0000 100 chrVII:531520-531810 1.0000 100 chrIV:601743-602292 1.0000 100 chrVIII:133584-134619 1.0000 100 chrIV:1201221-1202762 1.0000 100 chrXV:228036-228615 1.0000 100 chrIII:28549-31245 1.0000 100 chrVII:799691-800257 1.0000 100 chrIV:1165060-1165736 1.0000 100 chrV:441861-442665 1.0000 100 chrX:521591-521691 1.0000 100 chrXIII:462857-463896 1.0000 100 chrXIII:650681-652974 1.0000 100 chrXIV:499985-501728 1.0000 100 chrXV:109821-111298 1.0000 100 chrVII:1003962-1004403 1.0000 100 chrXIII:747754-748182 1.0000 100 chrXI:430784-431374 1.0000 100 chrIX:96775-97445 1.0000 100 chrIV:1524171-1525113 1.0000 100 chrXII:208675-208963 1.0000 100 chrVII:857245-857613 1.0000 100 chrX:353704-353804 1.0000 100 chrIV:359254-359865 1.0000 100 chrV:311760-312288 1.0000 100 chrXIII:731452-733606 1.0000 100 chrVII:773701-774524 1.0000 100 chrIV:118448-118855 1.0000 100 chrVII:738508-739565 1.0000 100 chrIV:1031582-1032446 1.0000 100 chrII:226878-227370 1.0000 100 chrIX:184204-184469 1.0000 100 chrIV:1233059-1235041 1.0000 100 chrII:9386-9892 1.0000 100 chrI:141528-143805 1.0000 100 chrIII:161940-163825 1.0000 100 chrVII:255219-255687 1.0000 100 chrII:197184-197847 1.0000 100 chrXIV:585420-586525 1.0000 100 chrIV:1174517-1174839 1.0000 100 chrIV:433936-434547 1.0000 100 chrXV:710006-710489 1.0000 100 chrX:227773-227873 1.0000 100 chrXVI:172941-174084 1.0000 100 chrXIV:215804-217531 1.0000 100 chrXV:438143-439020 1.0000 100 chrIV:992600-993218 1.0000 100 chrX:435664-435764 1.0000 100 chrXII:962862-963535 1.0000 100 chrII:592348-592786 1.0000 100 chrV:141109-141387 1.0000 100 chrIX:142061-143027 1.0000 100 chrVIII:455582-455829 1.0000 100 chrV:56319-56538 1.0000 100 chrIV:1236382-1238916 1.0000 100 chrXI:432643-432999 1.0000 100 chrX:156338-156438 1.0000 100 chrVII:535454-535861 1.0000 100 chrIV:1461391-1462450 1.0000 100 chrXIII:767734-768611 1.0000 100 chrIV:132531-133523 1.0000 100 chrXIII:480144-480920 1.0000 100 chrV:423523-425319 1.0000 100 chrXIII:411644-412555 1.0000 100 chrVIII:17725-18288 1.0000 100 chrVII:701856-702668 1.0000 100 chrV:51863-52883 1.0000 100 chrXVI:404501-405785 1.0000 100 chrV:434382-436028 1.0000 100 chrVI:148007-148459 1.0000 100 chrI:30083-30972 1.0000 100 chrVII:438975-440102 1.0000 100 chrII:544474-544788 1.0000 100 chrXVI:678912-679815 1.0000 100 chrXI:489979-491595 1.0000 100 chrXV:281667-282689 1.0000 100 chrX:622837-622937 1.0000 100 chrXIV:738568-740087 1.0000 100 chrV:487029-487612 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--YAP1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--YAP1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--YAP1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.313 C 0.187 G 0.187 T 0.313 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--YAP1/background): A 0.319 C 0.181 G 0.181 T 0.319 ******************************************************************************** ******************************************************************************** MOTIF MBSGGRATCGAACCSVBGAYC MEME-1 width = 21 sites = 77 llr = 1338 E-value = 8.5e-254 ******************************************************************************** -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVBGAYC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3:12:65:::aa:::3126:: pos.-specific C 444:::1:8:::a8532:166 probability G 2358a42::a::::4448112 matrix T 12::::2a2::::21:3:232 bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 * * **** Relative 1.5 * ******* * Entropy 1.2 ** ******* * (25.1 bits) 1.0 **** ******** * * 0.7 ***** ******** * ** 0.5 ****** *********** ** 0.2 ****** ************** 0.0 --------------------- Multilevel CCGGGAATCGAACCCGGGACC consensus AGC GG T GCTATT sequence T AC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVBGAYC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIII:123407-123761 + 51 2.16e-13 GTGGGGCGAG CCGGGACTCGAACCCGGGACC TCCCGCACCC chrXIV:631503-632168 + 69 2.16e-13 TGGGGGCGAG CCGGGACTCGAACCCGGGACC TCCCGCACCC chrXV:281667-282689 - 78 6.03e-12 AG CCCGGAATCGAACCGGGGGCC CAACGATGGC chrIV:992600-993218 - 15 6.03e-12 AGTGCGCAAG CCCGGAATCGAACCGGGGGCC CAACGATGGC chrIV:83319-83816 - 73 6.03e-12 GCGCAAG CCCGGAATCGAACCGGGGGCC CAACGATGGC chrVI:162014-162471 - 78 6.03e-12 AG CCCGGAATCGAACCGGGGGCC CAACGATGGC chrVII:930757-931214 + 26 6.03e-12 AATGCGCAAG CCCGGAATCGAACCGGGGGCC CAACGATGGC chrVI:180638-181363 + 32 6.03e-12 ACTGCGCAAG CCCGGAATCGAACCGGGGGCC CAACGATGGC chrXV:594113-594654 + 29 3.73e-11 GATGCGCAAG CCGGGAATCGAACCCGGGCCT CATGCTTGGG chrV:487029-487612 + 69 9.09e-11 TACTCCGATA CGGGGAGTCGAACCCCGGTCT CCACGGTGAA chrV:311760-312288 + 57 9.09e-11 ATTGGACGCA ACCGGAATCGAACCGATGACC TCTTCCTTGC chrIX:197300-197981 - 45 9.09e-11 AACTCCGAAG CGGGGAGTCGAACCCCGGTCT CCACGGTGAG chrVII:541620-542165 - 51 9.09e-11 CACTCCGATA CGGGGAGTCGAACCCCGGTCT CCACGGTGAA chrXV:854007-854405 + 39 9.09e-11 ATTGGACGCA ACCGGAATCGAACCGATGACC TCTTCCTTGC chrV:354669-355361 - 12 9.09e-11 TACTCCGATA CGGGGAGTCGAACCCCGGTCT CCACGGTGAA chrXVI:209561-210911 + 14 9.09e-11 AACTCCGATA CGGGGAGTCGAACCCCGGTCT CCACGGTGAA chrIX:370145-370778 - 49 9.09e-11 TACTCCGATA CGGGGAGTCGAACCCCGGTCT CCACGGTGAA chrII:197184-197847 - 74 1.96e-10 GTCTCT AGCGGGATCGAACCGCTGATC CCCGCGTTAT chrXIV:569639-570052 + 80 1.96e-10 AATGGTCTCT AGCGGGATCGAACCGCTGATC chrXIV:602127-602538 - 75 1.96e-10 TCTCT AGCGGGATCGAACCGCTGATC CCCGCGTTAT chrV:442978-443487 + 28 1.96e-10 TATGGTCTCT AGCGGGATCGAACCGCTGATC CCCGCGTTAT chrXVI:880040-880556 + 56 1.96e-10 AATGGTCTCT AGCGGGATCGAACCGCTGATC CCCGCGTTAT chrXI:202856-203328 - 1 4.10e-10 AAAGCCCTGT AGGGGGCTCGAACCCCTAACC chrV:135161-135696 + 55 4.10e-10 AAAGCCCTGT AGGGGGCTCGAACCCCTAACC TTATGATTAA chrVII:121972-122690 - 32 4.10e-10 ATAGCCCTGT AGGGGGCTCGAACCCCTAACC TTATGATTAA chrVI:226440-226904 + 74 4.10e-10 TAAGCCCTGT AGGGGGCTCGAACCCCTAACC TTATGA chrVII:185312-186085 + 74 4.10e-10 ATAGCCCTGT AGGGGGCTCGAACCCCTAACC TTATGA chrIV:802562-802992 + 12 7.96e-10 AGAGGTCCTA CCCGGATTCGAACCGGGGTTG TCCGGATCAA chrV:130814-131409 + 29 7.96e-10 ATAGGTCTTA CCCGGATTCGAACCGGGGTTG TTCGGATCAA chrIII:168082-168633 + 2 7.96e-10 A CCCGGATTCGAACCGGGGTTG TCCGGATCAA chrXIV:546974-547439 - 12 1.03e-09 ACGGGGCGAG CTGGGAATTGAACCCAGGGCC TCTCGCATGC chrVII:412118-412567 + 10 1.90e-09 TTGATTTCG CCCAGGATCGAACTGGGGACG TTCTGCGTGT chrXI:307953-308407 + 22 1.90e-09 ATTGATTTCG CCCAGGATCGAACTGGGGACG TTCTGCGTGT chrXI:379476-379962 - 56 1.90e-09 ATTGATTTCG CCCAGGATCGAACTGGGGACG TTCTGCGTGT chrXIII:372143-372739 + 62 1.90e-09 AATGATTTCG CCCAGGATCGAACTGGGGACG TTCTGCGTGT chrIV:410192-410745 - 5 2.39e-09 TTTGGACGAG TCCGGAATCGAACCGGAGACC TCTC chrXVI:856770-857124 - 49 2.39e-09 AATGGACGAG TCCGGAATCGAACCGGAGACC TCTCCCATGC chrXII:656686-657148 + 75 2.39e-09 CTTGGACGAG TCCGGAATCGAACCGGAGACC TCTCC chrX:197118-197218 + 14 2.39e-09 ATTGGACGAG TCCGGAATCGAACCGGAGACC TCTCCCATGC chrXI:46348-47204 + 17 4.19e-09 AATGCCCTCT GTGGGAATTGAACCCACGATC CCCGCATTAC chrVII:531520-531810 - 38 5.76e-09 ATCTCCGCGA CGGGGAATTGAACCCCGATCT GGCACGCGAC chrII:405558-406394 - 77 5.76e-09 CGA CGGGGAATTGAACCCCGATCT GGCACGCGAC chrIX:336143-336670 + 1 5.76e-09 . CGGGGAATTGAACCCCGATCT GGCACGCGAC chrVII:405296-405790 - 20 5.76e-09 AGCACTCACG ATGGGGGTCGAACCCATAATC TTCTGATTAG chrX:355168-355268 - 23 5.76e-09 AGCACTCACG ATGGGGGTCGAACCCATAATC TTCTGATTAG chrXI:162233-162788 + 35 5.76e-09 AACACTCACG ATGGGGGTCGAACCCATAATC TTCTGATTAG chrIX:323975-324611 + 68 5.76e-09 ATCTCCGCGA CGGGGAATTGAACCCCGATCT GGCACGCGAC chrX:541331-541431 - 14 5.76e-09 ATCTCCGCGA CGGGGAATTGAACCCCGATCT GGCACGCGAC chrX:374163-374263 + 16 5.76e-09 AGCACTCACG ATGGGGGTCGAACCCATAATC TTCTGATTAG chrVII:828518-828985 + 30 5.76e-09 AGCACTCACG ATGGGGGTCGAACCCATAATC TTCTGATTAG chrXIII:131558-132121 + 44 5.76e-09 AGCACTCACG ATGGGGGTCGAACCCATAATC TTCTGATTAG chrXII:426895-427458 - 49 5.76e-09 TTCTCCGCGA CGGGGAATTGAACCCCGATCT GGCACGCGAC chrIV:884172-884779 - 40 9.57e-09 AGTGCTCGAG GTGGGGTTTGAACCCACGACG GTCGCGTTGC chrII:266167-266739 - 19 2.89e-08 AATGCTTCCA ATCGGATTTGAACCGATGATC TCCACATTAC chrXIV:104635-105147 - 8 2.89e-08 TATGCTTCCA ATCGGATTTGAACCGATGATC TCCACAT chrXV:113591-114200 - 1 2.89e-08 AATGCTTCCA ATCGGATTTGAACCGATGATC chrIX:174830-175351 - 35 2.89e-08 ATTGCTTCCA ATCGGATTTGAACCGATGATC TCCACATTAC chrVII:706898-707319 + 58 6.03e-08 AAAGCTCGCA CTCAGGATCGAACTAAGGACC AACAGATTTG chrXVI:559911-560482 + 60 7.59e-08 AATGCGAATT CTGTGGATCGAACACAGGACC TCCAGATAAC chrIV:1095046-1095696 + 57 7.59e-08 AATGCGAACT CTGTGGATCGAACACAGGACC TCCAGATATC chrVI:167254-167708 - 66 7.59e-08 TATCTCCCGG GGGCGAGTCGAACGCCCGATC TCAAGATTTC chrVI:210447-210901 + 3 7.59e-08 GG GGGCGAGTCGAACGCCCGATC TCAAGATTTC chrX:390834-390934 + 30 8.18e-08 TATGCTCCAG GGGAGGTTCGAACTCTCGACC TTCAGATTAT chrXIII:572628-573225 + 15 8.18e-08 TGTGCTCCAG GGGAGGTTCGAACTCTCGACC TTCAGATTAT chrVII:878052-879328 + 78 8.18e-08 AATGAAACGG ACAGGAATTGAACCTGCAACC CT chrII:9386-9892 - 49 1.35e-07 ACTGAAGGAT GCGAGGTTCGAACTCGCGCGG ACAACCGTCC chrXIV:102484-103046 - 46 1.35e-07 AACGACCCCA GTGAGGGTTGAACTCACGATC TTGCGATTAA chrXII:975724-976302 + 28 1.35e-07 AACGACCCCA GTGAGGGTTGAACTCACGATC TTGCGATTAA chrVII:730953-731423 - 44 1.35e-07 AACGACCCCA GTGAGGGTTGAACTCACGATC TTGCGATTAA chrII:347403-347981 - 16 1.35e-07 ACTGAAGGAT GCGAGGTTCGAACTCGCGCGG ACAACCGTCC chrII:226878-227370 - 54 1.77e-07 AACGACAACT GCAGGACTCGAACCTGCGCGG GCAAAGCCCA chrXII:167641-168255 + 54 1.77e-07 AACGACAACT GCAGGACTCGAACCTGCGCGG GCAAAGCCCA chrI:182338-182722 + 50 1.77e-07 AACGACAACT GCAGGACTCGAACCTGCGCGG GCAAAGCCCA chrVIII:132670-133426 + 36 1.77e-07 ATCGACAACT GCAGGACTCGAACCTGCGCGG GCAAAGCCCA chrVII:110426-110919 + 11 4.18e-07 ATTGCCATCT CCTAGAATCGAACCAGGGTTT CATCGGCCAC chrVIII:62506-63080 - 55 4.18e-07 AATGCCATCT CCTAGAATCGAACCAGGGTTT CATCGGCCAC chrXV:274530-275019 - 21 8.29e-07 TGCGTCACAG ACAGGATTCGAACCTGCGCAG GTAAAACCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVBGAYC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123407-123761 2.2e-13 50_[+1]_29 chrXIV:631503-632168 2.2e-13 68_[+1]_11 chrXV:281667-282689 6e-12 77_[-1]_2 chrIV:992600-993218 6e-12 14_[-1]_65 chrIV:83319-83816 6e-12 72_[-1]_7 chrVI:162014-162471 6e-12 77_[-1]_2 chrVII:930757-931214 6e-12 25_[+1]_54 chrVI:180638-181363 6e-12 31_[+1]_48 chrXV:594113-594654 3.7e-11 28_[+1]_51 chrV:487029-487612 9.1e-11 68_[+1]_11 chrV:311760-312288 9.1e-11 56_[+1]_23 chrIX:197300-197981 9.1e-11 44_[-1]_35 chrVII:541620-542165 9.1e-11 50_[-1]_29 chrXV:854007-854405 9.1e-11 38_[+1]_41 chrV:354669-355361 9.1e-11 11_[-1]_68 chrXVI:209561-210911 9.1e-11 13_[+1]_66 chrIX:370145-370778 9.1e-11 48_[-1]_31 chrII:197184-197847 2e-10 73_[-1]_6 chrXIV:569639-570052 2e-10 79_[+1] chrXIV:602127-602538 2e-10 74_[-1]_5 chrV:442978-443487 2e-10 27_[+1]_52 chrXVI:880040-880556 2e-10 55_[+1]_24 chrXI:202856-203328 4.1e-10 [-1]_79 chrV:135161-135696 4.1e-10 54_[+1]_25 chrVII:121972-122690 4.1e-10 31_[-1]_48 chrVI:226440-226904 4.1e-10 73_[+1]_6 chrVII:185312-186085 4.1e-10 73_[+1]_6 chrIV:802562-802992 8e-10 11_[+1]_68 chrV:130814-131409 8e-10 28_[+1]_51 chrIII:168082-168633 8e-10 1_[+1]_78 chrXIV:546974-547439 1e-09 11_[-1]_68 chrVII:412118-412567 1.9e-09 9_[+1]_70 chrXI:307953-308407 1.9e-09 21_[+1]_58 chrXI:379476-379962 1.9e-09 55_[-1]_24 chrXIII:372143-372739 1.9e-09 61_[+1]_18 chrIV:410192-410745 2.4e-09 4_[-1]_75 chrXVI:856770-857124 2.4e-09 48_[-1]_31 chrXII:656686-657148 2.4e-09 74_[+1]_5 chrX:197118-197218 2.4e-09 13_[+1]_66 chrXI:46348-47204 4.2e-09 16_[+1]_63 chrVII:531520-531810 5.8e-09 37_[-1]_42 chrII:405558-406394 5.8e-09 76_[-1]_3 chrIX:336143-336670 5.8e-09 [+1]_79 chrVII:405296-405790 5.8e-09 19_[-1]_60 chrX:355168-355268 5.8e-09 22_[-1]_57 chrXI:162233-162788 5.8e-09 34_[+1]_45 chrIX:323975-324611 5.8e-09 67_[+1]_12 chrX:541331-541431 5.8e-09 13_[-1]_66 chrX:374163-374263 5.8e-09 15_[+1]_64 chrVII:828518-828985 5.8e-09 29_[+1]_50 chrXIII:131558-132121 5.8e-09 43_[+1]_36 chrXII:426895-427458 5.8e-09 48_[-1]_31 chrIV:884172-884779 9.6e-09 39_[-1]_40 chrII:266167-266739 2.9e-08 18_[-1]_61 chrXIV:104635-105147 2.9e-08 7_[-1]_72 chrXV:113591-114200 2.9e-08 [-1]_79 chrIX:174830-175351 2.9e-08 34_[-1]_45 chrVII:706898-707319 6e-08 57_[+1]_22 chrXVI:559911-560482 7.6e-08 59_[+1]_20 chrIV:1095046-1095696 7.6e-08 56_[+1]_23 chrVI:167254-167708 7.6e-08 65_[-1]_14 chrVI:210447-210901 7.6e-08 2_[+1]_77 chrX:390834-390934 8.2e-08 29_[+1]_50 chrXIII:572628-573225 8.2e-08 14_[+1]_65 chrVII:878052-879328 8.2e-08 77_[+1]_2 chrII:9386-9892 1.4e-07 48_[-1]_31 chrXIV:102484-103046 1.4e-07 45_[-1]_34 chrXII:975724-976302 1.4e-07 27_[+1]_52 chrVII:730953-731423 1.4e-07 43_[-1]_36 chrII:347403-347981 1.4e-07 15_[-1]_64 chrII:226878-227370 1.8e-07 53_[-1]_26 chrXII:167641-168255 1.8e-07 53_[+1]_26 chrI:182338-182722 1.8e-07 49_[+1]_30 chrVIII:132670-133426 1.8e-07 35_[+1]_44 chrVII:110426-110919 4.2e-07 10_[+1]_69 chrVIII:62506-63080 4.2e-07 54_[-1]_25 chrXV:274530-275019 8.3e-07 20_[-1]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVBGAYC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MBSGGRATCGAACCSVBGAYC width=21 seqs=77 chrIII:123407-123761 ( 51) CCGGGACTCGAACCCGGGACC 1 chrXIV:631503-632168 ( 69) CCGGGACTCGAACCCGGGACC 1 chrXV:281667-282689 ( 78) CCCGGAATCGAACCGGGGGCC 1 chrIV:992600-993218 ( 15) CCCGGAATCGAACCGGGGGCC 1 chrIV:83319-83816 ( 73) CCCGGAATCGAACCGGGGGCC 1 chrVI:162014-162471 ( 78) CCCGGAATCGAACCGGGGGCC 1 chrVII:930757-931214 ( 26) CCCGGAATCGAACCGGGGGCC 1 chrVI:180638-181363 ( 32) CCCGGAATCGAACCGGGGGCC 1 chrXV:594113-594654 ( 29) CCGGGAATCGAACCCGGGCCT 1 chrV:487029-487612 ( 69) CGGGGAGTCGAACCCCGGTCT 1 chrV:311760-312288 ( 57) ACCGGAATCGAACCGATGACC 1 chrIX:197300-197981 ( 45) CGGGGAGTCGAACCCCGGTCT 1 chrVII:541620-542165 ( 51) CGGGGAGTCGAACCCCGGTCT 1 chrXV:854007-854405 ( 39) ACCGGAATCGAACCGATGACC 1 chrV:354669-355361 ( 12) CGGGGAGTCGAACCCCGGTCT 1 chrXVI:209561-210911 ( 14) CGGGGAGTCGAACCCCGGTCT 1 chrIX:370145-370778 ( 49) CGGGGAGTCGAACCCCGGTCT 1 chrII:197184-197847 ( 74) AGCGGGATCGAACCGCTGATC 1 chrXIV:569639-570052 ( 80) AGCGGGATCGAACCGCTGATC 1 chrXIV:602127-602538 ( 75) AGCGGGATCGAACCGCTGATC 1 chrV:442978-443487 ( 28) AGCGGGATCGAACCGCTGATC 1 chrXVI:880040-880556 ( 56) AGCGGGATCGAACCGCTGATC 1 chrXI:202856-203328 ( 1) AGGGGGCTCGAACCCCTAACC 1 chrV:135161-135696 ( 55) AGGGGGCTCGAACCCCTAACC 1 chrVII:121972-122690 ( 32) AGGGGGCTCGAACCCCTAACC 1 chrVI:226440-226904 ( 74) AGGGGGCTCGAACCCCTAACC 1 chrVII:185312-186085 ( 74) AGGGGGCTCGAACCCCTAACC 1 chrIV:802562-802992 ( 12) CCCGGATTCGAACCGGGGTTG 1 chrV:130814-131409 ( 29) CCCGGATTCGAACCGGGGTTG 1 chrIII:168082-168633 ( 2) CCCGGATTCGAACCGGGGTTG 1 chrXIV:546974-547439 ( 12) CTGGGAATTGAACCCAGGGCC 1 chrVII:412118-412567 ( 10) CCCAGGATCGAACTGGGGACG 1 chrXI:307953-308407 ( 22) CCCAGGATCGAACTGGGGACG 1 chrXI:379476-379962 ( 56) CCCAGGATCGAACTGGGGACG 1 chrXIII:372143-372739 ( 62) CCCAGGATCGAACTGGGGACG 1 chrIV:410192-410745 ( 5) TCCGGAATCGAACCGGAGACC 1 chrXVI:856770-857124 ( 49) TCCGGAATCGAACCGGAGACC 1 chrXII:656686-657148 ( 75) TCCGGAATCGAACCGGAGACC 1 chrX:197118-197218 ( 14) TCCGGAATCGAACCGGAGACC 1 chrXI:46348-47204 ( 17) GTGGGAATTGAACCCACGATC 1 chrVII:531520-531810 ( 38) CGGGGAATTGAACCCCGATCT 1 chrII:405558-406394 ( 77) CGGGGAATTGAACCCCGATCT 1 chrIX:336143-336670 ( 1) CGGGGAATTGAACCCCGATCT 1 chrVII:405296-405790 ( 20) ATGGGGGTCGAACCCATAATC 1 chrX:355168-355268 ( 23) ATGGGGGTCGAACCCATAATC 1 chrXI:162233-162788 ( 35) ATGGGGGTCGAACCCATAATC 1 chrIX:323975-324611 ( 68) CGGGGAATTGAACCCCGATCT 1 chrX:541331-541431 ( 14) CGGGGAATTGAACCCCGATCT 1 chrX:374163-374263 ( 16) ATGGGGGTCGAACCCATAATC 1 chrVII:828518-828985 ( 30) ATGGGGGTCGAACCCATAATC 1 chrXIII:131558-132121 ( 44) ATGGGGGTCGAACCCATAATC 1 chrXII:426895-427458 ( 49) CGGGGAATTGAACCCCGATCT 1 chrIV:884172-884779 ( 40) GTGGGGTTTGAACCCACGACG 1 chrII:266167-266739 ( 19) ATCGGATTTGAACCGATGATC 1 chrXIV:104635-105147 ( 8) ATCGGATTTGAACCGATGATC 1 chrXV:113591-114200 ( 1) ATCGGATTTGAACCGATGATC 1 chrIX:174830-175351 ( 35) ATCGGATTTGAACCGATGATC 1 chrVII:706898-707319 ( 58) CTCAGGATCGAACTAAGGACC 1 chrXVI:559911-560482 ( 60) CTGTGGATCGAACACAGGACC 1 chrIV:1095046-1095696 ( 57) CTGTGGATCGAACACAGGACC 1 chrVI:167254-167708 ( 66) GGGCGAGTCGAACGCCCGATC 1 chrVI:210447-210901 ( 3) GGGCGAGTCGAACGCCCGATC 1 chrX:390834-390934 ( 30) GGGAGGTTCGAACTCTCGACC 1 chrXIII:572628-573225 ( 15) GGGAGGTTCGAACTCTCGACC 1 chrVII:878052-879328 ( 78) ACAGGAATTGAACCTGCAACC 1 chrII:9386-9892 ( 49) GCGAGGTTCGAACTCGCGCGG 1 chrXIV:102484-103046 ( 46) GTGAGGGTTGAACTCACGATC 1 chrXII:975724-976302 ( 28) GTGAGGGTTGAACTCACGATC 1 chrVII:730953-731423 ( 44) GTGAGGGTTGAACTCACGATC 1 chrII:347403-347981 ( 16) GCGAGGTTCGAACTCGCGCGG 1 chrII:226878-227370 ( 54) GCAGGACTCGAACCTGCGCGG 1 chrXII:167641-168255 ( 54) GCAGGACTCGAACCTGCGCGG 1 chrI:182338-182722 ( 50) GCAGGACTCGAACCTGCGCGG 1 chrVIII:132670-133426 ( 36) GCAGGACTCGAACCTGCGCGG 1 chrVII:110426-110919 ( 11) CCTAGAATCGAACCAGGGTTT 1 chrVIII:62506-63080 ( 55) CCTAGAATCGAACCAGGGTTT 1 chrXV:274530-275019 ( 21) ACAGGATTCGAACCTGCGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVBGAYC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.192 E= 8.5e-254 -3 129 11 -262 -1291 120 90 -37 -203 106 152 -362 -81 -280 208 -362 -1291 -1291 247 -1291 90 -1291 115 -1291 55 -34 29 -92 -1291 -1291 -1291 165 -1291 211 -1291 -53 -1291 -1291 247 -1291 165 -1291 -1291 -1291 165 -1291 -1291 -1291 -1291 247 -1291 -1291 -362 213 -280 -103 -303 152 101 -203 -23 79 111 -362 -262 29 129 -16 -45 -1291 208 -1291 87 -80 -99 -53 -461 166 -121 8 -1291 176 11 -71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVBGAYC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 77 E= 8.5e-254 0.311688 0.441558 0.194805 0.051948 0.000000 0.415584 0.337662 0.246753 0.077922 0.376623 0.519481 0.025974 0.181818 0.025974 0.766234 0.025974 0.000000 0.000000 1.000000 0.000000 0.597403 0.000000 0.402597 0.000000 0.467532 0.142857 0.220779 0.168831 0.000000 0.000000 0.000000 1.000000 0.000000 0.779221 0.000000 0.220779 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.025974 0.792208 0.025974 0.155844 0.038961 0.519481 0.363636 0.077922 0.272727 0.311688 0.389610 0.025974 0.051948 0.220779 0.441558 0.285714 0.233766 0.000000 0.766234 0.000000 0.584416 0.103896 0.090909 0.220779 0.012987 0.571429 0.077922 0.337662 0.000000 0.610390 0.194805 0.194805 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRATCGAACCSVBGAYC MEME-1 regular expression -------------------------------------------------------------------------------- [CA][CGT][GC]GG[AG][AG]T[CT]GAACC[CG][GCA][GTC][GA][AT][CT]C -------------------------------------------------------------------------------- Time 352.24 secs. ******************************************************************************** ******************************************************************************** MOTIF CSRDSSCTTWWMCCACTRVRCCAHDNRVSC MEME-2 width = 30 sites = 58 llr = 1054 E-value = 1.4e-174 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSRDSSCTTWWMCCACTRVRCCAHDNRVSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2:5221211365:2a::534::a33345:1 pos.-specific C 5312346221:4a6:9:13:a8:5121359 probability G 252254211::1:2:::356::::43434: matrix T 1224:115664::1:1a1:::2:3221:1: bits 2.5 * * 2.2 * * 2.0 * * * * 1.7 * ** * * * Relative 1.5 * *** *** * Entropy 1.2 * *** **** * (26.2 bits) 1.0 * *** **** ** 0.7 * *** ***** ***** ** 0.5 ** *** ******** ****** **** 0.2 *** ********************* **** 0.0 ------------------------------ Multilevel CGATGGCTTTAACCACTAGGCCACGGGACC consensus GCGACC CCATC A GAA T AAAACG sequence TGA C TTC G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSRDSSCTTWWMCCACTRVRCCAHDNRVSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrII:197184-197847 - 29 9.57e-14 GTTATTAGCA CGGTGCCTTAACCAACTGGGCCAAGAGACC TTGATTACTG chrXIV:602127-602538 - 30 9.57e-14 GTTATTAGCA CGGTGCCTTAACCAACTGGGCCAAGAGACC ATTGTTATCT chrV:442978-443487 + 64 9.57e-14 GTTATTAGCA CGGTGCCTTAACCAACTGGGCCAAGAGACC AAATTTT chrXVI:856770-857124 - 5 2.60e-12 CCATGCTAAG GGAGCGCGCTACCGACTACGCCACACGCCC GAAT chrX:197118-197218 + 49 2.60e-12 CCATGCTAAG GGAGCGCGCTACCGACTACGCCACACGCCC TAATATTATT chrVII:823267-823699 - 49 3.24e-11 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC ACTCTTATTG chrVII:412118-412567 + 46 3.24e-11 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC AGTTTTTTGA chrXIII:420304-421023 + 19 3.24e-11 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC TGTTATTTGT chrXI:307953-308407 + 58 3.24e-11 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC ACTTAATTGT chrXI:379476-379962 - 11 3.24e-11 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC TATTAATCTG chrXV:663389-664406 + 9 3.24e-11 TGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC ACTATTTGTT chrXV:281667-282689 - 36 1.27e-10 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC GCTTTCATGT chrXV:226426-226954 + 12 1.27e-10 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TGAATTTCTT chrIV:83319-83816 - 31 1.27e-10 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TAAGTGAACT chrVI:162014-162471 - 36 1.27e-10 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTGTTTTCTT chrXIII:183753-184162 + 32 1.27e-10 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC GATCTTTATT chrVII:930757-931214 + 59 1.27e-10 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTACTGATTA chrVI:180638-181363 + 65 1.27e-10 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTATTT chrX:617780-617880 - 5 1.45e-10 CACCTAAATC TGACGCCTTAAACCACTCGGCCAAACTCCC ATTG chrXII:731930-732254 - 48 1.45e-10 CACCTAAATC TGACGCCTTAAACCACTCGGCCAAACTCCC ATTGTATGTT chrXIV:560073-561439 + 30 3.06e-10 CATTACTAGT GTGGCGCCTTACCAACTTGGCCATAGAAGC CCGTTATTAC chrX:58788-58888 + 7 3.06e-10 ACTAGT GTGGCGCCTTACCAACTTGGCCATAGAAGC TTCTATTTTA chrXV:228036-228615 - 56 3.45e-10 ATTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC TAATATTTTA chrIII:127547-127860 - 63 3.45e-10 TAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC ATTTTATCTT chrXIV:102484-103046 - 1 3.45e-10 ATTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC chrXV:487194-487710 - 37 3.45e-10 ATTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC TAACTTTGTT chrXII:975724-976302 + 64 3.45e-10 ATTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC TTTTATT chrII:226878-227370 - 1 3.89e-10 GATTTCTAAT CTTTCGCCTTAACCACTCGGCCAAGTTGCC chrIV:980837-981248 + 34 3.89e-10 GATTTCTAAT CTTTCGCCTTAACCACTCGGCCAAGTTGCC TCAATTTACA chrXII:605156-605657 + 47 4.38e-10 TGCTATAAGC ACGAAGCTCTAACCACTGAGCTACACGAGC ATTTTCGAAA chrIII:227708-228174 - 51 5.53e-10 CCATTCGAGT CTCTCGCCTTAACCACTCGGCCATAGTGCC ATTTCGATTT chrIV:488500-489224 + 29 7.78e-10 CGTGTAAAGG CGACGTCTTGAACCACTGGACCATTGGACC GGAAACCCAT chrXV:300877-301368 - 25 9.72e-10 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC GATCTTTTCT chrXIII:195918-196404 + 30 9.72e-10 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC TTGTGAACTT chrXII:628150-628632 - 42 3.76e-09 TTCTTGAATC AGGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATTTGT chrXIII:504626-505230 - 17 3.76e-09 TTCTTGAATC AGGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATCTGT chrX:390834-390934 + 65 5.04e-09 GATTATGAGA CTGACGCTCTTCCTACTGAGCTACTGAAGC ACTATT chrXIII:572628-573225 + 50 5.04e-09 GATTATGAGA CTGACGCTCTTCCTACTGAGCTACTGAAGC TGTCTGTTAT chrIV:1175581-1176082 - 48 5.04e-09 GATTATGAGA CTGACGCTCTTCCTACTGAGCTACTGAAGC TTTGTTTTGT chrXIII:747754-748182 + 16 1.06e-08 TGATTAGAAG TCAGACGCGTTGCCATTACGCCACGCGAGC TAGTCATATG chrXI:162233-162788 + 69 1.06e-08 TGATTAGAAG TCAGACGCGTTGCCATTACGCCACGCGAGC TA chrX:374163-374263 + 50 1.06e-08 TGATTAGAAG TCAGACGCGTTGCCATTACGCCACGCGAGC TACTATTTGT chrVII:828518-828985 + 64 1.06e-08 TGATTAGAAG TCAGACGCGTTGCCATTACGCCACGCGAGC TACTGTT chrIV:802562-802992 + 46 2.50e-08 GGATCAAAAC CGAAAGTGATAACCACTACACTATAGGACC GACAATTCAT chrIII:168082-168633 + 36 2.50e-08 GGATCAAAAC CGAAAGTGATAACCACTACACTATAGGACC AGGACTTCTT chrIV:359254-359865 - 68 2.94e-08 AGC CGAACGCTCTACCAACTGAGCTAACAAGGA TGAGTTCTTC chrVII:115280-115760 - 18 2.94e-08 GCTTAAAAGC CGAACGCTCTACCAACTGAGCTAACAAGGA TGAGTTCTTC chrXI:46348-47204 + 51 5.10e-08 GCATTACGAG TGCGATGCCTTACCACTTGGCCAAAAGGGC TGAGTAATTT chrII:642883-643252 + 32 5.94e-08 AGATTTGCAA TCTGCTGCGCTACCACTGCGCCATACGAGC TTTCTATTAC chrV:130814-131409 + 63 6.40e-08 GGATCAAAAC CGAAAGTGATAACCACTACACTATAAAACC TCTTAATT chrII:350519-351139 - 48 6.40e-08 GGATCAAAAC CGAAAGTGATAACCACTACACTATAAAACC CTTTTATTGA chrXVI:581703-582401 - 60 9.23e-08 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TCTTTTGTTG chrXIII:352109-352500 - 26 1.14e-07 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAATCCGC TTATATTCAT chrX:538377-538477 - 44 1.50e-07 TCCTTAGGAG GGAGACGCGTTACCATTACGCCAACGGAAC CAACTTGGTT chrXV:710006-710489 - 4 1.96e-07 GGGTTATGAG CCCTGCGCGCTTCCACTGCGCCACGGCGCT GCT chrX:517683-517783 + 6 1.96e-07 ATGAG CCCTGCGCGCTTCCACTGCGCCACGGCGCT TAACTTTTAT chrXV:594113-594654 + 63 1.96e-07 GCTTGGGAAG CATAAATTCTAACCACTGAACCACTTGCGC GTTTCAAT chrVII:73691-74236 - 26 1.53e-06 GTTGTACTGA ACTTCAATTTTACAACTAAACTATGAAGCA AGTATCTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSRDSSCTTWWMCCACTRVRCCAHDNRVSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:197184-197847 9.6e-14 28_[-2]_42 chrXIV:602127-602538 9.6e-14 29_[-2]_41 chrV:442978-443487 9.6e-14 63_[+2]_7 chrXVI:856770-857124 2.6e-12 4_[-2]_66 chrX:197118-197218 2.6e-12 48_[+2]_22 chrVII:823267-823699 3.2e-11 48_[-2]_22 chrVII:412118-412567 3.2e-11 45_[+2]_25 chrXIII:420304-421023 3.2e-11 18_[+2]_52 chrXI:307953-308407 3.2e-11 57_[+2]_13 chrXI:379476-379962 3.2e-11 10_[-2]_60 chrXV:663389-664406 3.2e-11 8_[+2]_62 chrXV:281667-282689 1.3e-10 35_[-2]_35 chrXV:226426-226954 1.3e-10 11_[+2]_59 chrIV:83319-83816 1.3e-10 30_[-2]_40 chrVI:162014-162471 1.3e-10 35_[-2]_35 chrXIII:183753-184162 1.3e-10 31_[+2]_39 chrVII:930757-931214 1.3e-10 58_[+2]_12 chrVI:180638-181363 1.3e-10 64_[+2]_6 chrX:617780-617880 1.4e-10 4_[-2]_66 chrXII:731930-732254 1.4e-10 47_[-2]_23 chrXIV:560073-561439 3.1e-10 29_[+2]_41 chrX:58788-58888 3.1e-10 6_[+2]_64 chrXV:228036-228615 3.5e-10 55_[-2]_15 chrIII:127547-127860 3.5e-10 62_[-2]_8 chrXIV:102484-103046 3.5e-10 [-2]_70 chrXV:487194-487710 3.5e-10 36_[-2]_34 chrXII:975724-976302 3.5e-10 63_[+2]_7 chrII:226878-227370 3.9e-10 [-2]_70 chrIV:980837-981248 3.9e-10 33_[+2]_37 chrXII:605156-605657 4.4e-10 46_[+2]_24 chrIII:227708-228174 5.5e-10 50_[-2]_20 chrIV:488500-489224 7.8e-10 28_[+2]_42 chrXV:300877-301368 9.7e-10 24_[-2]_46 chrXIII:195918-196404 9.7e-10 29_[+2]_41 chrXII:628150-628632 3.8e-09 41_[-2]_29 chrXIII:504626-505230 3.8e-09 16_[-2]_54 chrX:390834-390934 5e-09 64_[+2]_6 chrXIII:572628-573225 5e-09 49_[+2]_21 chrIV:1175581-1176082 5e-09 47_[-2]_23 chrXIII:747754-748182 1.1e-08 15_[+2]_55 chrXI:162233-162788 1.1e-08 68_[+2]_2 chrX:374163-374263 1.1e-08 49_[+2]_21 chrVII:828518-828985 1.1e-08 63_[+2]_7 chrIV:802562-802992 2.5e-08 45_[+2]_25 chrIII:168082-168633 2.5e-08 35_[+2]_35 chrIV:359254-359865 2.9e-08 67_[-2]_3 chrVII:115280-115760 2.9e-08 17_[-2]_53 chrXI:46348-47204 5.1e-08 50_[+2]_20 chrII:642883-643252 5.9e-08 31_[+2]_39 chrV:130814-131409 6.4e-08 62_[+2]_8 chrII:350519-351139 6.4e-08 47_[-2]_23 chrXVI:581703-582401 9.2e-08 59_[-2]_11 chrXIII:352109-352500 1.1e-07 25_[-2]_45 chrX:538377-538477 1.5e-07 43_[-2]_27 chrXV:710006-710489 2e-07 3_[-2]_67 chrX:517683-517783 2e-07 5_[+2]_65 chrXV:594113-594654 2e-07 62_[+2]_8 chrVII:73691-74236 1.5e-06 25_[-2]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSRDSSCTTWWMCCACTRVRCCAHDNRVSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSRDSSCTTWWMCCACTRVRCCAHDNRVSC width=30 seqs=58 chrII:197184-197847 ( 29) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXIV:602127-602538 ( 30) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrV:442978-443487 ( 64) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXVI:856770-857124 ( 5) GGAGCGCGCTACCGACTACGCCACACGCCC 1 chrX:197118-197218 ( 49) GGAGCGCGCTACCGACTACGCCACACGCCC 1 chrVII:823267-823699 ( 49) AGATGCCATAACCGACTAGACCACGAAACC 1 chrVII:412118-412567 ( 46) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXIII:420304-421023 ( 19) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXI:307953-308407 ( 58) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXI:379476-379962 ( 11) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXV:663389-664406 ( 9) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXV:281667-282689 ( 36) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrXV:226426-226954 ( 12) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrIV:83319-83816 ( 31) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrVI:162014-162471 ( 36) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrXIII:183753-184162 ( 32) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrVII:930757-931214 ( 59) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrVI:180638-181363 ( 65) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrX:617780-617880 ( 5) TGACGCCTTAAACCACTCGGCCAAACTCCC 1 chrXII:731930-732254 ( 48) TGACGCCTTAAACCACTCGGCCAAACTCCC 1 chrXIV:560073-561439 ( 30) GTGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrX:58788-58888 ( 7) GTGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrXV:228036-228615 ( 56) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrIII:127547-127860 ( 63) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrXIV:102484-103046 ( 1) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrXV:487194-487710 ( 37) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrXII:975724-976302 ( 64) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrII:226878-227370 ( 1) CTTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrIV:980837-981248 ( 34) CTTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrXII:605156-605657 ( 47) ACGAAGCTCTAACCACTGAGCTACACGAGC 1 chrIII:227708-228174 ( 51) CTCTCGCCTTAACCACTCGGCCATAGTGCC 1 chrIV:488500-489224 ( 29) CGACGTCTTGAACCACTGGACCATTGGACC 1 chrXV:300877-301368 ( 25) GCGAGAATCATACCACTAGACCACACGCCC 1 chrXIII:195918-196404 ( 30) GCGAGAATCATACCACTAGACCACACGCCC 1 chrXII:628150-628632 ( 42) AGGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrXIII:504626-505230 ( 17) AGGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrX:390834-390934 ( 65) CTGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrXIII:572628-573225 ( 50) CTGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrIV:1175581-1176082 ( 48) CTGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrXIII:747754-748182 ( 16) TCAGACGCGTTGCCATTACGCCACGCGAGC 1 chrXI:162233-162788 ( 69) TCAGACGCGTTGCCATTACGCCACGCGAGC 1 chrX:374163-374263 ( 50) TCAGACGCGTTGCCATTACGCCACGCGAGC 1 chrVII:828518-828985 ( 64) TCAGACGCGTTGCCATTACGCCACGCGAGC 1 chrIV:802562-802992 ( 46) CGAAAGTGATAACCACTACACTATAGGACC 1 chrIII:168082-168633 ( 36) CGAAAGTGATAACCACTACACTATAGGACC 1 chrIV:359254-359865 ( 68) CGAACGCTCTACCAACTGAGCTAACAAGGA 1 chrVII:115280-115760 ( 18) CGAACGCTCTACCAACTGAGCTAACAAGGA 1 chrXI:46348-47204 ( 51) TGCGATGCCTTACCACTTGGCCAAAAGGGC 1 chrII:642883-643252 ( 32) TCTGCTGCGCTACCACTGCGCCATACGAGC 1 chrV:130814-131409 ( 63) CGAAAGTGATAACCACTACACTATAAAACC 1 chrII:350519-351139 ( 48) CGAAAGTGATAACCACTACACTATAAAACC 1 chrXVI:581703-582401 ( 60) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrXIII:352109-352500 ( 26) CTGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrX:538377-538477 ( 44) GGAGACGCGTTACCATTACGCCAACGGAAC 1 chrXV:710006-710489 ( 4) CCCTGCGCGCTTCCACTGCGCCACGGCGCT 1 chrX:517683-517783 ( 6) CCCTGCGCGCTTCCACTGCGCCACGGCGCT 1 chrXV:594113-594654 ( 63) CATAAATTCTAACCACTGAACCACTTGCGC 1 chrVII:73691-74236 ( 26) ACTTCAATTTTACAACTAAACTATGAAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSRDSSCTTWWMCCACTRVRCCAHDNRVSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 11.208 E= 1.4e-174 -89 142 19 -121 -321 61 156 -104 54 -139 42 -51 -40 -7 19 25 -63 61 152 -1250 -221 125 131 -262 -89 170 -22 -189 -163 42 -58 74 -221 42 -39 79 11 -180 -339 88 83 -339 -239 25 54 125 -139 -321 -1250 247 -1250 -1250 -40 161 -22 -262 160 -1250 -239 -1250 -1250 231 -1250 -163 -1250 -1250 -1250 165 54 -58 61 -121 -21 52 136 -1250 25 -1250 178 -1250 -1250 247 -1250 -1250 -1250 213 -1250 -63 165 -1250 -1250 -1250 -30 142 -1250 -30 4 -139 113 -63 -21 42 70 -75 37 -180 131 -189 60 52 52 -1250 -421 142 119 -189 -262 234 -1250 -321 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSRDSSCTTWWMCCACTRVRCCAHDNRVSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 58 E= 1.4e-174 0.172414 0.482759 0.206897 0.137931 0.034483 0.275862 0.534483 0.155172 0.465517 0.068966 0.241379 0.224138 0.241379 0.172414 0.206897 0.379310 0.206897 0.275862 0.517241 0.000000 0.068966 0.431034 0.448276 0.051724 0.172414 0.586207 0.155172 0.086207 0.103448 0.241379 0.120690 0.534483 0.068966 0.241379 0.137931 0.551724 0.344828 0.051724 0.017241 0.586207 0.568966 0.017241 0.034483 0.379310 0.465517 0.431034 0.068966 0.034483 0.000000 1.000000 0.000000 0.000000 0.241379 0.551724 0.155172 0.051724 0.965517 0.000000 0.034483 0.000000 0.000000 0.896552 0.000000 0.103448 0.000000 0.000000 0.000000 1.000000 0.465517 0.120690 0.275862 0.137931 0.275862 0.258621 0.465517 0.000000 0.379310 0.000000 0.620690 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.793103 0.000000 0.206897 1.000000 0.000000 0.000000 0.000000 0.258621 0.482759 0.000000 0.258621 0.327586 0.068966 0.396552 0.206897 0.275862 0.241379 0.293103 0.189655 0.413793 0.051724 0.448276 0.086207 0.482759 0.258621 0.258621 0.000000 0.017241 0.482759 0.413793 0.086207 0.051724 0.913793 0.000000 0.034483 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSRDSSCTTWWMCCACTRVRCCAHDNRVSC MEME-2 regular expression -------------------------------------------------------------------------------- [CG][GC][AGT][TAG][GCA][GC]C[TC][TC][TA][AT][AC]C[CA]ACT[AG][GAC][GA]C[CT]A[CAT][GAT][GAC][GA][ACG][CG]C -------------------------------------------------------------------------------- Time 677.41 secs. ******************************************************************************** ******************************************************************************** MOTIF VARAAAAAAAAARNAAARAWA MEME-3 width = 21 sites = 122 llr = 1210 E-value = 2.0e-063 ******************************************************************************** -------------------------------------------------------------------------------- Motif VARAAAAAAAAARNAAARAWA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 26678989769a636764557 pos.-specific C 3:::1::::::::2:112211 probability G 4141111123::423114112 matrix T 12:1::1::1:::3112:14: bits 2.5 2.2 2.0 1.7 Relative 1.5 * Entropy 1.2 * * ** (14.3 bits) 1.0 * ** * ** 0.7 ******* *** * 0.5 *********** ** * * 0.2 ************* ******* 0.0 --------------------- Multilevel GAAAAAAAAAAAAAAAAAAAA consensus C G GG GTG TGCTG sequence A G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VARAAAAAAAAARNAAARAWA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXII:167641-168255 + 17 5.05e-09 CTCTGCTTCA GAGAAAAAAAAAAGAAAAAGA AAAAATAACG chrXIV:88731-89974 - 14 2.55e-08 AGATGTGAGA GAAAAAAAAAAAAGAAAATAA AGGAAAATGG chrVIII:475260-475907 + 16 3.22e-08 GTCGCATCAC CAAAAAAAAAAAAAAATGATA CAAAGACTGG chrXVI:880040-880556 + 25 4.01e-08 TGTCTCTTTC GAGAAAAAGAAAGAGAAAAGA AATGGTCTCT chrXII:793739-797394 + 5 7.46e-08 TAAA CAAAAAAAAGAAGAAGACAAA CAACTTATTA chrVIII:214159-214324 - 62 7.46e-08 AGATTTCGAA TAAAAAAAAAAAAAAAAGCTA TTCATGGTAC chrXV:254548-255122 + 36 9.03e-08 CAAAAAAAAA ATAAAAAAAAAAGGGAAGAAA TTATATATAA chrXV:903213-905078 + 43 1.29e-07 ACGGGAATAT GCAAAAAAAAAAAGAAAACAA TCCCGCTTTT chrVIII:386280-387030 - 24 2.14e-07 AAGATCATGA GAAAAAAACAAAATAAAGAAA TTAGGAAACT chrII:478966-479524 + 73 2.14e-07 TACGTTACTC GAAACAAAAAAAAAAAAAATG GAAAAAG chrII:625214-625964 - 55 2.96e-07 TCTCACTTTC GTGAAAAAAGAAGCAAACCGA CTTAATGAAT chrXI:432643-432999 + 74 3.48e-07 ACACATCTTT GGAAAAAAAAAAATACAAATA CCCAGT chrVII:535454-535861 - 51 4.08e-07 ACATAGAAAA CAGTAAAAGAAAATAAAAATA ACGTAATATT chrVIII:85009-85505 + 66 4.08e-07 TTTTTCTAAA GAAAAAAAAAAAATTCAAAAA AAATTGATTT chrVII:771766-772392 - 24 4.08e-07 ACAGACGGTG CGAAAGAAAAAAAGAAAAATA CGGCTGAAAT chrV:225435-225679 + 43 4.08e-07 TTTCTTTTTC CAGAAAAAGAAAGAAAAAAGC CGGCGGTCGC chrVIII:379987-382803 + 79 4.08e-07 GGGTAAGCGG GAAAAAAAAAAAGTGTAGGAA C chrVII:1003962-1004403 + 2 4.77e-07 G GAAAAAAAGAAAGGAGAAACA ATAGCAGCAT chrIX:127420-128215 - 54 4.77e-07 GAATGTCGTT CAGGAGAAAGAAACGAAGATA AAACCAAAAA chrVII:878052-879328 + 44 4.77e-07 CTCTTTTTCC GAAAAAAAAAAAATTAAATAA TAAAATGAAA chrXIII:145780-146184 - 72 5.57e-07 AAGGTAAA CAAGAAAAGGAAGAAAAGAAC CCAGAAGGGA chrI:180938-181586 - 41 6.47e-07 TGAAGTATAG GAGGAAAAAGAAAAAATAATG GTTGCTAAGA chrXV:977929-978378 + 46 6.47e-07 ATGAAGTGAA CAAAAAAAAAAAATAATAGTA AAGTAGAGAG chrIX:197300-197981 - 78 7.50e-07 CC CTAAAAAAAAAAGAATAAAAA ATAACTCCGA chrXIII:353407-353900 - 70 7.50e-07 AAAAATGTAT CAAAAAAAAAAAAAATTCAAA AATATTATCA chrXVI:98532-99141 + 72 7.50e-07 CGGCGTTCTA GAAAAAAAAGAAAAATTCAAA AAGTTCTG chrIV:884172-884779 - 67 9.96e-07 GCAAACGCGT GTGAAAAAAAAAGAGAAAGTG CTCGAGGTGG chrXI:518829-519501 + 71 9.96e-07 GGTCGTGCGG AAAAAGAAAAAAGCAGACAAA ACAAAATTT chrVIII:126426-127837 - 6 1.14e-06 GACAGCTGTG TAAAAAAAGGAAGGAAAAGAA ATAGT chrVII:363810-364443 - 66 1.31e-06 AACCTATATA ACGAAAAAAAAAAAAATGAAA ACTGAAGATA chrIX:370145-370778 - 78 1.49e-06 AT GAAAAAAATAAAATAAACATA CTCCGATACG chrIV:540787-542428 + 5 1.92e-06 GAAT AAGAAAAAAGAAAATCAGCAA GAATGACGCG chrXI:578819-579407 + 30 1.92e-06 CGTTCAATGC TAAAGAAAAAAAATGAAAATA AGTTTCAATT chrXV:729062-730108 + 18 2.18e-06 ATGGAAGAAC AAGACAAAGAAAGAGAAACAG AAGAAGCAAA chrXI:219419-220083 + 23 2.18e-06 CATTTCGACA GAAACAAAAAAAGCATGGAAA AACGAATGGA chrVII:574652-575849 - 49 2.47e-06 CAGTGGAAAA GAGGAAAAGAAAAAAAAATAC GAAAACAGTT chrIX:96775-97445 - 1 2.80e-06 CGGAAGGAAA CTGAAAAGAAAAAAAAAGGAA chrXV:43184-43873 + 71 2.80e-06 ATCTTCCGTG GAAAAAAAGGAAAAAGTCCGA TCAATATTG chrXII:1002041-1002667 - 73 2.80e-06 GAAGCAA GAAAGAAAAGAAATAGAGTAA AAAAGAGAAA chrXII:151028-151509 + 3 3.16e-06 TA AAAGAAAAGGAAAGGAAGTAG ATGATGGCAA chrIV:1301865-1302596 - 33 3.16e-06 TTTGCTGCAA CAGTAAAAAAAAAGAATATAA CGTGAAGTAA chrXIII:131558-132121 + 18 3.16e-06 TAGCATATTC AAAAAAGAAGAAACAAAGCAC TCACGATGGG chrVIII:384099-385838 + 25 3.57e-06 TAATGTATTC TGAAAAAAAAAAAGAGAACTG TGAACAATGC chrIV:892421-892690 + 76 3.57e-06 ATGGAATTTT CTAGAAGAAAAAACAAAGAAG CCTC chrIV:1012798-1013672 + 44 4.01e-06 TGTATTTTAA GCGAAGAAAAAAGTACAAAAA TGATAAAAGG chrVIII:123489-124004 - 67 4.01e-06 CACTAGCTTC GCAAAAAAAAAAGTAGGGATG TGCCGAAAAA chrVII:255219-255687 - 70 4.51e-06 CAAAACATCG CTGAGAAAGGAAAGAAAAATG GCATGATATG chrVII:930757-931214 + 5 4.51e-06 AAAA GAAAAGAAAAAAATGCGCAAG CCCGGAATCG chrXIV:350895-352989 - 72 5.06e-06 ATGAAACT GAAAAATAAAAAAATAAACAG TCTGGTCTTA chrVII:826811-827591 - 27 5.06e-06 TAGAACAAGA TAGGAAAAAAAAGCACAGTAA GAGGATTACC chrIV:132531-133523 + 11 5.66e-06 GGATCACACG TAGTAAAAGAAAAAAAAGATC TCTTCGCGCC chrXV:109821-111298 + 55 5.66e-06 CGCCGTCAGT GAGAAGAAGGAAACCAAGAAG GAAGGCGGTT chrVIII:456051-456398 + 56 6.32e-06 AAAATTCAAG AGGAAAGAGGAAGTGAAGAAG AAAGCCTAGA chrX:139145-139245 + 6 6.32e-06 CTCAT GAGAAAAAATAAAGGCTCAGA TCTGCATGTG chrV:85604-86853 + 2 6.32e-06 A TGAAAAAAGAAAAAAAAACTC CGACGCCCCT chrI:182338-182722 + 26 6.32e-06 GAAATATCAT CAGTAAAAAAAAATAACGACA ACTGCAGGAC chrXIV:725474-726372 - 61 6.32e-06 ATATGCTTAA ATAAAAAAGAAAGTAGAGCAC CCAATGTACG chrIX:257518-258160 + 23 6.32e-06 TATCGCAAGT GGAAAAAAGGCAGTAAAGAAG TTTCAATCCT chrVII:532828-535196 - 26 6.32e-06 ATACAATAGT CTAAAAAAAAAAGGAACATTA ACGGCTGAAA chrXVI:575339-575990 + 75 6.32e-06 TTATCAAAAG TAGGCAAAAGAAAAGAAAATA AATAT chrXIII:747754-748182 - 52 8.70e-06 GTCATCAGAT GAAAAAGACGAAAGAAACATA TGACTAGCTC chrXVI:571935-572977 - 2 8.70e-06 CACATGTTAA AGGGAAAAGAAAGGGGAAATG G chrVII:706898-707319 + 6 8.70e-06 ATCTT CAAAAAAAAAAAACTTTCATG GAAGGACCAC chrII:87943-88589 - 38 8.70e-06 TAGTTAAAGT CAGAGAAAAAAAGCAATATTG TTATCTGCAA chrXII:687665-688294 + 43 9.65e-06 ACCAATTATA CAAAAATAAAAAAGAATGACG GCAAAAAAGC chrXV:979252-979531 + 56 9.65e-06 TGATAAGAAT GTGAAAAAGTAAACGATAAGA TTAATATAAT chrIII:142161-142967 + 50 1.18e-05 TAATTCTTAT GAAAAAAAAAATGTGAAAGAG AGTAGAAAAT chrIV:322180-323640 + 13 1.18e-05 TTGAGAATTT CCAGAAAGAGAAACGAAGAAG AAGACGCCAA chrVII:420965-421418 - 23 1.18e-05 AAAAACAAAT TTGAAATAGAAAACAAAGCAA TTTACAGAAA chrIII:107156-107821 + 19 1.18e-05 TTCCTGAGTA TAAGAAAAATAAGCAAAATAA GTATACATAA chrVIII:17725-18288 + 63 1.31e-05 CCTCGATATT GAAAAAAAGTAAAGGCCACAA GAAAAAAATT chrIV:1165060-1165736 - 1 1.44e-05 AGGAGCAATG AAATGAAAGGAAAAAAAAATA chrXVI:859456-860656 - 3 1.44e-05 TAACTTGTTT CAAAAAAAAAAACGAATAATC AG chrXIV:102484-103046 - 67 1.59e-05 AGCACAAATA CAAAAAAAATAAACGACCCCA GTGAGGGTTG chrXII:975724-976302 + 7 1.59e-05 TTAATG CAAAAAAAATAAACGACCCCA GTGAGGGTTG chrV:550928-551568 - 13 1.59e-05 CACGTTCTGC TTAAAAAAATAAAAAATGATG TCTTCAATAA chrX:435664-435764 - 78 1.75e-05 AA GAGAAAAAGAGAAAGAGGTTA TAGACTATTA chrVII:310569-312388 - 1 1.75e-05 ACATTTTATC GAAACAAAAGAAACGTGGTAA chrXVI:685421-686133 - 15 1.75e-05 CAATTACATC CTGACAAAAAAAATGTTGCAA GATTTCGCAA chrXV:796998-797702 - 74 1.75e-05 AGGAAG CAGAAGAGAAAAACTTAGAAA GGTAGAGGTA chrIV:129930-130958 - 59 1.75e-05 TGAGAGCCAA GTGGAGAAAGAAGAGAACTAG AAGACTTAAG chrXV:382690-383484 + 25 1.75e-05 ACTCTCCTTA GAAACAAAAAAAATTACGTAA TTGGCACAAC chrXV:976182-977718 + 32 1.75e-05 AATACGAAAT AGAAAAGAAAAAGGTATGAAA AGTGCGCATC chrXII:448505-449072 - 19 1.93e-05 TACTCAAATA TGAAAAAAAGAAGAGAACGTC AACAATTTTA chrX:622837-622937 - 28 2.32e-05 CTATGTTGCG GAAAAACAGGCAAGAAAGCAA TCGCGCAAAC chrXVI:376941-377376 - 52 2.54e-05 TATATAATTA ACAAAAAGAAAAATAATCATA TGTATTGTAA chrII:591504-591792 + 72 2.78e-05 TACATATATC TAAAAGGAAAAAGTATAAAAA TTATGCAG chrII:101087-101343 - 59 2.78e-05 CTATTGGTAT ATAAAGAGAGAAGGAGAGATA TAGAAAATTG chrXI:312769-313679 + 79 3.04e-05 ATGGGATTTT GAGGAGACAAAAATGAAGAGG T chrV:51863-52883 + 78 3.32e-05 TCAAGCATGG AAAGCAAAGTAAGAAAAAAGA AT chrXV:980491-981887 + 59 3.32e-05 CAGGTTAATA CAATCAAAAAAAGCTCAAATA TTCTTTTAAT chrXIV:567900-568646 - 20 3.32e-05 AAAAATACTA GAAAAGGAATAAGTGAAACAC CACGTTGATG chrXV:842375-843230 + 29 3.32e-05 TCAAAGGATA AGGAAACAGAAAGGTAAAATA GACCTTGCTC chrVI:226440-226904 + 48 3.32e-05 TTTTTTTTGT TAGAGAAAAAAAGAGATAAGC CCTGTAGGGG chrX:652400-652500 + 18 3.62e-05 TTATCTTTTG ATGTAAAAAAAAATAGGACTA TCAATTTTTA chrXIII:37597-38274 - 36 3.62e-05 TAACGAAACG AAGTAGAAAAAAATTAACAGG TTTGAGTCAG chrXIV:715471-717120 - 1 3.62e-05 CACGCCTTCA AAATAAAAAAAAGATGGACAA chrXII:374204-374735 - 73 3.94e-05 TTGCAAA CAATAAAGATAAGTAAAGTTA ACGATAAAAG chrIV:1095046-1095696 + 34 3.94e-05 TTGCGTCACT GGGAAAAAATAAAAATGCGAA CTCTGTGGAT chrXV:618258-618445 + 48 3.94e-05 AGCTAAAAGA TAGAAAAAAAGAGCACTACAA AAATCTTATC chrXVI:784915-786166 + 80 3.94e-05 CCAAGATGGT GAAGGACAAGAAATAGAAAAA chrVII:73691-74236 + 75 3.94e-05 CATGGCACTA GTATAAAAAAAAGTTTACCAG CCATT chrV:135161-135696 - 15 4.66e-05 TCTTTTTCTC CGAAAATAAGAAAAAAGCATC AGCAGTAATG chrV:287450-287758 + 61 4.66e-05 AAATGAACTC AAGAAGAAGTAAATAATAACA AGCTATAATG chrXV:832297-832824 - 40 5.06e-05 CTCCCTAAGA ATAAAATAGTAAAGGAAGCTA TTGCTACAGA chrXIV:738568-740087 + 49 5.95e-05 TAACGTGGCT GAGAAGAGAAGAATAATAAAG GTATGCCATG chrIV:1165900-1166413 - 19 5.95e-05 TTCTTCTCTA CAGAAAAATGAAAGCAACAGA ATTGAATTTC chrIV:1233059-1235041 - 61 6.44e-05 ATAAACGCAG AAAAAAAATGAAAGTGAGCTG CCGCTGTAGT chrVI:190919-191798 - 54 6.96e-05 GCGTGATAGT GTATAAAAAAAAGTTACAGAA TATAACTTGT chrIII:177063-180104 + 14 6.96e-05 TTTAAATAGG GAGAAAGAAGATACATAACAA GTATGAACAA chrXV:259423-259783 - 41 6.96e-05 ACACTACGGG CTAGAAAAAAAATAAAGGAAA TGTTTCTTAC chrV:166685-167667 + 53 6.96e-05 TTACTGTATC GGGTGAAAAGAAAGACACACA AGAAGGAGAA chrV:551744-552020 - 40 6.96e-05 GTGACAACGC AAGAAACAAAAACAAATGCAA TCTCAATATT chrIV:437533-438555 + 78 6.96e-05 TCATCTGGAC AAGACAAAAAGAAGAAGAAGG GA chrV:311760-312288 + 8 7.52e-05 TTGCGGT CTAACAAAAACAGAGAAAAAC TTGGTACAAA chrV:151146-152967 - 9 7.52e-05 TTAATAAATA TTGAAATAGAAAATGAAATTA AATTTATA chrXII:932193-932460 + 37 8.75e-05 GCACGGATGT AGAGAAACAGAAACGAGGATA ATAAAATCGG chrV:141109-141387 - 19 9.43e-05 CTTTAAACGT AAAAAATAAGAAATGTACGGA GACTGAGAGG chrVII:700111-701573 - 7 1.09e-04 TTTTGGTACA TAGAAAAAAAATGCTATCCTA ACAGCC chrX:227773-227873 + 3 1.55e-04 AC ATGAAGAACGAAAATAACCTA ATCTTTAGGT chrXIII:731452-733606 + 41 1.55e-04 AAATGGATAG CAAAGATGATAAATGAAAATA CAATTAAATT chrII:392812-394104 - 76 2.02e-04 GCTT AGATAAAGAAAAGTAGTGTTA GTATTCCCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VARAAAAAAAAARNAAARAWA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:167641-168255 5.1e-09 16_[+3]_63 chrXIV:88731-89974 2.6e-08 13_[-3]_66 chrVIII:475260-475907 3.2e-08 15_[+3]_64 chrXVI:880040-880556 4e-08 24_[+3]_55 chrXII:793739-797394 7.5e-08 4_[+3]_75 chrVIII:214159-214324 7.5e-08 61_[-3]_18 chrXV:254548-255122 9e-08 35_[+3]_44 chrXV:903213-905078 1.3e-07 42_[+3]_37 chrVIII:386280-387030 2.1e-07 23_[-3]_56 chrII:478966-479524 2.1e-07 72_[+3]_7 chrII:625214-625964 3e-07 54_[-3]_25 chrXI:432643-432999 3.5e-07 73_[+3]_6 chrVII:535454-535861 4.1e-07 50_[-3]_29 chrVIII:85009-85505 4.1e-07 65_[+3]_14 chrVII:771766-772392 4.1e-07 23_[-3]_56 chrV:225435-225679 4.1e-07 42_[+3]_37 chrVIII:379987-382803 4.1e-07 78_[+3]_1 chrVII:1003962-1004403 4.8e-07 1_[+3]_78 chrIX:127420-128215 4.8e-07 53_[-3]_26 chrVII:878052-879328 4.8e-07 43_[+3]_36 chrXIII:145780-146184 5.6e-07 71_[-3]_8 chrI:180938-181586 6.5e-07 40_[-3]_39 chrXV:977929-978378 6.5e-07 45_[+3]_34 chrIX:197300-197981 7.5e-07 77_[-3]_2 chrXIII:353407-353900 7.5e-07 69_[-3]_10 chrXVI:98532-99141 7.5e-07 71_[+3]_8 chrIV:884172-884779 1e-06 66_[-3]_13 chrXI:518829-519501 1e-06 70_[+3]_9 chrVIII:126426-127837 1.1e-06 5_[-3]_74 chrVII:363810-364443 1.3e-06 65_[-3]_14 chrIX:370145-370778 1.5e-06 77_[-3]_2 chrIV:540787-542428 1.9e-06 4_[+3]_75 chrXI:578819-579407 1.9e-06 29_[+3]_50 chrXV:729062-730108 2.2e-06 17_[+3]_62 chrXI:219419-220083 2.2e-06 22_[+3]_57 chrVII:574652-575849 2.5e-06 48_[-3]_31 chrIX:96775-97445 2.8e-06 [-3]_79 chrXV:43184-43873 2.8e-06 70_[+3]_9 chrXII:1002041-1002667 2.8e-06 72_[-3]_7 chrXII:151028-151509 3.2e-06 2_[+3]_77 chrIV:1301865-1302596 3.2e-06 32_[-3]_47 chrXIII:131558-132121 3.2e-06 17_[+3]_62 chrVIII:384099-385838 3.6e-06 24_[+3]_55 chrIV:892421-892690 3.6e-06 75_[+3]_4 chrIV:1012798-1013672 4e-06 43_[+3]_36 chrVIII:123489-124004 4e-06 66_[-3]_13 chrVII:255219-255687 4.5e-06 69_[-3]_10 chrVII:930757-931214 4.5e-06 4_[+3]_75 chrXIV:350895-352989 5.1e-06 71_[-3]_8 chrVII:826811-827591 5.1e-06 26_[-3]_53 chrIV:132531-133523 5.7e-06 10_[+3]_69 chrXV:109821-111298 5.7e-06 54_[+3]_25 chrVIII:456051-456398 6.3e-06 55_[+3]_24 chrX:139145-139245 6.3e-06 5_[+3]_74 chrV:85604-86853 6.3e-06 1_[+3]_78 chrI:182338-182722 6.3e-06 25_[+3]_54 chrXIV:725474-726372 6.3e-06 60_[-3]_19 chrIX:257518-258160 6.3e-06 22_[+3]_57 chrVII:532828-535196 6.3e-06 25_[-3]_54 chrXVI:575339-575990 6.3e-06 74_[+3]_5 chrXIII:747754-748182 8.7e-06 51_[-3]_28 chrXVI:571935-572977 8.7e-06 1_[-3]_78 chrVII:706898-707319 8.7e-06 5_[+3]_74 chrII:87943-88589 8.7e-06 37_[-3]_42 chrXII:687665-688294 9.6e-06 42_[+3]_37 chrXV:979252-979531 9.6e-06 55_[+3]_24 chrIII:142161-142967 1.2e-05 49_[+3]_30 chrIV:322180-323640 1.2e-05 12_[+3]_67 chrVII:420965-421418 1.2e-05 22_[-3]_57 chrIII:107156-107821 1.2e-05 18_[+3]_61 chrVIII:17725-18288 1.3e-05 62_[+3]_17 chrIV:1165060-1165736 1.4e-05 [-3]_79 chrXVI:859456-860656 1.4e-05 2_[-3]_77 chrXIV:102484-103046 1.6e-05 66_[-3]_13 chrXII:975724-976302 1.6e-05 6_[+3]_73 chrV:550928-551568 1.6e-05 12_[-3]_67 chrX:435664-435764 1.8e-05 77_[-3]_2 chrVII:310569-312388 1.8e-05 [-3]_79 chrXVI:685421-686133 1.8e-05 14_[-3]_65 chrXV:796998-797702 1.8e-05 73_[-3]_6 chrIV:129930-130958 1.8e-05 58_[-3]_21 chrXV:382690-383484 1.8e-05 24_[+3]_55 chrXV:976182-977718 1.8e-05 31_[+3]_48 chrXII:448505-449072 1.9e-05 18_[-3]_61 chrX:622837-622937 2.3e-05 27_[-3]_52 chrXVI:376941-377376 2.5e-05 51_[-3]_28 chrII:591504-591792 2.8e-05 71_[+3]_8 chrII:101087-101343 2.8e-05 58_[-3]_21 chrXI:312769-313679 3e-05 78_[+3]_1 chrV:51863-52883 3.3e-05 77_[+3]_2 chrXV:980491-981887 3.3e-05 58_[+3]_21 chrXIV:567900-568646 3.3e-05 19_[-3]_60 chrXV:842375-843230 3.3e-05 28_[+3]_51 chrVI:226440-226904 3.3e-05 47_[+3]_32 chrX:652400-652500 3.6e-05 17_[+3]_62 chrXIII:37597-38274 3.6e-05 35_[-3]_44 chrXIV:715471-717120 3.6e-05 [-3]_79 chrXII:374204-374735 3.9e-05 72_[-3]_7 chrIV:1095046-1095696 3.9e-05 33_[+3]_46 chrXV:618258-618445 3.9e-05 47_[+3]_32 chrXVI:784915-786166 3.9e-05 79_[+3] chrVII:73691-74236 3.9e-05 74_[+3]_5 chrV:135161-135696 4.7e-05 14_[-3]_65 chrV:287450-287758 4.7e-05 60_[+3]_19 chrXV:832297-832824 5.1e-05 39_[-3]_40 chrXIV:738568-740087 5.9e-05 48_[+3]_31 chrIV:1165900-1166413 5.9e-05 18_[-3]_61 chrIV:1233059-1235041 6.4e-05 60_[-3]_19 chrVI:190919-191798 7e-05 53_[-3]_26 chrIII:177063-180104 7e-05 13_[+3]_66 chrXV:259423-259783 7e-05 40_[-3]_39 chrV:166685-167667 7e-05 52_[+3]_27 chrV:551744-552020 7e-05 39_[-3]_40 chrIV:437533-438555 7e-05 77_[+3]_2 chrV:311760-312288 7.5e-05 7_[+3]_72 chrV:151146-152967 7.5e-05 8_[-3]_71 chrXII:932193-932460 8.8e-05 36_[+3]_43 chrV:141109-141387 9.4e-05 18_[-3]_61 chrVII:700111-701573 0.00011 6_[-3]_73 chrX:227773-227873 0.00015 2_[+3]_77 chrXIII:731452-733606 0.00015 40_[+3]_39 chrII:392812-394104 0.0002 75_[-3]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VARAAAAAAAAARNAAARAWA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VARAAAAAAAAARNAAARAWA width=21 seqs=122 chrXII:167641-168255 ( 17) GAGAAAAAAAAAAGAAAAAGA 1 chrXIV:88731-89974 ( 14) GAAAAAAAAAAAAGAAAATAA 1 chrVIII:475260-475907 ( 16) CAAAAAAAAAAAAAAATGATA 1 chrXVI:880040-880556 ( 25) GAGAAAAAGAAAGAGAAAAGA 1 chrXII:793739-797394 ( 5) CAAAAAAAAGAAGAAGACAAA 1 chrVIII:214159-214324 ( 62) TAAAAAAAAAAAAAAAAGCTA 1 chrXV:254548-255122 ( 36) ATAAAAAAAAAAGGGAAGAAA 1 chrXV:903213-905078 ( 43) GCAAAAAAAAAAAGAAAACAA 1 chrVIII:386280-387030 ( 24) GAAAAAAACAAAATAAAGAAA 1 chrII:478966-479524 ( 73) GAAACAAAAAAAAAAAAAATG 1 chrII:625214-625964 ( 55) GTGAAAAAAGAAGCAAACCGA 1 chrXI:432643-432999 ( 74) GGAAAAAAAAAAATACAAATA 1 chrVII:535454-535861 ( 51) CAGTAAAAGAAAATAAAAATA 1 chrVIII:85009-85505 ( 66) GAAAAAAAAAAAATTCAAAAA 1 chrVII:771766-772392 ( 24) CGAAAGAAAAAAAGAAAAATA 1 chrV:225435-225679 ( 43) CAGAAAAAGAAAGAAAAAAGC 1 chrVIII:379987-382803 ( 79) GAAAAAAAAAAAGTGTAGGAA 1 chrVII:1003962-1004403 ( 2) GAAAAAAAGAAAGGAGAAACA 1 chrIX:127420-128215 ( 54) CAGGAGAAAGAAACGAAGATA 1 chrVII:878052-879328 ( 44) GAAAAAAAAAAAATTAAATAA 1 chrXIII:145780-146184 ( 72) CAAGAAAAGGAAGAAAAGAAC 1 chrI:180938-181586 ( 41) GAGGAAAAAGAAAAAATAATG 1 chrXV:977929-978378 ( 46) CAAAAAAAAAAAATAATAGTA 1 chrIX:197300-197981 ( 78) CTAAAAAAAAAAGAATAAAAA 1 chrXIII:353407-353900 ( 70) CAAAAAAAAAAAAAATTCAAA 1 chrXVI:98532-99141 ( 72) GAAAAAAAAGAAAAATTCAAA 1 chrIV:884172-884779 ( 67) GTGAAAAAAAAAGAGAAAGTG 1 chrXI:518829-519501 ( 71) AAAAAGAAAAAAGCAGACAAA 1 chrVIII:126426-127837 ( 6) TAAAAAAAGGAAGGAAAAGAA 1 chrVII:363810-364443 ( 66) ACGAAAAAAAAAAAAATGAAA 1 chrIX:370145-370778 ( 78) GAAAAAAATAAAATAAACATA 1 chrIV:540787-542428 ( 5) AAGAAAAAAGAAAATCAGCAA 1 chrXI:578819-579407 ( 30) TAAAGAAAAAAAATGAAAATA 1 chrXV:729062-730108 ( 18) AAGACAAAGAAAGAGAAACAG 1 chrXI:219419-220083 ( 23) GAAACAAAAAAAGCATGGAAA 1 chrVII:574652-575849 ( 49) GAGGAAAAGAAAAAAAAATAC 1 chrIX:96775-97445 ( 1) CTGAAAAGAAAAAAAAAGGAA 1 chrXV:43184-43873 ( 71) GAAAAAAAGGAAAAAGTCCGA 1 chrXII:1002041-1002667 ( 73) GAAAGAAAAGAAATAGAGTAA 1 chrXII:151028-151509 ( 3) AAAGAAAAGGAAAGGAAGTAG 1 chrIV:1301865-1302596 ( 33) CAGTAAAAAAAAAGAATATAA 1 chrXIII:131558-132121 ( 18) AAAAAAGAAGAAACAAAGCAC 1 chrVIII:384099-385838 ( 25) TGAAAAAAAAAAAGAGAACTG 1 chrIV:892421-892690 ( 76) CTAGAAGAAAAAACAAAGAAG 1 chrIV:1012798-1013672 ( 44) GCGAAGAAAAAAGTACAAAAA 1 chrVIII:123489-124004 ( 67) GCAAAAAAAAAAGTAGGGATG 1 chrVII:255219-255687 ( 70) CTGAGAAAGGAAAGAAAAATG 1 chrVII:930757-931214 ( 5) GAAAAGAAAAAAATGCGCAAG 1 chrXIV:350895-352989 ( 72) GAAAAATAAAAAAATAAACAG 1 chrVII:826811-827591 ( 27) TAGGAAAAAAAAGCACAGTAA 1 chrIV:132531-133523 ( 11) TAGTAAAAGAAAAAAAAGATC 1 chrXV:109821-111298 ( 55) GAGAAGAAGGAAACCAAGAAG 1 chrVIII:456051-456398 ( 56) AGGAAAGAGGAAGTGAAGAAG 1 chrX:139145-139245 ( 6) GAGAAAAAATAAAGGCTCAGA 1 chrV:85604-86853 ( 2) TGAAAAAAGAAAAAAAAACTC 1 chrI:182338-182722 ( 26) CAGTAAAAAAAAATAACGACA 1 chrXIV:725474-726372 ( 61) ATAAAAAAGAAAGTAGAGCAC 1 chrIX:257518-258160 ( 23) GGAAAAAAGGCAGTAAAGAAG 1 chrVII:532828-535196 ( 26) CTAAAAAAAAAAGGAACATTA 1 chrXVI:575339-575990 ( 75) TAGGCAAAAGAAAAGAAAATA 1 chrXIII:747754-748182 ( 52) GAAAAAGACGAAAGAAACATA 1 chrXVI:571935-572977 ( 2) AGGGAAAAGAAAGGGGAAATG 1 chrVII:706898-707319 ( 6) CAAAAAAAAAAAACTTTCATG 1 chrII:87943-88589 ( 38) CAGAGAAAAAAAGCAATATTG 1 chrXII:687665-688294 ( 43) CAAAAATAAAAAAGAATGACG 1 chrXV:979252-979531 ( 56) GTGAAAAAGTAAACGATAAGA 1 chrIII:142161-142967 ( 50) GAAAAAAAAAATGTGAAAGAG 1 chrIV:322180-323640 ( 13) CCAGAAAGAGAAACGAAGAAG 1 chrVII:420965-421418 ( 23) TTGAAATAGAAAACAAAGCAA 1 chrIII:107156-107821 ( 19) TAAGAAAAATAAGCAAAATAA 1 chrVIII:17725-18288 ( 63) GAAAAAAAGTAAAGGCCACAA 1 chrIV:1165060-1165736 ( 1) AAATGAAAGGAAAAAAAAATA 1 chrXVI:859456-860656 ( 3) CAAAAAAAAAAACGAATAATC 1 chrXIV:102484-103046 ( 67) CAAAAAAAATAAACGACCCCA 1 chrXII:975724-976302 ( 7) CAAAAAAAATAAACGACCCCA 1 chrV:550928-551568 ( 13) TTAAAAAAATAAAAAATGATG 1 chrX:435664-435764 ( 78) GAGAAAAAGAGAAAGAGGTTA 1 chrVII:310569-312388 ( 1) GAAACAAAAGAAACGTGGTAA 1 chrXVI:685421-686133 ( 15) CTGACAAAAAAAATGTTGCAA 1 chrXV:796998-797702 ( 74) CAGAAGAGAAAAACTTAGAAA 1 chrIV:129930-130958 ( 59) GTGGAGAAAGAAGAGAACTAG 1 chrXV:382690-383484 ( 25) GAAACAAAAAAAATTACGTAA 1 chrXV:976182-977718 ( 32) AGAAAAGAAAAAGGTATGAAA 1 chrXII:448505-449072 ( 19) TGAAAAAAAGAAGAGAACGTC 1 chrX:622837-622937 ( 28) GAAAAACAGGCAAGAAAGCAA 1 chrXVI:376941-377376 ( 52) ACAAAAAGAAAAATAATCATA 1 chrII:591504-591792 ( 72) TAAAAGGAAAAAGTATAAAAA 1 chrII:101087-101343 ( 59) ATAAAGAGAGAAGGAGAGATA 1 chrXI:312769-313679 ( 79) GAGGAGACAAAAATGAAGAGG 1 chrV:51863-52883 ( 78) AAAGCAAAGTAAGAAAAAAGA 1 chrXV:980491-981887 ( 59) CAATCAAAAAAAGCTCAAATA 1 chrXIV:567900-568646 ( 20) GAAAAGGAATAAGTGAAACAC 1 chrXV:842375-843230 ( 29) AGGAAACAGAAAGGTAAAATA 1 chrVI:226440-226904 ( 48) TAGAGAAAAAAAGAGATAAGC 1 chrX:652400-652500 ( 18) ATGTAAAAAAAAATAGGACTA 1 chrXIII:37597-38274 ( 36) AAGTAGAAAAAAATTAACAGG 1 chrXIV:715471-717120 ( 1) AAATAAAAAAAAGATGGACAA 1 chrXII:374204-374735 ( 73) CAATAAAGATAAGTAAAGTTA 1 chrIV:1095046-1095696 ( 34) GGGAAAAAATAAAAATGCGAA 1 chrXV:618258-618445 ( 48) TAGAAAAAAAGAGCACTACAA 1 chrXVI:784915-786166 ( 80) GAAGGACAAGAAATAGAAAAA 1 chrVII:73691-74236 ( 75) GTATAAAAAAAAGTTTACCAG 1 chrV:135161-135696 ( 15) CGAAAATAAGAAAAAAGCATC 1 chrV:287450-287758 ( 61) AAGAAGAAGTAAATAATAACA 1 chrXV:832297-832824 ( 40) ATAAAATAGTAAAGGAAGCTA 1 chrXIV:738568-740087 ( 49) GAGAAGAGAAGAATAATAAAG 1 chrIV:1165900-1166413 ( 19) CAGAAAAATGAAAGCAACAGA 1 chrIV:1233059-1235041 ( 61) AAAAAAAATGAAAGTGAGCTG 1 chrVI:190919-191798 ( 54) GTATAAAAAAAAGTTACAGAA 1 chrIII:177063-180104 ( 14) GAGAAAGAAGATACATAACAA 1 chrXV:259423-259783 ( 41) CTAGAAAAAAAATAAAGGAAA 1 chrV:166685-167667 ( 53) GGGTGAAAAGAAAGACACACA 1 chrV:551744-552020 ( 40) AAGAAACAAAAACAAATGCAA 1 chrIV:437533-438555 ( 78) AAGACAAAAAGAAGAAGAAGG 1 chrV:311760-312288 ( 8) CTAACAAAAACAGAGAAAAAC 1 chrV:151146-152967 ( 9) TTGAAATAGAAAATGAAATTA 1 chrXII:932193-932460 ( 37) AGAGAAACAGAAACGAGGATA 1 chrV:141109-141387 ( 19) AAAAAATAAGAAATGTACGGA 1 chrVII:700111-701573 ( 7) TAGAAAAAAAATGCTATCCTA 1 chrX:227773-227873 ( 3) ATGAAGAACGAAAATAACCTA 1 chrXIII:731452-733606 ( 41) CAAAGATGATAAATGAAAATA 1 chrII:392812-394104 ( 76) AGATAAAGAAAAGTAGTGTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VARAAAAAAAAARNAAARAWA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 9.30816 E= 2.0e-063 -48 54 103 -120 100 -188 -56 -76 93 -1357 112 -1357 122 -1357 -38 -148 139 -100 -129 -1357 144 -1357 -46 -1357 139 -246 -146 -228 151 -346 -129 -1357 116 -288 39 -370 93 -1357 62 -148 156 -288 -246 -1357 161 -1357 -1357 -370 96 -346 96 -528 -11 6 29 -11 85 -346 58 -120 107 -100 -56 -148 100 -166 -88 -64 47 18 96 -1357 78 34 -114 -120 57 -166 -66 14 106 -76 34 -1357 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VARAAAAAAAAARNAAARAWA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 122 E= 2.0e-063 0.229508 0.262295 0.368852 0.139344 0.639344 0.049180 0.122951 0.188525 0.606557 0.000000 0.393443 0.000000 0.745902 0.000000 0.139344 0.114754 0.836066 0.090164 0.073770 0.000000 0.868852 0.000000 0.131148 0.000000 0.836066 0.032787 0.065574 0.065574 0.909836 0.016393 0.073770 0.000000 0.713115 0.024590 0.237705 0.024590 0.606557 0.000000 0.278689 0.114754 0.942623 0.024590 0.032787 0.000000 0.975410 0.000000 0.000000 0.024590 0.622951 0.016393 0.352459 0.008197 0.295082 0.188525 0.221311 0.295082 0.573770 0.016393 0.270492 0.139344 0.672131 0.090164 0.122951 0.114754 0.639344 0.057377 0.098361 0.204918 0.442623 0.204918 0.352459 0.000000 0.549180 0.229508 0.081967 0.139344 0.475410 0.057377 0.114754 0.352459 0.663934 0.106557 0.229508 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VARAAAAAAAAARNAAARAWA MEME-3 regular expression -------------------------------------------------------------------------------- [GCA]A[AG]AAAAA[AG][AG]AA[AG][ATG][AG]A[AT][AGC][AC][AT][AG] -------------------------------------------------------------------------------- Time 994.00 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:376139-376865 4.14e-01 100 chrVIII:123489-124004 1.91e-02 66_[-3(4.01e-06)]_13 chrXIV:783790-784119 1.26e-01 100 chrVII:73691-74236 7.21e-05 25_[-2(1.53e-06)]_19_[+3(3.94e-05)]_\ 5 chrXI:219419-220083 7.49e-03 22_[+3(2.18e-06)]_57 chrI:166046-166683 6.03e-01 100 chrIV:1441179-1442924 8.56e-01 100 chrXVI:810438-810843 1.11e-01 100 chrXIII:586462-587129 8.92e-01 100 chrVII:422914-423530 9.41e-03 4_[-1(7.50e-05)]_75 chrVII:320536-320730 3.83e-01 100 chrXI:333513-335009 3.66e-01 100 chrIV:765334-765770 6.74e-01 100 chrIII:197306-197951 8.26e-02 100 chrXVI:352185-353115 5.12e-01 100 chrIV:1165900-1166413 8.68e-02 18_[-3(5.95e-05)]_61 chrXI:518829-519501 3.15e-04 70_[+3(9.96e-07)]_9 chrIX:370145-370778 1.14e-10 48_[-1(9.09e-11)]_8_[-3(1.49e-06)]_\ 2 chrXIV:506944-507673 6.54e-01 100 chrIV:1016897-1017678 2.62e-01 100 chrXII:426895-427458 4.47e-07 5_[-2(1.79e-05)]_13_[-1(5.76e-09)]_\ 31 chrIX:354931-355523 8.46e-01 100 chrII:347403-347981 3.20e-04 15_[-1(1.35e-07)]_64 chrXI:457395-459051 7.09e-01 100 chrXVI:55655-56539 4.86e-01 100 chrVII:328177-329252 2.99e-01 100 chrXV:663389-664406 5.47e-08 8_[+2(3.24e-11)]_62 chrXII:86822-87245 5.59e-01 100 chrVII:784706-785672 9.59e-02 100 chrXV:741923-742185 3.55e-01 100 chrXIII:168605-169337 8.43e-01 100 chrV:151146-152967 1.63e-01 8_[-3(7.52e-05)]_71 chrXVI:575339-575990 1.98e-04 74_[+3(6.32e-06)]_5 chrII:642883-643252 2.64e-04 31_[+2(5.94e-08)]_39 chrIV:913933-916235 3.28e-01 100 chrXV:594113-594654 2.90e-11 28_[+1(3.73e-11)]_13_[+2(1.96e-07)]_\ 8 chrIV:1012798-1013672 1.70e-02 43_[+3(4.01e-06)]_36 chrXIII:761521-763204 2.86e-01 100 chrVI:210447-210901 1.21e-05 2_[+1(7.59e-08)]_30_[+2(5.98e-05)]_\ 17 chrXII:781606-781882 3.46e-01 100 chrVIII:132670-133426 2.46e-04 35_[+1(1.77e-07)]_44 chrX:453349-453449 7.43e-01 100 chrVII:286094-287900 4.11e-01 100 chrVIII:361969-362298 9.88e-01 100 chrXII:932193-932460 4.69e-02 36_[+3(8.75e-05)]_43 chrXIII:295828-299450 8.75e-01 100 chrXIV:198249-198445 4.35e-01 100 chrXIV:631503-632168 1.64e-09 68_[+1(2.16e-13)]_11 chrVII:363810-364443 3.34e-03 65_[-3(1.31e-06)]_14 chrXVI:768549-769447 3.45e-01 100 chrXIII:131558-132121 7.51e-08 17_[+3(3.16e-06)]_5_[+1(5.76e-09)]_\ 36 chrIX:174830-175351 1.34e-04 34_[-1(2.89e-08)]_45 chrXV:464057-464755 7.70e-01 100 chrXIII:289385-291158 5.52e-01 100 chrVII:828518-828985 1.43e-10 29_[+1(5.76e-09)]_13_[+2(1.06e-08)]_\ 7 chrXI:575130-576432 1.09e-01 100 chrX:374163-374263 4.87e-10 15_[+1(5.76e-09)]_13_[+2(1.06e-08)]_\ 21 chrVI:180638-181363 2.21e-15 31_[+1(6.03e-12)]_12_[+2(1.27e-10)]_\ 6 chrXVI:214633-216036 9.65e-02 100 chrVI:130939-131935 1.57e-01 100 chrXI:325838-327603 3.49e-01 100 chrXII:898090-899625 9.27e-01 100 chrXII:84118-84709 1.22e-01 100 chrXI:24745-26532 4.40e-01 100 chrV:268943-270215 8.26e-01 100 chrII:101087-101343 2.59e-02 58_[-3(2.78e-05)]_21 chrVII:185312-186085 8.83e-07 73_[+1(4.10e-10)]_6 chrXIII:372143-372739 7.10e-06 61_[+1(1.90e-09)]_18 chrXIV:88731-89974 7.72e-05 13_[-3(2.55e-08)]_66 chrXIII:145780-146184 2.68e-04 71_[-3(5.57e-07)]_8 chrXII:568033-569124 2.23e-02 36_[+1(8.44e-05)]_43 chrVII:930757-931214 1.38e-17 4_[+3(4.51e-06)]_[+1(6.03e-12)]_12_\ [+2(1.27e-10)]_12 chrXI:109350-110626 1.74e-01 100 chrIII:168082-168633 4.40e-11 1_[+1(7.96e-10)]_13_[+2(2.50e-08)]_\ 35 chrXIII:23602-25930 9.09e-01 100 chrII:87943-88589 1.29e-02 37_[-3(8.70e-06)]_42 chrV:302781-303561 8.86e-01 100 chrXII:459667-460702 4.25e-01 100 chrIV:1243101-1243325 6.62e-01 100 chrXII:198368-199766 1.87e-01 100 chrVII:204663-206276 6.67e-01 100 chrXVI:425755-426004 7.46e-01 100 chrVI:106227-106454 6.54e-01 100 chrXIV:627969-629072 6.29e-01 100 chrII:372810-375885 1.51e-01 100 chrXII:448505-449072 6.92e-03 18_[-3(1.93e-05)]_61 chrII:88961-89522 2.78e-01 100 chrXII:1002041-1002667 3.59e-03 72_[-3(2.80e-06)]_7 chrXV:867040-868502 9.28e-01 100 chrVIII:34401-36156 1.15e-01 100 chrVI:226440-226904 3.30e-08 47_[+3(3.32e-05)]_5_[+1(4.10e-10)]_\ 6 chrXI:38583-39171 3.91e-01 100 chrXV:976182-977718 6.70e-02 31_[+3(1.75e-05)]_48 chrIV:437533-438555 1.51e-01 77_[+3(6.96e-05)]_2 chrXV:113591-114200 5.06e-05 [-1(2.89e-08)]_79 chrVII:706898-707319 5.51e-07 5_[+3(8.70e-06)]_31_[+1(6.03e-08)]_\ 22 chrXVI:209561-210911 2.24e-07 13_[+1(9.09e-11)]_66 chrXII:592379-593164 5.90e-01 100 chrXVI:784915-786166 7.09e-02 79_[+3(3.94e-05)] chrVIII:379987-382803 1.47e-03 78_[+3(4.08e-07)]_1 chrV:550928-551568 3.41e-02 12_[-3(1.59e-05)]_67 chrII:350519-351139 2.59e-05 47_[-2(6.40e-08)]_23 chrXVI:621761-622831 9.38e-01 100 chrIII:116535-117474 9.45e-01 100 chrXII:370496-370871 1.29e-01 100 chrIII:107156-107821 2.32e-02 18_[+3(1.18e-05)]_61 chrIV:472800-473838 9.51e-01 100 chrXVI:880040-880556 2.02e-11 24_[+3(4.01e-08)]_10_[+1(1.96e-10)]_\ 24 chrIV:217037-218081 2.10e-01 100 chrXV:80367-83528 1.90e-01 100 chrXIII:183753-184162 4.29e-07 31_[+2(1.27e-10)]_39 chrIX:248721-249334 7.87e-01 100 chrV:551744-552020 1.10e-01 39_[-3(6.96e-05)]_40 chrVI:204854-205630 6.76e-01 100 chrV:122177-123040 7.99e-02 100 chrIV:884172-884779 2.42e-08 39_[-1(9.57e-09)]_6_[-3(9.96e-07)]_\ 13 chrXV:444650-446278 9.06e-01 100 chrXIII:5406-5689 7.71e-01 100 chrIX:231233-232425 4.83e-01 100 chrXV:380628-381053 1.10e-01 100 chrVII:730953-731423 9.38e-05 43_[-1(1.35e-07)]_36 chrXIII:625850-626897 4.68e-01 100 chrVIII:145958-146428 9.19e-01 100 chrXVI:859456-860656 2.98e-02 2_[-3(1.44e-05)]_77 chrV:396754-397955 3.67e-01 100 chrVII:532828-535196 1.98e-02 25_[-3(6.32e-06)]_54 chrXV:912069-912604 3.48e-01 100 chrXIII:773003-773253 5.98e-01 100 chrXV:778168-779477 9.30e-01 100 chrX:523917-524017 5.16e-01 100 chrVII:648093-648480 1.78e-01 100 chrX:414759-414859 5.68e-01 100 chrXII:648981-651242 1.60e-01 100 chrXII:282162-283875 2.12e-01 100 chrII:60199-61256 7.11e-01 100 chrXIII:634007-634853 1.97e-01 100 chrXIV:461882-462349 4.30e-01 100 chrI:151309-152020 3.69e-01 100 chrVII:544355-546146 1.44e-01 100 chrII:165139-165406 3.44e-01 100 chrXI:379476-379962 7.39e-13 10_[-2(3.24e-11)]_15_[-1(1.90e-09)]_\ 24 chrV:287450-287758 1.02e-01 60_[+3(4.66e-05)]_19 chrXI:578819-579407 2.40e-04 29_[+3(1.92e-06)]_16_[+3(2.32e-05)]_\ 13 chrXV:618633-624727 9.89e-01 100 chrX:415770-415870 1.07e-02 13_[+2(6.38e-05)]_57 chrXIII:631124-633616 6.15e-01 100 chrVII:483317-483770 1.91e-01 100 chrX:538377-538477 2.85e-04 43_[-2(1.50e-07)]_27 chrXI:106479-106908 1.10e-01 100 chrVIII:16817-17396 9.71e-01 100 chrXIV:61521-62987 8.24e-01 100 chrIV:229841-230659 2.18e-01 100 chrXIII:517581-518400 3.82e-02 100 chrIV:892421-892690 7.30e-03 28_[+3(3.16e-06)]_26_[+3(3.57e-06)]_\ 4 chrVIII:214159-214324 3.95e-04 61_[-3(7.46e-08)]_18 chrV:287968-288765 6.74e-01 100 chrVII:576898-577622 8.82e-01 100 chrX:58788-58888 3.57e-06 6_[+2(3.06e-10)]_64 chrIV:448841-450088 9.38e-01 100 chrXII:566244-566649 8.38e-01 100 chrVIII:62506-63080 2.91e-04 54_[-1(4.18e-07)]_25 chrXIII:348122-348804 4.95e-01 100 chrIII:227708-228174 1.18e-06 50_[-2(5.53e-10)]_20 chrVII:319623-320320 2.44e-02 100 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23_[-3(4.08e-07)]_21_[-3(8.75e-05)]_\ 14 chrX:390834-390934 1.43e-09 29_[+1(8.18e-08)]_14_[+2(5.04e-09)]_\ 6 chrXV:903213-905078 3.21e-04 42_[+3(1.29e-07)]_37 chrXI:282760-284879 5.91e-02 100 chrXII:711680-713477 1.73e-01 100 chrXII:241457-241893 7.89e-01 100 chrXV:854007-854405 1.09e-06 38_[+1(9.09e-11)]_41 chrXIV:350895-352989 1.58e-02 71_[-3(5.06e-06)]_8 chrII:706938-707611 7.50e-01 100 chrXII:673124-675513 9.96e-01 100 chrXIII:320948-321671 9.44e-01 100 chrXIV:619396-620084 8.71e-01 100 chrXVI:338641-339301 1.30e-02 100 chrII:332244-332608 9.69e-01 100 chrV:306283-306869 6.80e-02 100 chrXII:11103-11414 7.43e-01 100 chrIV:410192-410745 6.28e-06 4_[-1(2.39e-09)]_75 chrXII:449275-449447 6.59e-01 100 chrXIV:102484-103046 1.61e-12 [-2(3.45e-10)]_15_[-1(1.35e-07)]_\ [-3(1.59e-05)]_13 chrXII:963711-963884 8.85e-01 100 chrIII:293658-294399 6.06e-01 100 chrIX:299969-301073 9.13e-01 100 chrXVI:700449-700702 5.66e-01 100 chrXV:359631-360757 1.50e-01 100 chrVIII:103876-106155 1.40e-01 100 chrVIII:85009-85505 2.57e-03 65_[+3(4.08e-07)]_14 chrVII:541620-542165 1.27e-08 50_[-1(9.09e-11)]_29 chrI:180938-181586 1.22e-04 13_[-1(7.50e-05)]_6_[-3(6.47e-07)]_\ 39 chrXII:516263-516781 3.38e-01 100 chrIII:142161-142967 1.13e-02 49_[+3(1.18e-05)]_30 chrXI:202856-203328 2.53e-06 [-1(4.10e-10)]_79 chrXVI:571935-572977 8.10e-04 1_[-3(8.70e-06)]_78 chrXV:505756-506980 7.50e-02 100 chrVIII:562336-562569 3.00e-01 100 chrVII:960335-961485 2.36e-01 100 chrXVI:435322-436188 4.71e-01 100 chrIV:1182741-1183294 8.91e-01 100 chrXV:407624-408197 9.98e-01 100 chrVII:913096-913641 1.70e-01 100 chrIX:197300-197981 4.54e-11 44_[-1(9.09e-11)]_12_[-3(7.50e-07)]_\ 2 chrXVI:376941-377376 4.40e-02 51_[-3(2.54e-05)]_28 chrXVI:559911-560482 8.32e-05 59_[+1(7.59e-08)]_20 chrVIII:456051-456398 9.17e-03 55_[+3(6.32e-06)]_24 chrVI:190919-191798 1.33e-01 53_[-3(6.96e-05)]_26 chrXIV:96062-96620 1.98e-02 24_[-2(1.30e-05)]_46 chrIII:127547-127860 2.38e-06 62_[-2(3.45e-10)]_8 chrXIII:880222-880921 8.86e-01 100 chrVIII:236554-236891 6.30e-01 100 chrX:652400-652500 9.96e-02 17_[+3(3.62e-05)]_62 chrXII:728667-730877 4.06e-01 100 chrIII:123407-123761 2.45e-09 50_[+1(2.16e-13)]_29 chrIX:127420-128215 8.40e-04 53_[-3(4.77e-07)]_26 chrVII:110426-110919 3.10e-04 10_[+1(4.18e-07)]_69 chrXII:374204-374735 6.83e-02 72_[-3(3.94e-05)]_7 chrXIV:569639-570052 1.32e-07 79_[+1(1.96e-10)] chrXII:734719-735255 9.49e-01 100 chrVII:823267-823699 3.84e-07 48_[-2(3.24e-11)]_22 chrII:405558-406394 3.62e-08 33_[-2(1.79e-05)]_13_[-1(5.76e-09)]_\ 3 chrX:233654-233754 2.47e-01 100 chrII:606217-607490 5.48e-01 100 chrXV:1003912-1005171 1.46e-01 100 chrIV:1256914-1257306 8.37e-01 100 chrIV:802562-802992 6.25e-11 11_[+1(7.96e-10)]_13_[+2(2.50e-08)]_\ 25 chrX:651158-651258 4.27e-01 100 chrVII:531520-531810 3.51e-05 37_[-1(5.76e-09)]_42 chrIV:601743-602292 6.35e-01 100 chrVIII:133584-134619 2.97e-01 100 chrIV:1201221-1202762 1.24e-01 100 chrXV:228036-228615 3.98e-06 55_[-2(3.45e-10)]_15 chrIII:28549-31245 7.92e-01 100 chrVII:799691-800257 3.73e-01 100 chrIV:1165060-1165736 4.66e-02 [-3(1.44e-05)]_79 chrV:441861-442665 8.11e-01 100 chrX:521591-521691 4.43e-02 100 chrXIII:462857-463896 9.79e-01 100 chrXIII:650681-652974 5.12e-01 100 chrXIV:499985-501728 5.75e-01 100 chrXV:109821-111298 1.17e-02 54_[+3(5.66e-06)]_25 chrVII:1003962-1004403 1.41e-03 1_[+3(4.77e-07)]_78 chrXIII:747754-748182 8.60e-08 15_[+2(1.06e-08)]_6_[-3(8.70e-06)]_\ 28 chrXI:430784-431374 1.16e-01 13_[+2(5.25e-05)]_57 chrIX:96775-97445 8.63e-03 [-3(2.80e-06)]_1_[-3(6.44e-05)]_57 chrIV:1524171-1525113 9.86e-01 100 chrXII:208675-208963 7.46e-01 100 chrVII:857245-857613 7.16e-02 6_[+1(7.50e-05)]_73 chrX:353704-353804 4.36e-01 100 chrIV:359254-359865 2.35e-04 67_[-2(2.94e-08)]_3 chrV:311760-312288 3.94e-08 7_[+3(7.52e-05)]_28_[+1(9.09e-11)]_\ 23 chrXIII:731452-733606 2.07e-01 100 chrVII:773701-774524 9.35e-01 100 chrIV:118448-118855 7.40e-01 100 chrVII:738508-739565 5.89e-01 100 chrIV:1031582-1032446 2.58e-01 100 chrII:226878-227370 4.44e-10 [-2(3.89e-10)]_23_[-1(1.77e-07)]_26 chrIX:184204-184469 4.17e-01 100 chrIV:1233059-1235041 2.78e-02 60_[-3(6.44e-05)]_19 chrII:9386-9892 9.52e-06 48_[-1(1.35e-07)]_31 chrI:141528-143805 6.04e-01 100 chrIII:161940-163825 3.20e-01 100 chrVII:255219-255687 1.14e-02 69_[-3(4.51e-06)]_10 chrII:197184-197847 3.10e-16 28_[-2(9.57e-14)]_15_[-1(1.96e-10)]_\ 6 chrXIV:585420-586525 5.58e-01 100 chrIV:1174517-1174839 4.09e-01 100 chrIV:433936-434547 8.71e-01 100 chrXV:710006-710489 2.28e-06 3_[-2(1.96e-07)]_16_[+1(2.99e-05)]_\ 30 chrX:227773-227873 1.45e-01 100 chrXVI:172941-174084 7.11e-01 100 chrXIV:215804-217531 7.02e-01 100 chrXV:438143-439020 3.61e-01 100 chrIV:992600-993218 1.59e-07 14_[-1(6.03e-12)]_65 chrX:435664-435764 6.12e-02 77_[-3(1.75e-05)]_2 chrXII:962862-963535 8.22e-01 100 chrII:592348-592786 2.31e-01 100 chrV:141109-141387 5.52e-02 18_[-3(9.43e-05)]_61 chrIX:142061-143027 4.13e-01 100 chrVIII:455582-455829 1.33e-01 100 chrV:56319-56538 9.85e-01 100 chrIV:1236382-1238916 6.82e-01 100 chrXI:432643-432999 2.27e-03 73_[+3(3.48e-07)]_6 chrX:156338-156438 4.41e-01 100 chrVII:535454-535861 1.88e-03 50_[-3(4.08e-07)]_29 chrIV:1461391-1462450 8.92e-01 100 chrXIII:767734-768611 2.37e-01 100 chrIV:132531-133523 1.57e-02 10_[+3(5.66e-06)]_69 chrXIII:480144-480920 6.80e-01 100 chrV:423523-425319 4.65e-01 100 chrXIII:411644-412555 3.16e-01 100 chrVIII:17725-18288 3.19e-02 62_[+3(1.31e-05)]_17 chrVII:701856-702668 6.55e-01 100 chrV:51863-52883 9.31e-02 77_[+3(3.32e-05)]_2 chrXVI:404501-405785 2.39e-01 100 chrV:434382-436028 3.33e-01 100 chrVI:148007-148459 2.31e-01 100 chrI:30083-30972 8.26e-01 100 chrVII:438975-440102 8.08e-01 100 chrII:544474-544788 4.29e-01 100 chrXVI:678912-679815 4.49e-01 100 chrXI:489979-491595 9.20e-01 100 chrXV:281667-282689 4.79e-15 35_[-2(1.27e-10)]_12_[-1(6.03e-12)]_\ 2 chrX:622837-622937 2.92e-02 27_[-3(2.32e-05)]_52 chrXIV:738568-740087 2.29e-02 48_[+3(5.95e-05)]_31 chrV:487029-487612 4.92e-07 68_[+1(9.09e-11)]_11 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************