Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.02023 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.06144 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.075487 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.025217 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/background Finished invoke: name: bg status: 0 time: 0.011427 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 784.644831 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 39.512759 Invoking: centrimo -seqlen 852 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.142727 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.41061 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/background -primary MDMBSGGRATCGAACCSVKGAYCTY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.646742 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/background -primary GSBYNBDTGGYYYAGTGGKTARAGSSN /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.629563 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/background -primary TYMTTTTTTTTTTTTTTTTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.496459 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/background -primary ACCAACTK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.285644 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/background -primary CGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.266372 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/background -primary AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.216253 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/background -primary GTTATGGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.231677 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/background -primary AGCKCGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.250848 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/background -primary CGTGYTAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.230455 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/background --motif MDMBSGGRATCGAACCSVKGAYCTY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa Finished invoke: name: fimo1 status: 0 time: 0.27331 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/background --motif GSBYNBDTGGYYYAGTGGKTARAGSSN /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa Finished invoke: name: fimo2 status: 0 time: 0.267132 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/background --motif TYMTTTTTTTTTTTTTTTTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa Finished invoke: name: fimo3 status: 0 time: 0.293429 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/background --motif ACCAACTK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa Finished invoke: name: fimo4 status: 0 time: 0.164196 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/background --motif CGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa Finished invoke: name: fimo5 status: 0 time: 0.171501 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/background --motif AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa Finished invoke: name: fimo6 status: 0 time: 0.165286 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/background --motif GTTATGGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa Finished invoke: name: fimo7 status: 0 time: 0.177334 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/background --motif AGCKCGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa Finished invoke: name: fimo8 status: 0 time: 0.16225 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/background --motif CGTGYTAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/BY4741--SWR1.fa Finished invoke: name: fimo9 status: 0 time: 0.181451 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWR1/summary.tsv Finished invoke: name: summary status: 0 time: 0.148869 Done