******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWI1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:6-1277 1.0000 100 chrI:81815-82354 1.0000 100 chrI:138784-139431 1.0000 100 chrI:141495-143679 1.0000 100 chrI:165951-166725 1.0000 100 chrI:180760-181545 1.0000 100 chrI:182324-182835 1.0000 100 chrI:229103-230189 1.0000 100 chrII:9270-10018 1.0000 100 chrII:36094-36619 1.0000 100 chrII:44911-46153 1.0000 100 chrII:59438-61362 1.0000 100 chrII:87998-88587 1.0000 100 chrII:88912-90032 1.0000 100 chrII:164829-165599 1.0000 100 chrII:167120-169536 1.0000 100 chrII:181280-181692 1.0000 100 chrII:196977-198301 1.0000 100 chrII:226769-227757 1.0000 100 chrII:265432-266749 1.0000 100 chrII:326539-327249 1.0000 100 chrII:332039-333508 1.0000 100 chrII:347319-348315 1.0000 100 chrII:350479-351150 1.0000 100 chrII:372806-373529 1.0000 100 chrII:405510-406301 1.0000 100 chrII:414774-416018 1.0000 100 chrII:476894-477831 1.0000 100 chrII:504463-504718 1.0000 100 chrII:555545-558394 1.0000 100 chrII:592278-593330 1.0000 100 chrII:604006-607052 1.0000 100 chrII:642839-643454 1.0000 100 chrII:644951-645478 1.0000 100 chrII:681436-682293 1.0000 100 chrIII:4-1545 1.0000 100 chrIII:13926-17377 1.0000 100 chrIII:28769-32282 1.0000 100 chrIII:68319-68693 1.0000 100 chrIII:78233-78944 1.0000 100 chrIII:82116-83112 1.0000 100 chrIII:123360-125477 1.0000 100 chrIII:127493-128004 1.0000 100 chrIII:141736-143298 1.0000 100 chrIII:161974-163955 1.0000 100 chrIII:167861-168663 1.0000 100 chrIII:168879-169842 1.0000 100 chrIII:176324-179228 1.0000 100 chrIII:227618-228249 1.0000 100 chrIII:228767-229339 1.0000 100 chrIII:294592-295946 1.0000 100 chrIII:315605-316615 1.0000 100 chrIV:29-397 1.0000 100 chrIV:83168-83857 1.0000 100 chrIV:116324-118881 1.0000 100 chrIV:125289-125668 1.0000 100 chrIV:129476-131154 1.0000 100 chrIV:132709-133631 1.0000 100 chrIV:217092-218669 1.0000 100 chrIV:220874-222426 1.0000 100 chrIV:229361-230393 1.0000 100 chrIV:307646-310192 1.0000 100 chrIV:321581-322709 1.0000 100 chrIV:323022-323620 1.0000 100 chrIV:340107-341729 1.0000 100 chrIV:357980-358535 1.0000 100 chrIV:359258-359892 1.0000 100 chrIV:410098-410739 1.0000 100 chrIV:411179-411755 1.0000 100 chrIV:433906-435108 1.0000 100 chrIV:437430-438251 1.0000 100 chrIV:465058-465829 1.0000 100 chrIV:488381-489255 1.0000 100 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chrXVI:55586-56618 1.0000 100 chrXVI:66668-67440 1.0000 100 chrXVI:75965-76765 1.0000 100 chrXVI:135375-135863 1.0000 100 chrXVI:172770-174152 1.0000 100 chrXVI:188478-189069 1.0000 100 chrXVI:209809-210610 1.0000 100 chrXVI:214600-215288 1.0000 100 chrXVI:279752-280269 1.0000 100 chrXVI:280612-282767 1.0000 100 chrXVI:302563-304456 1.0000 100 chrXVI:338617-339186 1.0000 100 chrXVI:352240-352746 1.0000 100 chrXVI:377901-379051 1.0000 100 chrXVI:406011-407237 1.0000 100 chrXVI:434966-436302 1.0000 100 chrXVI:520082-520730 1.0000 100 chrXVI:559957-560921 1.0000 100 chrXVI:571658-572662 1.0000 100 chrXVI:581554-582408 1.0000 100 chrXVI:621951-622923 1.0000 100 chrXVI:641221-641720 1.0000 100 chrXVI:645263-646217 1.0000 100 chrXVI:653530-654766 1.0000 100 chrXVI:678940-679841 1.0000 100 chrXVI:689031-689933 1.0000 100 chrXVI:699839-700784 1.0000 100 chrXVI:701808-702344 1.0000 100 chrXVI:718490-719438 1.0000 100 chrXVI:731563-732424 1.0000 100 chrXVI:743855-744783 1.0000 100 chrXVI:768937-770310 1.0000 100 chrXVI:770514-771874 1.0000 100 chrXVI:775569-776944 1.0000 100 chrXVI:794381-796020 1.0000 100 chrXVI:810373-810910 1.0000 100 chrXVI:812455-813405 1.0000 100 chrXVI:819233-819862 1.0000 100 chrXVI:856191-857282 1.0000 100 chrXVI:859520-860651 1.0000 100 chrXVI:880033-881125 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWI1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWI1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWI1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 557 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 55700 N= 557 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.308 C 0.192 G 0.192 T 0.308 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SWI1/background): A 0.318 C 0.182 G 0.182 T 0.318 ******************************************************************************** ******************************************************************************** MOTIF RAGRTCVBSGGTTCGANYCCS MEME-1 width = 21 sites = 78 llr = 1275 E-value = 1.1e-226 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAGRTCVBSGGTTCGANYCCS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 46231:4:12::::3a2:::: pos.-specific C :121183331:::a::25a76 probability G 53652:3467a:::7:3::13 matrix T 1:1162:3:::aa:::45:21 bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 * ** * * Relative 1.5 * **** * * Entropy 1.2 * ******* ** (23.6 bits) 1.0 * ******* **** 0.7 * * * ******** **** 0.5 **************** **** 0.2 **************** **** 0.0 --------------------- Multilevel GAGGTCAGGGGTTCGATTCCC consensus AG A TCCCA A GC TG sequence GT C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCVBSGGTTCGANYCCS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIII:480332-480963 - 34 3.06e-11 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrX:414672-415336 + 54 3.06e-11 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrVII:876099-876746 + 64 3.06e-11 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrVII:185282-186118 - 74 3.06e-11 AATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrVII:121927-122654 + 71 3.06e-11 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGC chrVI:226466-227003 - 14 3.06e-11 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrV:134916-135960 - 47 3.06e-11 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrIV:1201368-1202240 + 38 3.06e-11 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrXVI:819233-819862 + 75 9.06e-11 TAATAACGCG GGGATCAGCGGTTCGATCCCG CTAGA chrXIV:602101-602632 + 39 9.06e-11 TAATAACGCG GGGATCAGCGGTTCGATCCCG CTAGAGACCA chrXIV:569572-570161 - 61 9.06e-11 TAATAACGCG GGGATCAGCGGTTCGATCCCG CTAGAGACCA chrV:442917-443576 - 16 9.06e-11 TAATAACGCG GGGATCAGCGGTTCGATCCCG CTAGAGACCA chrV:311756-312383 - 14 9.06e-11 TTGCAAGGAA GAGGTCATCGGTTCGATTCCG GTTGCGTCCA chrIX:183004-183946 - 25 9.06e-11 TAATAACGCG GGGATCAGCGGTTCGATCCCG CTAGAGACCA chrIV:667743-668290 - 51 9.06e-11 TAATAACGCG GGGATCAGCGGTTCGATCCCG CTAGAGACCA chrI:165951-166725 + 21 9.06e-11 TTGCAAGGAA GAGGTCATCGGTTCGATTCCG GTTGCGTCCA chrXII:875199-875682 + 51 1.50e-10 AGGATACCGA AATGTCAGGGGTTCGAGCCCC CTATGAGGAG chrXI:578730-579327 + 52 1.50e-10 AGGATACCGA AATGTCAGGGGTTCGAGCCCC CTATGAGGAG chrVII:114938-116112 + 78 1.50e-10 AGGATACCGA AATGTCAGGGGTTCGAGCCCC CT chrXVI:209809-210610 - 43 6.79e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrXI:46288-47149 - 77 6.79e-10 GCG GGGATCGTGGGTTCAATTCCC ACAGAGGGCA chrVII:541538-542227 + 59 6.79e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrV:486908-487768 - 53 6.79e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrV:176765-177456 + 80 6.79e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCC chrII:644951-645478 + 44 6.79e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrXV:980400-981103 + 56 7.81e-10 AAGCATGCGA GAGGCCCTGGGTTCAATTCCC AGCTCGCCCC chrXIV:567828-568643 + 2 7.81e-10 A GAGGCCCTGGGTTCAATTCCC AGCTCGCCCC chrXIV:546905-547410 + 59 7.81e-10 AAGCATGCGA GAGGCCCTGGGTTCAATTCCC AGCTCGCCCC chrX:355032-355780 + 59 7.81e-10 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrVII:405251-405831 + 20 7.81e-10 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrVI:101089-101891 + 8 7.81e-10 CATGCGA GAGGCCCTGGGTTCAATTCCC AGCTCGCCCC chrII:405510-406301 + 64 7.81e-10 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrVII:700133-701374 + 23 2.54e-09 TGATCTCTTC GGAGGCGCGGGTTCAAACCCC GCGGGTATCA chrIV:488381-489255 - 39 4.11e-09 TTACACGGCG AAGATCCCGAGTTCGAACCTC GGTTGGATCA chrIV:410098-410739 + 53 4.11e-09 TAGCATGGGA GAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrXV:594050-594767 - 6 5.83e-09 TTCCCAAGCA TGAGGCCCGGGTTCGATTCCC GGCTT chrXIV:104568-105206 + 10 6.52e-09 AGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrX:58629-59603 - 44 6.52e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrIX:174756-175337 + 77 6.52e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATT chrXV:663461-664279 - 2 1.01e-08 TAACACGCAG AACGTCCCCAGTTCGATCCTG G chrXIII:372108-372812 - 45 1.01e-08 TAACACGCAG AACGTCCCCAGTTCGATCCTG GGCGAAATCA chrXI:379437-379967 + 71 1.01e-08 TAACACGCAG AACGTCCCCAGTTCGATCCTG GGCGAAATC chrVII:412046-412649 - 7 1.01e-08 TAACACGCAG AACGTCCCCAGTTCGATCCTG GGCGAA chrV:469197-469761 + 71 1.01e-08 TAACACGCAG AACGTCCCCAGTTCGATCCTG GGCGAAATC chrXIII:168488-169190 + 64 1.25e-08 ACGAAATCTT GAGATCGGGCGTTCGACTCGC CCCCGGGAGA chrVI:210407-210933 - 9 1.25e-08 ACGAAATCTT GAGATCGGGCGTTCGACTCGC CCCCGGGA chrVI:167227-167745 + 59 1.25e-08 ACGAAATCTT GAGATCGGGCGTTCGACTCGC CCCCGGGAGA chrIV:946124-946638 + 39 1.25e-08 ACGAAATCTT GAGATCGGGCGTTCGACTCGC CCCCGGGAGA chrII:196977-198301 - 50 1.25e-08 TTGCCATCGT TGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrXIV:102391-103175 + 26 2.54e-08 TGTTAATCGC AAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrVII:730869-731444 + 74 2.54e-08 TGTTAATCGC AAGATCGTGAGTTCAACCCTC ACTGGG chrVI:137116-137971 - 3 2.54e-08 TGTTAATCGC AAGATCGTGAGTTCAACCCTC AC chrIII:127493-128004 + 61 2.54e-08 TGTTAATCGC AAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXIII:807775-808683 - 77 8.33e-08 CCG AACAACCCCAGTTCGAATCCG GGTGGGACCT chrVII:878248-879280 - 6 9.87e-08 TTGCAATCGA AGGGTTGCAGGTTCAATTCCT GTCCG chrXII:167579-168422 - 4 1.07e-07 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCT GCA chrVII:561361-562000 - 42 1.07e-07 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCT GCAGTTGTCG chrIV:980639-981345 - 42 1.07e-07 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCT GCAGTTGTCG chrIV:437430-438251 + 33 1.07e-07 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCT GCAGTTGTCG chrI:182324-182835 - 3 1.07e-07 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCT GC chrXV:340016-340643 - 30 1.16e-07 TACGAACCAG AAGATTCCAGGTTCAAGTCCT GGCGGGGAAG chrV:492045-492624 - 78 1.16e-07 AG AAGATTCCAGGTTCAAGTCCT GGCGGGGAAG chrIV:619589-620399 - 35 1.16e-07 TACGAACCAG AAGATTCCAGGTTCAAGTCCT GGCGGGGAAG chrXIV:374612-375230 + 58 1.37e-07 AAGTCATCTG GAGGTCCTGTGTTCGATCCAC AGAGTTCGCA chrX:617746-618222 + 55 1.37e-07 TGATATCTTC GGATGCAAGGGTTCGAATCCC TTAGCTCTCA chrXIV:725868-726426 - 47 2.96e-07 TTGGACGGTT GTCCGCGCGAGTTCGAACCTC GCATCCTTCA chrII:9270-10018 + 42 2.96e-07 TTGGACGGTT GTCCGCGCGAGTTCGAACCTC GCATCCTTCA chrIX:323977-324704 - 23 4.85e-07 TTGTCGCGTG CCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrIV:568613-569366 + 66 4.85e-07 TTGTCGCGTG CCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrXVI:743855-744783 + 56 5.20e-07 TTGTAATGCA AAGGTCGTTAGTTCAATTCTG ACAGGTGGCA chrXV:274408-275029 + 75 5.56e-07 ATTGGGTTTT ACCTGCGCAGGTTCGAATCCT GTCTG chrXVI:338617-339186 - 7 9.95e-07 TCATAACCCT GATGTCCTCGGATCGAAACCG AGCGGC chrXV:709920-710512 + 76 9.95e-07 TCATAACCCT GATGTCCTCGGATCGAAACCG AGCG chrXII:1012102-1012437 - 12 1.91e-06 CATTTGCGTG TGGTGCATGGGTTCTATTCCT CATTAGCGCG chrVII:422773-423584 + 47 1.91e-06 AGGTATCGTA AGATGCAAGAGTTCGAATCTC TTAGCAACCA chrVII:204864-206333 + 56 1.91e-06 AGGTATCGTA AGATGCAAGAGTTCGAATCTC TTAGCAACCA chrVII:706881-707405 - 25 2.13e-06 TGCAAATCTG TTGGTCCTTAGTTCGATCCTG AGTGCGAGCT chrVIII:103826-106028 - 20 4.02e-06 ACTTCTTAGA AACGGTAGCAGTTCTAGCACC TCTTGGTAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCVBSGGTTCGANYCCS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:480332-480963 3.1e-11 33_[-1]_46 chrX:414672-415336 3.1e-11 53_[+1]_26 chrVII:876099-876746 3.1e-11 63_[+1]_16 chrVII:185282-186118 3.1e-11 73_[-1]_6 chrVII:121927-122654 3.1e-11 70_[+1]_9 chrVI:226466-227003 3.1e-11 13_[-1]_66 chrV:134916-135960 3.1e-11 46_[-1]_33 chrIV:1201368-1202240 3.1e-11 37_[+1]_42 chrXVI:819233-819862 9.1e-11 74_[+1]_5 chrXIV:602101-602632 9.1e-11 38_[+1]_41 chrXIV:569572-570161 9.1e-11 60_[-1]_19 chrV:442917-443576 9.1e-11 15_[-1]_64 chrV:311756-312383 9.1e-11 13_[-1]_66 chrIX:183004-183946 9.1e-11 24_[-1]_55 chrIV:667743-668290 9.1e-11 50_[-1]_29 chrI:165951-166725 9.1e-11 20_[+1]_59 chrXII:875199-875682 1.5e-10 50_[+1]_29 chrXI:578730-579327 1.5e-10 51_[+1]_28 chrVII:114938-116112 1.5e-10 77_[+1]_2 chrXVI:209809-210610 6.8e-10 42_[-1]_37 chrXI:46288-47149 6.8e-10 76_[-1]_3 chrVII:541538-542227 6.8e-10 58_[+1]_21 chrV:486908-487768 6.8e-10 52_[-1]_27 chrV:176765-177456 6.8e-10 79_[+1] chrII:644951-645478 6.8e-10 43_[+1]_36 chrXV:980400-981103 7.8e-10 55_[+1]_24 chrXIV:567828-568643 7.8e-10 1_[+1]_78 chrXIV:546905-547410 7.8e-10 58_[+1]_21 chrX:355032-355780 7.8e-10 58_[+1]_21 chrVII:405251-405831 7.8e-10 19_[+1]_60 chrVI:101089-101891 7.8e-10 7_[+1]_72 chrII:405510-406301 7.8e-10 63_[+1]_16 chrVII:700133-701374 2.5e-09 22_[+1]_57 chrIV:488381-489255 4.1e-09 38_[-1]_41 chrIV:410098-410739 4.1e-09 52_[+1]_27 chrXV:594050-594767 5.8e-09 5_[-1]_74 chrXIV:104568-105206 6.5e-09 9_[+1]_70 chrX:58629-59603 6.5e-09 43_[-1]_36 chrIX:174756-175337 6.5e-09 76_[+1]_3 chrXV:663461-664279 1e-08 1_[-1]_78 chrXIII:372108-372812 1e-08 44_[-1]_35 chrXI:379437-379967 1e-08 70_[+1]_9 chrVII:412046-412649 1e-08 6_[-1]_73 chrV:469197-469761 1e-08 70_[+1]_9 chrXIII:168488-169190 1.3e-08 63_[+1]_16 chrVI:210407-210933 1.3e-08 8_[-1]_71 chrVI:167227-167745 1.3e-08 58_[+1]_21 chrIV:946124-946638 1.3e-08 38_[+1]_41 chrII:196977-198301 1.3e-08 49_[-1]_30 chrXIV:102391-103175 2.5e-08 25_[+1]_54 chrVII:730869-731444 2.5e-08 73_[+1]_6 chrVI:137116-137971 2.5e-08 2_[-1]_77 chrIII:127493-128004 2.5e-08 60_[+1]_19 chrXIII:807775-808683 8.3e-08 76_[-1]_3 chrVII:878248-879280 9.9e-08 5_[-1]_74 chrXII:167579-168422 1.1e-07 3_[-1]_76 chrVII:561361-562000 1.1e-07 41_[-1]_38 chrIV:980639-981345 1.1e-07 41_[-1]_38 chrIV:437430-438251 1.1e-07 32_[+1]_47 chrI:182324-182835 1.1e-07 2_[-1]_77 chrXV:340016-340643 1.2e-07 29_[-1]_50 chrV:492045-492624 1.2e-07 77_[-1]_2 chrIV:619589-620399 1.2e-07 34_[-1]_45 chrXIV:374612-375230 1.4e-07 57_[+1]_22 chrX:617746-618222 1.4e-07 54_[+1]_25 chrXIV:725868-726426 3e-07 46_[-1]_33 chrII:9270-10018 3e-07 41_[+1]_38 chrIX:323977-324704 4.9e-07 22_[-1]_57 chrIV:568613-569366 4.9e-07 65_[+1]_14 chrXVI:743855-744783 5.2e-07 55_[+1]_24 chrXV:274408-275029 5.6e-07 74_[+1]_5 chrXVI:338617-339186 1e-06 6_[-1]_73 chrXV:709920-710512 1e-06 75_[+1]_4 chrXII:1012102-1012437 1.9e-06 11_[-1]_68 chrVII:422773-423584 1.9e-06 46_[+1]_33 chrVII:204864-206333 1.9e-06 55_[+1]_24 chrVII:706881-707405 2.1e-06 24_[-1]_55 chrVIII:103826-106028 4e-06 19_[-1]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCVBSGGTTCGANYCCS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAGRTCVBSGGTTCGANYCCS width=21 seqs=78 chrXIII:480332-480963 ( 34) AAGGTTAGGGGTTCGAGCCCC 1 chrX:414672-415336 ( 54) AAGGTTAGGGGTTCGAGCCCC 1 chrVII:876099-876746 ( 64) AAGGTTAGGGGTTCGAGCCCC 1 chrVII:185282-186118 ( 74) AAGGTTAGGGGTTCGAGCCCC 1 chrVII:121927-122654 ( 71) AAGGTTAGGGGTTCGAGCCCC 1 chrVI:226466-227003 ( 14) AAGGTTAGGGGTTCGAGCCCC 1 chrV:134916-135960 ( 47) AAGGTTAGGGGTTCGAGCCCC 1 chrIV:1201368-1202240 ( 38) AAGGTTAGGGGTTCGAGCCCC 1 chrXVI:819233-819862 ( 75) GGGATCAGCGGTTCGATCCCG 1 chrXIV:602101-602632 ( 39) GGGATCAGCGGTTCGATCCCG 1 chrXIV:569572-570161 ( 61) GGGATCAGCGGTTCGATCCCG 1 chrV:442917-443576 ( 16) GGGATCAGCGGTTCGATCCCG 1 chrV:311756-312383 ( 14) GAGGTCATCGGTTCGATTCCG 1 chrIX:183004-183946 ( 25) GGGATCAGCGGTTCGATCCCG 1 chrIV:667743-668290 ( 51) GGGATCAGCGGTTCGATCCCG 1 chrI:165951-166725 ( 21) GAGGTCATCGGTTCGATTCCG 1 chrXII:875199-875682 ( 51) AATGTCAGGGGTTCGAGCCCC 1 chrXI:578730-579327 ( 52) AATGTCAGGGGTTCGAGCCCC 1 chrVII:114938-116112 ( 78) AATGTCAGGGGTTCGAGCCCC 1 chrXVI:209809-210610 ( 43) GGAGACCGGGGTTCGACTCCC 1 chrXI:46288-47149 ( 77) GGGATCGTGGGTTCAATTCCC 1 chrVII:541538-542227 ( 59) GGAGACCGGGGTTCGACTCCC 1 chrV:486908-487768 ( 53) GGAGACCGGGGTTCGACTCCC 1 chrV:176765-177456 ( 80) GGAGACCGGGGTTCGACTCCC 1 chrII:644951-645478 ( 44) GGAGACCGGGGTTCGACTCCC 1 chrXV:980400-981103 ( 56) GAGGCCCTGGGTTCAATTCCC 1 chrXIV:567828-568643 ( 2) GAGGCCCTGGGTTCAATTCCC 1 chrXIV:546905-547410 ( 59) GAGGCCCTGGGTTCAATTCCC 1 chrX:355032-355780 ( 59) AAGATTATGGGTTCGACCCCC 1 chrVII:405251-405831 ( 20) AAGATTATGGGTTCGACCCCC 1 chrVI:101089-101891 ( 8) GAGGCCCTGGGTTCAATTCCC 1 chrII:405510-406301 ( 64) AAGATTATGGGTTCGACCCCC 1 chrVII:700133-701374 ( 23) GGAGGCGCGGGTTCAAACCCC 1 chrIV:488381-489255 ( 39) AAGATCCCGAGTTCGAACCTC 1 chrIV:410098-410739 ( 53) GAGGTCTCCGGTTCGATTCCG 1 chrXV:594050-594767 ( 6) TGAGGCCCGGGTTCGATTCCC 1 chrXIV:104568-105206 ( 10) GAGATCATCGGTTCAAATCCG 1 chrX:58629-59603 ( 44) GAGATCATCGGTTCAAATCCG 1 chrIX:174756-175337 ( 77) GAGATCATCGGTTCAAATCCG 1 chrXV:663461-664279 ( 2) AACGTCCCCAGTTCGATCCTG 1 chrXIII:372108-372812 ( 45) AACGTCCCCAGTTCGATCCTG 1 chrXI:379437-379967 ( 71) AACGTCCCCAGTTCGATCCTG 1 chrVII:412046-412649 ( 7) AACGTCCCCAGTTCGATCCTG 1 chrV:469197-469761 ( 71) AACGTCCCCAGTTCGATCCTG 1 chrXIII:168488-169190 ( 64) GAGATCGGGCGTTCGACTCGC 1 chrVI:210407-210933 ( 9) GAGATCGGGCGTTCGACTCGC 1 chrVI:167227-167745 ( 59) GAGATCGGGCGTTCGACTCGC 1 chrIV:946124-946638 ( 39) GAGATCGGGCGTTCGACTCGC 1 chrII:196977-198301 ( 50) TGGGCCCCCGGTTCGATTCCG 1 chrXIV:102391-103175 ( 26) AAGATCGTGAGTTCAACCCTC 1 chrVII:730869-731444 ( 74) AAGATCGTGAGTTCAACCCTC 1 chrVI:137116-137971 ( 3) AAGATCGTGAGTTCAACCCTC 1 chrIII:127493-128004 ( 61) AAGATCGTGAGTTCAACCCTC 1 chrXIII:807775-808683 ( 77) AACAACCCCAGTTCGAATCCG 1 chrVII:878248-879280 ( 6) AGGGTTGCAGGTTCAATTCCT 1 chrXII:167579-168422 ( 4) GCCCGCGCAGGTTCGAGTCCT 1 chrVII:561361-562000 ( 42) GCCCGCGCAGGTTCGAGTCCT 1 chrIV:980639-981345 ( 42) GCCCGCGCAGGTTCGAGTCCT 1 chrIV:437430-438251 ( 33) GCCCGCGCAGGTTCGAGTCCT 1 chrI:182324-182835 ( 3) GCCCGCGCAGGTTCGAGTCCT 1 chrXV:340016-340643 ( 30) AAGATTCCAGGTTCAAGTCCT 1 chrV:492045-492624 ( 78) AAGATTCCAGGTTCAAGTCCT 1 chrIV:619589-620399 ( 35) AAGATTCCAGGTTCAAGTCCT 1 chrXIV:374612-375230 ( 58) GAGGTCCTGTGTTCGATCCAC 1 chrX:617746-618222 ( 55) GGATGCAAGGGTTCGAATCCC 1 chrXIV:725868-726426 ( 47) GTCCGCGCGAGTTCGAACCTC 1 chrII:9270-10018 ( 42) GTCCGCGCGAGTTCGAACCTC 1 chrIX:323977-324704 ( 23) CCAGATCGGGGTTCAATTCCC 1 chrIV:568613-569366 ( 66) CCAGATCGGGGTTCAATTCCC 1 chrXVI:743855-744783 ( 56) AAGGTCGTTAGTTCAATTCTG 1 chrXV:274408-275029 ( 75) ACCTGCGCAGGTTCGAATCCT 1 chrXVI:338617-339186 ( 7) GATGTCCTCGGATCGAAACCG 1 chrXV:709920-710512 ( 76) GATGTCCTCGGATCGAAACCG 1 chrXII:1012102-1012437 ( 12) TGGTGCATGGGTTCTATTCCT 1 chrVII:422773-423584 ( 47) AGATGCAAGAGTTCGAATCTC 1 chrVII:204864-206333 ( 56) AGATGCAAGAGTTCGAATCTC 1 chrVII:706881-707405 ( 25) TTGGTCCTTAGTTCGATCCTG 1 chrVIII:103826-106028 ( 20) AACGGTAGCAGTTCTAGCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCVBSGGTTCGANYCCS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 44560 bayes= 9.37952 E= 1.1e-226 46 -283 142 -263 92 -83 49 -304 -105 8 169 -231 7 -102 149 -231 -163 -151 8 101 -1293 208 -1293 -46 28 93 49 -463 -304 69 103 -11 -131 63 163 -363 -46 -183 195 -463 -1293 -1293 246 -1293 -363 -1293 -1293 162 -1293 -1293 -1293 165 -1293 246 -1293 -1293 -31 -1293 198 -363 165 -1293 -1293 -1293 -82 17 49 18 -363 134 -1293 69 -463 244 -1293 -1293 -463 200 -183 -63 -1293 163 69 -117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCVBSGGTTCGANYCCS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 78 E= 1.1e-226 0.435897 0.025641 0.487179 0.051282 0.602564 0.102564 0.256410 0.038462 0.153846 0.192308 0.589744 0.064103 0.333333 0.089744 0.512821 0.064103 0.102564 0.064103 0.192308 0.641026 0.000000 0.769231 0.000000 0.230769 0.384615 0.346154 0.256410 0.012821 0.038462 0.294872 0.371795 0.294872 0.128205 0.282051 0.564103 0.025641 0.230769 0.051282 0.705128 0.012821 0.000000 0.000000 1.000000 0.000000 0.025641 0.000000 0.000000 0.974359 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.256410 0.000000 0.717949 0.025641 1.000000 0.000000 0.000000 0.000000 0.179487 0.205128 0.256410 0.358974 0.025641 0.461538 0.000000 0.512821 0.012821 0.987179 0.000000 0.000000 0.012821 0.730769 0.051282 0.205128 0.000000 0.564103 0.294872 0.141026 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTCVBSGGTTCGANYCCS MEME-1 regular expression -------------------------------------------------------------------------------- [GA][AG]G[GA]T[CT][ACG][GCT][GC][GA]GTTC[GA]A[TGC][TC]C[CT][CG] -------------------------------------------------------------------------------- Time 305.50 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGYYYAGTBGKTWRAGSS MEME-2 width = 19 sites = 78 llr = 1128 E-value = 5.4e-169 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGYYYAGTBGKTWRAGSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A :3:::2a1::::25652:: pos.-specific C :::754::12::1::2:54 probability G :7a:22:9:4a61:32744 matrix T a::332::94:47412111 bits 2.5 * 2.2 * * 2.0 * * * 1.7 * * * * Relative 1.5 *** ** * Entropy 1.2 **** *** ** (20.9 bits) 1.0 **** *** ** *** 0.7 ***** *** ** *** 0.5 ***** ********* *** 0.2 *************** *** 0.0 ------------------- Multilevel TGGCCCAGTGGGTAAAGCC consensus A TTT T T TG GG sequence G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYYYAGTBGKTWRAGSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------- chrXVI:819233-819862 + 39 4.05e-11 AATGGTCTCT TGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXIV:602101-602632 + 3 4.05e-11 CT TGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrV:442917-443576 - 54 4.05e-11 TTTGGTCTCT TGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIX:183004-183946 - 63 4.05e-11 CCTGGTCTCT TGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXV:853982-854516 - 35 3.20e-10 TCAGGGCACA TGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrXII:214666-215225 - 35 3.20e-10 TTAGGGCACA TGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrV:311756-312383 - 51 3.20e-10 TCTGGGCACA TGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrXV:274408-275029 + 12 6.14e-10 CGTGTCCCAG TGGCCGAGTGGTTAAGGCG ATGCCCTGCT chrXII:167579-168422 - 50 6.14e-10 TATGGCAACT TGGCCGAGTGGTTAAGGCG AAAGATTAGA chrX:523756-524402 - 39 6.14e-10 AAAGGCAACT TGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:1305325-1305939 + 55 6.14e-10 TAAGGCAACT TGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIII:227618-228249 + 66 6.14e-10 AATGGCACTA TGGCCGAGTGGTTAAGGCG AGAGACTCGA chrI:182324-182835 - 49 6.14e-10 TTTGGCAACT TGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXV:487153-487734 + 53 7.46e-10 TTAGACTCCA TGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXII:975708-976380 - 37 7.46e-10 AAAGACTCCA TGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXI:74285-74968 + 55 7.46e-10 TTAGACTCCA TGGCCAAGTTGGTTAAGGC GTGCGACTGT chrX:58629-59603 - 81 7.46e-10 A TGGCCAAGTTGGTAAGGCG CCACACTAGT chrVII:730869-731444 + 38 7.46e-10 AAAGACTCCA TGGCCAAGTTGGTTAAGGC GTGCGACTGT chrVI:137116-137971 - 41 7.46e-10 ACTGACTCCA TGGCCAAGTTGGTTAAGGC GTGCGACTGT chrIX:174756-175337 + 42 7.46e-10 CGAGCTTCTA TGGCCAAGTTGGTAAGGCG CCACACTAGT chrIII:127493-128004 + 25 7.46e-10 AATGACTCCA TGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXIII:320888-321577 - 12 2.28e-09 ATCGGGCGTG TGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrIV:410098-410739 + 18 2.28e-09 ATTGGGCGTG TGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrVII:114938-116112 + 20 3.77e-09 TCATCCTTGT TAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrIV:359258-359892 + 59 3.77e-09 TCATCCTTGT TAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXII:962722-963353 - 43 5.17e-09 GACGGAGGGT TGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXI:83883-84493 + 77 5.17e-09 TATGGAGGGT TGGCCGAGTGGTCTAAGGC GGCAG chrXV:663461-664279 - 40 1.43e-08 AGTGGTTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:420295-421049 - 14 1.43e-08 ACAGGTTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXI:379437-379967 + 35 1.43e-08 ATAGGTTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVIII:85097-85641 - 27 1.43e-08 TTTGGTTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:823166-823784 + 64 1.43e-08 AGTGGTTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:412046-412649 - 45 1.43e-08 ACTGGTTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrV:469197-469761 + 35 1.43e-08 ATTGGTTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:480332-480963 - 71 2.13e-08 GTAGCCTTGT TGGCGCAATCGGTAGCGCG TATGACTCTT chrX:414672-415336 + 19 2.13e-08 TTAGCCTTGT TGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:876099-876746 + 29 2.13e-08 ATAGCCTTGT TGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:121927-122654 + 36 2.13e-08 TTAGCCTTGT TGGCGCAATCGGTAGCGCG TATGACTCTT chrVI:226466-227003 - 51 2.13e-08 AATGCCTTGT TGGCGCAATCGGTAGCGCG TATGACTCTT chrIV:1201368-1202240 + 3 2.13e-08 GT TGGCGCAATCGGTAGCGCG TATGACTCTT chrXIV:374612-375230 + 5 5.06e-08 GACT TAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXIII:351991-352548 + 68 5.06e-08 TAAGCGGATT TAGCTCAGTTGGGAGAGCG CCAGACTGAA chrIV:1095077-1095791 - 52 5.06e-08 TTAGCGGACT TAGCTCAGTTGGGAGAGCG CCAGACTGAA chrI:180760-181545 + 46 5.68e-08 AGTGGTTGTT TGGCCGAGCGGTCTAAGGC GCCTGATTCA chrXII:605066-605695 - 77 8.86e-08 TCGTG TAGCTCAGTGGTTAGAGCT TCGTGCTTAT chrIV:884074-884725 + 19 8.86e-08 AATGCTCGTG TAGCTCAGTGGTTAGAGCT TCGTGCTTAT chrXIII:572600-573297 - 32 3.50e-07 ACAGCTTCAG TAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrIV:1175466-1176191 + 58 3.50e-07 AAAGCTTCAG TAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrXII:10965-12058 - 72 4.17e-07 GGGTAAGCGG TAGTGGAGTTGGATATGGG TAATTGGAGG chrX:745163-745733 + 49 4.17e-07 AGGGTAATGG TAGTGGAGTTGGATATGGG TAATTGGAGG chrXV:226353-226989 - 35 4.55e-07 TCAGCGCAAG TGGTTTAGTGGTAAAATCC AACGTTGCCA chrXIII:183639-184279 - 34 4.55e-07 ATCGCGCAAG TGGTTTAGTGGTAAAATCC AACGTTGCCA chrX:531431-532226 + 57 4.55e-07 TGAGCGCAAG TGGTTTAGTGGTAAAATCC AACGTTGCCA chrX:396466-397166 - 5 4.55e-07 TAAGCGCAAG TGGTTTAGTGGTAAAATCC AACG chrIV:992509-993117 + 76 4.55e-07 TGAGCGCAAG TGGTTTAGTGGTAAAATCC AACGTT chrXV:340016-340643 - 67 5.39e-07 CTGTTCCTCG TGGCCCAATGGTCACGGCG TCTGGCTACG chrIV:619589-620399 - 72 5.39e-07 TTGTTCCTCG TGGCCCAATGGTCACGGCG TCTGGCTACG chrXIII:168488-169190 + 13 5.85e-07 TCACTCTCGG TAGCCAAGTTGGTTTAAGG CGCAAGACTG chrX:542722-543334 - 41 5.85e-07 ATACTCTCGG TAGCCAAGTTGGTTTAAGG CGCAAGACTG chrVI:210407-210933 - 62 5.85e-07 CGACTCTCGG TAGCCAAGTTGGTTTAAGG CGCAAGACTG chrVI:167227-167745 + 8 5.85e-07 CTCTCGG TAGCCAAGTTGGTTTAAGG CGCAAGACTG chrIV:488381-489255 - 77 1.09e-06 TCCAA TGGTCCAGTGGTTCAAGAC GTCGCCTTTA chrXV:300752-301411 + 73 1.80e-06 ATCGGGCGTG TGGTCTAGTGGTATGATTC TCGCTTTGG chrXIII:195856-196504 - 15 1.80e-06 CAAGGGCGTG TGGTCTAGTGGTATGATTC TCGCTTTGGG chrVIII:388643-389315 - 41 1.80e-06 CATGGGCGTG TGGTCTAGTGGTATGATTC TCGCTTTGGG chrXV:594050-594767 - 42 2.51e-06 AACGCGCAAG TGGTTCAGTGGTTAGAATT TATGCTTCCC chrIV:1256828-1257367 - 7 2.51e-06 TTAGCGAAAG TGGTTCAGTGGTTAGAATT CATGCT chrXII:489248-489598 + 25 3.03e-06 CGATCAACTG TAGTTAAGCTGGTAAGAGC CTGACCGAGT chrXII:468693-469021 + 55 3.03e-06 CGATCAACTG TAGTTAAGCTGGTAAGAGC CTGACCGAGT chrXI:1-1143 + 34 3.03e-06 TCACGGCACT TGCCTCAGCGGTTTATACC CTGTGCAATT chrIV:29-397 - 75 3.03e-06 GAGTGGA TGGTTGAGTGGGGCAGGGT AACGAGTGGG chrXIV:783341-784314 + 49 5.13e-06 GGGTAAGTGG TAGTGGGGTTGGATATGGG TAATTGGAGG chrII:592278-593330 + 23 5.13e-06 ACCTTCATGA TGGCTCAGTCGTCTATTCA CACTGGATAG chrIV:1524063-1525656 - 49 6.04e-06 ACACGGCACT TGCCTCAGCGGTCTATACC CTGTGCCATT chrI:229103-230189 - 50 6.04e-06 ACACGGCACT TGCCTCAGCGGTCTATACC CTGTCCCATT chrIV:578997-581014 - 27 7.07e-06 AAGTAATATT TAGTGGAATTGGATATTCC AAAAAATTTA chrIV:644953-645501 - 22 7.44e-06 TACGGTCCTA TAGTGTAGTGGTTATCACT TTCGGTTTTG chrII:350479-351150 + 70 7.44e-06 AAGGGTTTTA TAGTGTAGTGGTTATCACT TTCGGTTTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYYYAGTBGKTWRAGSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:819233-819862 4.1e-11 38_[+2]_43 chrXIV:602101-602632 4.1e-11 2_[+2]_79 chrV:442917-443576 4.1e-11 53_[-2]_28 chrIX:183004-183946 4.1e-11 62_[-2]_19 chrXV:853982-854516 3.2e-10 34_[-2]_47 chrXII:214666-215225 3.2e-10 34_[-2]_47 chrV:311756-312383 3.2e-10 50_[-2]_31 chrXV:274408-275029 6.1e-10 11_[+2]_70 chrXII:167579-168422 6.1e-10 49_[-2]_32 chrX:523756-524402 6.1e-10 38_[-2]_43 chrIV:1305325-1305939 6.1e-10 54_[+2]_27 chrIII:227618-228249 6.1e-10 65_[+2]_16 chrI:182324-182835 6.1e-10 48_[-2]_33 chrXV:487153-487734 7.5e-10 52_[+2]_29 chrXII:975708-976380 7.5e-10 36_[-2]_45 chrXI:74285-74968 7.5e-10 54_[+2]_27 chrX:58629-59603 7.5e-10 80_[-2]_1 chrVII:730869-731444 7.5e-10 37_[+2]_44 chrVI:137116-137971 7.5e-10 40_[-2]_41 chrIX:174756-175337 7.5e-10 41_[+2]_40 chrIII:127493-128004 7.5e-10 24_[+2]_57 chrXIII:320888-321577 2.3e-09 11_[-2]_70 chrIV:410098-410739 2.3e-09 17_[+2]_64 chrVII:114938-116112 3.8e-09 19_[+2]_62 chrIV:359258-359892 3.8e-09 58_[+2]_23 chrXII:962722-963353 5.2e-09 42_[-2]_39 chrXI:83883-84493 5.2e-09 76_[+2]_5 chrXV:663461-664279 1.4e-08 39_[-2]_42 chrXIII:420295-421049 1.4e-08 13_[-2]_68 chrXI:379437-379967 1.4e-08 34_[+2]_47 chrVIII:85097-85641 1.4e-08 26_[-2]_55 chrVII:823166-823784 1.4e-08 63_[+2]_18 chrVII:412046-412649 1.4e-08 44_[-2]_37 chrV:469197-469761 1.4e-08 34_[+2]_47 chrXIII:480332-480963 2.1e-08 70_[-2]_11 chrX:414672-415336 2.1e-08 18_[+2]_63 chrVII:876099-876746 2.1e-08 28_[+2]_53 chrVII:121927-122654 2.1e-08 35_[+2]_46 chrVI:226466-227003 2.1e-08 50_[-2]_31 chrIV:1201368-1202240 2.1e-08 2_[+2]_79 chrXIV:374612-375230 5.1e-08 4_[+2]_77 chrXIII:351991-352548 5.1e-08 67_[+2]_14 chrIV:1095077-1095791 5.1e-08 51_[-2]_30 chrI:180760-181545 5.7e-08 45_[+2]_36 chrXII:605066-605695 8.9e-08 76_[-2]_5 chrIV:884074-884725 8.9e-08 18_[+2]_63 chrXIII:572600-573297 3.5e-07 31_[-2]_50 chrIV:1175466-1176191 3.5e-07 57_[+2]_24 chrXII:10965-12058 4.2e-07 71_[-2]_10 chrX:745163-745733 4.2e-07 48_[+2]_33 chrXV:226353-226989 4.5e-07 34_[-2]_47 chrXIII:183639-184279 4.5e-07 33_[-2]_48 chrX:531431-532226 4.5e-07 56_[+2]_25 chrX:396466-397166 4.5e-07 4_[-2]_77 chrIV:992509-993117 4.5e-07 75_[+2]_6 chrXV:340016-340643 5.4e-07 66_[-2]_15 chrIV:619589-620399 5.4e-07 71_[-2]_10 chrXIII:168488-169190 5.9e-07 12_[+2]_69 chrX:542722-543334 5.9e-07 40_[-2]_41 chrVI:210407-210933 5.9e-07 61_[-2]_20 chrVI:167227-167745 5.9e-07 7_[+2]_74 chrIV:488381-489255 1.1e-06 76_[-2]_5 chrXV:300752-301411 1.8e-06 72_[+2]_9 chrXIII:195856-196504 1.8e-06 14_[-2]_67 chrVIII:388643-389315 1.8e-06 40_[-2]_41 chrXV:594050-594767 2.5e-06 41_[-2]_40 chrIV:1256828-1257367 2.5e-06 6_[-2]_75 chrXII:489248-489598 3e-06 24_[+2]_57 chrXII:468693-469021 3e-06 54_[+2]_27 chrXI:1-1143 3e-06 33_[+2]_48 chrIV:29-397 3e-06 74_[-2]_7 chrXIV:783341-784314 5.1e-06 48_[+2]_33 chrII:592278-593330 5.1e-06 22_[+2]_59 chrIV:1524063-1525656 6e-06 48_[-2]_33 chrI:229103-230189 6e-06 49_[-2]_32 chrIV:578997-581014 7.1e-06 26_[-2]_55 chrIV:644953-645501 7.4e-06 21_[-2]_60 chrII:350479-351150 7.4e-06 69_[+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYYYAGTBGKTWRAGSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGYYYAGTBGKTWRAGSS width=19 seqs=78 chrXVI:819233-819862 ( 39) TGGCCCAGTTGGTTAAGGC 1 chrXIV:602101-602632 ( 3) TGGCCCAGTTGGTTAAGGC 1 chrV:442917-443576 ( 54) TGGCCCAGTTGGTTAAGGC 1 chrIX:183004-183946 ( 63) TGGCCCAGTTGGTTAAGGC 1 chrXV:853982-854516 ( 35) TGGCGCAGTTGGTAGCGCG 1 chrXII:214666-215225 ( 35) TGGCGCAGTTGGTAGCGCG 1 chrV:311756-312383 ( 51) TGGCGCAGTTGGTAGCGCG 1 chrXV:274408-275029 ( 12) TGGCCGAGTGGTTAAGGCG 1 chrXII:167579-168422 ( 50) TGGCCGAGTGGTTAAGGCG 1 chrX:523756-524402 ( 39) TGGCCGAGTGGTTAAGGCG 1 chrIV:1305325-1305939 ( 55) TGGCCGAGTGGTTAAGGCG 1 chrIII:227618-228249 ( 66) TGGCCGAGTGGTTAAGGCG 1 chrI:182324-182835 ( 49) TGGCCGAGTGGTTAAGGCG 1 chrXV:487153-487734 ( 53) TGGCCAAGTTGGTTAAGGC 1 chrXII:975708-976380 ( 37) TGGCCAAGTTGGTTAAGGC 1 chrXI:74285-74968 ( 55) TGGCCAAGTTGGTTAAGGC 1 chrX:58629-59603 ( 81) TGGCCAAGTTGGTAAGGCG 1 chrVII:730869-731444 ( 38) TGGCCAAGTTGGTTAAGGC 1 chrVI:137116-137971 ( 41) TGGCCAAGTTGGTTAAGGC 1 chrIX:174756-175337 ( 42) TGGCCAAGTTGGTAAGGCG 1 chrIII:127493-128004 ( 25) TGGCCAAGTTGGTTAAGGC 1 chrXIII:320888-321577 ( 12) TGGCGTAGTCGGTAGCGCG 1 chrIV:410098-410739 ( 18) TGGCGTAGTCGGTAGCGCG 1 chrVII:114938-116112 ( 20) TAGCTCAGTTGGTAGAGCG 1 chrIV:359258-359892 ( 59) TAGCTCAGTTGGTAGAGCG 1 chrXII:962722-963353 ( 43) TGGCCGAGTGGTCTAAGGC 1 chrXI:83883-84493 ( 77) TGGCCGAGTGGTCTAAGGC 1 chrXV:663461-664279 ( 40) TGGTCTAGTCGGTTATGGC 1 chrXIII:420295-421049 ( 14) TGGTCTAGTCGGTTATGGC 1 chrXI:379437-379967 ( 35) TGGTCTAGTCGGTTATGGC 1 chrVIII:85097-85641 ( 27) TGGTCTAGTCGGTTATGGC 1 chrVII:823166-823784 ( 64) TGGTCTAGTCGGTTATGGC 1 chrVII:412046-412649 ( 45) TGGTCTAGTCGGTTATGGC 1 chrV:469197-469761 ( 35) TGGTCTAGTCGGTTATGGC 1 chrXIII:480332-480963 ( 71) TGGCGCAATCGGTAGCGCG 1 chrX:414672-415336 ( 19) TGGCGCAATCGGTAGCGCG 1 chrVII:876099-876746 ( 29) TGGCGCAATCGGTAGCGCG 1 chrVII:121927-122654 ( 36) TGGCGCAATCGGTAGCGCG 1 chrVI:226466-227003 ( 51) TGGCGCAATCGGTAGCGCG 1 chrIV:1201368-1202240 ( 3) TGGCGCAATCGGTAGCGCG 1 chrXIV:374612-375230 ( 5) TAGCTCAGTTGGGAGAGCG 1 chrXIII:351991-352548 ( 68) TAGCTCAGTTGGGAGAGCG 1 chrIV:1095077-1095791 ( 52) TAGCTCAGTTGGGAGAGCG 1 chrI:180760-181545 ( 46) TGGCCGAGCGGTCTAAGGC 1 chrXII:605066-605695 ( 77) TAGCTCAGTGGTTAGAGCT 1 chrIV:884074-884725 ( 19) TAGCTCAGTGGTTAGAGCT 1 chrXIII:572600-573297 ( 32) TAGCTCAGTAGGAAGAGCG 1 chrIV:1175466-1176191 ( 58) TAGCTCAGTAGGAAGAGCG 1 chrXII:10965-12058 ( 72) TAGTGGAGTTGGATATGGG 1 chrX:745163-745733 ( 49) TAGTGGAGTTGGATATGGG 1 chrXV:226353-226989 ( 35) TGGTTTAGTGGTAAAATCC 1 chrXIII:183639-184279 ( 34) TGGTTTAGTGGTAAAATCC 1 chrX:531431-532226 ( 57) TGGTTTAGTGGTAAAATCC 1 chrX:396466-397166 ( 5) TGGTTTAGTGGTAAAATCC 1 chrIV:992509-993117 ( 76) TGGTTTAGTGGTAAAATCC 1 chrXV:340016-340643 ( 67) TGGCCCAATGGTCACGGCG 1 chrIV:619589-620399 ( 72) TGGCCCAATGGTCACGGCG 1 chrXIII:168488-169190 ( 13) TAGCCAAGTTGGTTTAAGG 1 chrX:542722-543334 ( 41) TAGCCAAGTTGGTTTAAGG 1 chrVI:210407-210933 ( 62) TAGCCAAGTTGGTTTAAGG 1 chrVI:167227-167745 ( 8) TAGCCAAGTTGGTTTAAGG 1 chrIV:488381-489255 ( 77) TGGTCCAGTGGTTCAAGAC 1 chrXV:300752-301411 ( 73) TGGTCTAGTGGTATGATTC 1 chrXIII:195856-196504 ( 15) TGGTCTAGTGGTATGATTC 1 chrVIII:388643-389315 ( 41) TGGTCTAGTGGTATGATTC 1 chrXV:594050-594767 ( 42) TGGTTCAGTGGTTAGAATT 1 chrIV:1256828-1257367 ( 7) TGGTTCAGTGGTTAGAATT 1 chrXII:489248-489598 ( 25) TAGTTAAGCTGGTAAGAGC 1 chrXII:468693-469021 ( 55) TAGTTAAGCTGGTAAGAGC 1 chrXI:1-1143 ( 34) TGCCTCAGCGGTTTATACC 1 chrIV:29-397 ( 75) TGGTTGAGTGGGGCAGGGT 1 chrXIV:783341-784314 ( 49) TAGTGGGGTTGGATATGGG 1 chrII:592278-593330 ( 23) TGGCTCAGTCGTCTATTCA 1 chrIV:1524063-1525656 ( 49) TGCCTCAGCGGTCTATACC 1 chrI:229103-230189 ( 50) TGCCTCAGCGGTCTATACC 1 chrIV:578997-581014 ( 27) TAGTGGAATTGGATATTCC 1 chrIV:644953-645501 ( 22) TAGTGTAGTGGTTATCACT 1 chrII:350479-351150 ( 70) TAGTGTAGTGGTTATCACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYYYAGTBGKTWRAGSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 45674 bayes= 9.4152 E= 5.4e-169 -1293 -1293 -1293 165 -24 -1293 200 -1293 -1293 -224 240 -1293 -1293 184 -1293 12 -1293 142 26 -11 -82 112 -2 -38 164 -1293 -383 -1293 -146 -1293 228 -1293 -1293 -124 -1293 154 -363 17 108 28 -1293 -1293 246 -1293 -1293 -1293 176 28 -82 -83 -183 107 73 -283 -1293 50 86 -283 81 -205 58 -13 -13 -72 -93 -1293 195 -131 -463 156 108 -231 -463 130 130 -182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYYYAGTBGKTWRAGSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 78 E= 5.4e-169 0.000000 0.000000 0.000000 1.000000 0.269231 0.000000 0.730769 0.000000 0.000000 0.038462 0.961538 0.000000 0.000000 0.653846 0.000000 0.346154 0.000000 0.487179 0.217949 0.294872 0.179487 0.397436 0.179487 0.243590 0.987179 0.000000 0.012821 0.000000 0.115385 0.000000 0.884615 0.000000 0.000000 0.076923 0.000000 0.923077 0.025641 0.205128 0.384615 0.384615 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.615385 0.384615 0.179487 0.102564 0.051282 0.666667 0.525641 0.025641 0.000000 0.448718 0.576923 0.025641 0.320513 0.076923 0.474359 0.166667 0.166667 0.192308 0.166667 0.000000 0.705128 0.128205 0.012821 0.538462 0.384615 0.064103 0.012821 0.448718 0.448718 0.089744 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYYYAGTBGKTWRAGSS MEME-2 regular expression -------------------------------------------------------------------------------- T[GA]G[CT][CTG][CT]AGT[GTC]G[GT]T[AT][AG]AG[CG][CG] -------------------------------------------------------------------------------- Time 587.63 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGAAGTTCTCCTCGAGGATATAGGAATC MEME-3 width = 29 sites = 11 llr = 337 E-value = 3.1e-048 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGAAGTTCTCCTCGAGGATATAGGAATC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a19a1::::1:::18::9:6:921aa11 pos.-specific C :::::1::9179:a2111::1::::::17 probability G ::9::8::::::::61991:1::89:::: matrix T a::1::aa1921a:1::::a2a1::::82 bits 2.5 * 2.2 * 2.0 * * * * ** * 1.7 *** * *** *** ** * * **** Relative 1.5 *** ***** *** ** * * **** Entropy 1.2 ************** **** ****** * (44.2 bits) 1.0 ************** ***** ******** 0.7 ******************** ******** 0.5 ******************** ******** 0.2 ***************************** 0.0 ----------------------------- Multilevel TAGAAGTTCTCCTCGAGGATATAGGAATC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGAAGTTCTCCTCGAGGATATAGGAATC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrIV:433906-435108 + 45 4.59e-18 CAGAATATAC TAGAAGTTCTCCTCGAGGATATAGGAATC CACAAAAGGG chrIII:294592-295946 - 4 4.59e-18 TAGAATATAC TAGAAGTTCTCCTCGAGGATATAGGAATC CTC chrVIII:132774-135077 - 26 9.19e-18 CACAATATAC TAGAAGTTCTCCTCGAGGATTTAGGAATC CTCAAAATGG chrX:540660-541786 + 1 1.04e-16 . TAGAAGTTCTCCTCCAGGATTTAGGAATC CATAAAAGGG chrXIII:378574-379688 - 32 3.40e-15 CAGAATATAC TAGAACTTCTTCTCGAGGATGTAGGAATC GTCAAAAGGG chrXV:227241-228633 + 45 4.42e-15 CAGATTATAA TAGAAATTTTCCTCGAGGATATAGGAATC CTCAAAAAGG chrXII:592303-593249 + 59 9.08e-15 AAGAATAAAC TAGAAGTTCTCCTCGAGGATATAGAAACT CTCAAATGGA chrXV:113321-114052 + 51 1.91e-14 ATTTGATAAT TAGTAGTTCTTCTCCGGGATATAGGAATC AACAAAAGGA chrXI:457435-459054 + 26 1.29e-13 CAGAATATAC TAGAAGTTCTCCTCTCCGGTCTAGGAATC CCCAAAATGG chrIV:1461487-1462479 - 30 2.60e-12 CTGAATATGC TAGAAGTTCCACTCAAGCATATAAGAATA TCTGCCTAAA chrXI:490033-491320 - 62 3.35e-12 CACAATATAC TAAAAGTTCTCTTCGAGGATATTAGAAAT GCGGAAGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGAAGTTCTCCTCGAGGATATAGGAATC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:433906-435108 4.6e-18 44_[+3]_27 chrIII:294592-295946 4.6e-18 3_[-3]_68 chrVIII:132774-135077 9.2e-18 25_[-3]_46 chrX:540660-541786 1e-16 [+3]_71 chrXIII:378574-379688 3.4e-15 31_[-3]_40 chrXV:227241-228633 4.4e-15 44_[+3]_27 chrXII:592303-593249 9.1e-15 58_[+3]_13 chrXV:113321-114052 1.9e-14 50_[+3]_21 chrXI:457435-459054 1.3e-13 25_[+3]_46 chrIV:1461487-1462479 2.6e-12 29_[-3]_42 chrXI:490033-491320 3.3e-12 61_[-3]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGAAGTTCTCCTCGAGGATATAGGAATC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGAAGTTCTCCTCGAGGATATAGGAATC width=29 seqs=11 chrIV:433906-435108 ( 45) TAGAAGTTCTCCTCGAGGATATAGGAATC 1 chrIII:294592-295946 ( 4) TAGAAGTTCTCCTCGAGGATATAGGAATC 1 chrVIII:132774-135077 ( 26) TAGAAGTTCTCCTCGAGGATTTAGGAATC 1 chrX:540660-541786 ( 1) TAGAAGTTCTCCTCCAGGATTTAGGAATC 1 chrXIII:378574-379688 ( 32) TAGAACTTCTTCTCGAGGATGTAGGAATC 1 chrXV:227241-228633 ( 45) TAGAAATTTTCCTCGAGGATATAGGAATC 1 chrXII:592303-593249 ( 59) TAGAAGTTCTCCTCGAGGATATAGAAACT 1 chrXV:113321-114052 ( 51) TAGTAGTTCTTCTCCGGGATATAGGAATC 1 chrXI:457435-459054 ( 26) TAGAAGTTCTCCTCTCCGGTCTAGGAATC 1 chrIV:1461487-1462479 ( 30) TAGAAGTTCCACTCAAGCATATAAGAATA 1 chrXI:490033-491320 ( 62) TAAAAGTTCTCTTCGAGGATATTAGAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGAAGTTCTCCTCGAGGATATAGGAATC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 40104 bayes= 11.384 E= 3.1e-048 -1010 -1010 -1010 165 165 -1010 -1010 -1010 -180 -1010 232 -1010 152 -1010 -1010 -180 165 -1010 -1010 -1010 -180 -100 217 -1010 -1010 -1010 -1010 165 -1010 -1010 -1010 165 -1010 232 -1010 -180 -1010 -100 -1010 152 -180 200 -1010 -80 -1010 232 -1010 -180 -1010 -1010 -1010 165 -1010 245 -1010 -1010 -180 0 180 -180 136 -100 -100 -1010 -1010 -100 232 -1010 -1010 -100 232 -1010 152 -1010 -100 -1010 -1010 -1010 -1010 165 100 -100 -100 -80 -1010 -1010 -1010 165 152 -1010 -1010 -180 -80 -1010 217 -1010 -180 -1010 232 -1010 165 -1010 -1010 -1010 165 -1010 -1010 -1010 -180 -100 -1010 136 -180 200 -1010 -80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGAAGTTCTCCTCGAGGATATAGGAATC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 11 E= 3.1e-048 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.909091 0.000000 0.909091 0.000000 0.000000 0.090909 1.000000 0.000000 0.000000 0.000000 0.090909 0.090909 0.818182 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.909091 0.000000 0.090909 0.000000 0.090909 0.000000 0.909091 0.090909 0.727273 0.000000 0.181818 0.000000 0.909091 0.000000 0.090909 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.090909 0.181818 0.636364 0.090909 0.818182 0.090909 0.090909 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 0.090909 0.909091 0.000000 0.909091 0.000000 0.090909 0.000000 0.000000 0.000000 0.000000 1.000000 0.636364 0.090909 0.090909 0.181818 0.000000 0.000000 0.000000 1.000000 0.909091 0.000000 0.000000 0.090909 0.181818 0.000000 0.818182 0.000000 0.090909 0.000000 0.909091 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.090909 0.090909 0.000000 0.818182 0.090909 0.727273 0.000000 0.181818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGAAGTTCTCCTCGAGGATATAGGAATC MEME-3 regular expression -------------------------------------------------------------------------------- TAGAAGTTCTCCTCGAGGATATAGGAATC -------------------------------------------------------------------------------- Time 863.25 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6-1277 6.21e-01 100 chrI:81815-82354 4.13e-01 100 chrI:138784-139431 2.66e-01 100 chrI:141495-143679 6.36e-01 100 chrI:165951-166725 1.06e-06 20_[+1(9.06e-11)]_59 chrI:180760-181545 3.33e-04 45_[+2(5.68e-08)]_36 chrI:182324-182835 5.45e-10 2_[-1(1.07e-07)]_25_[-2(6.14e-10)]_\ 33 chrI:229103-230189 8.92e-03 49_[-2(6.04e-06)]_32 chrII:9270-10018 8.51e-04 41_[+1(2.96e-07)]_38 chrII:36094-36619 3.57e-01 100 chrII:44911-46153 2.17e-01 100 chrII:59438-61362 7.38e-01 100 chrII:87998-88587 6.78e-01 100 chrII:88912-90032 7.09e-01 100 chrII:164829-165599 4.35e-01 100 chrII:167120-169536 5.28e-01 100 chrII:181280-181692 9.89e-01 100 chrII:196977-198301 8.33e-05 49_[-1(1.25e-08)]_30 chrII:226769-227757 8.61e-01 100 chrII:265432-266749 4.32e-01 100 chrII:326539-327249 9.48e-02 100 chrII:332039-333508 3.75e-01 100 chrII:347319-348315 4.54e-01 100 chrII:350479-351150 2.18e-02 69_[+2(7.44e-06)]_12 chrII:372806-373529 8.12e-01 100 chrII:405510-406301 5.01e-06 63_[+1(7.81e-10)]_16 chrII:414774-416018 2.08e-01 100 chrII:476894-477831 3.09e-01 100 chrII:504463-504718 1.55e-01 100 chrII:555545-558394 2.60e-01 100 chrII:592278-593330 2.12e-02 22_[+2(5.13e-06)]_59 chrII:604006-607052 2.00e-01 100 chrII:642839-643454 1.64e-01 100 chrII:644951-645478 1.75e-06 43_[+1(6.79e-10)]_36 chrII:681436-682293 5.89e-01 100 chrIII:4-1545 9.43e-01 100 chrIII:13926-17377 6.83e-01 100 chrIII:28769-32282 8.33e-01 100 chrIII:68319-68693 9.87e-01 100 chrIII:78233-78944 9.13e-01 100 chrIII:82116-83112 4.28e-01 100 chrIII:123360-125477 8.71e-01 100 chrIII:127493-128004 9.00e-11 24_[+2(7.46e-10)]_17_[+1(2.54e-08)]_\ 19 chrIII:141736-143298 2.54e-01 100 chrIII:161974-163955 1.41e-01 100 chrIII:167861-168663 9.89e-01 100 chrIII:168879-169842 4.76e-01 100 chrIII:176324-179228 7.71e-01 100 chrIII:227618-228249 7.37e-06 65_[+2(6.14e-10)]_16 chrIII:228767-229339 5.84e-01 100 chrIII:294592-295946 2.43e-13 3_[-3(4.59e-18)]_68 chrIII:315605-316615 6.06e-01 100 chrIV:29-397 3.21e-03 74_[-2(3.03e-06)]_7 chrIV:83168-83857 6.02e-01 100 chrIV:116324-118881 1.91e-01 100 chrIV:125289-125668 4.62e-02 48_[+1(4.97e-05)]_31 chrIV:129476-131154 8.04e-01 100 chrIV:132709-133631 2.37e-01 100 chrIV:217092-218669 8.16e-01 100 chrIV:220874-222426 6.29e-01 100 chrIV:229361-230393 2.06e-01 100 chrIV:307646-310192 1.75e-01 100 chrIV:321581-322709 9.60e-02 100 chrIV:323022-323620 7.98e-01 100 chrIV:340107-341729 8.09e-01 100 chrIV:357980-358535 9.70e-01 100 chrIV:359258-359892 1.89e-05 58_[+2(3.77e-09)]_23 chrIV:410098-410739 8.19e-12 17_[+2(2.28e-09)]_16_[+1(4.11e-09)]_\ 27 chrIV:411179-411755 4.22e-01 100 chrIV:433906-435108 3.08e-13 44_[+3(4.59e-18)]_27 chrIV:437430-438251 2.04e-04 32_[+1(1.07e-07)]_47 chrIV:465058-465829 1.21e-01 100 chrIV:488381-489255 2.77e-08 38_[-1(4.11e-09)]_17_[-2(1.09e-06)]_\ 5 chrIV:490733-492651 9.04e-01 100 chrIV:519488-521217 3.84e-01 100 chrIV:525012-525393 6.64e-01 100 chrIV:541096-542533 8.51e-01 100 chrIV:542866-543099 9.69e-01 100 chrIV:568613-569366 1.83e-05 31_[+2(1.92e-05)]_15_[+1(4.85e-07)]_\ 14 chrIV:578997-581014 6.21e-03 26_[-2(7.07e-06)]_55 chrIV:619589-620399 5.71e-08 34_[-1(1.16e-07)]_16_[-2(5.39e-07)]_\ 10 chrIV:644953-645501 3.44e-03 21_[-2(7.44e-06)]_60 chrIV:667743-668290 1.85e-07 50_[-1(9.06e-11)]_29 chrIV:802161-803081 3.20e-01 100 chrIV:835708-836365 2.75e-01 100 chrIV:884074-884725 1.15e-04 18_[+2(8.86e-08)]_63 chrIV:946124-946638 7.28e-05 38_[+1(1.25e-08)]_41 chrIV:975878-976798 1.87e-01 100 chrIV:980639-981345 2.04e-04 41_[-1(1.07e-07)]_38 chrIV:992509-993117 1.92e-03 75_[+2(4.55e-07)]_6 chrIV:1012733-1013966 2.32e-01 100 chrIV:1016882-1018149 4.38e-01 100 chrIV:1075241-1075850 2.56e-01 100 chrIV:1080381-1080850 7.28e-02 100 chrIV:1095077-1095791 5.33e-04 51_[-2(5.06e-08)]_30 chrIV:1116778-1117100 7.55e-01 100 chrIV:1150317-1151743 8.81e-01 100 chrIV:1175466-1176191 2.46e-03 57_[+2(3.50e-07)]_24 chrIV:1201368-1202240 6.47e-12 2_[+2(2.13e-08)]_16_[+1(3.06e-11)]_\ 42 chrIV:1233632-1234263 3.65e-01 100 chrIV:1256828-1257367 7.21e-03 6_[-2(2.51e-06)]_75 chrIV:1300863-1301573 9.97e-01 100 chrIV:1305325-1305939 6.31e-06 54_[+2(6.14e-10)]_27 chrIV:1352282-1353070 5.50e-01 100 chrIV:1354459-1356398 3.96e-01 100 chrIV:1358267-1361138 8.73e-01 100 chrIV:1401011-1403412 9.62e-02 100 chrIV:1449817-1451356 5.23e-01 100 chrIV:1461487-1462479 1.96e-08 29_[-3(2.60e-12)]_42 chrIV:1468245-1469154 6.46e-01 100 chrIV:1488899-1490811 2.96e-01 100 chrIV:1524063-1525656 8.92e-03 48_[-2(6.04e-06)]_33 chrIX:3-266 7.46e-01 100 chrIX:67980-69690 6.80e-01 100 chrIX:98252-100130 8.13e-01 100 chrIX:127091-128227 9.35e-01 100 chrIX:131774-132153 4.93e-01 100 chrIX:137361-138923 2.32e-01 100 chrIX:174756-175337 5.48e-11 41_[+2(7.46e-10)]_16_[+1(6.52e-09)]_\ 3 chrIX:183004-183946 1.68e-14 24_[-1(9.06e-11)]_17_[-2(4.05e-11)]_\ 19 chrIX:196905-197988 9.36e-01 100 chrIX:210470-211365 2.63e-01 100 chrIX:248557-249448 6.69e-01 100 chrIX:254182-254634 3.55e-01 100 chrIX:255474-258418 3.14e-01 100 chrIX:299966-301162 5.48e-01 100 chrIX:315982-317440 7.60e-01 100 chrIX:323977-324704 8.38e-06 22_[-1(4.85e-07)]_15_[-2(1.92e-05)]_\ 23 chrIX:325459-326449 9.79e-01 100 chrIX:336104-336813 5.20e-01 100 chrIX:370102-370738 1.18e-01 100 chrIX:386491-387036 1.77e-01 100 chrIX:438403-439882 8.10e-01 100 chrV:6099-6681 8.18e-01 100 chrV:53420-54203 5.20e-01 100 chrV:60970-62262 6.00e-01 100 chrV:68764-69519 2.57e-01 100 chrV:85033-86928 6.22e-01 100 chrV:99058-99325 7.40e-01 100 chrV:99527-100429 8.12e-01 100 chrV:110152-110863 6.20e-01 100 chrV:117437-118413 6.39e-01 100 chrV:130604-131482 8.45e-02 100 chrV:134916-135960 2.14e-07 46_[-1(3.06e-11)]_33 chrV:138281-142080 6.18e-01 100 chrV:176765-177456 1.52e-06 79_[+1(6.79e-10)] chrV:206889-207787 6.99e-02 100 chrV:225428-225695 5.11e-01 100 chrV:250079-251452 8.20e-01 100 chrV:268816-270796 2.05e-01 100 chrV:287429-288853 4.26e-01 100 chrV:305205-306882 8.78e-01 100 chrV:311756-312383 4.69e-13 13_[-1(9.06e-11)]_16_[-2(3.20e-10)]_\ 31 chrV:321576-323021 2.79e-01 100 chrV:354650-355442 6.93e-01 100 chrV:361847-363298 1.49e-01 100 chrV:363652-364652 5.85e-01 100 chrV:396102-397958 8.21e-01 100 chrV:423023-425270 3.01e-01 100 chrV:430935-431979 6.63e-01 100 chrV:433306-436293 4.47e-01 100 chrV:438113-439052 8.57e-01 100 chrV:441566-442635 5.12e-01 100 chrV:442917-443576 5.75e-14 15_[-1(9.06e-11)]_17_[-2(4.05e-11)]_\ 28 chrV:469197-469761 2.09e-10 34_[+2(1.43e-08)]_17_[+1(1.01e-08)]_\ 9 chrV:486908-487768 1.24e-05 52_[-1(6.79e-10)]_27 chrV:492045-492624 4.39e-05 77_[-1(1.16e-07)]_2 chrV:504855-505328 3.21e-01 100 chrV:522619-523099 6.44e-01 100 chrV:551055-551780 5.52e-01 100 chrVI:4441-5489 2.94e-01 100 chrVI:64032-65469 9.25e-01 100 chrVI:95364-95952 1.28e-01 100 chrVI:101089-101891 1.01e-06 7_[+1(7.81e-10)]_72 chrVI:137116-137971 1.44e-10 2_[-1(2.54e-08)]_17_[-2(7.46e-10)]_\ 41 chrVI:157621-158749 9.48e-01 100 chrVI:161811-162522 5.30e-01 100 chrVI:167227-167745 4.27e-08 7_[+2(5.85e-07)]_32_[+1(1.25e-08)]_\ 21 chrVI:180563-181285 3.68e-01 100 chrVI:190830-191878 1.23e-01 100 chrVI:204768-205309 3.57e-01 100 chrVI:210407-210933 4.39e-08 8_[-1(1.25e-08)]_32_[-2(5.85e-07)]_\ 20 chrVI:220845-222113 5.77e-01 100 chrVI:223024-224164 6.51e-02 100 chrVI:226466-227003 7.35e-12 13_[-1(3.06e-11)]_16_[-2(2.13e-08)]_\ 31 chrVI:269314-270157 4.24e-01 100 chrVII:51-1543 7.51e-01 100 chrVII:9942-10693 2.24e-01 100 chrVII:73650-74449 8.34e-01 100 chrVII:110372-111038 2.45e-01 100 chrVII:114938-116112 8.00e-12 19_[+2(3.77e-09)]_39_[+1(1.50e-10)]_\ 2 chrVII:121927-122654 8.56e-12 35_[+2(2.13e-08)]_16_[+1(3.06e-11)]_\ 9 chrVII:147470-149613 7.69e-01 100 chrVII:185282-186118 1.07e-07 73_[-1(3.06e-11)]_6 chrVII:204864-206333 7.64e-03 55_[+1(1.91e-06)]_24 chrVII:228501-228848 6.24e-01 100 chrVII:253989-254733 4.34e-03 9_[-1(5.53e-05)]_70 chrVII:255150-255677 7.41e-02 100 chrVII:276865-277867 5.88e-01 100 chrVII:286368-287849 7.84e-01 100 chrVII:291648-292012 9.32e-01 100 chrVII:310381-312278 8.73e-01 100 chrVII:319551-320775 4.44e-01 100 chrVII:328233-329177 2.05e-01 100 chrVII:364882-367028 8.67e-01 100 chrVII:371163-371852 5.35e-01 100 chrVII:397924-398372 1.92e-01 100 chrVII:400778-401937 3.78e-01 100 chrVII:405251-405831 1.11e-06 19_[+1(7.81e-10)]_60 chrVII:412046-412649 9.54e-10 6_[-1(1.01e-08)]_17_[-2(1.43e-08)]_\ 37 chrVII:422773-423584 7.24e-03 46_[+1(1.91e-06)]_33 chrVII:437735-440045 9.03e-01 100 chrVII:440274-441405 9.60e-01 100 chrVII:442765-443909 8.20e-01 100 chrVII:479121-480608 5.90e-01 100 chrVII:480988-484140 3.22e-01 100 chrVII:531394-532228 9.99e-01 100 chrVII:533653-535904 7.88e-01 100 chrVII:541538-542227 6.29e-07 58_[+1(6.79e-10)]_21 chrVII:544313-546145 9.15e-01 100 chrVII:554591-554891 5.71e-01 100 chrVII:555115-556076 7.94e-01 100 chrVII:556315-558291 7.52e-01 100 chrVII:561361-562000 2.04e-04 41_[-1(1.07e-07)]_38 chrVII:608987-610545 1.00e+00 100 chrVII:610772-610999 8.44e-01 100 chrVII:648759-649595 3.81e-01 100 chrVII:661328-662379 1.81e-01 100 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******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************