Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.041555
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.078414
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.110145
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.037675
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.0877
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background
Finished invoke:
  name: bg  status: 0  time: 0.017671
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 978.269128
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 78.460354
Invoking:
  centrimo -seqlen 495 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.184304
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.341767
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background -primary GGRRTCGAACCSVKGAYCTYMNGRTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.756741
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background -primary SSCTYWAMCMACTRRRCYA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.687524
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background -primary TTTCTTTTTTTTTTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.597129
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background -primary ASACCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.512304
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background -primary CGGGGAD /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.322105
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background -primary CCTRCAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.29491
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background -primary ATAGTKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.326353
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background -primary GCCATRGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.268769
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background -primary CACGRTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.314901
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background -primary CTCTCMCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.262468
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background -primary AGCAGATK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.260337
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background -primary CGCCASAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.324486
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background -primary ATCCGKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.274938
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background -primary CGSCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.494146
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background --motif GGRRTCGAACCSVKGAYCTYMNGRTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.351058
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background --motif SSCTYWAMCMACTRRRCYA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.350104
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background --motif TTTCTTTTTTTTTTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.408935
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background --motif ASACCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.252838
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background --motif CGGGGAD /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.261682
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background --motif CCTRCAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.260679
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background --motif ATAGTKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.268541
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background --motif GCCATRGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.275635
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background --motif CACGRTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.265201
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background --motif CTCTCMCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.27693
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background --motif AGCAGATK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.272478
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background --motif CGCCASAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.266744
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background --motif ATCCGKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.240944
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/background --motif CGSCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/BY4741--SOK2.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.273685
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SOK2/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.248609
Done