******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SFL1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:332160-334579 1.0000 100 chrVIII:85049-85573 1.0000 100 chrXIV:628108-629344 1.0000 100 chrVI:147889-148921 1.0000 100 chrXI:100216-107402 1.0000 100 chrI:150857-151997 1.0000 100 chrIV:1245669-1246243 1.0000 100 chrXVI:810444-811064 1.0000 100 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chrXIII:57305-57735 1.0000 100 chrXV:759032-759751 1.0000 100 chrVII:661537-662431 1.0000 100 chrVI:19340-19886 1.0000 100 chrXVI:699993-700730 1.0000 100 chrVII:794149-794760 1.0000 100 chrII:256103-257170 1.0000 100 chrXIV:281980-283889 1.0000 100 chrXV:619250-624835 1.0000 100 chrX:390900-391000 1.0000 100 chrXI:513207-514325 1.0000 100 chrVII:1049936-1050784 1.0000 100 chrXII:648863-651241 1.0000 100 chrIV:1467287-1468513 1.0000 100 chrI:138653-139398 1.0000 100 chrXII:646052-646367 1.0000 100 chrVIII:34369-36213 1.0000 100 chrXIII:352099-352550 1.0000 100 chrXIV:26883-27614 1.0000 100 chrII:544421-544933 1.0000 100 chrIII:28563-31611 1.0000 100 chrIX:388107-389134 1.0000 100 chrXII:11101-11394 1.0000 100 chrXI:282785-285141 1.0000 100 chrXIV:215772-217036 1.0000 100 chrXVI:338687-339267 1.0000 100 chrVI:95527-95832 1.0000 100 chrXIV:567896-568935 1.0000 100 chrXII:516200-516798 1.0000 100 chrXV:832258-832853 1.0000 100 chrIV:884157-884694 1.0000 100 chrXII:97159-97931 1.0000 100 chrXV:966941-967786 1.0000 100 chrXV:723310-725699 1.0000 100 chrXIII:287459-287775 1.0000 100 chrVII:438955-442071 1.0000 100 chrVII:1003983-1004415 1.0000 100 chrXIV:96044-96658 1.0000 100 chrXII:366022-366842 1.0000 100 chrXVI:406600-407932 1.0000 100 chrIV:218283-218831 1.0000 100 chrIV:946159-946630 1.0000 100 chrXIII:320974-321314 1.0000 100 chrIV:601832-602700 1.0000 100 chrXIII:378636-379641 1.0000 100 chrV:117643-118283 1.0000 100 chrXVI:622018-622887 1.0000 100 chrIV:355066-357050 1.0000 100 chrII:504500-504864 1.0000 100 chrXII:498295-499909 1.0000 100 chrV:491005-491525 1.0000 100 chrXIII:625864-626898 1.0000 100 chrIV:1305378-1306400 1.0000 100 chrXV:32012-33756 1.0000 100 chrXIV:722950-723210 1.0000 100 chrIII:14442-16957 1.0000 100 chrXII:448182-449008 1.0000 100 chrVII:554961-558196 1.0000 100 chrXV:216318-216524 1.0000 100 chrIV:1243055-1243327 1.0000 100 chrXIII:752459-754239 1.0000 100 chrIV:1150249-1151916 1.0000 100 chrV:138179-140788 1.0000 100 chrXIV:392261-392742 1.0000 100 chrIV:1201393-1202787 1.0000 100 chrXI:83522-84418 1.0000 100 chrXI:219559-220115 1.0000 100 chrXI:7766-8221 1.0000 100 chrII:591381-591823 1.0000 100 chrXI:589800-590478 1.0000 100 chrXIII:572680-573296 1.0000 100 chrIX:316702-318334 1.0000 100 chrX:413723-413823 1.0000 100 chrVII:73651-74265 1.0000 100 chrIV:322153-323649 1.0000 100 chrIV:416528-417137 1.0000 100 chrXIV:546953-547412 1.0000 100 chrIV:229702-230759 1.0000 100 chrVII:700085-701571 1.0000 100 chrXIII:761030-763176 1.0000 100 chrXIII:650140-653005 1.0000 100 chrX:440405-440505 1.0000 100 chrX:703356-703456 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SFL1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SFL1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SFL1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.310 C 0.190 G 0.190 T 0.310 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--SFL1/background): A 0.317 C 0.183 G 0.183 T 0.317 ******************************************************************************** ******************************************************************************** MOTIF MBSGGRRTCGAACCSVKGAYCTYHHGRTTR MEME-1 width = 30 sites = 56 llr = 1171 E-value = 1.1e-228 ******************************************************************************** -------------------------------------------------------------------------------- Motif MBSGGRRTCGAACCSVKGAYCTYHHGRTTR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4::3:65:::aa::13127:1:122:5116 pos.-specific C 4451::1:8:::a7431::5624543211: probability G 1347a42::a:::154481:2::1273113 matrix T 131:::2a3::::2::4:2518423::771 bits 2.4 * * * 2.2 * * * 2.0 * * * 1.7 * * ** * Relative 1.5 * ****** * * Entropy 1.2 * ******* * * (30.2 bits) 1.0 **** ******** * * * * 0.7 ***** ********* ***** * 0.5 ****** **************** ***** 0.2 ****************************** 0.0 ------------------------------ Multilevel CCCGGAATCGAACCGGGGACCTCCCGATTA consensus AGGA GG T CAT TT CTATCG G sequence T C T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRRTCGAACCSVKGAYCTYHHGRTTR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrII:197169-197863 - 64 2.13e-13 GGTCTCT AGCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrV:443010-443507 + 2 2.13e-13 T AGCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrXVI:880036-880613 + 30 2.13e-13 AATGGTCTCT AGCGGGATCGAACCGCTGATCCCCGCGTTA TTAGCACGGT chrVII:794149-794760 - 48 5.69e-13 TATGGACGCA ACCGGAATCGAACCGATGACCTCTTCCTTG CAAGGGAAGC chrXII:214611-215150 + 61 5.69e-13 AATGGACGCA ACCGGAATCGAACCGATGACCTCTTCCTTG CAAGGGAAGC chrIV:802463-802997 + 59 1.05e-12 AGAGGTCCTA CCCGGATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrIII:168083-168633 + 1 1.05e-12 . CCCGGATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrV:250130-250570 - 20 1.05e-12 AAAGGTCCTA CCCGGATTCGAACCGGGGTTGTCCGGATCA AAACCGAAAG chrV:130827-131426 + 14 2.19e-12 ATAGGTCTTA CCCGGATTCGAACCGGGGTTGTTCGGATCA AAACCGAAAG chrVII:930699-931218 + 53 3.34e-12 AATGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrXIII:183699-184200 + 7 3.34e-12 CGCAAG CCCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrIII:142066-143405 + 24 3.34e-12 GATGCGCAAG CCCGGAATCGAACCGGGGGCCCAACGATGG CAACGTTGGA chrX:355148-355248 - 18 5.03e-12 AGCACTCACG ATGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrXI:162207-162753 + 65 5.03e-12 AACACTCACG ATGGGGGTCGAACCCATAATCTTCTGATTA GAAGTC chrIV:1352327-1352719 + 1 5.03e-12 . AGGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrVI:226433-226931 + 64 5.03e-12 TAAGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCA chrX:374167-374267 + 39 5.03e-12 AGCACTCACG ATGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrIV:568543-569291 - 49 5.03e-12 AGCACTCACG ATGGGGGTCGAACCCATAATCTTCTGATTA GAAGTCAGAC chrVII:185345-186150 + 25 5.03e-12 ATAGCCCTGT AGGGGGCTCGAACCCCTAACCTTATGATTA AGAGTCATAC chrIX:197376-197953 - 12 5.75e-12 AACTCCGAAG CGGGGAGTCGAACCCCGGTCTCCACGGTGA GAACGTGATG chrVII:541595-542179 - 47 5.75e-12 CACTCCGATA CGGGGAGTCGAACCCCGGTCTCCACGGTGA AAGCGTGATG chrXIII:372159-372722 + 63 6.56e-12 AATGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAG chrXV:663483-664254 + 2 6.56e-12 G CCCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXII:687650-688131 + 27 6.56e-12 AATGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrV:469254-469753 - 40 6.56e-12 AATGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXI:307898-308414 + 46 6.56e-12 ATTGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrVIII:85049-85573 + 45 6.56e-12 ATTGATTTCG CCCAGGATCGAACTGGGGACGTTCTGCGTG TTAAGCAGAT chrXV:353820-354350 + 14 3.66e-11 AATGCTTCCA ATCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrIX:325503-326081 - 41 3.66e-11 ATTGCTTCCA ATCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrIV:434020-434574 + 25 3.66e-11 TATGCTTCCA ATCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrX:58691-58791 + 40 3.66e-11 TATGCTTCCA ATCGGATTTGAACCGATGATCTCCACATTA CTAGTGTGGC chrXIV:546953-547412 - 27 7.97e-11 ACGGGGCGAG CTGGGAATTGAACCCAGGGCCTCTCGCATG CTTTGTCTTC chrXIII:320974-321314 + 61 1.83e-10 AATGGACGAG TCCGGAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrXVI:856769-857084 - 61 1.83e-10 AATGGACGAG TCCGGAATCGAACCGGAGACCTCTCCCATG CTAAGGGAGC chrXII:656675-657177 + 66 1.83e-10 CTTGGACGAG TCCGGAATCGAACCGGAGACCTCTCCCATG CTAAG chrIV:359404-359873 - 47 3.62e-10 AACTCCTCAT AGGGGGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrXII:875263-875676 - 15 3.62e-10 AACTCCTCAT AGGGGGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrVII:115272-115779 - 71 3.62e-10 . AGGGGGCTCGAACCCCTGACATTTCGGTAT CCTTGCTTAA chrVII:779416-779923 - 31 5.75e-10 CTTGAGCGGT ACGAGAATCGAACCCGTGTCCCCACCTTGG AAGGGTGGGA chrXI:74340-75009 - 36 9.77e-10 AGCGACCCCA GTGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrXIV:102507-103095 - 1 9.77e-10 AACGACCCCA GTGAGGGTTGAACTCACGATCTTGCGATTA chrXIV:632429-632894 - 24 9.77e-10 AACGACCCCA GTGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCGCAC chrXVI:810444-811064 - 8 9.77e-10 TACGACCCCA GTGAGGGTTGAACTCACGATCTTGCGATTA ACAGTCG chrIV:946159-946630 - 19 2.06e-09 AATCTCCCGG GGGCGAGTCGAACGCCCGATCTCAAGATTT CGTAGTGATA chrX:354032-354132 - 26 2.06e-09 AATCTCCCGG GGGCGAGTCGAACGCCCGATCTCAAGATTT CGTAGTGGTA chrXIII:168611-169065 - 58 2.06e-09 TATCTCCCGG GGGCGAGTCGAACGCCCGATCTCAAGATTT CGTAGTGGTA chrVIII:466746-467275 - 64 2.23e-09 GCCACCT GCCAGAATTGAACTAGCGACCTTTGCATTA CAAGTGCAAC chrXIII:352099-352550 - 59 3.05e-09 AATGCGAATT CTGTGGATCGAACACAGGACCTCCAGATAA CTTGACCGAA chrIV:619581-620370 + 52 6.36e-09 ATCTTCCCCG CCAGGACTTGAACCTGGAATCTTCTGGTTC GTAGCCAGAC chrXI:490680-491387 - 20 6.36e-09 TTCTTCCCCG CCAGGACTTGAACCTGGAATCTTCTGGTTC GTAGCCAGAC chrXV:709979-710495 - 48 7.84e-09 ATTAGCGCCG CTCGGTTTCGATCCGAGGACATCAGGGTTA TGAGCCCTGC chrVII:110400-110893 + 37 2.96e-08 ATTGCCATCT CCTAGAATCGAACCAGGGTTTCATCGGCCA CAACGATGTG chrV:434376-434771 + 26 2.96e-08 AATGCCATCT CCTAGAATCGAACCAGGGTTTCATCGGCCA CAACGATGTG chrXI:313106-313677 + 68 2.96e-08 AATGCCATCT CCTAGAATCGAACCAGGGTTTCATCGGCCA CAA chrIX:336132-336656 + 13 3.52e-08 ATCTCCGCGA CGGGGAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA chrII:405248-406777 - 32 3.52e-08 ATCTCCGCGA CGGGGAATTGAACCCCGATCTGGCACGCGA CAAGCGCCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRRTCGAACCSVKGAYCTYHHGRTTR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:197169-197863 2.1e-13 63_[-1]_7 chrV:443010-443507 2.1e-13 1_[+1]_69 chrXVI:880036-880613 2.1e-13 29_[+1]_41 chrVII:794149-794760 5.7e-13 47_[-1]_23 chrXII:214611-215150 5.7e-13 60_[+1]_10 chrIV:802463-802997 1.1e-12 58_[+1]_12 chrIII:168083-168633 1.1e-12 [+1]_70 chrV:250130-250570 1.1e-12 19_[-1]_51 chrV:130827-131426 2.2e-12 13_[+1]_57 chrVII:930699-931218 3.3e-12 52_[+1]_18 chrXIII:183699-184200 3.3e-12 6_[+1]_64 chrIII:142066-143405 3.3e-12 23_[+1]_47 chrX:355148-355248 5e-12 17_[-1]_53 chrXI:162207-162753 5e-12 64_[+1]_6 chrIV:1352327-1352719 5e-12 [+1]_70 chrVI:226433-226931 5e-12 63_[+1]_7 chrX:374167-374267 5e-12 38_[+1]_32 chrIV:568543-569291 5e-12 48_[-1]_22 chrVII:185345-186150 5e-12 24_[+1]_46 chrIX:197376-197953 5.7e-12 11_[-1]_59 chrVII:541595-542179 5.7e-12 46_[-1]_24 chrXIII:372159-372722 6.6e-12 62_[+1]_8 chrXV:663483-664254 6.6e-12 1_[+1]_69 chrXII:687650-688131 6.6e-12 26_[+1]_44 chrV:469254-469753 6.6e-12 39_[-1]_31 chrXI:307898-308414 6.6e-12 45_[+1]_25 chrVIII:85049-85573 6.6e-12 44_[+1]_26 chrXV:353820-354350 3.7e-11 13_[+1]_57 chrIX:325503-326081 3.7e-11 40_[-1]_30 chrIV:434020-434574 3.7e-11 24_[+1]_46 chrX:58691-58791 3.7e-11 39_[+1]_31 chrXIV:546953-547412 8e-11 26_[-1]_44 chrXIII:320974-321314 1.8e-10 60_[+1]_10 chrXVI:856769-857084 1.8e-10 60_[-1]_10 chrXII:656675-657177 1.8e-10 65_[+1]_5 chrIV:359404-359873 3.6e-10 46_[-1]_24 chrXII:875263-875676 3.6e-10 14_[-1]_56 chrVII:115272-115779 3.6e-10 70_[-1] chrVII:779416-779923 5.8e-10 30_[-1]_40 chrXI:74340-75009 9.8e-10 35_[-1]_35 chrXIV:102507-103095 9.8e-10 [-1]_70 chrXIV:632429-632894 9.8e-10 23_[-1]_47 chrXVI:810444-811064 9.8e-10 7_[-1]_63 chrIV:946159-946630 2.1e-09 18_[-1]_52 chrX:354032-354132 2.1e-09 25_[-1]_45 chrXIII:168611-169065 2.1e-09 57_[-1]_13 chrVIII:466746-467275 2.2e-09 63_[-1]_7 chrXIII:352099-352550 3e-09 58_[-1]_12 chrIV:619581-620370 6.4e-09 51_[+1]_19 chrXI:490680-491387 6.4e-09 19_[-1]_51 chrXV:709979-710495 7.8e-09 47_[-1]_23 chrVII:110400-110893 3e-08 36_[+1]_34 chrV:434376-434771 3e-08 25_[+1]_45 chrXI:313106-313677 3e-08 67_[+1]_3 chrIX:336132-336656 3.5e-08 12_[+1]_58 chrII:405248-406777 3.5e-08 31_[-1]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRRTCGAACCSVKGAYCTYHHGRTTR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MBSGGRRTCGAACCSVKGAYCTYHHGRTTR width=30 seqs=56 chrII:197169-197863 ( 64) AGCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrV:443010-443507 ( 2) AGCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrXVI:880036-880613 ( 30) AGCGGGATCGAACCGCTGATCCCCGCGTTA 1 chrVII:794149-794760 ( 48) ACCGGAATCGAACCGATGACCTCTTCCTTG 1 chrXII:214611-215150 ( 61) ACCGGAATCGAACCGATGACCTCTTCCTTG 1 chrIV:802463-802997 ( 59) CCCGGATTCGAACCGGGGTTGTCCGGATCA 1 chrIII:168083-168633 ( 1) CCCGGATTCGAACCGGGGTTGTCCGGATCA 1 chrV:250130-250570 ( 20) CCCGGATTCGAACCGGGGTTGTCCGGATCA 1 chrV:130827-131426 ( 14) CCCGGATTCGAACCGGGGTTGTTCGGATCA 1 chrVII:930699-931218 ( 53) CCCGGAATCGAACCGGGGGCCCAACGATGG 1 chrXIII:183699-184200 ( 7) CCCGGAATCGAACCGGGGGCCCAACGATGG 1 chrIII:142066-143405 ( 24) CCCGGAATCGAACCGGGGGCCCAACGATGG 1 chrX:355148-355248 ( 18) ATGGGGGTCGAACCCATAATCTTCTGATTA 1 chrXI:162207-162753 ( 65) ATGGGGGTCGAACCCATAATCTTCTGATTA 1 chrIV:1352327-1352719 ( 1) AGGGGGCTCGAACCCCTAACCTTATGATTA 1 chrVI:226433-226931 ( 64) AGGGGGCTCGAACCCCTAACCTTATGATTA 1 chrX:374167-374267 ( 39) ATGGGGGTCGAACCCATAATCTTCTGATTA 1 chrIV:568543-569291 ( 49) ATGGGGGTCGAACCCATAATCTTCTGATTA 1 chrVII:185345-186150 ( 25) AGGGGGCTCGAACCCCTAACCTTATGATTA 1 chrIX:197376-197953 ( 12) CGGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrVII:541595-542179 ( 47) CGGGGAGTCGAACCCCGGTCTCCACGGTGA 1 chrXIII:372159-372722 ( 63) CCCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXV:663483-664254 ( 2) CCCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXII:687650-688131 ( 27) CCCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrV:469254-469753 ( 40) CCCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXI:307898-308414 ( 46) CCCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrVIII:85049-85573 ( 45) CCCAGGATCGAACTGGGGACGTTCTGCGTG 1 chrXV:353820-354350 ( 14) ATCGGATTTGAACCGATGATCTCCACATTA 1 chrIX:325503-326081 ( 41) ATCGGATTTGAACCGATGATCTCCACATTA 1 chrIV:434020-434574 ( 25) ATCGGATTTGAACCGATGATCTCCACATTA 1 chrX:58691-58791 ( 40) ATCGGATTTGAACCGATGATCTCCACATTA 1 chrXIV:546953-547412 ( 27) CTGGGAATTGAACCCAGGGCCTCTCGCATG 1 chrXIII:320974-321314 ( 61) TCCGGAATCGAACCGGAGACCTCTCCCATG 1 chrXVI:856769-857084 ( 61) TCCGGAATCGAACCGGAGACCTCTCCCATG 1 chrXII:656675-657177 ( 66) TCCGGAATCGAACCGGAGACCTCTCCCATG 1 chrIV:359404-359873 ( 47) AGGGGGCTCGAACCCCTGACATTTCGGTAT 1 chrXII:875263-875676 ( 15) AGGGGGCTCGAACCCCTGACATTTCGGTAT 1 chrVII:115272-115779 ( 71) AGGGGGCTCGAACCCCTGACATTTCGGTAT 1 chrVII:779416-779923 ( 31) ACGAGAATCGAACCCGTGTCCCCACCTTGG 1 chrXI:74340-75009 ( 36) GTGAGGGTTGAACTCACGATCTTGCGATTA 1 chrXIV:102507-103095 ( 1) GTGAGGGTTGAACTCACGATCTTGCGATTA 1 chrXIV:632429-632894 ( 24) GTGAGGGTTGAACTCACGATCTTGCGATTA 1 chrXVI:810444-811064 ( 8) GTGAGGGTTGAACTCACGATCTTGCGATTA 1 chrIV:946159-946630 ( 19) GGGCGAGTCGAACGCCCGATCTCAAGATTT 1 chrX:354032-354132 ( 26) GGGCGAGTCGAACGCCCGATCTCAAGATTT 1 chrXIII:168611-169065 ( 58) GGGCGAGTCGAACGCCCGATCTCAAGATTT 1 chrVIII:466746-467275 ( 64) GCCAGAATTGAACTAGCGACCTTTGCATTA 1 chrXIII:352099-352550 ( 59) CTGTGGATCGAACACAGGACCTCCAGATAA 1 chrIV:619581-620370 ( 52) CCAGGACTTGAACCTGGAATCTTCTGGTTC 1 chrXI:490680-491387 ( 20) CCAGGACTTGAACCTGGAATCTTCTGGTTC 1 chrXV:709979-710495 ( 48) CTCGGTTTCGATCCGAGGACATCAGGGTTA 1 chrVII:110400-110893 ( 37) CCTAGAATCGAACCAGGGTTTCATCGGCCA 1 chrV:434376-434771 ( 26) CCTAGAATCGAACCAGGGTTTCATCGGCCA 1 chrXI:313106-313677 ( 68) CCTAGAATCGAACCAGGGTTTCATCGGCCA 1 chrIX:336132-336656 ( 13) CGGGGAATTGAACCCCGATCTGGCACGCGA 1 chrII:405248-406777 ( 32) CGGGGAATTGAACCCCGATCTGGCACGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRRTCGAACCSVKGAYCTYHHGRTTR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 10.7928 E= 1.1e-228 17 128 -36 -256 -1245 128 64 -24 -315 140 123 -256 -24 -177 185 -414 -1245 -1245 245 -1245 81 -1245 123 -414 55 -36 34 -98 -1245 -1245 -1245 166 -1245 203 -1245 -34 -1245 -1245 245 -1245 166 -1245 -1245 -1245 163 -1245 -1245 -414 -1245 245 -1245 -1245 -414 200 -177 -69 -215 123 134 -315 -6 64 116 -1245 -256 -36 128 17 -69 -1245 213 -1245 117 -1245 -136 -56 -1245 150 -1245 61 -215 177 -4 -134 -1245 23 -236 124 -156 123 -236 44 -45 134 -136 -45 -83 96 -19 -6 -1245 64 196 -1245 61 23 64 -414 -215 -104 -77 121 -215 -55 -36 106 85 -236 64 -156 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRRTCGAACCSVKGAYCTYHHGRTTR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 56 E= 1.1e-228 0.357143 0.446429 0.142857 0.053571 0.000000 0.446429 0.285714 0.267857 0.035714 0.482143 0.428571 0.053571 0.267857 0.053571 0.660714 0.017857 0.000000 0.000000 1.000000 0.000000 0.553571 0.000000 0.428571 0.017857 0.464286 0.142857 0.232143 0.160714 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.982143 0.000000 0.000000 0.017857 0.000000 1.000000 0.000000 0.000000 0.017857 0.732143 0.053571 0.196429 0.071429 0.428571 0.464286 0.035714 0.303571 0.285714 0.410714 0.000000 0.053571 0.142857 0.446429 0.357143 0.196429 0.000000 0.803571 0.000000 0.714286 0.000000 0.071429 0.214286 0.000000 0.517857 0.000000 0.482143 0.071429 0.625000 0.178571 0.125000 0.000000 0.214286 0.035714 0.750000 0.107143 0.428571 0.035714 0.428571 0.232143 0.464286 0.071429 0.232143 0.178571 0.357143 0.160714 0.303571 0.000000 0.285714 0.714286 0.000000 0.482143 0.214286 0.285714 0.017857 0.071429 0.089286 0.107143 0.732143 0.071429 0.125000 0.142857 0.660714 0.571429 0.035714 0.285714 0.107143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MBSGGRRTCGAACCSVKGAYCTYHHGRTTR MEME-1 regular expression -------------------------------------------------------------------------------- [CA][CGT][CG][GA]G[AG][AG]T[CT]GAACC[GC][GAC][GT]G[AT][CT]C[TC][CT][CAT][CT][GC][AGC]TT[AG] -------------------------------------------------------------------------------- Time 353.21 secs. ******************************************************************************** ******************************************************************************** MOTIF GRDSSCBYWAMCVACTRSGCCAHRNRVSCW MEME-2 width = 30 sites = 42 llr = 814 E-value = 3.1e-127 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRDSSCBYWAMCVACTRSGCCAHRNRVSCW MEME-2 Description -------------------------------------------------------------------------------- Simplified A 14321111474:3a::523::a45345::4 pos.-specific C 2:144733::5a5:9:23:a8:413:36a: probability G 5434512:::::2:::357::::42424:1 matrix T 223::14562::::1a1:::2:2121:::5 bits 2.4 * * 2.2 * * * 2.0 * * * * 1.7 * ** * * * Relative 1.5 * *** *** * Entropy 1.2 * * *** **** ** (28.0 bits) 1.0 ** ** *** **** ** 0.7 *** ** *** ***** ** 0.5 * *** ********* ******* *** 0.2 ** ********************* ***** 0.0 ------------------------------ Multilevel GATCGCTTTACCCACTAGGCCACAAAACCT consensus TGAGC CCATA A GCA T AGCGCG A sequence G G G A T G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRDSSCBYWAMCVACTRSGCCAHRNRVSCW MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrX:197162-197262 + 18 5.89e-15 CATGCTAAGG GAGCGCGCTACCGACTACGCCACACGCCCT AATATTATTG chrXVI:856769-857084 - 25 4.36e-14 CATGCTAAGG GAGCGCGCTACCGACTACGCCACACGCCCG AATCTTGTTG chrVI:204842-205193 + 1 4.36e-14 . GAGCGCGCTACCGACTACGCCACACGCCCG AACGTTTGTT chrII:197169-197863 - 27 1.29e-13 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACCT TGATTACTGG chrV:443010-443507 + 39 1.95e-13 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACCA AATTTTAATG chrXVI:880036-880613 + 67 1.95e-13 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACCA TTAT chrXII:687650-688131 + 64 7.15e-12 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACCT ATTATTT chrXV:663483-664254 + 39 9.57e-12 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACCA CTATTTGTTG chrVII:823262-823686 - 57 9.57e-12 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACCA CTCTTATTGG chrVII:412122-412587 + 35 9.57e-12 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACCA GTTTTTTGAT chrV:469254-469753 - 3 9.57e-12 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACCA AT chrXII:592062-593162 + 29 1.27e-11 ACCTAAATCT GACGCCTTAAACCACTCGGCCAAACTCCCA TTGTATGTTG chrXII:731913-732247 - 59 1.27e-11 ACCTAAATCT GACGCCTTAAACCACTCGGCCAAACTCCCA TTGTATGTTG chrIX:325503-326081 - 5 3.28e-11 ATTACTAGTG TGGCGCCTTACCAACTTGGCCATAGAAGCT CGTA chrIV:434020-434574 + 61 3.28e-11 ATTACTAGTG TGGCGCCTTACCAACTTGGCCATAGAAGCT TCTGATTTGT chrXV:353820-354350 + 50 4.25e-11 ATTACTAGTG TGGCGCCTTACCAACTTGGCCATAGAAGCA GTAAACCGTT chrX:523823-523923 + 57 6.18e-11 ATTTCTAATC TTTCGCCTTAACCACTCGGCCAAGTTGCCT TTAATCTCTT chrI:182363-182748 + 70 7.88e-11 ATTTCTAATC TTTCGCCTTAACCACTCGGCCAAGTTGCCA A chrXII:167745-168297 + 26 7.88e-11 ATTTCTAATC TTTCGCCTTAACCACTCGGCCAAGTTGCCA TATGACTATT chrVII:794149-794760 - 12 1.12e-10 CTTGCAAGGG AAGCGCGCTACCAACTGCGCCATGTGCCCG CAATCTATGG chrXII:605134-605695 + 40 1.26e-10 GCTATAAGCA CGAAGCTCTAACCACTGAGCTACACGAGCA TTTTCGAAAG chrXVI:689326-689869 - 17 1.42e-10 ATTTCAAGTC TGTCGCCTTAACCACTCGGCCATAGTGCCC AAAATAATCT chrXII:92255-92874 - 33 1.78e-09 TCGCCCAAAG CGAGAATCATACCACTAGACCACACGCCCT TATTAACTTG chrXIII:195914-196404 + 33 1.78e-09 TCGCCCAAAG CGAGAATCATACCACTAGACCACACGCCCT TGTGAACTTG chrXIII:504567-505226 - 48 1.95e-09 TCTTGAATCA GGCGCCTTAGACCGCTCGGCCAAACAACCA CTTATCTGTT chrXV:300783-301494 - 8 3.55e-09 TCGCCCAAAG CGAGAATCATACCACTAGACCACACGCCCG ATCTTTT chrXV:487184-487716 - 38 6.25e-09 TTAACAGTCG CACGCCTTAACCAACTTGGCCATGGAGTCT AACTTTGTTG chrXIII:352099-352550 - 5 7.29e-09 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAATCCGCT TATA chrVI:157518-158485 + 28 7.29e-09 TTCTTCAGTC TGGCGCTCTCCCAACTGAGCTAAATCCGCT TCTATTTATG chrIII:142066-143405 + 58 7.87e-09 CGATGGCAAC GTTGGATTTTACCACTAAACCACTTGCGCT AGTAATCTTG chrIV:1352327-1352719 + 37 7.87e-09 ATTAAGAGTC ATACGCGCTACCGATTGCGCCAACAAGGCT ATTTCGTTGG chrVII:185345-186150 + 61 7.87e-09 ATTAAGAGTC ATACGCGCTACCGATTGCGCCAACAAGGCT ATTTCGTTGA chrXIII:183699-184200 + 41 1.42e-08 CGATGGCAAC GTTGGATTTTACCACTAAACCACTTGCGCG ATCTTTATTG chrVII:115272-115779 - 12 1.52e-08 CTTAAAAGCC GAACGCTCTACCAACTGAGCTAACAAGGAT GAGTTCTTCG chrX:390900-391000 + 34 1.63e-08 ATTATGAGAC TGACGCTCTTCCTACTGAGCTACTGAAGCA CTATTTCTTG chrIII:168083-168633 + 36 2.14e-08 GATCAAAACC GAAAGTGATAACCACTACACTATAGGACCA GGACTTCTTG chrV:130827-131426 + 49 2.79e-08 GATCAAAACC GAAAGTGATAACCACTACACTATAAAACCT CTTAATTATT chrXIII:747744-748178 + 24 3.59e-08 GATTAGAAGT CAGACGCGTTGCCATTACGCCACGCGAGCT AGTCATATGT chrIV:568543-569291 - 14 3.59e-08 GATTAGAAGT CAGACGCGTTGCCATTACGCCACGCGAGCT ACTATTTGTC chrVIII:466746-467275 - 29 4.32e-08 CATTACAAGT GCAACGCTCTACCACTAAGCTAAGGAGGCT AAAAATACAA chrVII:1003983-1004415 - 66 4.88e-08 CAAGT GCAACGCTCTACCACTAAGCTAAGGAGGCA AACCCTTGAA chrII:350524-351129 - 50 7.75e-08 GATCAAAACC GAAAGTGATAACCACTACACTATAAAACCC TTTTATTGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRDSSCBYWAMCVACTRSGCCAHRNRVSCW MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:197162-197262 5.9e-15 17_[+2]_53 chrXVI:856769-857084 4.4e-14 24_[-2]_46 chrVI:204842-205193 4.4e-14 [+2]_70 chrII:197169-197863 1.3e-13 26_[-2]_44 chrV:443010-443507 1.9e-13 38_[+2]_32 chrXVI:880036-880613 1.9e-13 66_[+2]_4 chrXII:687650-688131 7.1e-12 63_[+2]_7 chrXV:663483-664254 9.6e-12 38_[+2]_32 chrVII:823262-823686 9.6e-12 56_[-2]_14 chrVII:412122-412587 9.6e-12 34_[+2]_36 chrV:469254-469753 9.6e-12 2_[-2]_68 chrXII:592062-593162 1.3e-11 28_[+2]_42 chrXII:731913-732247 1.3e-11 58_[-2]_12 chrIX:325503-326081 3.3e-11 4_[-2]_66 chrIV:434020-434574 3.3e-11 60_[+2]_10 chrXV:353820-354350 4.2e-11 49_[+2]_21 chrX:523823-523923 6.2e-11 56_[+2]_14 chrI:182363-182748 7.9e-11 69_[+2]_1 chrXII:167745-168297 7.9e-11 25_[+2]_45 chrVII:794149-794760 1.1e-10 11_[-2]_59 chrXII:605134-605695 1.3e-10 39_[+2]_31 chrXVI:689326-689869 1.4e-10 16_[-2]_54 chrXII:92255-92874 1.8e-09 32_[-2]_38 chrXIII:195914-196404 1.8e-09 32_[+2]_38 chrXIII:504567-505226 1.9e-09 47_[-2]_23 chrXV:300783-301494 3.6e-09 7_[-2]_63 chrXV:487184-487716 6.2e-09 37_[-2]_33 chrXIII:352099-352550 7.3e-09 4_[-2]_66 chrVI:157518-158485 7.3e-09 27_[+2]_43 chrIII:142066-143405 7.9e-09 57_[+2]_13 chrIV:1352327-1352719 7.9e-09 36_[+2]_34 chrVII:185345-186150 7.9e-09 60_[+2]_10 chrXIII:183699-184200 1.4e-08 40_[+2]_30 chrVII:115272-115779 1.5e-08 11_[-2]_59 chrX:390900-391000 1.6e-08 33_[+2]_37 chrIII:168083-168633 2.1e-08 35_[+2]_35 chrV:130827-131426 2.8e-08 48_[+2]_22 chrXIII:747744-748178 3.6e-08 23_[+2]_47 chrIV:568543-569291 3.6e-08 13_[-2]_57 chrVIII:466746-467275 4.3e-08 28_[-2]_42 chrVII:1003983-1004415 4.9e-08 65_[-2]_5 chrII:350524-351129 7.8e-08 49_[-2]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRDSSCBYWAMCVACTRSGCCAHRNRVSCW MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRDSSCBYWAMCVACTRSGCCAHRNRVSCW width=30 seqs=42 chrX:197162-197262 ( 18) GAGCGCGCTACCGACTACGCCACACGCCCT 1 chrXVI:856769-857084 ( 25) GAGCGCGCTACCGACTACGCCACACGCCCG 1 chrVI:204842-205193 ( 1) GAGCGCGCTACCGACTACGCCACACGCCCG 1 chrII:197169-197863 ( 27) GGTGCCTTAACCAACTGGGCCAAGAGACCT 1 chrV:443010-443507 ( 39) GGTGCCTTAACCAACTGGGCCAAGAGACCA 1 chrXVI:880036-880613 ( 67) GGTGCCTTAACCAACTGGGCCAAGAGACCA 1 chrXII:687650-688131 ( 64) GATGCCATAACCGACTAGACCACGAAACCT 1 chrXV:663483-664254 ( 39) GATGCCATAACCGACTAGACCACGAAACCA 1 chrVII:823262-823686 ( 57) GATGCCATAACCGACTAGACCACGAAACCA 1 chrVII:412122-412587 ( 35) GATGCCATAACCGACTAGACCACGAAACCA 1 chrV:469254-469753 ( 3) GATGCCATAACCGACTAGACCACGAAACCA 1 chrXII:592062-593162 ( 29) GACGCCTTAAACCACTCGGCCAAACTCCCA 1 chrXII:731913-732247 ( 59) GACGCCTTAAACCACTCGGCCAAACTCCCA 1 chrIX:325503-326081 ( 5) TGGCGCCTTACCAACTTGGCCATAGAAGCT 1 chrIV:434020-434574 ( 61) TGGCGCCTTACCAACTTGGCCATAGAAGCT 1 chrXV:353820-354350 ( 50) TGGCGCCTTACCAACTTGGCCATAGAAGCA 1 chrX:523823-523923 ( 57) TTTCGCCTTAACCACTCGGCCAAGTTGCCT 1 chrI:182363-182748 ( 70) TTTCGCCTTAACCACTCGGCCAAGTTGCCA 1 chrXII:167745-168297 ( 26) TTTCGCCTTAACCACTCGGCCAAGTTGCCA 1 chrVII:794149-794760 ( 12) AAGCGCGCTACCAACTGCGCCATGTGCCCG 1 chrXII:605134-605695 ( 40) CGAAGCTCTAACCACTGAGCTACACGAGCA 1 chrXVI:689326-689869 ( 17) TGTCGCCTTAACCACTCGGCCATAGTGCCC 1 chrXII:92255-92874 ( 33) CGAGAATCATACCACTAGACCACACGCCCT 1 chrXIII:195914-196404 ( 33) CGAGAATCATACCACTAGACCACACGCCCT 1 chrXIII:504567-505226 ( 48) GGCGCCTTAGACCGCTCGGCCAAACAACCA 1 chrXV:300783-301494 ( 8) CGAGAATCATACCACTAGACCACACGCCCG 1 chrXV:487184-487716 ( 38) CACGCCTTAACCAACTTGGCCATGGAGTCT 1 chrXIII:352099-352550 ( 5) TGGCGCTCTCCCAACTGAGCTAAATCCGCT 1 chrVI:157518-158485 ( 28) TGGCGCTCTCCCAACTGAGCTAAATCCGCT 1 chrIII:142066-143405 ( 58) GTTGGATTTTACCACTAAACCACTTGCGCT 1 chrIV:1352327-1352719 ( 37) ATACGCGCTACCGATTGCGCCAACAAGGCT 1 chrVII:185345-186150 ( 61) ATACGCGCTACCGATTGCGCCAACAAGGCT 1 chrXIII:183699-184200 ( 41) GTTGGATTTTACCACTAAACCACTTGCGCG 1 chrVII:115272-115779 ( 12) GAACGCTCTACCAACTGAGCTAACAAGGAT 1 chrX:390900-391000 ( 34) TGACGCTCTTCCTACTGAGCTACTGAAGCA 1 chrIII:168083-168633 ( 36) GAAAGTGATAACCACTACACTATAGGACCA 1 chrV:130827-131426 ( 49) GAAAGTGATAACCACTACACTATAAAACCT 1 chrXIII:747744-748178 ( 24) CAGACGCGTTGCCATTACGCCACGCGAGCT 1 chrIV:568543-569291 ( 14) CAGACGCGTTGCCATTACGCCACGCGAGCT 1 chrVIII:466746-467275 ( 29) GCAACGCTCTACCACTAAGCTAAGGAGGCT 1 chrVII:1003983-1004415 ( 66) GCAACGCTCTACCACTAAGCTAAGGAGGCA 1 chrII:350524-351129 ( 50) GAAAGTGATAACCACTACACTATAAAACCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRDSSCBYWAMCVACTRSGCCAHRNRVSCW MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 9.47931 E= 3.1e-127 -215 -14 151 -41 44 -194 96 -93 -3 -94 51 7 -73 114 114 -1204 -215 106 158 -1204 -141 196 -94 -215 -141 51 23 35 -215 86 -194 79 17 -194 -1204 91 112 -194 -294 -41 44 151 -194 -1204 -1204 245 -1204 -1204 -27 138 38 -373 162 -1204 -294 -1204 -1204 230 -1204 -173 -1204 -1204 -1204 166 59 -14 51 -173 -56 51 151 -1204 -3 -1204 191 -1204 -1204 245 -1204 -1204 -1204 206 -1204 -41 166 -1204 -1204 -1204 27 114 -1204 -56 51 -136 114 -215 -3 64 23 -73 44 -194 106 -115 51 76 38 -1204 -1204 170 106 -373 -373 241 -1204 -1204 27 -194 -62 51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRDSSCBYWAMCVACTRSGCCAHRNRVSCW MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 42 E= 3.1e-127 0.071429 0.166667 0.523810 0.238095 0.428571 0.047619 0.357143 0.166667 0.309524 0.095238 0.261905 0.333333 0.190476 0.404762 0.404762 0.000000 0.071429 0.380952 0.547619 0.000000 0.119048 0.714286 0.095238 0.071429 0.119048 0.261905 0.214286 0.404762 0.071429 0.333333 0.047619 0.547619 0.357143 0.047619 0.000000 0.595238 0.690476 0.047619 0.023810 0.238095 0.428571 0.523810 0.047619 0.000000 0.000000 1.000000 0.000000 0.000000 0.261905 0.476190 0.238095 0.023810 0.976190 0.000000 0.023810 0.000000 0.000000 0.904762 0.000000 0.095238 0.000000 0.000000 0.000000 1.000000 0.476190 0.166667 0.261905 0.095238 0.214286 0.261905 0.523810 0.000000 0.309524 0.000000 0.690476 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.761905 0.000000 0.238095 1.000000 0.000000 0.000000 0.000000 0.380952 0.404762 0.000000 0.214286 0.452381 0.071429 0.404762 0.071429 0.309524 0.285714 0.214286 0.190476 0.428571 0.047619 0.380952 0.142857 0.452381 0.309524 0.238095 0.000000 0.000000 0.595238 0.380952 0.023810 0.023810 0.976190 0.000000 0.000000 0.380952 0.047619 0.119048 0.452381 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRDSSCBYWAMCVACTRSGCCAHRNRVSCW MEME-2 regular expression -------------------------------------------------------------------------------- [GT][AG][TAG][CG][GC]C[TCG][TC][TA][AT][CA]C[CAG]ACT[AG][GCA][GA]C[CT]A[CAT][AG][ACG][AG][ACG][CG]C[TA] -------------------------------------------------------------------------------- Time 677.77 secs. ******************************************************************************** ******************************************************************************** MOTIF GAAAARAAAAAAAAR MEME-3 width = 15 sites = 103 llr = 1022 E-value = 2.0e-049 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAAAARAAAAAAAAR MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2889869878786a6 pos.-specific C 1:::1:::::::::1 probability G 712::41221223:3 matrix T :::12:::111:::: bits 2.4 2.2 2.0 1.7 Relative 1.5 * Entropy 1.2 * * * (14.3 bits) 1.0 **** ** * * * 0.7 ******** ****** 0.5 *************** 0.2 *************** 0.0 --------------- Multilevel GAAAAAAAAAAAAAA consensus A G GG GG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAARAAAAAAAAR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrIX:96620-97461 - 75 2.99e-08 GAAGGAAACT GAAAAGAAAAAAAAA GGAAACGAAG chrV:225165-225714 + 11 6.44e-08 GGTGAACGAA GAAAAAAAAAAAGAA AAAAATTTTT chrXVI:699993-700730 + 25 7.43e-08 TAAAGGTTTG GAAAAGAAAAAAGAG ACCGCCTCGT chrVIII:504088-504650 + 1 1.80e-07 . GAAAAAAAAAGAAAA ATTGTATGTA chrIV:359404-359873 - 85 2.30e-07 A GAAAAAAAGAAAGAA CTCCTCATAG chrXI:46220-47006 + 25 2.30e-07 GCAGAATAGA GAAAAGAAAAAGGAA AGGAACATAT chrVII:146120-149474 + 17 2.30e-07 AAATTGGATG GAAAAGAGAAAAAAG GAAGGAAAAA chrVII:930699-931218 + 25 2.72e-07 ACTATTCAGG GAAAAAAGAAAAGAA AAAAATGCGC chrIV:520734-521463 + 78 6.67e-07 TCGATACCCT GAAAAAAGGAAAAAG GCGAAGAA chrXIII:701685-703771 + 12 6.67e-07 CACTGACCCA GAAAAGAAGAGAAAG ATTATTGGTA chrXIII:408459-409086 - 52 6.67e-07 ATCTTTTGAG GAAAAAAAAGAAGAA AATCAAGAAG chrV:303871-307712 - 58 6.67e-07 ATATCACCAA AAAAAAAAAAAAAAG TAAAGAAGGT chrX:172672-172772 - 61 8.45e-07 CCCTGGCCTT GAAAAAAAAAAAAAC GGTAAAAAAG chrXIII:807725-808575 - 68 8.45e-07 ACCAATGCGA GAAAAAAATAAAAAG AGAAAGGTAA chrVIII:126033-126240 - 64 8.45e-07 CTCATAAGGT GAAAAAAAAAAAAAC AGTGTAGGTG chrIV:1344868-1345786 + 42 8.45e-07 GAAAAAACTG GAAAAAAATAAAAAG AAAAAATTGA chrII:478936-479587 + 57 1.01e-06 TACGTTACTC GAAACAAAAAAAAAA AAAATGGAAA chrVII:363897-364444 + 63 1.37e-06 CTGCGCATGT GAAAAAAAAGAGAAG AAAATAAAGC chrXIII:353408-353917 - 67 1.37e-06 AAAAATGTAT CAAAAAAAAAAAAAA TTCAAAAATA chrXI:518855-519462 + 76 1.73e-06 CGGGTCGTGC GGAAAAAGAAAAAAG CAGACAAAAC chrVIII:455451-456201 + 75 1.73e-06 GTTCCCATGT AAAAAAAAAAGAAAA CTTTCTTTTT chrXIV:632429-632894 - 63 1.73e-06 AAGACTATCT GAAATAAGAAAAAAA ACGACCCCAG chrV:166794-167893 + 4 1.73e-06 GTG AAAAAGAAAAGAAAA ATATGGTTGG chrVIII:85049-85573 + 10 1.73e-06 ATTTTTCTA AAGAAAAAAAAAAAA TTCAAAAAAA chrIX:254982-257182 + 80 2.15e-06 ATTTAACACA GAAATAAAAAAGGAA GATTCA chrIV:416528-417137 + 77 2.74e-06 ATTCCACGCC AAGAAGAAAAAAGAG TTTCGGGTT chrXV:251499-253687 - 50 2.91e-06 TAACATTGAT GAGAAAAAAATAGAA TCTTCAGTAG chrII:477152-477794 - 83 2.91e-06 ATG GAAAAAAAAAAATAG GAAAAGCCAG chrIV:1161412-1161913 - 79 3.03e-06 AACGCTG GAAAAAAAGGAGAAA TTATTGGAAC chrXII:809015-810053 - 40 3.38e-06 CAGAAGAAGC CAAAAAAAAAAGAAA TTCTTCCTGT chrXII:793720-797403 + 11 3.99e-06 ATGATTAAAC AAAAAAAAGAAGAAG ACAAACAACT chrXII:704222-704590 - 85 3.99e-06 A AAAATGAAAAAAAAA GTGTAACTTT chrXIV:738463-740062 - 19 3.99e-06 CTTGAGGGAA GGAAAAAGGAAAAAG GCTACTCAGG chrXVI:880036-880613 + 1 3.99e-06 . GAAAAAGAAAGAGAA AAGAAATGGT chrVII:1049936-1050784 + 10 4.72e-06 AGGCTAAAC GAAAAGGGAAAAGAG GTGCGTTGCG chrIX:197376-197953 - 53 4.72e-06 TCCCTAAAAA AAAAAGAATAAAAAA TAACTCCGAA chrVII:986764-987990 - 31 4.72e-06 CGTTCACCCA AAAAAAAATAAAAAA CGAAAGGGGC chrXVI:571972-572886 - 32 4.72e-06 ATGTTAAAGG GAAAAGAAAGGGGAA ATGGGAAGAA chrIX:394554-395325 + 53 5.54e-06 AAACTGAAAG GCAAAAAAGAAAAAG CCTTTTTTTT chrVIII:401076-401280 + 14 5.54e-06 AAGGGTTACA GAAAAAAAAAAGCAG GTCTGAAATG chrVIII:16178-18305 - 65 5.54e-06 TTTACGGAGA GAAATAAAAATAAAA ATAACTATGA chrV:51823-52938 + 83 6.19e-06 AGCAAAGTAA GAAAAAAGAATGAAG TGA chrIV:1354385-1355591 - 67 6.19e-06 TTCAAATTGC AAGAAGAAGAAAGAG AAAGAAAGGA chrVI:30806-32359 - 2 6.19e-06 GTGGTTCCAA GGAACAAAAAAAAAA A chrIV:322153-323649 + 31 6.76e-06 TCCAGAAAGA GAAACGAAGAAGAAG ACGCCAAGAA chrXI:578768-579397 + 65 6.76e-06 CAATGCTAAA GAAAAAAAATGAAAA TAAGTTTCAA chrXIII:145882-146201 - 16 7.17e-06 AGGTAAACAA GAAAAGGAAGAAAAG AACCCAGAAG chrXV:1003886-1004987 - 19 7.17e-06 AAAAGTACAA GAAAAGGAGAAGAAG AAAAATTTTT chrXV:380648-381160 + 41 7.69e-06 CCTCCTTTAA GGAATAAAGAAAAAA TCACATACAT chrXI:322446-322692 + 5 7.69e-06 CCAA GAAAAAGGGAAAAAG GTGGGGTTGG chrXII:448182-449008 + 49 8.61e-06 ATGGGCTAGC CAAATAAAAAAAAAA CTGTAGGCAC chrXIII:320974-321314 + 38 9.76e-06 GTTAGTTAGC CAAAAAAATAAAAAA TGGACGAGTC chrIV:116762-118913 + 77 9.76e-06 AAGAATCAAG GAAAAGAAAGTGAAA ATAGCATAC chrIV:1175550-1176298 - 46 9.76e-06 TTCATTTACT GAGAATAAAAAAAAG TACCGTGCTC chrII:592337-592813 - 27 9.76e-06 TTCAAATTAA GGAATGAAAAAGGAA TTTACGAAAA chrXIII:287459-287775 - 29 1.13e-05 GTTGCGCCGT GAGGAGAAAAAGAAA CTTAAAAGTG chrVIII:74776-76944 - 52 1.13e-05 GCTATATGCG AAAATGAGAAAAAAG GAACCGCTGA chrXVI:701825-702398 - 36 1.13e-05 AGATATAACT GAAAAAAGAGGGGAA TTTTTAGATA chrXI:645119-646043 - 40 1.13e-05 TACCGCAACT GAGGAAAAAAAGAAA TGCAGCGCTA chrX:348740-348840 - 83 1.13e-05 ATC GAAATGAAGATAAAA ATTTCCATCG chrX:155800-155900 - 7 1.13e-05 GATAAATATT GAATAAAAAGAAGAG GGGAAG chrXIV:392261-392742 - 16 1.41e-05 TCGGCAATCT GCAAAAAAAAAAAAC CCCCGCCGCT chrII:504500-504864 + 61 1.41e-05 CTCGTGGTAT GAGATAAATAAAGAA TGGAGCTTTT chrXII:875263-875676 - 53 1.41e-05 AAGTTGATAA AAAAAAAGTAAAGAA CTCCTCATAG chrI:180974-181477 - 80 1.41e-05 AGGAGG AAAAAGAAAAAATAA TGGTTGCTAA chrVI:226433-226931 + 42 1.41e-05 TTTTGTTAGA GAAAAAAAGAGATAA GCCCTGTAGG chrVII:323462-324640 + 13 1.41e-05 TCATTTTCGC GAATAAAAAATAGAA CACTGTAGAG chrIX:210518-211313 + 27 1.62e-05 AATGAGAATG GAAAAAAAATTAAAA AAACTCACAT chrIII:147791-148532 + 60 1.62e-05 GCCAATATTA GAAAAAAAAAAGGTG GAATATCCTA chrXIV:498835-503408 - 60 1.93e-05 ACTTGTAAAA AAGTAAAAAAAAAAA ATGCTTAAAG chrXI:158185-159649 + 37 2.17e-05 ATTCTGCACC GAGATGAGGAGAAAA AAGGAAGTTT chrXIV:575036-576161 + 61 2.17e-05 CAGTCTAAAT GCATAGAAAAAAAAA AATTCCCGCT chrV:250130-250570 - 57 2.17e-05 ATATTATGTA AAAATGAATAAAAAA GGTCCTACCC chrII:88929-89548 - 6 2.17e-05 AGCATATTTC AAGATAAGAAAAAAA TTCCG chrXV:1053827-1054610 - 76 2.17e-05 ATTTTTTAAT CAAATGAGAAAAAAG TATAACGATT chrXI:229637-231999 + 38 2.17e-05 CGCGGTAGGC GAAAAGCAAAGAAAA CTACAGTAAT chrXI:333699-335016 + 2 2.41e-05 G AGAAAAAAGAGAGAG AGGTTACATA chrVIII:488162-488653 + 14 2.41e-05 GAAAAATTTT CAAAAAAAAAAACAG ACCTAACAAA chrXVI:768919-769455 + 55 2.67e-05 GTAAAACGTG CAAAAAAGTAAAGAA CTCCTCATAG chrXI:83522-84418 - 14 2.91e-05 AACAACACAT AAAACAAAGAAGAAG TAATAATCTT chrIX:214400-214946 + 46 2.91e-05 CGTAACTTGA AAGATGAAAAGAGAG GTGACAACGT chrX:702408-702508 + 86 3.12e-05 CTTTCTGTAC GGAAAAAAATGAGAA chrVII:738442-739365 + 27 3.12e-05 GCGATATCAT AGAACGAAAAAAGAA GTAATCGTCA chrIII:82007-82767 + 28 3.12e-05 ACTATTTTTT GAAAAAAATAAAATG GTAATTTATT chrXIII:797955-798656 + 19 3.12e-05 TTTTTATCGT GGAAAAGGAAGAAAA TACTTGATAA chrXI:313106-313677 + 47 3.12e-05 AAGGCTAAAG GAAAAAAATAAAATG CCATCTCCTA chrIV:218283-218831 + 58 3.35e-05 ACTTCAATTT GAAATTAAGAAAAAA AAAGTGTAGT chrX:227727-227827 + 40 3.94e-05 TAAGAAACCG GAAACGAAATGAAAA TTGTTACTAC chrIX:388107-389134 - 56 4.33e-05 GAAAATTCCG GAGTAGAAAAAACAA CGTTGCCTGT chrXII:214611-215150 + 33 4.74e-05 AAATAAAGGA GAATAAAAGTAAAAA ATAAATGGAC chrXIII:499004-500836 + 81 4.74e-05 TTGACATAAC GAGTAAAGAGAAGAG CAGAG chrXI:109302-110610 + 40 4.74e-05 AAGCTCCAAA GCAAAGAAGAAGAAC TTACAGAGCT chrIV:802463-802997 + 35 5.18e-05 TGATTTGTTA GAGTAAAAATAAAAA GAGGTCCTAC chrXIII:837195-837400 - 51 5.18e-05 ATCTGTACAA GAGAAGAGTATGAAA TATGAATTAC chrIV:331487-333604 + 16 5.57e-05 AATTATCGAA GGAAAGGAAGAGGAA GCATCTAGGT chrXIII:131388-132132 + 18 5.97e-05 ATGTACGTAT AAAAAGAAAATGGAC TTCAAGAGTA chrIV:667701-668207 + 85 5.97e-05 TTTAACAATA GAGGAGAAAAAATAA A chrVII:774027-774582 - 62 7.41e-05 GATGAAAGGG GAGAATAGAGAAGAA TAATGAAGTA chrIII:162074-164143 + 36 8.02e-05 GTGCTGAAAT GGGAAGAGGAGAAAC AAACAAAGGA chrVII:535438-535831 - 77 8.02e-05 AGAAAACAG TAAAAGAAAATAAAA ATAACGTAAT chrXV:778209-779480 + 71 8.71e-05 GTATACTATC AAAATAAAAGTAGAA TAGAATTTGT chrIV:465147-465747 - 22 8.71e-05 GGAAAGACCT AAAGAAAATAGAAAA CGGATTTAAA chrV:141080-142217 - 16 1.22e-04 TCTAATTCAC AGATAGAAAATAAAA GGGTTCGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAARAAAAAAAAR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIX:96620-97461 3e-08 74_[-3]_11 chrV:225165-225714 6.4e-08 10_[+3]_75 chrXVI:699993-700730 7.4e-08 24_[+3]_61 chrVIII:504088-504650 1.8e-07 [+3]_85 chrIV:359404-359873 2.3e-07 84_[-3]_1 chrXI:46220-47006 2.3e-07 24_[+3]_61 chrVII:146120-149474 2.3e-07 16_[+3]_69 chrVII:930699-931218 2.7e-07 24_[+3]_61 chrIV:520734-521463 6.7e-07 77_[+3]_8 chrXIII:701685-703771 6.7e-07 11_[+3]_74 chrXIII:408459-409086 6.7e-07 51_[-3]_34 chrV:303871-307712 6.7e-07 57_[-3]_28 chrX:172672-172772 8.5e-07 60_[-3]_25 chrXIII:807725-808575 8.5e-07 67_[-3]_18 chrVIII:126033-126240 8.5e-07 63_[-3]_22 chrIV:1344868-1345786 8.5e-07 41_[+3]_44 chrII:478936-479587 1e-06 56_[+3]_29 chrVII:363897-364444 1.4e-06 62_[+3]_23 chrXIII:353408-353917 1.4e-06 66_[-3]_19 chrXI:518855-519462 1.7e-06 75_[+3]_10 chrVIII:455451-456201 1.7e-06 74_[+3]_11 chrXIV:632429-632894 1.7e-06 62_[-3]_23 chrV:166794-167893 1.7e-06 3_[+3]_82 chrVIII:85049-85573 1.7e-06 9_[+3]_76 chrIX:254982-257182 2.2e-06 79_[+3]_6 chrIV:416528-417137 2.7e-06 76_[+3]_9 chrXV:251499-253687 2.9e-06 49_[-3]_36 chrII:477152-477794 2.9e-06 82_[-3]_3 chrIV:1161412-1161913 3e-06 78_[-3]_7 chrXII:809015-810053 3.4e-06 39_[-3]_46 chrXII:793720-797403 4e-06 10_[+3]_75 chrXII:704222-704590 4e-06 84_[-3]_1 chrXIV:738463-740062 4e-06 18_[-3]_67 chrXVI:880036-880613 4e-06 [+3]_85 chrVII:1049936-1050784 4.7e-06 9_[+3]_76 chrIX:197376-197953 4.7e-06 52_[-3]_33 chrVII:986764-987990 4.7e-06 30_[-3]_55 chrXVI:571972-572886 4.7e-06 31_[-3]_54 chrIX:394554-395325 5.5e-06 52_[+3]_33 chrVIII:401076-401280 5.5e-06 13_[+3]_72 chrVIII:16178-18305 5.5e-06 64_[-3]_21 chrV:51823-52938 6.2e-06 82_[+3]_3 chrIV:1354385-1355591 6.2e-06 66_[-3]_19 chrVI:30806-32359 6.2e-06 1_[-3]_84 chrIV:322153-323649 6.8e-06 30_[+3]_55 chrXI:578768-579397 6.8e-06 64_[+3]_21 chrXIII:145882-146201 7.2e-06 15_[-3]_70 chrXV:1003886-1004987 7.2e-06 18_[-3]_67 chrXV:380648-381160 7.7e-06 40_[+3]_45 chrXI:322446-322692 7.7e-06 4_[+3]_81 chrXII:448182-449008 8.6e-06 48_[+3]_37 chrXIII:320974-321314 9.8e-06 37_[+3]_48 chrIV:116762-118913 9.8e-06 76_[+3]_9 chrIV:1175550-1176298 9.8e-06 45_[-3]_40 chrII:592337-592813 9.8e-06 26_[-3]_59 chrXIII:287459-287775 1.1e-05 28_[-3]_57 chrVIII:74776-76944 1.1e-05 51_[-3]_34 chrXVI:701825-702398 1.1e-05 35_[-3]_50 chrXI:645119-646043 1.1e-05 39_[-3]_46 chrX:348740-348840 1.1e-05 82_[-3]_3 chrX:155800-155900 1.1e-05 6_[-3]_79 chrXIV:392261-392742 1.4e-05 15_[-3]_70 chrII:504500-504864 1.4e-05 60_[+3]_25 chrXII:875263-875676 1.4e-05 52_[-3]_33 chrI:180974-181477 1.4e-05 79_[-3]_6 chrVI:226433-226931 1.4e-05 41_[+3]_44 chrVII:323462-324640 1.4e-05 12_[+3]_73 chrIX:210518-211313 1.6e-05 26_[+3]_59 chrIII:147791-148532 1.6e-05 59_[+3]_26 chrXIV:498835-503408 1.9e-05 59_[-3]_26 chrXI:158185-159649 2.2e-05 36_[+3]_49 chrXIV:575036-576161 2.2e-05 60_[+3]_25 chrV:250130-250570 2.2e-05 56_[-3]_29 chrII:88929-89548 2.2e-05 5_[-3]_80 chrXV:1053827-1054610 2.2e-05 75_[-3]_10 chrXI:229637-231999 2.2e-05 37_[+3]_48 chrXI:333699-335016 2.4e-05 1_[+3]_84 chrVIII:488162-488653 2.4e-05 13_[+3]_72 chrXVI:768919-769455 2.7e-05 54_[+3]_31 chrXI:83522-84418 2.9e-05 13_[-3]_72 chrIX:214400-214946 2.9e-05 45_[+3]_40 chrX:702408-702508 3.1e-05 85_[+3] chrVII:738442-739365 3.1e-05 26_[+3]_59 chrIII:82007-82767 3.1e-05 27_[+3]_58 chrXIII:797955-798656 3.1e-05 18_[+3]_67 chrXI:313106-313677 3.1e-05 46_[+3]_39 chrIV:218283-218831 3.3e-05 57_[+3]_28 chrX:227727-227827 3.9e-05 39_[+3]_46 chrIX:388107-389134 4.3e-05 55_[-3]_30 chrXII:214611-215150 4.7e-05 32_[+3]_53 chrXIII:499004-500836 4.7e-05 80_[+3]_5 chrXI:109302-110610 4.7e-05 39_[+3]_46 chrIV:802463-802997 5.2e-05 34_[+3]_51 chrXIII:837195-837400 5.2e-05 50_[-3]_35 chrIV:331487-333604 5.6e-05 15_[+3]_70 chrXIII:131388-132132 6e-05 17_[+3]_68 chrIV:667701-668207 6e-05 84_[+3]_1 chrVII:774027-774582 7.4e-05 61_[-3]_24 chrIII:162074-164143 8e-05 35_[+3]_50 chrVII:535438-535831 8e-05 76_[-3]_9 chrXV:778209-779480 8.7e-05 70_[+3]_15 chrIV:465147-465747 8.7e-05 21_[-3]_64 chrV:141080-142217 0.00012 15_[-3]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAARAAAAAAAAR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAAAARAAAAAAAAR width=15 seqs=103 chrIX:96620-97461 ( 75) GAAAAGAAAAAAAAA 1 chrV:225165-225714 ( 11) GAAAAAAAAAAAGAA 1 chrXVI:699993-700730 ( 25) GAAAAGAAAAAAGAG 1 chrVIII:504088-504650 ( 1) GAAAAAAAAAGAAAA 1 chrIV:359404-359873 ( 85) GAAAAAAAGAAAGAA 1 chrXI:46220-47006 ( 25) GAAAAGAAAAAGGAA 1 chrVII:146120-149474 ( 17) GAAAAGAGAAAAAAG 1 chrVII:930699-931218 ( 25) GAAAAAAGAAAAGAA 1 chrIV:520734-521463 ( 78) GAAAAAAGGAAAAAG 1 chrXIII:701685-703771 ( 12) GAAAAGAAGAGAAAG 1 chrXIII:408459-409086 ( 52) GAAAAAAAAGAAGAA 1 chrV:303871-307712 ( 58) AAAAAAAAAAAAAAG 1 chrX:172672-172772 ( 61) GAAAAAAAAAAAAAC 1 chrXIII:807725-808575 ( 68) GAAAAAAATAAAAAG 1 chrVIII:126033-126240 ( 64) GAAAAAAAAAAAAAC 1 chrIV:1344868-1345786 ( 42) GAAAAAAATAAAAAG 1 chrII:478936-479587 ( 57) GAAACAAAAAAAAAA 1 chrVII:363897-364444 ( 63) GAAAAAAAAGAGAAG 1 chrXIII:353408-353917 ( 67) CAAAAAAAAAAAAAA 1 chrXI:518855-519462 ( 76) GGAAAAAGAAAAAAG 1 chrVIII:455451-456201 ( 75) AAAAAAAAAAGAAAA 1 chrXIV:632429-632894 ( 63) GAAATAAGAAAAAAA 1 chrV:166794-167893 ( 4) AAAAAGAAAAGAAAA 1 chrVIII:85049-85573 ( 10) AAGAAAAAAAAAAAA 1 chrIX:254982-257182 ( 80) GAAATAAAAAAGGAA 1 chrIV:416528-417137 ( 77) AAGAAGAAAAAAGAG 1 chrXV:251499-253687 ( 50) GAGAAAAAAATAGAA 1 chrII:477152-477794 ( 83) GAAAAAAAAAAATAG 1 chrIV:1161412-1161913 ( 79) GAAAAAAAGGAGAAA 1 chrXII:809015-810053 ( 40) CAAAAAAAAAAGAAA 1 chrXII:793720-797403 ( 11) AAAAAAAAGAAGAAG 1 chrXII:704222-704590 ( 85) AAAATGAAAAAAAAA 1 chrXIV:738463-740062 ( 19) GGAAAAAGGAAAAAG 1 chrXVI:880036-880613 ( 1) GAAAAAGAAAGAGAA 1 chrVII:1049936-1050784 ( 10) GAAAAGGGAAAAGAG 1 chrIX:197376-197953 ( 53) AAAAAGAATAAAAAA 1 chrVII:986764-987990 ( 31) AAAAAAAATAAAAAA 1 chrXVI:571972-572886 ( 32) GAAAAGAAAGGGGAA 1 chrIX:394554-395325 ( 53) GCAAAAAAGAAAAAG 1 chrVIII:401076-401280 ( 14) GAAAAAAAAAAGCAG 1 chrVIII:16178-18305 ( 65) GAAATAAAAATAAAA 1 chrV:51823-52938 ( 83) GAAAAAAGAATGAAG 1 chrIV:1354385-1355591 ( 67) AAGAAGAAGAAAGAG 1 chrVI:30806-32359 ( 2) GGAACAAAAAAAAAA 1 chrIV:322153-323649 ( 31) GAAACGAAGAAGAAG 1 chrXI:578768-579397 ( 65) GAAAAAAAATGAAAA 1 chrXIII:145882-146201 ( 16) GAAAAGGAAGAAAAG 1 chrXV:1003886-1004987 ( 19) GAAAAGGAGAAGAAG 1 chrXV:380648-381160 ( 41) GGAATAAAGAAAAAA 1 chrXI:322446-322692 ( 5) GAAAAAGGGAAAAAG 1 chrXII:448182-449008 ( 49) CAAATAAAAAAAAAA 1 chrXIII:320974-321314 ( 38) CAAAAAAATAAAAAA 1 chrIV:116762-118913 ( 77) GAAAAGAAAGTGAAA 1 chrIV:1175550-1176298 ( 46) GAGAATAAAAAAAAG 1 chrII:592337-592813 ( 27) GGAATGAAAAAGGAA 1 chrXIII:287459-287775 ( 29) GAGGAGAAAAAGAAA 1 chrVIII:74776-76944 ( 52) AAAATGAGAAAAAAG 1 chrXVI:701825-702398 ( 36) GAAAAAAGAGGGGAA 1 chrXI:645119-646043 ( 40) GAGGAAAAAAAGAAA 1 chrX:348740-348840 ( 83) GAAATGAAGATAAAA 1 chrX:155800-155900 ( 7) GAATAAAAAGAAGAG 1 chrXIV:392261-392742 ( 16) GCAAAAAAAAAAAAC 1 chrII:504500-504864 ( 61) GAGATAAATAAAGAA 1 chrXII:875263-875676 ( 53) AAAAAAAGTAAAGAA 1 chrI:180974-181477 ( 80) AAAAAGAAAAAATAA 1 chrVI:226433-226931 ( 42) GAAAAAAAGAGATAA 1 chrVII:323462-324640 ( 13) GAATAAAAAATAGAA 1 chrIX:210518-211313 ( 27) GAAAAAAAATTAAAA 1 chrIII:147791-148532 ( 60) GAAAAAAAAAAGGTG 1 chrXIV:498835-503408 ( 60) AAGTAAAAAAAAAAA 1 chrXI:158185-159649 ( 37) GAGATGAGGAGAAAA 1 chrXIV:575036-576161 ( 61) GCATAGAAAAAAAAA 1 chrV:250130-250570 ( 57) AAAATGAATAAAAAA 1 chrII:88929-89548 ( 6) AAGATAAGAAAAAAA 1 chrXV:1053827-1054610 ( 76) CAAATGAGAAAAAAG 1 chrXI:229637-231999 ( 38) GAAAAGCAAAGAAAA 1 chrXI:333699-335016 ( 2) AGAAAAAAGAGAGAG 1 chrVIII:488162-488653 ( 14) CAAAAAAAAAAACAG 1 chrXVI:768919-769455 ( 55) CAAAAAAGTAAAGAA 1 chrXI:83522-84418 ( 14) AAAACAAAGAAGAAG 1 chrIX:214400-214946 ( 46) AAGATGAAAAGAGAG 1 chrX:702408-702508 ( 86) GGAAAAAAATGAGAA 1 chrVII:738442-739365 ( 27) AGAACGAAAAAAGAA 1 chrIII:82007-82767 ( 28) GAAAAAAATAAAATG 1 chrXIII:797955-798656 ( 19) GGAAAAGGAAGAAAA 1 chrXI:313106-313677 ( 47) GAAAAAAATAAAATG 1 chrIV:218283-218831 ( 58) GAAATTAAGAAAAAA 1 chrX:227727-227827 ( 40) GAAACGAAATGAAAA 1 chrIX:388107-389134 ( 56) GAGTAGAAAAAACAA 1 chrXII:214611-215150 ( 33) GAATAAAAGTAAAAA 1 chrXIII:499004-500836 ( 81) GAGTAAAGAGAAGAG 1 chrXI:109302-110610 ( 40) GCAAAGAAGAAGAAC 1 chrIV:802463-802997 ( 35) GAGTAAAAATAAAAA 1 chrXIII:837195-837400 ( 51) GAGAAGAGTATGAAA 1 chrIV:331487-333604 ( 16) GGAAAGGAAGAGGAA 1 chrXIII:131388-132132 ( 18) AAAAAGAAAATGGAC 1 chrIV:667701-668207 ( 85) GAGGAGAAAAAATAA 1 chrVII:774027-774582 ( 62) GAGAATAGAGAAGAA 1 chrIII:162074-164143 ( 36) GGGAAGAGGAGAAAC 1 chrVII:535438-535831 ( 77) TAAAAGAAAATAAAA 1 chrXV:778209-779480 ( 71) AAAATAAAAGTAGAA 1 chrIV:465147-465747 ( 22) AAAGAAAATAGAAAA 1 chrV:141080-142217 ( 16) AGATAGAAAATAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAARAAAAAAAAR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 10.124 E= 2.0e-049 -44 -143 191 -502 142 -224 -65 -1333 136 -1333 1 -1333 146 -1333 -224 -186 129 -165 -1333 -94 93 -1333 101 -344 154 -424 -143 -1333 133 -1333 15 -1333 108 -1333 15 -133 138 -1333 -65 -244 116 -1333 -7 -144 131 -1333 22 -1333 102 -265 67 -303 162 -1333 -1333 -344 95 -165 85 -1333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAARAAAAAAAAR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 103 E= 2.0e-049 0.233010 0.067961 0.689320 0.009709 0.844660 0.038835 0.116505 0.000000 0.815534 0.000000 0.184466 0.000000 0.873786 0.000000 0.038835 0.087379 0.776699 0.058252 0.000000 0.165049 0.601942 0.000000 0.368932 0.029126 0.922330 0.009709 0.067961 0.000000 0.796117 0.000000 0.203883 0.000000 0.669903 0.000000 0.203883 0.126214 0.825243 0.000000 0.116505 0.058252 0.708738 0.000000 0.174757 0.116505 0.786408 0.000000 0.213592 0.000000 0.640777 0.029126 0.291262 0.038835 0.970874 0.000000 0.000000 0.029126 0.611650 0.058252 0.330097 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAARAAAAAAAAR MEME-3 regular expression -------------------------------------------------------------------------------- [GA]AAAA[AG]A[AG][AG]AA[AG][AG]A[AG] -------------------------------------------------------------------------------- Time 993.72 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:332160-334579 7.24e-01 100 chrVIII:85049-85573 1.65e-11 9_[+3(1.73e-06)]_20_[+1(6.56e-12)]_\ 26 chrXIV:628108-629344 9.21e-02 100 chrVI:147889-148921 2.32e-02 100 chrXI:100216-107402 6.04e-01 100 chrI:150857-151997 5.93e-01 100 chrIV:1245669-1246243 1.14e-01 100 chrXVI:810444-811064 7.21e-06 7_[-1(9.77e-10)]_63 chrXIII:420020-420928 2.90e-01 100 chrVII:323462-324640 3.86e-03 12_[+3(1.41e-05)]_73 chrVII:185345-186150 3.79e-13 24_[+1(5.03e-12)]_6_[+2(7.87e-09)]_\ 10 chrXI:229637-231999 1.25e-02 37_[+3(2.17e-05)]_48 chrIV:551383-551600 8.17e-01 100 chrIII:112193-115198 4.80e-01 100 chrXVI:282060-283371 6.16e-01 100 chrIV:980751-981246 4.11e-02 100 chrXI:355229-356547 3.02e-02 53_[-1(1.76e-05)]_17 chrIX:231017-232441 1.04e-01 100 chrXIV:302554-303727 1.88e-01 100 chrIV:892190-892698 5.16e-01 100 chrXII:167745-168297 2.67e-07 25_[+2(7.88e-11)]_45 chrIX:214400-214946 8.30e-03 45_[+3(2.91e-05)]_40 chrII:237666-239363 3.01e-01 100 chrXI:307898-308414 4.91e-09 45_[+1(6.56e-12)]_25 chrXV:1053827-1054610 4.27e-02 75_[-3(2.17e-05)]_10 chrVII:205041-207038 1.65e-01 100 chrXV:594143-594816 9.99e-01 100 chrXI:519748-521044 4.34e-01 100 chrVII:771932-772931 6.65e-02 100 chrXV:677888-679051 9.61e-01 100 chrXII:948643-953615 5.73e-01 100 chrV:66874-69364 2.05e-01 100 chrXVI:435521-436238 6.87e-03 100 chrII:477152-477794 4.89e-03 82_[-3(2.91e-06)]_3 chrIV:568543-569291 1.42e-12 13_[-2(3.59e-08)]_5_[-1(5.03e-12)]_\ 22 chrXV:487184-487716 9.68e-07 37_[-2(6.25e-09)]_33 chrIV:667701-668207 6.88e-02 84_[+3(5.97e-05)]_1 chrXIII:549852-551275 5.30e-02 29_[+1(6.89e-05)]_41 chrVI:30806-32359 1.57e-02 1_[-3(6.19e-06)]_84 chrXII:611705-612025 3.37e-01 100 chrI:20666-21460 9.55e-01 100 chrX:374167-374267 5.78e-08 38_[+1(5.03e-12)]_32 chrVI:226433-226931 2.58e-10 41_[+3(1.41e-05)]_7_[+1(5.03e-12)]_\ 7 chrVIII:160487-160915 9.39e-02 100 chrXII:711369-713424 5.31e-01 100 chrXIII:91806-92128 3.02e-01 100 chrXIII:880245-880836 8.67e-01 100 chrXIV:506700-507696 4.09e-02 100 chrI:197957-198867 8.22e-01 100 chrXVI:730682-731337 5.57e-01 100 chrXII:921872-922518 8.09e-02 100 chrIV:1352327-1352719 4.35e-13 [+1(5.03e-12)]_6_[+2(7.87e-09)]_34 chrXV:424025-424860 4.88e-01 100 chrXIII:23609-25996 9.02e-01 100 chrVII:786979-788193 8.90e-01 100 chrXI:364156-365280 8.76e-01 100 chrX:155800-155900 1.27e-03 6_[-3(1.13e-05)]_79 chrV:504368-505299 9.94e-01 100 chrXVI:153451-154470 9.07e-01 100 chrV:438085-439190 7.02e-01 100 chrXI:162207-162753 6.01e-08 64_[+1(5.03e-12)]_6 chrXII:672999-676682 9.61e-01 100 chrXI:490680-491387 3.18e-06 19_[-1(6.36e-09)]_51 chrX:542753-542853 7.03e-01 100 chrV:130827-131426 4.96e-13 13_[+1(2.19e-12)]_5_[+2(2.79e-08)]_\ 22 chrIV:913953-914860 5.93e-02 100 chrVI:157518-158485 2.06e-05 27_[+2(7.29e-09)]_43 chrXIII:222575-223884 6.56e-02 100 chrXIII:767529-768598 5.00e-01 100 chrXII:897695-899774 2.41e-01 100 chrXII:282059-283900 8.50e-01 100 chrVII:881790-884119 1.05e-01 100 chrX:701700-701800 3.09e-01 100 chrII:81527-83923 6.75e-01 100 chrXII:809015-810053 1.04e-02 39_[-3(3.38e-06)]_46 chrII:680371-682150 1.16e-01 100 chrV:151122-153553 2.46e-01 100 chrXII:198332-199718 6.14e-01 100 chrIV:992595-993522 5.35e-01 100 chrXI:589060-589230 3.32e-01 100 chrIII:124441-125322 9.15e-01 100 chrXVI:377904-378489 8.25e-01 100 chrV:422810-425335 4.85e-01 100 chrXIV:498835-503408 4.74e-02 59_[-3(1.93e-05)]_26 chrVII:706709-707298 9.24e-01 100 chrXII:124875-126108 5.49e-01 100 chrII:45569-46640 7.27e-01 100 chrXII:734710-735300 6.16e-01 100 chrXV:796809-797728 8.29e-01 100 chrVII:959350-959630 1.86e-01 100 chrV:569396-569732 6.21e-01 100 chrX:541358-541458 5.28e-02 [+1(9.51e-05)]_70 chrXV:925218-925439 5.64e-01 100 chrIV:129434-130934 3.36e-01 100 chrXV:581-971 9.80e-01 100 chrVII:544310-546155 7.58e-01 100 chrXVI:108556-112598 6.81e-01 100 chrXII:348065-349582 8.29e-01 100 chrXVI:789491-789975 7.66e-02 100 chrVIII:145945-146424 9.96e-01 100 chrV:303871-307712 2.55e-03 58_[-3(5.00e-07)]_27 chrXI:458375-459043 3.61e-01 100 chrXVI:555321-556413 4.27e-01 100 chrXII:853453-854163 5.11e-01 100 chrXII:83951-84432 3.85e-01 100 chrII:555837-559216 8.46e-01 100 chrVII:939028-939753 4.70e-01 100 chrXVI:880036-880613 9.29e-22 [+3(3.99e-06)]_14_[+1(2.13e-13)]_7_\ [+2(1.95e-13)]_4 chrXII:855618-857721 6.09e-01 100 chrXIV:720686-722728 6.53e-02 100 chrXII:941001-941281 8.42e-01 100 chrII:592337-592813 2.29e-02 26_[-3(9.76e-06)]_59 chrV:301502-303495 3.60e-01 100 chrV:469254-469753 1.13e-15 2_[-2(9.57e-12)]_7_[-1(6.56e-12)]_\ 31 chrIX:299977-300683 8.11e-01 100 chrXVI:930657-931189 2.90e-01 100 chrXV:407605-408233 9.93e-01 100 chrXII:737730-738297 5.44e-01 100 chrIV:1329291-1329603 1.03e-01 100 chrXV:300783-301494 8.53e-06 7_[-2(3.55e-09)]_63 chrIV:331487-333604 8.41e-02 15_[+3(5.57e-05)]_70 chrXIII:388311-388586 4.91e-02 28_[-1(1.99e-05)]_42 chrVIII:16178-18305 2.16e-02 64_[-3(5.54e-06)]_21 chrIV:472801-473877 2.72e-01 100 chrV:166794-167893 2.07e-03 3_[+3(1.73e-06)]_82 chrVII:310471-312449 1.71e-01 100 chrXV:899955-901282 1.34e-01 100 chrXIII:540321-541070 5.68e-02 100 chrXV:709979-710495 5.38e-07 12_[-2(6.52e-05)]_5_[-1(7.84e-09)]_\ 23 chrX:233654-233754 7.28e-02 100 chrVII:412122-412587 1.09e-07 34_[+2(9.57e-12)]_36 chrX:153097-153197 9.20e-01 100 chrXII:370502-371917 7.33e-01 100 chrXI:617656-619423 1.53e-01 100 chrIV:449018-450095 9.22e-01 100 chrXIII:408459-409086 1.49e-03 27_[-3(8.71e-05)]_9_[-3(6.67e-07)]_\ 34 chrXIV:104616-105215 2.57e-01 100 chrIV:1016741-1017945 5.14e-01 100 chrVII:316390-317469 4.05e-01 100 chrXI:260533-261005 2.60e-02 63_[-2(5.07e-05)]_7 chrXI:109302-110610 1.93e-03 39_[+3(4.74e-05)]_46 chrV:60861-62166 3.85e-01 100 chrXI:313106-313677 2.60e-07 46_[+3(3.12e-05)]_6_[+1(2.96e-08)]_\ 3 chrII:350524-351129 3.28e-04 49_[-2(7.75e-08)]_21 chrX:138997-139097 5.24e-01 100 chrIV:579031-581183 2.29e-01 100 chrVII:227479-228035 1.02e-01 100 chrX:348740-348840 4.10e-02 82_[-3(1.13e-05)]_3 chrIV:234319-234571 6.54e-01 100 chrVII:844627-845903 7.56e-01 100 chrXIII:701685-703771 2.53e-04 11_[+3(6.67e-07)]_74 chrII:613105-613471 8.53e-01 100 chrXIII:295861-299002 3.76e-01 100 chrXII:817480-820561 4.94e-01 100 chrVIII:21056-21319 2.86e-01 100 chrV:42197-42450 7.91e-01 100 chrI:182363-182748 2.14e-08 69_[+2(7.88e-11)]_1 chrVIII:384866-387019 2.55e-01 100 chrXVI:280526-281752 5.79e-01 100 chrII:164484-165838 2.74e-01 100 chrVII:876211-876954 4.43e-01 100 chrII:606204-607548 4.48e-01 100 chrIV:507616-509990 4.57e-01 100 chrVI:118835-119102 8.45e-01 100 chrXII:837581-839481 9.16e-01 100 chrXII:86858-87213 4.66e-01 100 chrXII:805342-807248 3.40e-01 100 chrIV:465147-465747 1.77e-01 21_[-3(8.71e-05)]_64 chrX:204341-204441 4.11e-01 100 chrIV:489521-490255 4.43e-01 100 chrVIII:488162-488653 7.18e-03 13_[+3(2.41e-05)]_72 chrXIV:738463-740062 1.13e-03 18_[-3(3.99e-06)]_67 chrXI:140714-142186 5.03e-01 100 chrXIII:797955-798656 8.15e-03 18_[+3(3.12e-05)]_67 chrVII:919553-920121 2.09e-01 100 chrXIV:350917-352938 7.68e-01 100 chrX:121215-121315 9.54e-01 100 chrIV:975915-976740 6.56e-02 100 chrX:58691-58791 5.38e-07 39_[+1(3.66e-11)]_31 chrV:287430-287724 6.91e-01 100 chrXII:704222-704590 2.85e-03 84_[-3(3.99e-06)]_1 chrXVI:818717-819868 5.59e-01 100 chrIV:619581-620370 9.99e-06 51_[+1(6.36e-09)]_19 chrIV:1354385-1355591 2.05e-02 66_[-3(6.19e-06)]_19 chrXVI:794897-796068 4.66e-01 100 chrXV:464072-464769 2.80e-01 100 chrX:453335-453435 8.31e-01 100 chrXIV:632429-632894 3.92e-09 23_[-1(9.77e-10)]_9_[-3(1.73e-06)]_\ 23 chrX:26252-26352 1.43e-01 100 chrIII:147791-148532 9.66e-03 59_[+3(1.62e-05)]_26 chrIV:1269839-1271069 2.81e-01 100 chrVII:701781-703850 1.15e-02 19_[+1(8.32e-05)]_51 chrII:413729-415334 3.38e-01 100 chrXI:322446-322692 5.04e-03 4_[+3(7.69e-06)]_81 chrXV:988903-989493 2.73e-01 100 chrVII:823262-823686 3.30e-08 56_[-2(9.57e-12)]_14 chrXIV:576559-577368 4.96e-01 100 chrX:197162-197262 2.83e-10 17_[+2(5.89e-15)]_53 chrVII:958667-959037 7.39e-01 100 chrVIII:562347-562559 3.75e-01 100 chrXIV:619446-620092 7.61e-01 100 chrXIII:551458-553325 3.13e-01 100 chrIII:142066-143405 3.66e-14 23_[+1(3.34e-12)]_4_[+2(7.87e-09)]_\ 13 chrXIV:229422-231062 5.23e-01 100 chrVII:146120-149474 1.55e-03 16_[+3(2.30e-07)]_6_[+3(3.94e-05)]_\ 48 chrXI:309100-310005 8.13e-01 100 chrV:221427-221784 6.29e-01 100 chrIV:1362033-1362566 1.69e-02 100 chrVI:222961-223866 5.06e-02 26_[-2(2.84e-05)]_44 chrII:88929-89548 6.20e-02 5_[-3(2.17e-05)]_13_[-3(2.67e-05)]_\ 52 chrIV:76857-77337 5.04e-02 100 chrXII:669143-669639 8.74e-01 100 chrIV:155545-156359 4.16e-01 100 chrXI:645119-646043 3.08e-02 39_[-3(1.13e-05)]_46 chrXV:91805-94749 7.52e-01 100 chrXII:687650-688131 7.31e-16 26_[+1(6.56e-12)]_7_[+2(7.15e-12)]_\ 7 chrV:85144-86914 6.76e-01 100 chrXVI:188080-189224 1.59e-02 22_[+1(4.19e-05)]_48 chrXI:302511-303213 4.75e-01 100 chrXV:87400-88182 3.46e-01 100 chrXIII:353408-353917 9.38e-03 66_[-3(1.37e-06)]_19 chrX:414790-414890 8.76e-01 100 chrIV:434020-434574 1.20e-14 24_[+1(3.66e-11)]_6_[+2(3.28e-11)]_\ 10 chrXV:903215-905228 2.73e-01 100 chrVIII:455451-456201 1.33e-03 74_[+3(1.73e-06)]_11 chrXIII:499004-500836 9.99e-02 80_[+3(4.74e-05)]_5 chrIX:96620-97461 3.83e-05 74_[-3(2.99e-08)]_11 chrXII:426903-427566 6.44e-01 100 chrV:449581-450329 7.54e-01 100 chrIV:216396-218089 7.79e-01 100 chrVI:191316-191802 5.64e-02 100 chrXV:728385-730174 2.83e-01 100 chrVII:94263-94804 1.00e+00 100 chrXV:618648-619006 1.35e-01 79_[-3(9.36e-05)]_6 chrIII:82007-82767 5.64e-02 27_[+3(3.12e-05)]_58 chrV:268884-270269 6.99e-01 100 chrXII:962740-963534 3.63e-01 100 chrVI:100968-101696 6.97e-01 100 chrXIII:195914-196404 4.55e-06 32_[+2(1.78e-09)]_38 chrIV:1175550-1176298 2.37e-02 45_[-3(9.76e-06)]_40 chrXI:46220-47006 1.17e-03 24_[+3(2.30e-07)]_61 chrXI:163195-164547 6.26e-01 100 chrVIII:555978-557102 9.29e-02 13_[-2(4.40e-05)]_57 chrV:406503-409465 6.36e-01 100 chrXV:274505-275004 3.58e-01 100 chrIII:58-430 5.33e-01 100 chrXVI:701825-702398 1.44e-02 35_[-3(1.13e-05)]_50 chrVII:806099-807789 5.82e-01 100 chrXV:380648-381160 2.42e-02 14_[-3(7.41e-05)]_11_[+3(7.69e-06)]_\ 45 chrX:124681-124781 7.42e-01 100 chrIV:1162628-1164694 3.63e-01 100 chrXI:146856-147414 2.75e-01 100 chrXII:65463-65740 7.46e-01 100 chrXII:731913-732247 1.05e-07 58_[-2(1.27e-11)]_12 chrXII:628049-628936 3.38e-01 100 chrVII:989735-990803 1.96e-01 100 chrXVI:678866-679833 7.01e-01 100 chrIII:197295-197912 1.86e-01 100 chrX:663559-663659 2.87e-01 100 chrXII:793720-797403 1.98e-02 10_[+3(3.99e-06)]_75 chrIV:555340-556678 1.68e-02 30_[-2(8.36e-05)]_40 chrIX:177600-178066 4.66e-02 100 chrII:372744-375863 2.03e-01 100 chrXV:960859-963197 2.29e-01 100 chrIV:491441-492667 3.55e-01 100 chrVII:254173-254741 8.11e-01 100 chrXVI:514031-517139 4.18e-01 100 chrXIII:306078-307393 3.44e-01 100 chrXIV:102507-103095 1.87e-07 [-1(9.77e-10)]_70 chrXVI:571972-572886 1.37e-02 31_[-3(4.72e-06)]_54 chrII:59537-61155 4.16e-01 100 chrXII:459653-460695 2.96e-01 100 chrXII:1051377-1052414 4.42e-01 100 chrIX:370155-370640 3.15e-02 100 chrXV:977893-978679 5.61e-01 100 chrVI:180609-181232 4.00e-01 100 chrV:250130-250570 2.35e-10 19_[-1(1.05e-12)]_7_[-3(2.17e-05)]_\ 29 chrXIII:556989-557651 9.70e-01 100 chrXIII:5400-5692 4.71e-01 100 chrXI:38595-39247 7.55e-01 100 chrIV:1449869-1451302 1.82e-01 100 chrII:548179-549541 1.40e-01 100 chrIV:1344868-1345786 5.62e-03 41_[+3(8.45e-07)]_44 chrVII:736196-736824 2.87e-01 100 chrIII:262731-263061 3.29e-01 100 chrVI:204842-205193 1.34e-11 [+2(4.36e-14)]_70 chrII:444532-445061 1.97e-01 100 chrX:415864-415964 1.72e-01 100 chrVII:115272-115779 5.15e-11 11_[-2(1.52e-08)]_29_[-1(3.62e-10)] chrXI:578768-579397 1.52e-03 64_[+3(6.76e-06)]_21 chrVII:738442-739365 3.86e-02 26_[+3(3.12e-05)]_59 chrII:405248-406777 1.50e-04 31_[-1(3.52e-08)]_39 chrX:223862-223962 4.06e-01 100 chrV:235257-236389 1.14e-01 100 chrVII:541595-542179 1.84e-09 46_[-1(5.75e-12)]_24 chrXII:636629-640285 1.74e-01 100 chrII:87926-88612 2.81e-01 100 chrXV:412096-413625 3.25e-01 100 chrXV:287883-288426 6.21e-01 100 chrIX:325503-326081 2.29e-15 4_[-2(3.28e-11)]_6_[-1(3.66e-11)]_\ 30 chrXV:867068-868421 4.85e-01 100 chrX:435617-435717 4.49e-01 100 chrXII:708033-711197 5.45e-01 100 chrVIII:74776-76944 1.15e-02 51_[-3(1.13e-05)]_34 chrXII:201404-203075 1.52e-01 100 chrIV:1161412-1161913 2.68e-03 78_[-3(3.03e-06)]_7 chrXI:518855-519462 2.81e-03 75_[+3(1.73e-06)]_10 chrIII:123334-123784 2.22e-02 63_[-1(9.51e-05)]_7 chrII:530237-532244 6.85e-01 100 chrVIII:553454-553921 6.20e-01 100 chrXII:932172-932533 5.47e-02 100 chrVII:479059-482988 9.72e-02 100 chrXV:1003886-1004987 1.76e-02 18_[-3(7.17e-06)]_67 chrIV:437561-438247 1.79e-01 100 chrV:18511-19255 8.57e-01 100 chrI:180974-181477 1.50e-02 79_[-3(1.41e-05)]_6 chrXI:24658-26548 8.62e-01 100 chrIX:386638-387032 4.99e-02 55_[+1(1.34e-05)]_15 chrX:620506-620606 1.24e-01 100 chrXIII:837195-837400 7.33e-02 50_[-3(5.18e-05)]_35 chrIV:487983-489207 3.48e-01 100 chrXI:517764-518109 9.77e-01 100 chrV:434376-434771 2.02e-07 25_[+1(2.96e-08)]_5_[+2(7.29e-05)]_\ 10 chrV:206823-207833 9.94e-01 100 chrXVI:98683-99193 9.01e-02 100 chrV:441817-442676 9.47e-01 100 chrX:396177-396277 4.28e-02 100 chrXV:778209-779480 1.21e-01 70_[+3(8.71e-05)]_15 chrIV:1359859-1361226 8.90e-02 100 chrXIV:64861-65033 2.40e-01 100 chrXIV:413111-418543 2.89e-01 100 chrXIII:731489-733595 6.21e-01 100 chrX:702408-702508 2.45e-03 85_[+3(3.12e-05)] chrVIII:410640-411855 9.15e-01 100 chrXV:363821-364145 6.91e-01 100 chrVIII:504863-505624 5.17e-01 100 chrXIII:299174-299370 5.19e-01 100 chrXV:663483-664254 1.13e-15 1_[+1(6.56e-12)]_7_[+2(9.57e-12)]_\ 32 chrIII:168863-169249 9.56e-01 100 chrXIV:234203-235154 5.03e-02 100 chrXIII:168611-169065 6.42e-07 5_[-2(7.29e-05)]_22_[-1(2.06e-09)]_\ 13 chrXII:657530-658026 4.18e-01 100 chrXIII:290497-291343 3.67e-01 100 chrIV:490437-491199 1.61e-01 100 chrXI:558613-559483 1.80e-01 100 chrXV:167504-168528 2.07e-01 100 chrXVI:575214-576475 4.27e-01 100 chrII:168342-169776 1.68e-01 100 chrVII:779416-779923 1.22e-07 30_[-1(5.75e-10)]_40 chrXIII:872680-872951 4.00e-01 100 chrVII:774027-774582 1.02e-01 61_[-3(7.41e-05)]_24 chrVII:986764-987990 4.71e-03 30_[-3(4.72e-06)]_55 chrVII:363897-364444 6.29e-03 26_[-3(7.69e-06)]_21_[+3(1.37e-06)]_\ 23 chrVII:914745-915236 3.36e-01 100 chrXV:409485-410258 4.74e-01 100 chrIV:520734-521463 1.65e-03 77_[+3(6.67e-07)]_8 chrXV:80295-83450 1.07e-01 100 chrVII:857214-857624 5.79e-01 100 chrXVI:689326-689869 5.67e-07 16_[-2(1.42e-10)]_54 chrI:28004-29716 4.35e-01 100 chrXII:374207-374716 7.11e-01 100 chrXV:631792-632067 1.83e-01 100 chrXIV:776778-777115 3.02e-01 100 chrV:363605-364541 2.81e-01 100 chrVII:110400-110893 2.95e-04 36_[+1(2.96e-08)]_34 chrII:36160-36525 4.75e-01 100 chrXVI:775637-776161 9.55e-01 100 chrVII:436603-438405 7.99e-01 100 chrII:301118-301810 6.23e-01 100 chrV:176886-177559 1.74e-01 100 chrXV:251499-253687 2.30e-03 49_[-3(2.91e-06)]_36 chrX:115446-115546 3.78e-01 100 chrX:124202-124302 6.14e-01 100 chrVIII:517765-519106 4.55e-01 100 chrII:9371-9951 1.41e-01 100 chrXIV:442860-444331 4.64e-01 100 chrX:227727-227827 1.05e-02 39_[+3(3.94e-05)]_46 chrIV:116762-118913 7.21e-03 76_[+3(9.76e-06)]_9 chrVIII:132791-134672 9.11e-01 100 chrIII:107072-107831 2.21e-01 100 chrXII:656675-657177 1.70e-07 65_[+1(1.83e-10)]_5 chrIX:141546-142957 5.33e-01 100 chrIV:308093-310512 3.36e-01 100 chrVII:345838-346985 1.69e-01 100 chrXV:738734-739556 9.29e-01 100 chrXII:810531-814587 6.59e-01 100 chrXV:853983-854852 8.85e-02 100 chrXI:439876-440978 2.69e-01 100 chrVIII:126033-126240 5.95e-03 63_[-3(8.45e-07)]_22 chrVIII:466746-467275 4.60e-10 28_[-2(4.32e-08)]_5_[-1(2.23e-09)]_\ 7 chrIII:168083-168633 2.75e-13 [+1(1.05e-12)]_5_[+2(2.14e-08)]_35 chrXII:930618-931851 7.27e-02 100 chrVII:364842-366755 4.34e-01 100 chrXVI:718376-719552 4.43e-01 100 chrVIII:401076-401280 4.74e-03 13_[+3(5.54e-06)]_72 chrXI:426202-428731 4.10e-01 100 chrV:443010-443507 1.02e-18 1_[+1(2.13e-13)]_7_[+2(1.95e-13)]_\ 32 chrVII:783778-785625 4.01e-01 100 chrI:141564-143721 3.43e-01 100 chrV:122120-123098 1.94e-01 100 chrIX:394554-395325 1.02e-02 52_[+3(5.54e-06)]_33 chrXVI:412247-413551 7.81e-01 100 chrXV:384431-385093 1.21e-01 100 chrXV:159255-160760 5.75e-01 100 chrXIII:504567-505226 1.53e-05 47_[-2(1.95e-09)]_23 chrVII:23836-26270 2.93e-01 100 chrXV:877650-878032 9.01e-01 100 chrV:225165-225714 4.59e-04 10_[+3(6.44e-08)]_6_[-3(8.45e-07)]_\ 16_[-3(3.35e-05)]_23 chrIX:254982-257182 7.57e-03 79_[+3(2.15e-06)]_6 chrII:234644-236007 6.64e-01 100 chrVIII:451049-453197 1.68e-01 100 chrIV:1401671-1403652 7.93e-01 100 chrXI:333699-335016 4.97e-02 1_[+3(2.41e-05)]_84 chrX:355148-355248 5.20e-10 17_[-1(5.03e-12)]_17_[-2(1.97e-05)]_\ 6 chrIX:197376-197953 2.44e-10 11_[-1(5.75e-12)]_11_[-3(4.72e-06)]_\ 33 chrVII:483350-483738 2.57e-01 100 chrIV:1447191-1447536 1.82e-01 100 chrV:237851-238941 5.36e-01 100 chrI:202333-203165 1.39e-01 100 chrXIII:747744-748178 1.37e-05 23_[+2(3.59e-08)]_47 chrII:604293-605989 5.77e-01 100 chrXVI:768919-769455 2.55e-02 54_[+3(2.67e-05)]_31 chrXII:875263-875676 1.86e-08 14_[-1(3.62e-10)]_8_[-3(1.41e-05)]_\ 33 chrXIV:575036-576161 6.22e-02 60_[+3(2.17e-05)]_25 chrV:51823-52938 2.85e-02 82_[+3(6.19e-06)]_3 chrXIII:259002-259524 5.01e-01 100 chrX:523823-523923 3.38e-08 56_[+2(6.18e-11)]_14 chrXIII:131388-132132 7.68e-02 17_[+3(5.97e-05)]_68 chrIV:1022778-1023178 9.37e-01 100 chrVIII:210847-212266 3.11e-01 100 chrXI:258372-259923 2.63e-01 100 chrVII:798879-800322 5.11e-01 100 chrXV:980489-981445 4.73e-01 100 chrXVI:40147-40569 1.30e-01 100 chrIV:1233394-1234321 8.46e-01 100 chrXII:149285-151432 5.08e-01 100 chrXII:489297-489532 9.94e-03 53_[-2(5.97e-06)]_17 chrVII:599337-600312 5.70e-01 100 chrXII:605134-605695 2.17e-07 39_[+2(1.26e-10)]_31 chrXVI:856769-857084 1.57e-16 24_[-2(4.36e-14)]_6_[-1(1.83e-10)]_\ 10 chrIII:127547-128382 7.42e-01 100 chrV:141080-142217 7.83e-02 100 chrIV:645000-645540 5.00e-01 100 chrXV:353820-354350 1.53e-14 13_[+1(3.66e-11)]_6_[+2(4.25e-11)]_\ 21 chrXIII:183699-184200 5.06e-13 6_[+1(3.34e-12)]_4_[+2(1.42e-08)]_\ 30 chrIV:1080496-1081045 4.67e-01 100 chrX:75859-75959 2.31e-01 100 chrII:135942-136330 5.24e-02 64_[+1(5.53e-05)]_6 chrXV:505152-505413 2.48e-01 100 chrXIII:426257-426588 5.96e-01 100 chrVII:422875-423572 3.36e-01 100 chrIX:210518-211313 4.73e-02 26_[+3(1.62e-05)]_59 chrI:14699-15149 9.08e-01 100 chrXII:92255-92874 1.46e-06 32_[-2(1.78e-09)]_38 chrXI:74340-75009 1.46e-07 35_[-1(9.77e-10)]_35 chrXIV:771713-772377 9.23e-01 100 chrIV:540805-542424 5.96e-01 100 chrX:18809-18909 4.20e-01 100 chrXIII:807725-808575 3.27e-03 67_[-3(8.45e-07)]_18 chrXIII:388912-391142 1.64e-01 100 chrXV:680213-680961 4.29e-01 100 chrVII:878260-879322 9.30e-03 45_[+2(3.92e-05)]_25 chrV:28005-29853 6.37e-01 100 chrII:478936-479587 2.49e-03 56_[+3(1.01e-06)]_29 chrII:236270-237345 1.97e-01 100 chrVII:535438-535831 1.05e-01 76_[-3(8.02e-05)]_9 chrII:197169-197863 6.95e-19 26_[-2(1.29e-13)]_7_[-1(2.13e-13)]_\ 7 chrIX:336132-336656 2.40e-06 12_[+1(3.52e-08)]_5_[+2(1.85e-05)]_\ 23 chrXII:592062-593162 1.05e-07 28_[+2(1.27e-11)]_42 chrX:172672-172772 1.89e-03 60_[-3(8.45e-07)]_25 chrXVI:74741-76293 1.16e-01 100 chrXII:253731-255402 3.86e-01 100 chrXII:368373-370321 3.69e-01 100 chrXIII:145882-146201 1.59e-02 15_[-3(7.17e-06)]_70 chrIII:162074-164143 1.98e-02 35_[+3(8.02e-05)]_50 chrXIII:372159-372722 2.58e-08 11_[+1(3.26e-05)]_21_[+1(6.56e-12)]_\ 8 chrXIII:279843-280459 5.21e-01 100 chrXI:158185-159649 6.42e-02 36_[+3(2.17e-05)]_49 chrX:290827-290927 1.86e-01 100 chrXII:546023-547818 4.39e-01 100 chrVI:63896-65326 8.99e-01 100 chrV:461776-462155 5.77e-01 100 chrV:430897-431568 1.18e-01 100 chrXII:231367-234287 2.48e-01 100 chrX:606302-606402 1.73e-01 100 chrIV:359404-359873 5.70e-11 46_[-1(3.62e-10)]_8_[-3(2.30e-07)]_\ 1 chrIV:1359103-1359674 8.92e-01 100 chrVII:1048269-1049386 7.02e-01 100 chrVIII:504088-504650 1.91e-03 [+3(1.80e-07)]_85 chrXVI:303059-304412 9.73e-01 100 chrVII:828490-829199 4.95e-01 100 chrII:613732-614184 4.77e-01 100 chrXII:1064954-1065277 2.00e-01 100 chrXVI:214638-216034 9.32e-01 100 chrXV:841702-842988 2.48e-01 100 chrX:123430-123530 3.12e-01 100 chrX:424361-424461 9.17e-01 100 chrVII:1057072-1057885 1.85e-01 100 chrVII:609258-610092 4.57e-01 100 chrIV:1256907-1257312 8.13e-01 100 chrVI:4566-5410 5.98e-01 100 chrV:77519-79858 2.41e-01 100 chrIV:1012641-1013757 1.50e-01 100 chrX:354032-354132 5.27e-06 25_[-1(2.06e-09)]_45 chrXII:1002256-1002676 4.09e-01 100 chrVII:726904-728784 4.08e-01 100 chrXII:214611-215150 2.20e-10 32_[+3(4.74e-05)]_13_[+1(5.69e-13)]_\ 10 chrXII:1017664-1019356 6.30e-01 100 chrIX:68648-69847 8.34e-03 41_[+2(2.44e-05)]_29 chrIV:802463-802997 4.48e-10 34_[+3(5.18e-05)]_9_[+1(1.05e-12)]_\ 12 chrVIII:115274-116459 9.61e-01 100 chrVII:930699-931218 1.86e-12 24_[+3(2.72e-07)]_13_[+1(3.34e-12)]_\ 18 chrII:376251-378174 4.21e-01 100 chrII:226870-228281 6.47e-02 100 chrVI:136964-137818 9.98e-02 100 chrXIV:63219-64659 1.02e-01 45_[+1(9.77e-05)]_25 chrII:232292-234133 7.28e-01 100 chrXIII:57305-57735 4.83e-01 100 chrXV:759032-759751 9.02e-01 100 chrVII:661537-662431 7.35e-01 100 chrVI:19340-19886 8.96e-01 100 chrXVI:699993-700730 7.56e-04 24_[+3(7.43e-08)]_9_[-3(4.33e-05)]_\ 37 chrVII:794149-794760 1.14e-15 11_[-2(1.12e-10)]_6_[-1(5.69e-13)]_\ 23 chrII:256103-257170 6.34e-02 100 chrXIV:281980-283889 4.93e-01 100 chrXV:619250-624835 6.91e-01 100 chrX:390900-391000 4.19e-05 33_[+2(1.63e-08)]_37 chrXI:513207-514325 8.23e-01 100 chrVII:1049936-1050784 2.10e-03 9_[+3(4.72e-06)]_76 chrXII:648863-651241 5.71e-02 100 chrIV:1467287-1468513 5.89e-01 100 chrI:138653-139398 9.64e-01 100 chrXII:646052-646367 9.35e-01 100 chrVIII:34369-36213 3.80e-01 100 chrXIII:352099-352550 8.94e-11 4_[-2(7.29e-09)]_24_[-1(3.05e-09)]_\ 12 chrXIV:26883-27614 9.89e-01 100 chrII:544421-544933 9.32e-02 100 chrIII:28563-31611 2.83e-01 100 chrIX:388107-389134 1.03e-02 55_[-3(4.33e-05)]_30 chrXII:11101-11394 6.04e-01 100 chrXI:282785-285141 2.85e-01 100 chrXIV:215772-217036 7.47e-01 100 chrXVI:338687-339267 4.13e-01 100 chrVI:95527-95832 4.03e-02 100 chrXIV:567896-568935 4.27e-01 100 chrXII:516200-516798 3.72e-01 100 chrXV:832258-832853 5.32e-01 100 chrIV:884157-884694 8.12e-01 100 chrXII:97159-97931 8.92e-01 100 chrXV:966941-967786 7.17e-01 100 chrXV:723310-725699 6.94e-01 100 chrXIII:287459-287775 1.60e-02 28_[-3(1.13e-05)]_57 chrVII:438955-442071 6.34e-01 100 chrVII:1003983-1004415 5.77e-05 65_[-2(4.88e-08)]_5 chrXIV:96044-96658 4.18e-02 13_[-2(1.34e-05)]_57 chrXII:366022-366842 4.47e-02 100 chrXVI:406600-407932 5.72e-01 100 chrIV:218283-218831 4.19e-02 57_[+3(3.35e-05)]_28 chrIV:946159-946630 9.23e-06 18_[-1(2.06e-09)]_52 chrXIII:320974-321314 1.38e-09 37_[+3(9.76e-06)]_8_[+1(1.83e-10)]_\ 10 chrIV:601832-602700 1.57e-01 100 chrXIII:378636-379641 4.08e-01 100 chrV:117643-118283 5.14e-01 100 chrXVI:622018-622887 4.05e-01 100 chrIV:355066-357050 1.63e-01 100 chrII:504500-504864 3.32e-02 60_[+3(1.41e-05)]_25 chrXII:498295-499909 7.79e-01 100 chrV:491005-491525 5.77e-02 22_[+1(3.97e-05)]_48 chrXIII:625864-626898 7.63e-01 100 chrIV:1305378-1306400 4.09e-01 100 chrXV:32012-33756 1.67e-01 100 chrXIV:722950-723210 4.25e-01 100 chrIII:14442-16957 9.89e-01 100 chrXII:448182-449008 3.33e-02 48_[+3(8.61e-06)]_37 chrVII:554961-558196 7.67e-01 100 chrXV:216318-216524 8.91e-01 100 chrIV:1243055-1243327 9.10e-01 100 chrXIII:752459-754239 5.82e-01 100 chrIV:1150249-1151916 9.31e-01 100 chrV:138179-140788 1.14e-01 100 chrXIV:392261-392742 2.07e-02 15_[-3(1.41e-05)]_70 chrIV:1201393-1202787 6.63e-01 100 chrXI:83522-84418 4.89e-03 13_[-3(2.91e-05)]_72 chrXI:219559-220115 9.30e-01 100 chrXI:7766-8221 7.17e-01 100 chrII:591381-591823 8.14e-01 100 chrXI:589800-590478 4.34e-01 100 chrXIII:572680-573296 8.19e-01 100 chrIX:316702-318334 5.01e-01 100 chrX:413723-413823 6.17e-01 100 chrVII:73651-74265 5.98e-04 29_[-2(1.28e-06)]_41 chrIV:322153-323649 4.68e-03 30_[+3(6.76e-06)]_55 chrIV:416528-417137 1.55e-02 24_[+3(9.36e-05)]_37_[+3(2.74e-06)]_\ 9 chrXIV:546953-547412 4.75e-08 26_[-1(7.97e-11)]_44 chrIV:229702-230759 3.15e-01 100 chrVII:700085-701571 6.68e-01 100 chrXIII:761030-763176 4.68e-01 100 chrXIII:650140-653005 8.57e-01 100 chrX:440405-440505 9.80e-01 100 chrX:703356-703456 8.69e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************