******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--PHD1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:266157-266680 1.0000 100 chrVIII:132814-133380 1.0000 100 chrXIV:771877-772526 1.0000 100 chrVII:148166-149534 1.0000 100 chrXI:202814-203320 1.0000 100 chrI:141677-143639 1.0000 100 chrIV:1468775-1469163 1.0000 100 chrXVI:821669-822369 1.0000 100 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chrVII:319590-320149 1.0000 100 chrXVI:66946-67363 1.0000 100 chrVII:609283-610412 1.0000 100 chrV:77487-79481 1.0000 100 chrVII:205291-205922 1.0000 100 chrVII:533537-535229 1.0000 100 chrXIII:183756-184206 1.0000 100 chrXV:228044-228592 1.0000 100 chrVII:951370-951705 1.0000 100 chrXII:214642-215172 1.0000 100 chrXI:230464-231727 1.0000 100 chrVII:440496-443137 1.0000 100 chrXIII:572699-573309 1.0000 100 chrXV:288014-288533 1.0000 100 chrX:374210-374310 1.0000 100 chrXIII:586403-586915 1.0000 100 chrVIII:505781-506231 1.0000 100 chrXI:430471-431749 1.0000 100 chrXV:161064-162079 1.0000 100 chrXV:110839-111292 1.0000 100 chrXI:614149-614435 1.0000 100 chrXI:302647-303243 1.0000 100 chrVII:115241-115781 1.0000 100 chrIV:1488893-1490500 1.0000 100 chrV:490908-491577 1.0000 100 chrX:424266-424366 1.0000 100 chrXI:379443-379927 1.0000 100 chrII:135898-136433 1.0000 100 chrV:441758-442679 1.0000 100 chrXIII:434198-434568 1.0000 100 chrX:396556-396656 1.0000 100 chrVII:483262-483717 1.0000 100 chrVII:845315-845918 1.0000 100 chrIII:294971-295856 1.0000 100 chrVIII:237692-238313 1.0000 100 chrX:745013-745113 1.0000 100 chrII:476821-477781 1.0000 100 chrXV:281865-282480 1.0000 100 chrXII:780754-781905 1.0000 100 chrVIII:475488-475909 1.0000 100 chrIV:579007-580758 1.0000 100 chrIX:325488-326088 1.0000 100 chrXII:677837-678017 1.0000 100 chrIV:1233803-1233991 1.0000 100 chrXIV:716026-716637 1.0000 100 chrVII:1083250-1084372 1.0000 100 chrXII:759068-759359 1.0000 100 chrIV:541221-541920 1.0000 100 chrXII:498448-499693 1.0000 100 chrXII:712838-713628 1.0000 100 chrV:123207-123400 1.0000 100 chrIX:332676-333162 1.0000 100 chrXV:159269-160725 1.0000 100 chrXIV:102489-102979 1.0000 100 chrXV:709991-710494 1.0000 100 chrXIII:923218-924367 1.0000 100 chrIII:29574-31189 1.0000 100 chrI:180902-181495 1.0000 100 chrVIII:410994-411766 1.0000 100 chrIX:388164-388549 1.0000 100 chrIII:142154-142987 1.0000 100 chrII:392471-392833 1.0000 100 chrV:422759-425358 1.0000 100 chrXIII:419902-420883 1.0000 100 chrVIII:150726-151262 1.0000 100 chrX:293723-293823 1.0000 100 chrXII:962758-963385 1.0000 100 chrXI:45981-47011 1.0000 100 chrXIII:378897-379626 1.0000 100 chrIX:386565-386993 1.0000 100 chrIX:255066-258241 1.0000 100 chrXVI:502454-503246 1.0000 100 chrXIV:96043-96632 1.0000 100 chrXV:976175-976893 1.0000 100 chrXV:876786-878001 1.0000 100 chrVII:544396-546091 1.0000 100 chrVI:180663-181254 1.0000 100 chrII:504493-504911 1.0000 100 chrXV:866483-868118 1.0000 100 chrX:204467-204567 1.0000 100 chrXIII:431696-432125 1.0000 100 chrVIII:451259-453099 1.0000 100 chrXIV:209890-210239 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--PHD1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--PHD1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--PHD1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.288 C 0.212 G 0.212 T 0.288 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--PHD1/background): A 0.305 C 0.195 G 0.195 T 0.305 ******************************************************************************** ******************************************************************************** MOTIF VDRAGRTCMBSGGTTCGAKYCCSVKH MEME-1 width = 26 sites = 96 llr = 1748 E-value = 8.5e-359 ******************************************************************************** -------------------------------------------------------------------------------- Motif VDRAGRTCMBSGGTTCGAKYCCSVKH MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3357152:4:12::::3a1::::3:3 pos.-specific C 211:1:17533::::a::25a85414 probability G 354375::1458a:::8:2:::445: matrix T 221:::73131::aa:::45:21:43 bits 2.4 * * 2.1 * * * 1.9 * * * 1.7 **** * * Relative 1.4 ****** * Entropy 1.2 * * ******* ** (26.3 bits) 0.9 ** * ******* **** 0.7 ***** ******** ***** 0.5 **************** ******* 0.2 ************************** 0.0 -------------------------- Multilevel GGAAGGTCCGGGGTTCGATTCCCCGC consensus AAGG A TACC A GC TGGTT sequence T T C A A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VDRAGRTCMBSGGTTCGAKYCCSVKH MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------- chrIII:123392-123854 - 11 9.12e-16 CTTAGGGTGC GGGAGGTCCCGGGTTCGAGTCCCGGC TCGCCCCACA chrXII:734699-735075 + 6 6.30e-12 TAACG CGGGGATCAGCGGTTCGATCCCGCTA GAGACCATTT chrXVI:880094-880585 - 14 6.30e-12 GCTAATAACG CGGGGATCAGCGGTTCGATCCCGCTA GAGACCATTT chrV:551032-551592 - 30 6.30e-12 GCTAATAACG CGGGGATCAGCGGTTCGATCCCGCTA GAGACCAATT chrIX:210509-210982 + 11 6.30e-12 GCTAATAACG CGGGGATCAGCGGTTCGATCCCGCTA GAGACCATAT chrXIV:569681-570145 - 11 6.30e-12 GCTAATAACG CGGGGATCAGCGGTTCGATCCCGCTA GAGACCATTC chrXVI:819314-819871 + 28 6.30e-12 GCTAATAACG CGGGGATCAGCGGTTCGATCCCGCTA GAGACCATTT chrII:197211-197889 + 35 6.30e-12 GCTAATAACG CGGGGATCAGCGGTTCGATCCCGCTA GAGACCATTT chrIV:667742-668260 - 63 6.30e-12 GCTAATAACG CGGGGATCAGCGGTTCGATCCCGCTA GAGACCATTT chrXII:214642-215172 - 33 3.90e-11 CCTTGCAAGG AAGAGGTCATCGGTTCGATTCCGGTT GCGTCCATTT chrI:166035-166608 + 36 3.90e-11 CCTTGCAAGG AAGAGGTCATCGGTTCGATTCCGGTT GCGTCCAAAT chrXV:853996-854454 - 19 3.90e-11 CCTTGCAAGG AAGAGGTCATCGGTTCGATTCCGGTT GCGTCCAATT chrVI:226411-226969 - 55 4.54e-11 ACTCTTAATC ATAAGGTTAGGGGTTCGAGCCCCCTA CAGGGCTTAT chrIX:299997-300525 - 24 4.54e-11 ACTCTTAATC ATAAGGTTAGGGGTTCGAGCCCCCTA CAGGGCTATC chrVII:185491-186032 - 10 4.54e-11 ACTCTTAATC ATAAGGTTAGGGGTTCGAGCCCCCTA CAGGGCTAT chrV:135151-135717 - 48 4.54e-11 ACTCTTAATC ATAAGGTTAGGGGTTCGAGCCCCCTA CAGGGCTTTC chrV:435563-436040 - 8 4.54e-11 ACTCTTAATC ATAAGGTTAGGGGTTCGAGCCCCCTA CAGGGCT chrX:414763-414863 + 43 4.54e-11 ACTCTTAATC ATAAGGTTAGGGGTTCGAGCCCCCTA CAGGGCTAAT chrVII:122032-122548 + 69 4.54e-11 ACTCTTAATC ATAAGGTTAGGGGTTCGAGCCCCCTA CAGGGC chrIV:1352262-1352751 - 17 4.54e-11 ACTCTTAATC ATAAGGTTAGGGGTTCGAGCCCCCTA CAGGGCTATC chrIV:1201488-1202098 + 47 4.54e-11 ACTCTTAATC ATAAGGTTAGGGGTTCGAGCCCCCTA CAGGGCTAAT chrXI:202814-203320 + 22 4.54e-11 ACTCTTAATC ATAAGGTTAGGGGTTCGAGCCCCCTA CAGGGCTTTC chrIX:197328-197976 + 29 6.11e-11 CGTTCTCACC GTGGAGACCGGGGTTCGACTCCCCGC TTCGGAGTTA chrIV:1016936-1017521 - 36 6.11e-11 CGTTCTCACC GTGGAGACCGGGGTTCGACTCCCCGC TTCGGAGTTT chrX:374210-374310 - 23 8.16e-11 ACTTCTAATC AGAAGATTATGGGTTCGACCCCCATC GTGAGTGCTT chrVII:828482-829006 - 36 8.16e-11 ACTTCTAATC AGAAGATTATGGGTTCGACCCCCATC GTGAGTGCTT chrX:355117-355217 + 30 8.16e-11 ACTTCTAATC AGAAGATTATGGGTTCGACCCCCATC GTGAGTGCTT chrXIII:131509-132125 - 65 8.16e-11 ACTTCTAATC AGAAGATTATGGGTTCGACCCCCATC GTGAGTGCTT chrIV:568521-569273 + 74 8.16e-11 ACTTCTAATC AGAAGATTATGGGTTCGACCCCCATC G chrII:405557-406290 + 44 8.16e-11 ACTTCTAATC AGAAGATTATGGGTTCGACCCCCATC GTGAGTGCTT chrVII:405283-405738 + 49 8.16e-11 ACTTCTAATC AGAAGATTATGGGTTCGACCCCCATC GTGAGTGCTT chrVIII:388642-389218 - 20 1.24e-10 CAAAGCATGC GAGAGGCCCTGGGTTCAATTCCCAGC TCGCCCCATT chrXV:980468-981047 + 48 1.24e-10 CAAAGCATGC GAGAGGCCCTGGGTTCAATTCCCAGC TCGCCCCTTT chrXIV:546940-547412 + 38 1.24e-10 CAAAGCATGC GAGAGGCCCTGGGTTCAATTCCCAGC TCGCCCCGTT chrXIV:567891-568486 + 47 1.24e-10 CAAAGCATGC GAGAGGCCCTGGGTTCAATTCCCAGC TCGCCCCTTT chrII:644940-645438 + 67 1.42e-10 CGCTTTCACC GTGGAGACCGGGGTTCGACTCCCCGT ATCGGAGT chrXVI:209958-210516 - 12 1.42e-10 CGCTTTCACC GTGGAGACCGGGGTTCGACTCCCCGT ATCGGAGTTT chrV:487080-487639 - 29 1.42e-10 CGCTTTCACC GTGGAGACCGGGGTTCGACTCCCCGT ATCGGAGTAT chrIX:370216-370719 + 39 1.42e-10 CGCTTTCACC GTGGAGACCGGGGTTCGACTCCCCGT ATCGGAGTAT chrVI:180663-181254 - 73 1.63e-10 TC GTTGGGCCCCCGGTTCGATTCCGGGC TTGCGCAGTC chrVIII:475488-475909 - 65 1.63e-10 CTTCACACGG CAAAGGTCCCGAGTTCGATCCTCGGT TGGAACATTT chrXVI:571977-572589 + 74 1.63e-10 CGTTGCCATC GTTGGGCCCCCGGTTCGATTCCGGGC T chrVI:162001-162494 + 69 1.63e-10 CGTTGCCATC GTTGGGCCCCCGGTTCGATTCCGGGC TTGCGC chrIV:1075246-1075781 - 16 1.63e-10 CTTCACACGG CAAAGGTCCCGAGTTCGATCCTCGGT TGGAACATTT chrXVI:768978-769521 - 15 2.75e-10 CAAGGATACC GAAATGTCAGGGGTTCGAGCCCCCTA TGAGGAGTTC chrXV:438418-439040 + 27 2.75e-10 CAAGGATACC GAAATGTCAGGGGTTCGAGCCCCCTA TGAGGAGTTC chrXI:578758-579299 + 50 2.75e-10 CAAGGATACC GAAATGTCAGGGGTTCGAGCCCCCTA TGAGGAGTTC chrIV:488457-489203 - 24 3.54e-10 CTTTACACGG CGAAGATCCCGAGTTCGAACCTCGGT TGGATCAGAA chrXIII:586403-586915 - 34 4.53e-10 CTTAACACGC AGAACGTCCCCAGTTCGATCCTGGGC GAAATCATTT chrXIII:372191-372739 - 37 4.53e-10 CTTAACACGC AGAACGTCCCCAGTTCGATCCTGGGC GAAATCATTT chrVII:412100-412598 - 2 4.53e-10 CTTAACACGC AGAACGTCCCCAGTTCGATCCTGGGC G chrXV:663490-664140 - 54 4.53e-10 CTTAACACGC AGAACGTCCCCAGTTCGATCCTGGGC GAAATCGTTT chrVIII:85056-85559 - 48 4.53e-10 CTTAACACGC AGAACGTCCCCAGTTCGATCCTGGGC GAAATCAATT chrIV:802540-803027 - 5 6.49e-10 GGTTTTGATC CGGACAACCCCGGTTCGAATCCGGGT AGGA chrXII:448278-448991 - 73 6.49e-10 TC CGGACAACCCCGGTTCGAATCCGGGT AGGACCTTCT chrII:350569-351129 + 67 6.49e-10 GGTTTTGATC CGGACAACCCCGGTTCGAATCCGGGT AAGACCTT chrXII:656711-657193 - 39 9.19e-10 CTTAGCATGG GAGAGGTCTCCGGTTCGATTCCGGAC TCGTCCAAGT chrX:233686-233786 + 60 9.19e-10 GCTACGAACC AGGAGATTCCAGGTTCGAGTCCTGGC GGGGAAGAAT chrIV:410159-410703 + 38 9.19e-10 CTTAGCATGG GAGAGGTCTCCGGTTCGATTCCGGAC TCGTCCAAAT chrV:130842-131431 - 3 9.19e-10 GGTTTTGATC CGAACAACCCCGGTTCGAATCCGGGT AA chrX:538327-538427 + 28 9.19e-10 CCTCCTAAGG AGAAGACTGCGGGTTCGAGTCCCGTA CGGAACGTTG chrVII:774096-774688 + 47 9.19e-10 CTTAGCATGG GAGAGGTCTCCGGTTCGATTCCGGAC TCGTCCAAAT chrIX:325488-326088 + 50 2.45e-09 ACTAGTAATG TGGAGATCATCGGTTCAAATCCGATT GGAAGCAATT chrIV:434012-434574 - 28 2.45e-09 ACTAGTAATG TGGAGATCATCGGTTCAAATCCGATT GGAAGCATAT chrXIV:104557-105133 + 50 2.45e-09 ACTAGTAATG TGGAGATCATCGGTTCAAATCCGATT GGAAGCATAT chrII:266157-266680 + 50 2.45e-09 ACTAGTAATG TGGAGATCATCGGTTCAAATCCGATT GGAAGCATTT chrXI:490724-491335 + 29 5.47e-09 GCTACGAACC AGAAGATTCCAGGTTCAAGTCCTGGC GGGGAAGAAT chrIV:619687-620261 - 52 5.47e-09 GCTACGAACC AGAAGATTCCAGGTTCAAGTCCTGGC GGGGAAGATT chrV:492184-492574 - 30 5.47e-09 GCTACGAACC AGAAGATTCCAGGTTCAAGTCCTGGC GGGGAAGGAT chrXII:374198-374639 + 27 5.47e-09 GCTACGAACC AGAAGATTCCAGGTTCAAGTCCTGGC GGGGAAGATT chrXVI:55848-56531 - 37 3.19e-08 GATTGCAATC GAAGGGTTGCAGGTTCAATTCCTGTC CGTTTCAATT chrXV:288014-288533 + 25 4.73e-08 CTACGAAATC TTGAGATCGGGCGTTCGACTCGCCCC CGGGAGATAT chrIV:946131-946621 + 42 4.73e-08 CTACGAAATC TTGAGATCGGGCGTTCGACTCGCCCC CGGGAGATTT chrXIII:837701-838274 + 47 4.73e-08 CTACGAAATC TTGAGATCGGGCGTTCGACTCGCCCC CGGGAGATAT chrIV:1095130-1095686 - 19 5.95e-08 TCAAGATATC TGGAGGTCCTGTGTTCGATCCACAGA GTTCGCATTT chrX:541302-541402 + 57 6.41e-08 GCTTGTCGCG TGCCAGATCGGGGTTCAATTCCCCGT CGCGGAGATT chrIX:323963-324634 - 62 6.41e-08 GCTTGTCGCG TGCCAGATCGGGGTTCAATTCCCCGT CGCGGAGATT chrXII:426884-427430 + 64 6.41e-08 GCTTGTCGCG TGCCAGATCGGGGTTCAATTCCCCGT CGCGGAGAAT chrX:422630-422730 + 61 6.41e-08 TCTCATAATC TGAAGGTCGAGAGTTCGAACCTCCCC TGGAGCACAT chrIX:336103-336655 - 27 6.41e-08 GCTTGTCGCG TGCCAGATCGGGGTTCAATTCCCCGT CGCGGAGATT chrXIV:102489-102979 + 73 8.60e-08 ACTGTTAATC GCAAGATCGTGAGTTCAACCCTCACT GG chrVII:730922-731418 + 58 8.60e-08 ACTGTTAATC GCAAGATCGTGAGTTCAACCCTCACT GGGGTCGTTT chrXI:74362-74986 + 41 8.60e-08 ACTGTTAATC GCAAGATCGTGAGTTCAACCCTCACT GGGGTCGCTT chrXIV:632373-632911 + 48 8.60e-08 ACTGTTAATC GCAAGATCGTGAGTTCAACCCTCACT GGGGTCGTTT chrII:347377-347897 - 73 1.07e-07 CT GAAGGATGCGAGGTTCGAACTCGCGC GGACAACCGT chrII:9361-9890 - 65 1.07e-07 AAAAAATACT GAAGGATGCGAGGTTCGAACTCGCGC GGACAACCGT chrVIII:466738-467311 + 55 1.14e-07 ACTTGTAATG CAAAGGTCGCTAGTTCAATTCTGGCA GGTGGCATTA chrXVI:435627-436217 - 28 2.54e-07 ATTGCAAATC TGTTGGTCCTTAGTTCGATCCTGAGT GCGAGCTTTC chrXVI:775448-776193 - 2 2.54e-07 ATTGCAAATC TGTTGGTCCTTAGTTCGATCCTGAGT G chrXVI:743951-744666 + 65 2.71e-07 ACTTGTAATG CAAAGGTCGTTAGTTCAATTCTGACA GGTGGCAAAA chrXV:709991-710494 + 48 3.92e-07 GCTCATAACC CTGATGTCCTCGGATCGAAACCGAGC GGCGCTAATT chrXI:313169-313699 - 24 4.96e-07 CGTTGTGGCC GATGAAACCCTGGTTCGATTCTAGGA GATGGCATTT chrV:434393-434772 - 16 4.96e-07 CGTTGTGGCC GATGAAACCCTGGTTCGATTCTAGGA GATGGCATTT chrVII:110297-110934 - 67 4.96e-07 TTGTGGCC GATGAAACCCTGGTTCGATTCTAGGA GATGGCAATT chrVIII:379533-379889 - 67 6.98e-07 TACCATTT GAGGGATCTGAAGATCAAGTCCGCCT TAAGGGTGCA chrVII:483262-483717 + 43 9.18e-07 GGTAATTATC GCCGGATCTCCGCTTCGAGACCGGGT TTGTTTTCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VDRAGRTCMBSGGTTCGAKYCCSVKH MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123392-123854 9.1e-16 10_[-1]_64 chrXII:734699-735075 6.3e-12 5_[+1]_69 chrXVI:880094-880585 6.3e-12 13_[-1]_61 chrV:551032-551592 6.3e-12 29_[-1]_45 chrIX:210509-210982 6.3e-12 10_[+1]_64 chrXIV:569681-570145 6.3e-12 10_[-1]_64 chrXVI:819314-819871 6.3e-12 27_[+1]_47 chrII:197211-197889 6.3e-12 34_[+1]_40 chrIV:667742-668260 6.3e-12 62_[-1]_12 chrXII:214642-215172 3.9e-11 32_[-1]_42 chrI:166035-166608 3.9e-11 35_[+1]_39 chrXV:853996-854454 3.9e-11 18_[-1]_56 chrVI:226411-226969 4.5e-11 54_[-1]_20 chrIX:299997-300525 4.5e-11 23_[-1]_51 chrVII:185491-186032 4.5e-11 9_[-1]_65 chrV:135151-135717 4.5e-11 47_[-1]_27 chrV:435563-436040 4.5e-11 7_[-1]_67 chrX:414763-414863 4.5e-11 42_[+1]_32 chrVII:122032-122548 4.5e-11 68_[+1]_6 chrIV:1352262-1352751 4.5e-11 16_[-1]_58 chrIV:1201488-1202098 4.5e-11 46_[+1]_28 chrXI:202814-203320 4.5e-11 21_[+1]_53 chrIX:197328-197976 6.1e-11 28_[+1]_46 chrIV:1016936-1017521 6.1e-11 35_[-1]_39 chrX:374210-374310 8.2e-11 22_[-1]_52 chrVII:828482-829006 8.2e-11 35_[-1]_39 chrX:355117-355217 8.2e-11 29_[+1]_45 chrXIII:131509-132125 8.2e-11 64_[-1]_10 chrIV:568521-569273 8.2e-11 73_[+1]_1 chrII:405557-406290 8.2e-11 43_[+1]_31 chrVII:405283-405738 8.2e-11 48_[+1]_26 chrVIII:388642-389218 1.2e-10 19_[-1]_55 chrXV:980468-981047 1.2e-10 47_[+1]_27 chrXIV:546940-547412 1.2e-10 37_[+1]_37 chrXIV:567891-568486 1.2e-10 46_[+1]_28 chrII:644940-645438 1.4e-10 66_[+1]_8 chrXVI:209958-210516 1.4e-10 11_[-1]_63 chrV:487080-487639 1.4e-10 28_[-1]_46 chrIX:370216-370719 1.4e-10 38_[+1]_36 chrVI:180663-181254 1.6e-10 72_[-1]_2 chrVIII:475488-475909 1.6e-10 64_[-1]_10 chrXVI:571977-572589 1.6e-10 73_[+1]_1 chrVI:162001-162494 1.6e-10 68_[+1]_6 chrIV:1075246-1075781 1.6e-10 15_[-1]_59 chrXVI:768978-769521 2.7e-10 14_[-1]_60 chrXV:438418-439040 2.7e-10 26_[+1]_48 chrXI:578758-579299 2.7e-10 49_[+1]_25 chrIV:488457-489203 3.5e-10 23_[-1]_51 chrXIII:586403-586915 4.5e-10 33_[-1]_41 chrXIII:372191-372739 4.5e-10 36_[-1]_38 chrVII:412100-412598 4.5e-10 1_[-1]_73 chrXV:663490-664140 4.5e-10 53_[-1]_21 chrVIII:85056-85559 4.5e-10 47_[-1]_27 chrIV:802540-803027 6.5e-10 4_[-1]_70 chrXII:448278-448991 6.5e-10 72_[-1]_2 chrII:350569-351129 6.5e-10 66_[+1]_8 chrXII:656711-657193 9.2e-10 38_[-1]_36 chrX:233686-233786 9.2e-10 59_[+1]_15 chrIV:410159-410703 9.2e-10 37_[+1]_37 chrV:130842-131431 9.2e-10 2_[-1]_72 chrX:538327-538427 9.2e-10 27_[+1]_47 chrVII:774096-774688 9.2e-10 46_[+1]_28 chrIX:325488-326088 2.5e-09 49_[+1]_25 chrIV:434012-434574 2.5e-09 27_[-1]_47 chrXIV:104557-105133 2.5e-09 49_[+1]_25 chrII:266157-266680 2.5e-09 49_[+1]_25 chrXI:490724-491335 5.5e-09 28_[+1]_46 chrIV:619687-620261 5.5e-09 51_[-1]_23 chrV:492184-492574 5.5e-09 29_[-1]_45 chrXII:374198-374639 5.5e-09 26_[+1]_48 chrXVI:55848-56531 3.2e-08 36_[-1]_38 chrXV:288014-288533 4.7e-08 24_[+1]_50 chrIV:946131-946621 4.7e-08 41_[+1]_33 chrXIII:837701-838274 4.7e-08 46_[+1]_28 chrIV:1095130-1095686 5.9e-08 18_[-1]_56 chrX:541302-541402 6.4e-08 56_[+1]_18 chrIX:323963-324634 6.4e-08 61_[-1]_13 chrXII:426884-427430 6.4e-08 63_[+1]_11 chrX:422630-422730 6.4e-08 60_[+1]_14 chrIX:336103-336655 6.4e-08 26_[-1]_48 chrXIV:102489-102979 8.6e-08 72_[+1]_2 chrVII:730922-731418 8.6e-08 57_[+1]_17 chrXI:74362-74986 8.6e-08 40_[+1]_34 chrXIV:632373-632911 8.6e-08 47_[+1]_27 chrII:347377-347897 1.1e-07 72_[-1]_2 chrII:9361-9890 1.1e-07 64_[-1]_10 chrVIII:466738-467311 1.1e-07 54_[+1]_20 chrXVI:435627-436217 2.5e-07 27_[-1]_47 chrXVI:775448-776193 2.5e-07 1_[-1]_73 chrXVI:743951-744666 2.7e-07 64_[+1]_10 chrXV:709991-710494 3.9e-07 47_[+1]_27 chrXI:313169-313699 5e-07 23_[-1]_51 chrV:434393-434772 5e-07 15_[-1]_59 chrVII:110297-110934 5e-07 66_[-1]_8 chrVIII:379533-379889 7e-07 66_[-1]_8 chrVII:483262-483717 9.2e-07 42_[+1]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VDRAGRTCMBSGGTTCGAKYCCSVKH MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VDRAGRTCMBSGGTTCGAKYCCSVKH width=26 seqs=96 chrIII:123392-123854 ( 11) GGGAGGTCCCGGGTTCGAGTCCCGGC 1 chrXII:734699-735075 ( 6) CGGGGATCAGCGGTTCGATCCCGCTA 1 chrXVI:880094-880585 ( 14) CGGGGATCAGCGGTTCGATCCCGCTA 1 chrV:551032-551592 ( 30) CGGGGATCAGCGGTTCGATCCCGCTA 1 chrIX:210509-210982 ( 11) CGGGGATCAGCGGTTCGATCCCGCTA 1 chrXIV:569681-570145 ( 11) CGGGGATCAGCGGTTCGATCCCGCTA 1 chrXVI:819314-819871 ( 28) CGGGGATCAGCGGTTCGATCCCGCTA 1 chrII:197211-197889 ( 35) CGGGGATCAGCGGTTCGATCCCGCTA 1 chrIV:667742-668260 ( 63) CGGGGATCAGCGGTTCGATCCCGCTA 1 chrXII:214642-215172 ( 33) AAGAGGTCATCGGTTCGATTCCGGTT 1 chrI:166035-166608 ( 36) AAGAGGTCATCGGTTCGATTCCGGTT 1 chrXV:853996-854454 ( 19) AAGAGGTCATCGGTTCGATTCCGGTT 1 chrVI:226411-226969 ( 55) ATAAGGTTAGGGGTTCGAGCCCCCTA 1 chrIX:299997-300525 ( 24) ATAAGGTTAGGGGTTCGAGCCCCCTA 1 chrVII:185491-186032 ( 10) ATAAGGTTAGGGGTTCGAGCCCCCTA 1 chrV:135151-135717 ( 48) ATAAGGTTAGGGGTTCGAGCCCCCTA 1 chrV:435563-436040 ( 8) ATAAGGTTAGGGGTTCGAGCCCCCTA 1 chrX:414763-414863 ( 43) ATAAGGTTAGGGGTTCGAGCCCCCTA 1 chrVII:122032-122548 ( 69) ATAAGGTTAGGGGTTCGAGCCCCCTA 1 chrIV:1352262-1352751 ( 17) ATAAGGTTAGGGGTTCGAGCCCCCTA 1 chrIV:1201488-1202098 ( 47) ATAAGGTTAGGGGTTCGAGCCCCCTA 1 chrXI:202814-203320 ( 22) ATAAGGTTAGGGGTTCGAGCCCCCTA 1 chrIX:197328-197976 ( 29) GTGGAGACCGGGGTTCGACTCCCCGC 1 chrIV:1016936-1017521 ( 36) GTGGAGACCGGGGTTCGACTCCCCGC 1 chrX:374210-374310 ( 23) AGAAGATTATGGGTTCGACCCCCATC 1 chrVII:828482-829006 ( 36) AGAAGATTATGGGTTCGACCCCCATC 1 chrX:355117-355217 ( 30) AGAAGATTATGGGTTCGACCCCCATC 1 chrXIII:131509-132125 ( 65) AGAAGATTATGGGTTCGACCCCCATC 1 chrIV:568521-569273 ( 74) AGAAGATTATGGGTTCGACCCCCATC 1 chrII:405557-406290 ( 44) AGAAGATTATGGGTTCGACCCCCATC 1 chrVII:405283-405738 ( 49) AGAAGATTATGGGTTCGACCCCCATC 1 chrVIII:388642-389218 ( 20) GAGAGGCCCTGGGTTCAATTCCCAGC 1 chrXV:980468-981047 ( 48) GAGAGGCCCTGGGTTCAATTCCCAGC 1 chrXIV:546940-547412 ( 38) GAGAGGCCCTGGGTTCAATTCCCAGC 1 chrXIV:567891-568486 ( 47) GAGAGGCCCTGGGTTCAATTCCCAGC 1 chrII:644940-645438 ( 67) GTGGAGACCGGGGTTCGACTCCCCGT 1 chrXVI:209958-210516 ( 12) GTGGAGACCGGGGTTCGACTCCCCGT 1 chrV:487080-487639 ( 29) GTGGAGACCGGGGTTCGACTCCCCGT 1 chrIX:370216-370719 ( 39) GTGGAGACCGGGGTTCGACTCCCCGT 1 chrVI:180663-181254 ( 73) GTTGGGCCCCCGGTTCGATTCCGGGC 1 chrVIII:475488-475909 ( 65) CAAAGGTCCCGAGTTCGATCCTCGGT 1 chrXVI:571977-572589 ( 74) GTTGGGCCCCCGGTTCGATTCCGGGC 1 chrVI:162001-162494 ( 69) GTTGGGCCCCCGGTTCGATTCCGGGC 1 chrIV:1075246-1075781 ( 16) CAAAGGTCCCGAGTTCGATCCTCGGT 1 chrXVI:768978-769521 ( 15) GAAATGTCAGGGGTTCGAGCCCCCTA 1 chrXV:438418-439040 ( 27) GAAATGTCAGGGGTTCGAGCCCCCTA 1 chrXI:578758-579299 ( 50) GAAATGTCAGGGGTTCGAGCCCCCTA 1 chrIV:488457-489203 ( 24) CGAAGATCCCGAGTTCGAACCTCGGT 1 chrXIII:586403-586915 ( 34) AGAACGTCCCCAGTTCGATCCTGGGC 1 chrXIII:372191-372739 ( 37) AGAACGTCCCCAGTTCGATCCTGGGC 1 chrVII:412100-412598 ( 2) AGAACGTCCCCAGTTCGATCCTGGGC 1 chrXV:663490-664140 ( 54) AGAACGTCCCCAGTTCGATCCTGGGC 1 chrVIII:85056-85559 ( 48) AGAACGTCCCCAGTTCGATCCTGGGC 1 chrIV:802540-803027 ( 5) CGGACAACCCCGGTTCGAATCCGGGT 1 chrXII:448278-448991 ( 73) CGGACAACCCCGGTTCGAATCCGGGT 1 chrII:350569-351129 ( 67) CGGACAACCCCGGTTCGAATCCGGGT 1 chrXII:656711-657193 ( 39) GAGAGGTCTCCGGTTCGATTCCGGAC 1 chrX:233686-233786 ( 60) AGGAGATTCCAGGTTCGAGTCCTGGC 1 chrIV:410159-410703 ( 38) GAGAGGTCTCCGGTTCGATTCCGGAC 1 chrV:130842-131431 ( 3) CGAACAACCCCGGTTCGAATCCGGGT 1 chrX:538327-538427 ( 28) AGAAGACTGCGGGTTCGAGTCCCGTA 1 chrVII:774096-774688 ( 47) GAGAGGTCTCCGGTTCGATTCCGGAC 1 chrIX:325488-326088 ( 50) TGGAGATCATCGGTTCAAATCCGATT 1 chrIV:434012-434574 ( 28) TGGAGATCATCGGTTCAAATCCGATT 1 chrXIV:104557-105133 ( 50) TGGAGATCATCGGTTCAAATCCGATT 1 chrII:266157-266680 ( 50) TGGAGATCATCGGTTCAAATCCGATT 1 chrXI:490724-491335 ( 29) AGAAGATTCCAGGTTCAAGTCCTGGC 1 chrIV:619687-620261 ( 52) AGAAGATTCCAGGTTCAAGTCCTGGC 1 chrV:492184-492574 ( 30) AGAAGATTCCAGGTTCAAGTCCTGGC 1 chrXII:374198-374639 ( 27) AGAAGATTCCAGGTTCAAGTCCTGGC 1 chrXVI:55848-56531 ( 37) GAAGGGTTGCAGGTTCAATTCCTGTC 1 chrXV:288014-288533 ( 25) TTGAGATCGGGCGTTCGACTCGCCCC 1 chrIV:946131-946621 ( 42) TTGAGATCGGGCGTTCGACTCGCCCC 1 chrXIII:837701-838274 ( 47) TTGAGATCGGGCGTTCGACTCGCCCC 1 chrIV:1095130-1095686 ( 19) TGGAGGTCCTGTGTTCGATCCACAGA 1 chrX:541302-541402 ( 57) TGCCAGATCGGGGTTCAATTCCCCGT 1 chrIX:323963-324634 ( 62) TGCCAGATCGGGGTTCAATTCCCCGT 1 chrXII:426884-427430 ( 64) TGCCAGATCGGGGTTCAATTCCCCGT 1 chrX:422630-422730 ( 61) TGAAGGTCGAGAGTTCGAACCTCCCC 1 chrIX:336103-336655 ( 27) TGCCAGATCGGGGTTCAATTCCCCGT 1 chrXIV:102489-102979 ( 73) GCAAGATCGTGAGTTCAACCCTCACT 1 chrVII:730922-731418 ( 58) GCAAGATCGTGAGTTCAACCCTCACT 1 chrXI:74362-74986 ( 41) GCAAGATCGTGAGTTCAACCCTCACT 1 chrXIV:632373-632911 ( 48) GCAAGATCGTGAGTTCAACCCTCACT 1 chrII:347377-347897 ( 73) GAAGGATGCGAGGTTCGAACTCGCGC 1 chrII:9361-9890 ( 65) GAAGGATGCGAGGTTCGAACTCGCGC 1 chrVIII:466738-467311 ( 55) CAAAGGTCGCTAGTTCAATTCTGGCA 1 chrXVI:435627-436217 ( 28) TGTTGGTCCTTAGTTCGATCCTGAGT 1 chrXVI:775448-776193 ( 2) TGTTGGTCCTTAGTTCGATCCTGAGT 1 chrXVI:743951-744666 ( 65) CAAAGGTCGTTAGTTCAATTCTGACA 1 chrXV:709991-710494 ( 48) CTGATGTCCTCGGATCGAAACCGAGC 1 chrXI:313169-313699 ( 24) GATGAAACCCTGGTTCGATTCTAGGA 1 chrV:434393-434772 ( 16) GATGAAACCCTGGTTCGATTCTAGGA 1 chrVII:110297-110934 ( 67) GATGAAACCCTGGTTCGATTCTAGGA 1 chrVIII:379533-379889 ( 67) GAGGGATCTGAAGATCAAGTCCGCCT 1 chrVII:483262-483717 ( 43) GCCGGATCTCCGCTTCGAGACCGGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VDRAGRTCMBSGGTTCGAKYCCSVKH MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 26 n= 45000 bayes= 10.7787 E= 8.5e-359 8 -6 77 -96 -29 -190 123 -35 59 -190 106 -187 115 -223 42 -387 -117 -106 190 -287 59 -1323 147 -1323 -78 -123 -1323 128 -1323 182 -323 -6 26 123 -64 -255 -487 73 98 -12 -170 77 136 -206 -70 -264 198 -487 -1323 -422 234 -1323 -387 -1323 -1323 168 -1323 -1323 -1323 171 -1323 236 -1323 -1323 -29 -1323 194 -1323 171 -1323 -1323 -1323 -117 9 23 49 -387 130 -1323 71 -1323 233 -1323 -387 -487 194 -264 -55 -329 136 106 -229 -29 102 86 -1323 -329 -77 126 34 -6 102 -1323 4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VDRAGRTCMBSGGTTCGAKYCCSVKH MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 26 nsites= 96 E= 8.5e-359 0.322917 0.187500 0.333333 0.156250 0.250000 0.052083 0.458333 0.239583 0.458333 0.052083 0.406250 0.083333 0.677083 0.041667 0.260417 0.020833 0.135417 0.093750 0.729167 0.041667 0.458333 0.000000 0.541667 0.000000 0.177083 0.083333 0.000000 0.739583 0.000000 0.687500 0.020833 0.291667 0.364583 0.458333 0.125000 0.052083 0.010417 0.322917 0.385417 0.281250 0.093750 0.333333 0.500000 0.072917 0.187500 0.031250 0.770833 0.010417 0.000000 0.010417 0.989583 0.000000 0.020833 0.000000 0.000000 0.979167 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.135417 0.208333 0.229167 0.427083 0.020833 0.479167 0.000000 0.500000 0.000000 0.979167 0.000000 0.020833 0.010417 0.750000 0.031250 0.208333 0.031250 0.500000 0.406250 0.062500 0.250000 0.395833 0.354167 0.000000 0.031250 0.114583 0.468750 0.385417 0.291667 0.395833 0.000000 0.312500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VDRAGRTCMBSGGTTCGAKYCCSVKH MEME-1 regular expression -------------------------------------------------------------------------------- [GA][GAT][AG][AG]G[GA]T[CT][CA][GCT][GC]GGTTC[GA]A[TGC][TC]C[CT][CG][CGA][GT][CTA] -------------------------------------------------------------------------------- Time 352.81 secs. ******************************************************************************** ******************************************************************************** MOTIF GSBYNBDTGGYBYAGTKGKWWRRGSSNHS MEME-2 width = 29 sites = 125 llr = 1929 E-value = 8.1e-347 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSBYNBDTGGYBYAGTKGKWWRRGSSNHS MEME-2 Description -------------------------------------------------------------------------------- Simplified A :111213:3:::1a2::::36551::232 pos.-specific C :53423::::653::12::2:12144334 probability G 9432324:7a:22:8:5a5:133644212 matrix T 1:33333a::434::93:55311222331 bits 2.4 * * 2.1 * * 1.9 * * 1.7 * * * * * Relative 1.4 * *** ** * Entropy 1.2 * **** *** * (22.3 bits) 0.9 * **** *** * 0.7 ** **** ****** * 0.5 ** ****** ****** ** *** 0.2 **** ********************* * 0.0 ----------------------------- Multilevel GCTCTCGTGGCCTAGTGGTTAAAGCGTTC consensus GCTGTT A TTC T GATGG GCCCG sequence G CGA G AAA G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNBDTGGYBYAGTKGKWWRRGSSNHS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrVI:204739-205234 - 32 5.81e-12 ACAAACGTTC GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrXVI:880094-880585 - 52 5.81e-12 ACAATATAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrV:551032-551592 - 68 5.81e-12 TACA GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrX:197137-197237 - 18 5.81e-12 AATAATATTA GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrXIV:602094-602562 + 34 5.81e-12 AGATAACAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXIV:569681-570145 - 49 5.81e-12 AGATAACAGT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrVII:774096-774688 + 7 5.81e-12 TTAATT GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTTAGCATG chrIX:183282-183763 - 13 5.81e-12 ACAAATTCCT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXII:731891-732266 + 62 2.18e-10 AACATACAAT GGGAGTTTGGCCGAGTGGTTTAAGGCGTC AGATTTAGGT chrIV:884153-884666 + 2 2.18e-10 T GCTCGTGTAGCTCAGTGGTTAGAGCTTCG TGCTTATAGC chrIX:325488-326088 + 10 2.59e-10 AAAATACGA GCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrIV:434012-434574 - 65 2.59e-10 ATCAGAA GCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrXIV:104557-105133 + 10 2.59e-10 AAGTTCTGA GCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrXV:353886-354341 - 22 2.59e-10 ACGGTTTACT GCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrXIV:560396-561166 - 6 2.59e-10 GTAATAACGG GCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTA chrIX:174798-175263 + 51 2.59e-10 ACAAGTACGA GCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrII:266157-266680 + 10 2.59e-10 TCAAAAACT GCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrXII:214642-215172 - 70 3.63e-10 TA GGGCACATGGCGCAGTTGGTAGCGCGCTT CCCTTGCAAG chrXV:853996-854454 - 56 3.63e-10 ACAGTCATCA GGGCACATGGCGCAGTTGGTAGCGCGCTT CCCTTGCAAG chrV:288164-288801 - 64 5.03e-10 TAATGATA GGCACTATGGCCGAGTGGTTAAGGCGACA GACTTGAAAT chrXV:274437-275001 + 4 5.91e-10 CGT GTCCCAGTGGCCGAGTGGTTAAGGCGATG CCCTGCTATT chrXII:784147-784638 + 12 5.91e-10 TTGTTCAACC GTCCCAGTGGCCGAGTGGTTAAGGCGATG CCTGCTATTT chrXII:628144-628664 + 29 1.10e-09 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGCGCC TGATTCAAGA chrXIV:442731-443277 + 52 1.10e-09 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGCGCC TGATTCAAGA chrXIII:504651-505238 + 1 1.10e-09 . GGTTGTTTGGCCGAGCGGTCTAAGGCGCC TGATTCAAGA chrX:523830-523930 - 15 1.28e-09 AGAGATTAAA GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrI:182320-182791 - 70 1.28e-09 TT GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrIV:437517-438021 + 53 1.28e-09 TCATTAGTAA GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrVIII:132814-133380 - 32 1.28e-09 TATAATAAGT GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrXII:962758-963385 - 6 1.71e-09 TATTATCGAC GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACT chrXI:379443-379927 + 45 1.71e-09 CAGATTAATA GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrX:424266-424366 - 32 1.71e-09 TAAATAAGAT GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrXIII:586403-586915 - 72 1.71e-09 . GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXII:687667-688183 - 29 1.71e-09 ATAAATAATA GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrIV:519531-519973 + 41 1.71e-09 GTGATTTTAC GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrVII:412100-412598 - 40 1.71e-09 TCAAAAAACT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrII:347377-347897 + 16 1.71e-09 TCATTTATAC GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrXI:83945-84457 + 57 1.71e-09 AAATTTGTAT GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrII:9361-9890 + 8 1.71e-09 AATTCGT GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrVII:823267-823720 + 39 1.71e-09 CAATAAGAGT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXI:307983-308443 - 26 1.71e-09 ACAATTAAGT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrX:378093-378193 + 66 1.71e-09 TAAATTAATA GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTA chrXII:92239-92868 + 45 2.28e-09 AAGTTAATAA GGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrXV:464229-464721 + 25 2.28e-09 AAGTTAACAA GGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrXV:300834-301417 + 22 2.28e-09 AGAAAAGATC GGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrVI:101066-101666 + 60 2.28e-09 ACAATAATTC GGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrXIII:195892-196415 - 39 2.28e-09 AAGTTCACAA GGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrXIV:102489-102979 + 32 3.01e-09 TATATTATAA GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrXV:228044-228592 + 63 3.01e-09 TAAAATATTA GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTA chrXVI:810436-810886 + 65 3.01e-09 CATTATTTGC GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGT chrXV:487216-487683 + 40 3.01e-09 AACAAAGTTA GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrVII:730922-731418 + 17 3.01e-09 TAGTCAAAAA GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrIII:127514-127928 + 45 3.01e-09 AAGATAAAAT GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrXIV:632373-632911 + 7 3.01e-09 TAAAGT GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrXV:281865-282480 + 42 3.45e-09 ACATGAAAGC GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrX:396556-396656 - 22 3.45e-09 TCAAAAGTAA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrXIII:183756-184206 - 9 3.45e-09 AATAAAGATC GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCAT chrXVI:571977-572589 + 36 3.45e-09 ACAATACTTC GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrVI:162001-162494 + 31 3.45e-09 AAGAAAACAA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrIV:83286-83834 + 38 3.45e-09 AGTTCACTTA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrXV:226448-226889 - 35 3.45e-09 AAGAAATTCA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrVII:930805-931239 - 23 3.45e-09 TAATCAGTAA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrIV:992586-993082 + 48 3.45e-09 ACAATTGTGA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrVII:115241-115781 + 27 9.73e-09 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTAGAGCGTTC GGCTTTTAAG chrIV:359343-359845 + 33 9.73e-09 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTAGAGCGTTC GGCTTTTAAG chrIX:299997-300525 - 61 1.24e-08 CAACGAAATA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrXIV:374654-375109 + 38 1.24e-08 AGAAAAATAA GCGGACTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrVII:185491-186032 - 47 1.24e-08 CAACGAAATA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrV:435563-436040 - 45 1.24e-08 AACAATAAGA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrX:414763-414863 + 3 1.24e-08 TA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrVII:122032-122548 + 29 1.24e-08 CAACGAATTA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrIV:1352262-1352751 - 54 1.24e-08 CAACGAAATA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrIV:1201488-1202098 + 7 1.24e-08 TAAATA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrVIII:358289-358810 - 42 1.99e-08 CAAATAGTAA GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrXIII:352060-352537 + 32 1.99e-08 ATGAATATAA GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrXVI:560013-560515 - 47 1.99e-08 TAGAAATTGA GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrVI:157703-158313 - 21 1.99e-08 ATAAATAGAA GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrII:36146-36641 + 55 1.99e-08 TTAGTTGTAA GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrIV:488457-489203 - 62 2.79e-08 ATGGGTTTCC GGTCCAATGGTCCAGTGGTTCAAGACGTC GCCTTTACAC chrX:422630-422730 + 21 5.91e-08 TCCTTTGTAT GCTTCAGTAGCTCAGTAGGAAGAGCGTCA GTCTCATAAT chrIV:1175587-1176092 + 40 5.91e-08 ACAAAACAAA GCTTCAGTAGCTCAGTAGGAAGAGCGTCA GTCTCATAAT chrVIII:466738-467311 + 16 9.77e-08 TGTATTTTTA GCCTCCTTAGCTTAGTGGTAGAGCGTTGC ACTTGTAATG chrVII:1004005-1004423 + 52 9.77e-08 TCAAGGGTTT GCCTCCTTAGCTTAGTGGTAGAGCGTTGC ACTTGTAATG chrXVI:743951-744666 + 26 9.77e-08 CAGTGTAAAA GCCTCCTTAGCTTAGTGGTAGAGCGTTGC ACTTGTAATG chrVII:661519-661987 + 46 9.77e-08 GTAAAAATTT GCCTCCTTAGCTTAGTGGTAGAGCGTTGC ACTTGTAATG chrX:374210-374310 - 59 1.19e-07 ACAAATAGTA GCTCGCGTGGCGTAATGGCAACGCGTCTG ACTTCTAATC chrVII:828482-829006 - 72 1.19e-07 . GCTCGCGTGGCGTAATGGCAACGCGTCTG ACTTCTAATC chrXI:162319-162770 - 36 1.19e-07 ACAAATATTA GCTCGCGTGGCGTAATGGCAACGCGTCTG ACTTCTAATC chrIV:568521-569273 + 35 1.19e-07 ACAAATAGTA GCTCGCGTGGCGTAATGGCAACGCGTCTG ACTTCTAATC chrII:405557-406290 + 5 1.19e-07 AGTA GCTCGCGTGGCGTAATGGCAACGCGTCTG ACTTCTAATC chrVII:405283-405738 + 10 1.19e-07 CAAACAGTA GCTCGCGTGGCGTAATGGCAACGCGTCTG ACTTCTAATC chrX:233686-233786 + 20 1.43e-07 TATATTCTTG TTCCTCGTGGCCCAATGGTCACGGCGTCT GGCTACGAAC chrII:642827-643348 - 13 1.43e-07 GTAATAGAAA GCTCGTATGGCGCAGTGGTAGCGCAGCAG ATTGCAAATC chrXV:340130-340598 - 29 1.43e-07 TCAAGATCTG TTCCTCGTGGCCCAATGGTCACGGCGTCT GGCTACGAAC chrV:492184-492574 - 67 1.43e-07 TCCTA TTCCTCGTGGCCCAATGGTCACGGCGTCT GGCTACGAAC chrXVI:435627-436217 - 64 1.43e-07 CAACAAAA GCTCGTATGGCGCAGTGGTAGCGCAGCAG ATTGCAAATC chrXIV:631656-632154 - 34 1.43e-07 AACTTCTACC GGGCGTGTGGTCTAGAGGTATGATTCTCG CTTAGGGTGC chrXVI:775448-776193 - 38 1.43e-07 TAATTCAAAA GCTCGTATGGCGCAGTGGTAGCGCAGCAG ATTGCAAATC chrIII:123392-123854 - 47 1.43e-07 TTTCAAAGGA GGGCGTGTGGTCTAGAGGTATGATTCTCG CTTAGGGTGC chrXV:594201-594687 - 3 1.89e-07 TGATTGAAAC GCGCAAGTGGTTCAGTGGTTAGAATTTAT GC chrIV:802540-803027 - 41 2.95e-07 ATGAATTGTC GGTCCTATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrVII:779358-779903 + 36 2.95e-07 AGTTAACCCC GGGCGGTTAGTGTAGTGGTTATCATCCCA CCCTTCCAAG chrIII:168099-168623 - 33 2.95e-07 AAGAAGTCCT GGTCCTATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrVIII:134045-134581 + 58 2.95e-07 AGTAAGTTCC GGTCCTATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrV:130842-131431 - 39 5.74e-07 ATAATTAAGA GGTTTTATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrII:350569-351129 + 28 5.74e-07 TCAATAAAAG GGTTTTATAGTGTAGTGGTTATCACTTTC GGTTTTGATC chrIV:1256845-1257294 - 32 7.87e-07 GATCTTCTTA GCGAAAGTGGTTCAGTGGTTAGAATTCAT GCTTCCCAAG chrXV:988963-989600 - 15 9.17e-07 TAGCTATGAC GTTTGGGTGGCCTAGCCGGTTCGCGTGTG CCTGTCGCTT chrVII:73626-74249 + 52 1.43e-06 ATAAGATACT TGCTTCATAGTTTAGTTGTAAAATTGAAG TTCAGTACAA chrX:204467-204567 + 46 2.49e-06 AACATAAAAA TCCGTGATAGTTTAATGGTCAGAATGGGC GCTTGTCGCG chrX:541302-541402 + 18 2.49e-06 AGAAAGAAAA TCCGTGATAGTTTAATGGTCAGAATGGGC GCTTGTCGCG chrVII:531412-531806 + 51 2.49e-06 TCGAGTTACT TCCGTGATAGTTTAATGGTCAGAATGGGC GCTTGTCGCG chrXII:426884-427430 + 25 2.49e-06 GTGTTTCTTA TCCGTGATAGTTTAATGGTCAGAATGGGC GCTTGTCGCG chrIX:336103-336655 - 63 2.49e-06 AGAAACAAA TCCGTGATAGTTTAATGGTCAGAATGGGC GCTTGTCGCG chrXI:513159-513638 - 27 2.49e-06 CAAATAACGT TCCGTGATAGTTTAATGGTCAGAATGGGC GCTTGTCGCG chrVIII:34480-36329 - 19 2.66e-06 CGAAGACGAA GCTGCTTTGGCTAAGTTGGTTTCTACCAT TGACGCTAAC chrXII:11011-12047 - 51 1.02e-05 GATGGTAGGG TAAGCGGTAGTGGAGTTGGATATGGGTAA TTGGAGGGTA chrXI:99280-100020 - 54 1.27e-05 TAGAGGACGA GACCGCATAGTACAGCGGGATGTTCCCAT AATAGATGTT chrXII:468729-469009 + 36 1.27e-05 TCCCGTCCGA TCAACTGTAGTTAAGCTGGTAAGAGCCTG ACCGAGTAGT chrX:360509-360609 - 21 1.41e-05 CCCGTAGCGC GACCAAATGTCGTAGTCGTCAACATGCGG TGTGGCGTAC chrVII:700185-701276 + 3 1.65e-05 CT GGCCGAGTGGTCTAAGGCGTCAGGTCGAG GTCCTGATCT chrXVI:641074-641661 + 71 2.13e-05 CGGAACAATG GCGCTTTTGGCTCGTCCGGATGATGCGAA A chrI:229125-230193 + 14 2.48e-05 GATAATATTG GGTGTTATAGGTAAATGGGACAGGGTATA GACCGCTGAG chrXIV:783321-784316 + 51 5.70e-05 AATGGCAGGG TAAGTGGTAGTGGGGTTGGATATGGGTAA TTGGAGGGTA chrXV:968027-968507 + 5 9.45e-05 CCAC TGCCCTGAAGTCCAGCAGGTACTGAGGCT TGGATCTCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNBDTGGYBYAGTKGKWWRRGSSNHS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVI:204739-205234 5.8e-12 31_[-2]_40 chrXVI:880094-880585 5.8e-12 51_[-2]_20 chrV:551032-551592 5.8e-12 67_[-2]_4 chrX:197137-197237 5.8e-12 17_[-2]_54 chrXIV:602094-602562 5.8e-12 33_[+2]_38 chrXIV:569681-570145 5.8e-12 48_[-2]_23 chrVII:774096-774688 5.8e-12 6_[+2]_65 chrIX:183282-183763 5.8e-12 12_[-2]_59 chrXII:731891-732266 2.2e-10 61_[+2]_10 chrIV:884153-884666 2.2e-10 1_[+2]_70 chrIX:325488-326088 2.6e-10 9_[+2]_62 chrIV:434012-434574 2.6e-10 64_[-2]_7 chrXIV:104557-105133 2.6e-10 9_[+2]_62 chrXV:353886-354341 2.6e-10 21_[-2]_50 chrXIV:560396-561166 2.6e-10 5_[-2]_66 chrIX:174798-175263 2.6e-10 50_[+2]_21 chrII:266157-266680 2.6e-10 9_[+2]_62 chrXII:214642-215172 3.6e-10 69_[-2]_2 chrXV:853996-854454 3.6e-10 55_[-2]_16 chrV:288164-288801 5e-10 63_[-2]_8 chrXV:274437-275001 5.9e-10 3_[+2]_68 chrXII:784147-784638 5.9e-10 11_[+2]_60 chrXII:628144-628664 1.1e-09 28_[+2]_43 chrXIV:442731-443277 1.1e-09 51_[+2]_20 chrXIII:504651-505238 1.1e-09 [+2]_71 chrX:523830-523930 1.3e-09 14_[-2]_57 chrI:182320-182791 1.3e-09 69_[-2]_2 chrIV:437517-438021 1.3e-09 52_[+2]_19 chrVIII:132814-133380 1.3e-09 31_[-2]_40 chrXII:962758-963385 1.7e-09 5_[-2]_66 chrXI:379443-379927 1.7e-09 44_[+2]_27 chrX:424266-424366 1.7e-09 31_[-2]_40 chrXIII:586403-586915 1.7e-09 71_[-2] chrXII:687667-688183 1.7e-09 28_[-2]_43 chrIV:519531-519973 1.7e-09 40_[+2]_31 chrVII:412100-412598 1.7e-09 39_[-2]_32 chrII:347377-347897 1.7e-09 15_[+2]_56 chrXI:83945-84457 1.7e-09 56_[+2]_15 chrII:9361-9890 1.7e-09 7_[+2]_64 chrVII:823267-823720 1.7e-09 38_[+2]_33 chrXI:307983-308443 1.7e-09 25_[-2]_46 chrX:378093-378193 1.7e-09 65_[+2]_6 chrXII:92239-92868 2.3e-09 44_[+2]_27 chrXV:464229-464721 2.3e-09 24_[+2]_47 chrXV:300834-301417 2.3e-09 21_[+2]_50 chrVI:101066-101666 2.3e-09 59_[+2]_12 chrXIII:195892-196415 2.3e-09 38_[-2]_33 chrXIV:102489-102979 3e-09 31_[+2]_40 chrXV:228044-228592 3e-09 62_[+2]_9 chrXVI:810436-810886 3e-09 64_[+2]_7 chrXV:487216-487683 3e-09 39_[+2]_32 chrVII:730922-731418 3e-09 16_[+2]_55 chrIII:127514-127928 3e-09 44_[+2]_27 chrXIV:632373-632911 3e-09 6_[+2]_65 chrXV:281865-282480 3.5e-09 41_[+2]_30 chrX:396556-396656 3.5e-09 21_[-2]_50 chrXIII:183756-184206 3.5e-09 8_[-2]_63 chrXVI:571977-572589 3.5e-09 35_[+2]_36 chrVI:162001-162494 3.5e-09 30_[+2]_41 chrIV:83286-83834 3.5e-09 37_[+2]_34 chrXV:226448-226889 3.5e-09 34_[-2]_37 chrVII:930805-931239 3.5e-09 22_[-2]_49 chrIV:992586-993082 3.5e-09 47_[+2]_24 chrVII:115241-115781 9.7e-09 26_[+2]_45 chrIV:359343-359845 9.7e-09 32_[+2]_39 chrIX:299997-300525 1.2e-08 60_[-2]_11 chrXIV:374654-375109 1.2e-08 37_[+2]_34 chrVII:185491-186032 1.2e-08 46_[-2]_25 chrV:435563-436040 1.2e-08 44_[-2]_27 chrX:414763-414863 1.2e-08 2_[+2]_69 chrVII:122032-122548 1.2e-08 28_[+2]_43 chrIV:1352262-1352751 1.2e-08 53_[-2]_18 chrIV:1201488-1202098 1.2e-08 6_[+2]_65 chrVIII:358289-358810 2e-08 41_[-2]_30 chrXIII:352060-352537 2e-08 31_[+2]_40 chrXVI:560013-560515 2e-08 46_[-2]_25 chrVI:157703-158313 2e-08 20_[-2]_51 chrII:36146-36641 2e-08 54_[+2]_17 chrIV:488457-489203 2.8e-08 61_[-2]_10 chrX:422630-422730 5.9e-08 20_[+2]_51 chrIV:1175587-1176092 5.9e-08 39_[+2]_32 chrVIII:466738-467311 9.8e-08 15_[+2]_56 chrVII:1004005-1004423 9.8e-08 51_[+2]_20 chrXVI:743951-744666 9.8e-08 25_[+2]_46 chrVII:661519-661987 9.8e-08 45_[+2]_26 chrX:374210-374310 1.2e-07 58_[-2]_13 chrVII:828482-829006 1.2e-07 71_[-2] chrXI:162319-162770 1.2e-07 35_[-2]_36 chrIV:568521-569273 1.2e-07 34_[+2]_37 chrII:405557-406290 1.2e-07 4_[+2]_67 chrVII:405283-405738 1.2e-07 9_[+2]_62 chrX:233686-233786 1.4e-07 19_[+2]_52 chrII:642827-643348 1.4e-07 12_[-2]_59 chrXV:340130-340598 1.4e-07 28_[-2]_43 chrV:492184-492574 1.4e-07 66_[-2]_5 chrXVI:435627-436217 1.4e-07 63_[-2]_8 chrXIV:631656-632154 1.4e-07 33_[-2]_38 chrXVI:775448-776193 1.4e-07 37_[-2]_34 chrIII:123392-123854 1.4e-07 46_[-2]_25 chrXV:594201-594687 1.9e-07 2_[-2]_69 chrIV:802540-803027 2.9e-07 40_[-2]_31 chrVII:779358-779903 2.9e-07 35_[+2]_36 chrIII:168099-168623 2.9e-07 32_[-2]_39 chrVIII:134045-134581 2.9e-07 57_[+2]_14 chrV:130842-131431 5.7e-07 38_[-2]_33 chrII:350569-351129 5.7e-07 27_[+2]_44 chrIV:1256845-1257294 7.9e-07 31_[-2]_40 chrXV:988963-989600 9.2e-07 14_[-2]_57 chrVII:73626-74249 1.4e-06 51_[+2]_20 chrX:204467-204567 2.5e-06 45_[+2]_26 chrX:541302-541402 2.5e-06 17_[+2]_54 chrVII:531412-531806 2.5e-06 50_[+2]_21 chrXII:426884-427430 2.5e-06 24_[+2]_47 chrIX:336103-336655 2.5e-06 62_[-2]_9 chrXI:513159-513638 2.5e-06 26_[-2]_45 chrVIII:34480-36329 2.7e-06 18_[-2]_53 chrXII:11011-12047 1e-05 50_[-2]_21 chrXI:99280-100020 1.3e-05 53_[-2]_18 chrXII:468729-469009 1.3e-05 35_[+2]_36 chrX:360509-360609 1.4e-05 20_[-2]_51 chrVII:700185-701276 1.7e-05 2_[+2]_69 chrXVI:641074-641661 2.1e-05 70_[+2]_1 chrI:229125-230193 2.5e-05 13_[+2]_58 chrXIV:783321-784316 5.7e-05 50_[+2]_21 chrXV:968027-968507 9.5e-05 4_[+2]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNBDTGGYBYAGTKGKWWRRGSSNHS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSBYNBDTGGYBYAGTKGKWWRRGSSNHS width=29 seqs=125 chrVI:204739-205234 ( 32) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrXVI:880094-880585 ( 52) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrV:551032-551592 ( 68) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrX:197137-197237 ( 18) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrXIV:602094-602562 ( 34) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXIV:569681-570145 ( 49) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrVII:774096-774688 ( 7) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrIX:183282-183763 ( 13) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXII:731891-732266 ( 62) GGGAGTTTGGCCGAGTGGTTTAAGGCGTC 1 chrIV:884153-884666 ( 2) GCTCGTGTAGCTCAGTGGTTAGAGCTTCG 1 chrIX:325488-326088 ( 10) GCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrIV:434012-434574 ( 65) GCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrXIV:104557-105133 ( 10) GCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrXV:353886-354341 ( 22) GCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrXIV:560396-561166 ( 6) GCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrIX:174798-175263 ( 51) GCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrII:266157-266680 ( 10) GCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrXII:214642-215172 ( 70) GGGCACATGGCGCAGTTGGTAGCGCGCTT 1 chrXV:853996-854454 ( 56) GGGCACATGGCGCAGTTGGTAGCGCGCTT 1 chrV:288164-288801 ( 64) GGCACTATGGCCGAGTGGTTAAGGCGACA 1 chrXV:274437-275001 ( 4) GTCCCAGTGGCCGAGTGGTTAAGGCGATG 1 chrXII:784147-784638 ( 12) GTCCCAGTGGCCGAGTGGTTAAGGCGATG 1 chrXII:628144-628664 ( 29) GGTTGTTTGGCCGAGCGGTCTAAGGCGCC 1 chrXIV:442731-443277 ( 52) GGTTGTTTGGCCGAGCGGTCTAAGGCGCC 1 chrXIII:504651-505238 ( 1) GGTTGTTTGGCCGAGCGGTCTAAGGCGCC 1 chrX:523830-523930 ( 15) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrI:182320-182791 ( 70) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrIV:437517-438021 ( 53) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrVIII:132814-133380 ( 32) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrXII:962758-963385 ( 6) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrXI:379443-379927 ( 45) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrX:424266-424366 ( 32) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrXIII:586403-586915 ( 72) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXII:687667-688183 ( 29) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrIV:519531-519973 ( 41) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrVII:412100-412598 ( 40) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrII:347377-347897 ( 16) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrXI:83945-84457 ( 57) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrII:9361-9890 ( 8) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrVII:823267-823720 ( 39) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXI:307983-308443 ( 26) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrX:378093-378193 ( 66) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXII:92239-92868 ( 45) GGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrXV:464229-464721 ( 25) GGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrXV:300834-301417 ( 22) GGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrVI:101066-101666 ( 60) GGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrXIII:195892-196415 ( 39) GGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrXIV:102489-102979 ( 32) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrXV:228044-228592 ( 63) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrXVI:810436-810886 ( 65) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrXV:487216-487683 ( 40) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrVII:730922-731418 ( 17) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrIII:127514-127928 ( 45) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrXIV:632373-632911 ( 7) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrXV:281865-282480 ( 42) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrX:396556-396656 ( 22) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXIII:183756-184206 ( 9) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXVI:571977-572589 ( 36) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrVI:162001-162494 ( 31) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrIV:83286-83834 ( 38) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXV:226448-226889 ( 35) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrVII:930805-931239 ( 23) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrIV:992586-993082 ( 48) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrVII:115241-115781 ( 27) TCCTTGTTAGCTCAGTTGGTAGAGCGTTC 1 chrIV:359343-359845 ( 33) TCCTTGTTAGCTCAGTTGGTAGAGCGTTC 1 chrIX:299997-300525 ( 61) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrXIV:374654-375109 ( 38) GCGGACTTAGCTCAGTTGGGAGAGCGCCA 1 chrVII:185491-186032 ( 47) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrV:435563-436040 ( 45) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrX:414763-414863 ( 3) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrVII:122032-122548 ( 29) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrIV:1352262-1352751 ( 54) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrIV:1201488-1202098 ( 7) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrVIII:358289-358810 ( 42) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrXIII:352060-352537 ( 32) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrXVI:560013-560515 ( 47) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrVI:157703-158313 ( 21) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrII:36146-36641 ( 55) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrIV:488457-489203 ( 62) GGTCCAATGGTCCAGTGGTTCAAGACGTC 1 chrX:422630-422730 ( 21) GCTTCAGTAGCTCAGTAGGAAGAGCGTCA 1 chrIV:1175587-1176092 ( 40) GCTTCAGTAGCTCAGTAGGAAGAGCGTCA 1 chrVIII:466738-467311 ( 16) GCCTCCTTAGCTTAGTGGTAGAGCGTTGC 1 chrVII:1004005-1004423 ( 52) GCCTCCTTAGCTTAGTGGTAGAGCGTTGC 1 chrXVI:743951-744666 ( 26) GCCTCCTTAGCTTAGTGGTAGAGCGTTGC 1 chrVII:661519-661987 ( 46) GCCTCCTTAGCTTAGTGGTAGAGCGTTGC 1 chrX:374210-374310 ( 59) GCTCGCGTGGCGTAATGGCAACGCGTCTG 1 chrVII:828482-829006 ( 72) GCTCGCGTGGCGTAATGGCAACGCGTCTG 1 chrXI:162319-162770 ( 36) GCTCGCGTGGCGTAATGGCAACGCGTCTG 1 chrIV:568521-569273 ( 35) GCTCGCGTGGCGTAATGGCAACGCGTCTG 1 chrII:405557-406290 ( 5) GCTCGCGTGGCGTAATGGCAACGCGTCTG 1 chrVII:405283-405738 ( 10) GCTCGCGTGGCGTAATGGCAACGCGTCTG 1 chrX:233686-233786 ( 20) TTCCTCGTGGCCCAATGGTCACGGCGTCT 1 chrII:642827-643348 ( 13) GCTCGTATGGCGCAGTGGTAGCGCAGCAG 1 chrXV:340130-340598 ( 29) TTCCTCGTGGCCCAATGGTCACGGCGTCT 1 chrV:492184-492574 ( 67) TTCCTCGTGGCCCAATGGTCACGGCGTCT 1 chrXVI:435627-436217 ( 64) GCTCGTATGGCGCAGTGGTAGCGCAGCAG 1 chrXIV:631656-632154 ( 34) GGGCGTGTGGTCTAGAGGTATGATTCTCG 1 chrXVI:775448-776193 ( 38) GCTCGTATGGCGCAGTGGTAGCGCAGCAG 1 chrIII:123392-123854 ( 47) GGGCGTGTGGTCTAGAGGTATGATTCTCG 1 chrXV:594201-594687 ( 3) GCGCAAGTGGTTCAGTGGTTAGAATTTAT 1 chrIV:802540-803027 ( 41) GGTCCTATAGTGTAGTGGTTATCACTTTC 1 chrVII:779358-779903 ( 36) GGGCGGTTAGTGTAGTGGTTATCATCCCA 1 chrIII:168099-168623 ( 33) GGTCCTATAGTGTAGTGGTTATCACTTTC 1 chrVIII:134045-134581 ( 58) GGTCCTATAGTGTAGTGGTTATCACTTTC 1 chrV:130842-131431 ( 39) GGTTTTATAGTGTAGTGGTTATCACTTTC 1 chrII:350569-351129 ( 28) GGTTTTATAGTGTAGTGGTTATCACTTTC 1 chrIV:1256845-1257294 ( 32) GCGAAAGTGGTTCAGTGGTTAGAATTCAT 1 chrXV:988963-989600 ( 15) GTTTGGGTGGCCTAGCCGGTTCGCGTGTG 1 chrVII:73626-74249 ( 52) TGCTTCATAGTTTAGTTGTAAAATTGAAG 1 chrX:204467-204567 ( 46) TCCGTGATAGTTTAATGGTCAGAATGGGC 1 chrX:541302-541402 ( 18) TCCGTGATAGTTTAATGGTCAGAATGGGC 1 chrVII:531412-531806 ( 51) TCCGTGATAGTTTAATGGTCAGAATGGGC 1 chrXII:426884-427430 ( 25) TCCGTGATAGTTTAATGGTCAGAATGGGC 1 chrIX:336103-336655 ( 63) TCCGTGATAGTTTAATGGTCAGAATGGGC 1 chrXI:513159-513638 ( 27) TCCGTGATAGTTTAATGGTCAGAATGGGC 1 chrVIII:34480-36329 ( 19) GCTGCTTTGGCTAAGTTGGTTTCTACCAT 1 chrXII:11011-12047 ( 51) TAAGCGGTAGTGGAGTTGGATATGGGTAA 1 chrXI:99280-100020 ( 54) GACCGCATAGTACAGCGGGATGTTCCCAT 1 chrXII:468729-469009 ( 36) TCAACTGTAGTTAAGCTGGTAAGAGCCTG 1 chrX:360509-360609 ( 21) GACCAAATGTCGTAGTCGTCAACATGCGG 1 chrVII:700185-701276 ( 3) GGCCGAGTGGTCTAAGGCGTCAGGTCGAG 1 chrXVI:641074-641661 ( 71) GCGCTTTTGGCTCGTCCGGATGATGCGAA 1 chrI:229125-230193 ( 14) GGTGTTATAGGTAAATGGGACAGGGTATA 1 chrXIV:783321-784316 ( 51) TAAGTGGTAGTGGGGTTGGATATGGGTAA 1 chrXV:968027-968507 ( 5) TGCCCTGAAGTCCAGCAGGTACTGAGGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNBDTGGYBYAGTKGKWWRRGSSNHS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 10.5802 E= 8.1e-347 -1361 -1361 216 -125 -179 125 104 -267 -208 75 39 17 -225 109 -15 17 -67 35 48 -8 -108 75 4 11 -8 -1361 98 11 -525 -1361 -1361 170 -16 -1361 190 -1361 -1361 -1361 235 -525 -1361 170 -461 24 -525 122 30 -4 -116 60 -36 45 169 -1361 -361 -1361 -67 -1361 204 -525 -425 -161 -461 158 -367 -29 148 -16 -1361 -461 235 -1361 -1361 -202 125 68 -4 -36 -202 73 94 -302 -180 14 75 -80 71 -244 65 -29 48 -179 -125 -80 162 -93 -267 117 88 -100 -1361 109 112 -93 -35 44 20 -16 -25 60 -52 3 -61 109 35 -116 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNBDTGGYBYAGTKGKWWRRGSSNHS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 125 E= 8.1e-347 0.000000 0.000000 0.872000 0.128000 0.088000 0.464000 0.400000 0.048000 0.072000 0.328000 0.256000 0.344000 0.064000 0.416000 0.176000 0.344000 0.192000 0.248000 0.272000 0.288000 0.144000 0.328000 0.200000 0.328000 0.288000 0.000000 0.384000 0.328000 0.008000 0.000000 0.000000 0.992000 0.272000 0.000000 0.728000 0.000000 0.000000 0.000000 0.992000 0.008000 0.000000 0.632000 0.008000 0.360000 0.008000 0.456000 0.240000 0.296000 0.136000 0.296000 0.152000 0.416000 0.984000 0.000000 0.016000 0.000000 0.192000 0.000000 0.800000 0.008000 0.016000 0.064000 0.008000 0.912000 0.024000 0.160000 0.544000 0.272000 0.000000 0.008000 0.992000 0.000000 0.000000 0.048000 0.464000 0.488000 0.296000 0.152000 0.048000 0.504000 0.584000 0.024000 0.056000 0.336000 0.512000 0.112000 0.320000 0.056000 0.480000 0.160000 0.272000 0.088000 0.128000 0.112000 0.600000 0.160000 0.048000 0.440000 0.360000 0.152000 0.000000 0.416000 0.424000 0.160000 0.240000 0.264000 0.224000 0.272000 0.256000 0.296000 0.136000 0.312000 0.200000 0.416000 0.248000 0.136000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNBDTGGYBYAGTKGKWWRRGSSNHS MEME-2 regular expression -------------------------------------------------------------------------------- G[CG][TCG][CT][TGC][CTG][GTA]T[GA]G[CT][CTG][TC]AGT[GT]G[TG][TA][AT][AG][AG]G[CG][GC][TCAG][TCA][CGA] -------------------------------------------------------------------------------- Time 671.62 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGYWTWGMCCGCKSAGGYWMGWGYCSTG MEME-3 width = 29 sites = 16 llr = 454 E-value = 1.3e-073 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGYWTWGMCCGCKSAGGYWMGWGYCSTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::141434:111::8:::44163::::: pos.-specific C :::4:1::5a8:9:6:::4:6:::496:: probability G aaa:1::71::9:641aa1::9:7:141a matrix T :::5586:::1:14:1::56::416:19: bits 2.4 *** * ** * 2.1 *** * ** * 1.9 *** * * ** * * 1.7 *** * ** ** * * * Relative 1.4 *** **** * ** * * * Entropy 1.2 *** * ****** ** ** **** (40.9 bits) 0.9 *** * * ********* ** ****** 0.7 *** ************************ 0.5 ***************************** 0.2 ***************************** 0.0 ----------------------------- Multilevel GGGTTTTGCCCGCGCAGGTTCGAGTCCTG consensus CA AAA TG CAA TAC G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYWTWGMCCGCKSAGGYWMGWGYCSTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrIV:980736-981271 - 30 2.61e-18 GAAATCTTTT GGGCTTTGCCCGCGCAGGTTCGAGTCCTG CAGTTGTCGT chrI:182320-182791 - 26 2.61e-18 GAAATCTTTT GGGCTTTGCCCGCGCAGGTTCGAGTCCTG CAGTTGTCGT chrXIII:258815-259496 - 62 2.61e-18 GAAATCTTTT GGGCTTTGCCCGCGCAGGTTCGAGTCCTG CAGTTGTCGT chrII:226855-227395 + 44 2.61e-18 GAAATCTTTT GGGCTTTGCCCGCGCAGGTTCGAGTCCTG CAGTTGTCGT chrI:5-1142 - 18 1.02e-14 AAATGGCACA GGGTATAGACCGCTGAGGCAAGTGCCGTG CATAATGATG chrXI:665521-666798 + 27 1.02e-14 AAATGGCACA GGGTATAGACCGCTGAGGCAAGTGCCGTG CATAATGATG chrII:5778-7007 - 6 1.02e-14 AAATGGCTCA GGGTATAGACCGCTGAGGCAAGTGCCGTG CATAA chrXV:274437-275001 + 67 3.93e-14 ATTAGGCATT GGGTTTTACCTGCGCAGGTTCGAATCCTG TCTGT chrVI:191287-191823 - 17 3.93e-14 ATTAGGCATT GGGTTTTACCTGCGCAGGTTCGAATCCTG TCTGTGACGC chrXI:1-1079 - 57 4.32e-14 AAATTGCACA GGGTATAAACCGCTGAGGCAAGTGCCGTG AATAATGATG chrV:569380-570378 + 2 4.32e-14 A GGGTATAAACCGCTGAGGCAAGTGCCGTG CATAATGATG chrXVI:689357-689895 + 33 2.44e-13 GAAATCTGTT GGGCTCTGCCCGCGCTGGTTCAAATCCTG CTGGTGTCGT chrV:288164-288801 - 20 2.44e-13 GAAATCTGTT GGGCTCTGCCCGCGCTGGTTCAAATCCTG CTGGTGTCGT chrXIII:923218-924367 + 29 2.64e-13 AAATGGAACA GGGTATAGACCACTGAGGCAAGTGCCGTG CATAATGATA chrV:123207-123400 + 69 1.91e-10 GCGCTGCACA GGGAGTAAGCAGAGCGGGCTAGAGCGCGG TTT chrVII:1050170-1050654 + 59 1.99e-10 AAAACCCTCT GGGAAATGACCGTGCAGGGTCGTTTGTGG ATGCATCTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYWTWGMCCGCKSAGGYWMGWGYCSTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:980736-981271 2.6e-18 29_[-3]_42 chrI:182320-182791 2.6e-18 25_[-3]_46 chrXIII:258815-259496 2.6e-18 61_[-3]_10 chrII:226855-227395 2.6e-18 43_[+3]_28 chrI:5-1142 1e-14 17_[-3]_54 chrXI:665521-666798 1e-14 26_[+3]_45 chrII:5778-7007 1e-14 5_[-3]_66 chrXV:274437-275001 3.9e-14 66_[+3]_5 chrVI:191287-191823 3.9e-14 16_[-3]_55 chrXI:1-1079 4.3e-14 56_[-3]_15 chrV:569380-570378 4.3e-14 1_[+3]_70 chrXVI:689357-689895 2.4e-13 32_[+3]_39 chrV:288164-288801 2.4e-13 19_[-3]_52 chrXIII:923218-924367 2.6e-13 28_[+3]_43 chrV:123207-123400 1.9e-10 68_[+3]_3 chrVII:1050170-1050654 2e-10 58_[+3]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYWTWGMCCGCKSAGGYWMGWGYCSTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGYWTWGMCCGCKSAGGYWMGWGYCSTG width=29 seqs=16 chrIV:980736-981271 ( 30) GGGCTTTGCCCGCGCAGGTTCGAGTCCTG 1 chrI:182320-182791 ( 26) GGGCTTTGCCCGCGCAGGTTCGAGTCCTG 1 chrXIII:258815-259496 ( 62) GGGCTTTGCCCGCGCAGGTTCGAGTCCTG 1 chrII:226855-227395 ( 44) GGGCTTTGCCCGCGCAGGTTCGAGTCCTG 1 chrI:5-1142 ( 18) GGGTATAGACCGCTGAGGCAAGTGCCGTG 1 chrXI:665521-666798 ( 27) GGGTATAGACCGCTGAGGCAAGTGCCGTG 1 chrII:5778-7007 ( 6) GGGTATAGACCGCTGAGGCAAGTGCCGTG 1 chrXV:274437-275001 ( 67) GGGTTTTACCTGCGCAGGTTCGAATCCTG 1 chrVI:191287-191823 ( 17) GGGTTTTACCTGCGCAGGTTCGAATCCTG 1 chrXI:1-1079 ( 57) GGGTATAAACCGCTGAGGCAAGTGCCGTG 1 chrV:569380-570378 ( 2) GGGTATAAACCGCTGAGGCAAGTGCCGTG 1 chrXVI:689357-689895 ( 33) GGGCTCTGCCCGCGCTGGTTCAAATCCTG 1 chrV:288164-288801 ( 20) GGGCTCTGCCCGCGCTGGTTCAAATCCTG 1 chrXIII:923218-924367 ( 29) GGGTATAGACCACTGAGGCAAGTGCCGTG 1 chrV:123207-123400 ( 69) GGGAGTAAGCAGAGCGGGCTAGAGCGCGG 1 chrVII:1050170-1050654 ( 59) GGGAAATGACCGTGCAGGGTCGTTTGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYWTWGMCCGCKSAGGYWMGWGYCSTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 10.5498 E= 1.3e-073 -1064 -1064 236 -1064 -1064 -1064 236 -1064 -1064 -1064 236 -1064 -129 94 -1064 71 52 -1064 -164 71 -228 -64 -1064 141 52 -1064 -1064 88 4 -1064 182 -1064 52 136 -164 -1064 -1064 236 -1064 -1064 -228 206 -1064 -129 -228 -1064 226 -1064 -228 216 -1064 -228 -1064 -1064 168 30 -1064 168 94 -1064 141 -1064 -164 -129 -1064 -1064 236 -1064 -1064 -1064 236 -1064 -1064 116 -164 71 30 -1064 -1064 104 52 153 -1064 -1064 -129 -1064 216 -1064 88 -1064 -1064 52 -29 -1064 182 -228 -1064 116 -1064 88 -1064 216 -64 -1064 -1064 153 94 -228 -1064 -1064 -64 152 -1064 -1064 236 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYWTWGMCCGCKSAGGYWMGWGYCSTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 16 E= 1.3e-073 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.125000 0.375000 0.000000 0.500000 0.437500 0.000000 0.062500 0.500000 0.062500 0.125000 0.000000 0.812500 0.437500 0.000000 0.000000 0.562500 0.312500 0.000000 0.687500 0.000000 0.437500 0.500000 0.062500 0.000000 0.000000 1.000000 0.000000 0.000000 0.062500 0.812500 0.000000 0.125000 0.062500 0.000000 0.937500 0.000000 0.062500 0.875000 0.000000 0.062500 0.000000 0.000000 0.625000 0.375000 0.000000 0.625000 0.375000 0.000000 0.812500 0.000000 0.062500 0.125000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.437500 0.062500 0.500000 0.375000 0.000000 0.000000 0.625000 0.437500 0.562500 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.562500 0.000000 0.000000 0.437500 0.250000 0.000000 0.687500 0.062500 0.000000 0.437500 0.000000 0.562500 0.000000 0.875000 0.125000 0.000000 0.000000 0.562500 0.375000 0.062500 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYWTWGMCCGCKSAGGYWMGWGYCSTG MEME-3 regular expression -------------------------------------------------------------------------------- GGG[TC][TA]T[TA][GA][CA]CCGC[GT][CG]AGG[TC][TA][CA]G[AT][GA][TC]C[CG]TG -------------------------------------------------------------------------------- Time 968.43 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:266157-266680 4.29e-12 9_[+2(2.59e-10)]_11_[+1(2.45e-09)]_\ 25 chrVIII:132814-133380 1.15e-06 31_[-2(1.28e-09)]_40 chrXIV:771877-772526 2.02e-01 100 chrVII:148166-149534 9.66e-01 100 chrXI:202814-203320 6.21e-08 21_[+1(4.54e-11)]_53 chrI:141677-143639 6.17e-01 100 chrIV:1468775-1469163 6.44e-01 100 chrXVI:821669-822369 7.76e-01 100 chrXIII:504651-505238 1.45e-06 [+2(1.10e-09)]_71 chrVII:516309-516575 1.49e-01 100 chrVII:384628-385073 2.96e-01 100 chrXI:326099-327557 6.58e-01 100 chrIV:667742-668260 2.02e-08 62_[-1(6.30e-12)]_12 chrIII:123392-123854 5.28e-16 10_[-1(9.12e-16)]_10_[-2(1.43e-07)]_\ 25 chrXVI:431817-432343 8.82e-02 100 chrIV:1175587-1176092 9.19e-05 39_[+2(5.91e-08)]_32 chrXI:513159-513638 4.20e-03 26_[-2(2.49e-06)]_45 chrIX:394678-395321 5.44e-01 100 chrXIV:499237-501768 1.00e+00 100 chrIV:1075246-1075781 6.81e-09 15_[-1(1.63e-10)]_11_[-2(1.57e-05)]_\ 19 chrXII:281952-283945 4.96e-01 100 chrII:44962-45417 7.46e-01 100 chrII:197211-197889 8.16e-09 34_[+1(6.30e-12)]_40 chrXI:385149-385470 3.80e-01 100 chrXVI:76144-76749 6.56e-02 66_[-2(6.22e-05)]_5 chrVII:405283-405738 4.58e-11 9_[+2(1.19e-07)]_10_[+1(8.16e-11)]_\ 26 chrXV:677960-679233 9.98e-01 100 chrXII:5-290 7.37e-01 100 chrVII:876169-876828 5.91e-01 100 chrXV:853996-854454 1.42e-16 18_[-1(3.90e-11)]_11_[-2(3.63e-10)]_\ 16 chrXIII:23777-26506 1.22e-02 100 chrV:152100-153306 1.77e-01 100 chrXVI:575190-575604 2.58e-01 100 chrII:466247-466605 5.83e-01 100 chrIV:884153-884666 1.41e-06 1_[+2(2.18e-10)]_70 chrXV:619045-619593 3.65e-01 100 chrIV:1016936-1017521 1.28e-07 35_[-1(6.11e-11)]_39 chrXIII:650783-651737 7.83e-01 100 chrVII:110297-110934 6.76e-04 66_[-1(4.96e-07)]_8 chrXII:710351-710981 2.90e-01 100 chrVIII:147621-149316 4.19e-01 100 chrX:517635-517735 2.33e-01 100 chrVII:328368-329051 5.27e-01 100 chrVIII:379533-379889 4.56e-04 66_[-1(6.98e-07)]_8 chrXII:808890-809585 9.01e-01 100 chrXIII:222591-224387 6.12e-01 100 chrXIV:62014-64548 6.90e-01 100 chrXIV:632373-632911 1.01e-09 6_[+2(3.01e-09)]_12_[+1(8.60e-08)]_\ 27 chrVII:413309-413650 2.20e-01 100 chrXVI:775448-776193 1.72e-07 1_[-1(2.54e-07)]_10_[-2(1.43e-07)]_\ 34 chrXII:1028129-1030483 3.02e-01 100 chrIX:183282-183763 1.22e-09 12_[-2(5.81e-12)]_59 chrXV:571612-572192 9.75e-01 100 chrXIII:195892-196415 6.02e-06 38_[-2(2.28e-09)]_33 chrVII:958537-958941 3.39e-01 100 chrXI:519511-521222 5.46e-01 100 chrX:360509-360609 2.98e-02 20_[-2(1.41e-05)]_51 chrVI:269495-270159 4.01e-01 100 chrXVI:302538-304212 2.08e-03 52_[+3(3.87e-05)]_19 chrVI:191287-191823 1.39e-11 16_[-3(3.93e-14)]_55 chrXI:322402-322964 2.12e-01 100 chrXII:784147-784638 2.51e-06 11_[+2(5.91e-10)]_60 chrXI:645275-645740 8.85e-01 100 chrXI:67709-69167 2.59e-01 100 chrV:288164-288801 2.46e-16 19_[-3(2.44e-13)]_15_[-2(5.03e-10)]_\ 8 chrIV:1201488-1202098 4.71e-12 6_[+2(1.24e-08)]_11_[+1(4.54e-11)]_\ 28 chrVII:276962-278681 9.11e-01 100 chrXIII:302707-303209 1.01e-01 100 chrXIII:872611-872989 4.53e-01 100 chrXII:1051906-1052673 9.42e-01 100 chrXII:468729-469009 2.27e-03 63_[+2(3.04e-06)]_8 chrVIII:4984-5883 7.29e-01 100 chrXI:146791-147293 8.09e-01 100 chrIII:82342-82766 5.96e-01 100 chrXII:949226-953168 4.69e-02 100 chrIII:127514-127928 1.70e-05 44_[+2(3.01e-09)]_27 chrV:335438-335912 1.37e-01 100 chrXII:374198-374639 6.66e-06 26_[+1(5.47e-09)]_48 chrIV:1352262-1352751 8.39e-13 16_[-1(4.54e-11)]_11_[-2(1.24e-08)]_\ 18 chrXII:83993-84472 4.09e-01 100 chrVII:310429-312222 9.97e-01 100 chrXVI:519962-520638 6.45e-01 100 chrVI:167245-167691 1.14e-05 27_[+2(9.07e-05)]_18_[+1(4.73e-08)] chrXIV:631656-632154 1.73e-04 33_[-2(1.43e-07)]_38 chrII:256325-257042 2.80e-01 100 chrXII:368695-371364 1.59e-01 100 chrII:5778-7007 4.61e-12 5_[-3(1.02e-14)]_66 chrXII:897646-899666 6.05e-01 100 chrXV:968027-968507 3.64e-02 4_[+2(9.45e-05)]_67 chrVIII:85056-85559 6.03e-06 47_[-1(4.53e-10)]_27 chrVII:122032-122548 5.45e-13 28_[+2(1.24e-08)]_11_[+1(4.54e-11)]_\ 6 chrXI:74362-74986 1.15e-05 8_[+2(8.71e-05)]_3_[+1(8.60e-08)]_\ 34 chrXV:1003915-1004960 9.71e-01 100 chrIV:359343-359845 5.34e-06 32_[+2(9.73e-09)]_39 chrXV:113503-114002 9.56e-01 100 chrVII:774096-774688 1.26e-14 6_[+2(5.81e-12)]_11_[+1(9.19e-10)]_\ 28 chrXVI:280622-282950 8.48e-01 100 chrXII:522162-523598 4.89e-01 100 chrXVI:819314-819871 1.21e-08 27_[+1(6.30e-12)]_47 chrVIII:401064-401336 3.49e-01 100 chrVI:63964-65408 9.95e-01 100 chrII:226855-227395 8.14e-15 43_[+3(2.61e-18)]_28 chrXVI:585734-586504 4.42e-02 100 chrII:702125-702505 4.80e-01 100 chrXII:262679-263955 8.46e-01 100 chrII:680358-682238 8.06e-01 100 chrIV:437517-438021 7.05e-07 52_[+2(1.28e-09)]_19 chrXVI:941978-942840 9.98e-01 100 chrIII:315626-316619 3.50e-01 100 chrXV:83223-83413 1.28e-01 100 chrXIII:122939-124743 7.13e-01 100 chrIX:316100-318442 3.09e-01 100 chrVI:95420-95958 1.03e-01 100 chrII:405557-406290 2.53e-12 4_[+2(1.19e-07)]_10_[+1(8.16e-11)]_\ 31 chrV:117603-118342 8.14e-01 100 chrIV:835743-836317 1.93e-01 100 chrXV:514365-514818 5.55e-01 100 chrXII:924569-924868 2.14e-01 100 chrIX:268047-268267 3.02e-01 100 chrXV:424179-424624 7.03e-01 100 chrVII:794149-794625 9.19e-01 100 chrXIII:510737-511165 9.43e-02 100 chrVIII:174687-175949 7.05e-02 13_[-2(5.70e-05)]_58 chrXVI:901603-901950 3.93e-01 100 chrV:434393-434772 2.90e-05 15_[-1(4.96e-07)]_59 chrVII:592525-593015 3.15e-02 100 chrXV:988963-989600 1.55e-03 14_[-2(9.17e-07)]_57 chrXIII:661649-662048 1.07e-01 100 chrXV:881964-882481 3.11e-01 100 chrX:538327-538427 2.39e-07 27_[+1(9.19e-10)]_47 chrVII:730922-731418 1.01e-09 16_[+2(3.01e-09)]_12_[+1(8.60e-08)]_\ 17 chrX:414763-414863 4.71e-12 2_[+2(1.24e-08)]_11_[+1(4.54e-11)]_\ 32 chrXII:645811-646211 3.50e-01 100 chrXII:232110-234220 7.87e-01 100 chrIV:721713-722829 3.62e-01 100 chrXIII:549874-553199 9.87e-01 100 chrXIV:442731-443277 8.91e-07 51_[+2(1.10e-09)]_20 chrIV:1507162-1507675 3.82e-01 100 chrVII:625129-625568 2.89e-01 100 chrII:36146-36641 3.98e-06 54_[+2(1.99e-08)]_17 chrXI:333701-334943 2.54e-01 100 chrV:311411-312297 3.32e-01 100 chrXI:551263-552390 8.84e-01 100 chrXV:663490-664140 7.79e-06 53_[-1(4.53e-10)]_21 chrIV:1359130-1360869 4.63e-01 100 chrXIII:540152-540979 3.33e-01 100 chrVII:561315-561958 9.66e-01 100 chrX:545368-545468 1.06e-01 100 chrXI:140739-141424 3.06e-01 100 chrVIII:62481-62964 2.24e-01 100 chrXIII:837701-838274 1.44e-04 46_[+1(4.73e-08)]_28 chrIV:76886-77334 7.70e-01 100 chrXIII:408126-408920 4.08e-01 100 chrII:350569-351129 6.21e-11 27_[+2(5.74e-07)]_10_[+1(6.49e-10)]_\ 8 chrVIII:296781-297256 5.94e-01 100 chrV:321889-323378 8.33e-01 100 chrVII:702570-703391 4.30e-02 49_[+3(6.97e-05)]_22 chrX:115533-115633 3.31e-01 100 chrXVI:435627-436217 1.67e-07 27_[-1(2.54e-07)]_10_[-2(1.43e-07)]_\ 8 chrXII:459614-460702 3.10e-01 100 chrVIII:103850-105892 2.68e-02 100 chrXIII:267655-268316 7.99e-01 100 chrIII:137723-139012 2.73e-01 100 chrI:189785-190674 1.38e-01 100 chrXII:1064018-1065391 3.62e-02 49_[+3(9.50e-05)]_22 chrXII:416692-416992 2.30e-01 100 chrXII:1011907-1012423 9.24e-01 100 chrVIII:134045-134581 1.79e-04 57_[+2(2.95e-07)]_14 chrIV:234152-234753 5.69e-01 100 chrXV:92149-94885 8.20e-01 100 chrX:227736-227836 6.50e-01 100 chrIV:520740-521460 8.97e-01 100 chrII:165014-165851 6.38e-01 100 chrII:604055-607114 4.37e-01 100 chrI:28313-28974 9.75e-01 100 chrXIV:567891-568486 4.62e-07 46_[+1(1.24e-10)]_28 chrX:415775-415875 2.16e-04 21_[-2(5.04e-06)]_50 chrXIV:444302-444810 1.83e-02 29_[-1(5.83e-05)]_45 chrX:378093-378193 7.60e-06 65_[+2(1.71e-09)]_6 chrIX:336103-336655 2.71e-07 26_[-1(6.41e-08)]_10_[-2(2.49e-06)]_\ 9 chrXII:921295-922614 7.37e-01 100 chrXVI:828850-829402 8.59e-01 100 chrV:492184-492574 8.73e-10 29_[-1(5.47e-09)]_11_[-2(1.43e-07)]_\ 5 chrII:415471-415886 3.33e-01 100 chrIV:568521-569273 2.81e-11 34_[+2(1.19e-07)]_10_[+1(8.16e-11)]_\ 1 chrIX:96656-97540 9.23e-01 100 chrIX:174798-175263 1.70e-06 50_[+2(2.59e-10)]_21 chrM:58261-58701 9.99e-01 100 chrV:85063-86903 6.25e-01 100 chrIV:1362023-1362700 4.24e-01 100 chrXII:489268-489670 4.00e-01 100 chrVII:999855-1000701 2.93e-01 100 chrXII:793699-797522 5.74e-01 100 chrXI:665521-666798 1.13e-10 26_[+3(1.02e-14)]_45 chrII:167747-169467 1.40e-01 100 chrVIII:115124-116432 9.26e-01 100 chrXIV:783321-784316 3.65e-03 50_[+2(5.70e-05)]_21 chrX:542779-542879 7.47e-01 100 chrVIII:236119-236820 1.77e-01 100 chrV:191996-192483 3.02e-01 100 chrXV:24514-25111 1.94e-01 100 chrXIII:768006-768668 9.96e-01 100 chrXIII:131509-132125 2.70e-07 64_[-1(8.16e-11)]_10 chrXIV:546940-547412 1.12e-07 37_[+1(1.24e-10)]_37 chrVII:648753-649413 2.36e-01 100 chrIII:168099-168623 6.54e-05 32_[-2(2.95e-07)]_39 chrVI:157703-158313 9.47e-07 20_[-2(1.99e-08)]_51 chrX:348811-348911 9.91e-01 100 chrVII:555181-557943 9.68e-02 1_[+1(9.77e-05)]_73 chrXIV:569681-570145 2.41e-17 10_[-1(6.30e-12)]_12_[-2(5.81e-12)]_\ 23 chrXVI:560013-560515 7.02e-07 46_[-2(1.99e-08)]_25 chrXII:903157-903660 1.81e-01 100 chrXVI:453486-453763 7.67e-01 100 chrIV:385893-387190 7.86e-01 100 chrXV:274437-275001 3.02e-17 3_[+2(5.91e-10)]_34_[+3(3.93e-14)]_\ 5 chrIV:1086888-1087383 8.56e-01 100 chrV:461680-462254 5.15e-01 100 chrXVI:404230-407808 8.78e-01 100 chrV:430984-431587 2.76e-02 100 chrXV:252864-254657 6.14e-01 100 chrIV:1450223-1451252 7.70e-01 100 chrXI:99280-100020 9.66e-03 53_[-2(1.27e-05)]_18 chrXVI:587097-587657 7.05e-01 100 chrXV:1025698-1026079 4.87e-01 100 chrV:435563-436040 4.71e-12 7_[-1(4.54e-11)]_11_[-2(1.24e-08)]_\ 27 chrXIII:753034-754969 5.89e-01 100 chrVII:16-1171 7.59e-01 100 chrXII:731891-732266 1.50e-07 61_[+2(2.18e-10)]_10 chrVII:345886-346677 4.80e-01 100 chrIV:644839-645384 8.67e-01 100 chrIX:129729-130185 1.30e-01 100 chrXV:925214-925421 1.03e-01 100 chrVII:661519-661987 5.26e-04 45_[+2(9.77e-08)]_26 chrXV:842407-842943 5.08e-01 100 chrIV:1401188-1403382 5.69e-01 100 chrI:229125-230193 2.15e-12 35_[+3(1.02e-14)]_36 chrXIII:258815-259496 8.72e-15 61_[-3(2.61e-18)]_10 chrI:182320-182791 6.48e-21 25_[-3(2.61e-18)]_15_[-2(1.28e-09)]_\ 2 chrXIII:388089-388632 9.96e-01 100 chrXIV:6491-7336 2.96e-02 15_[-2(9.45e-05)]_56 chrXI:463363-463774 1.23e-01 100 chrXI:578758-579299 1.46e-07 49_[+1(2.75e-10)]_25 chrX:422630-422730 2.12e-08 20_[+2(5.91e-08)]_11_[+1(6.41e-08)]_\ 14 chrVII:287102-287719 2.78e-03 66_[-2(5.04e-06)]_5 chrXV:438418-439040 6.48e-07 26_[+1(2.75e-10)]_48 chrVII:364900-366721 3.00e-01 100 chrXVI:768978-769521 1.46e-07 14_[-1(2.75e-10)]_60 chrV:135151-135717 1.07e-07 47_[-1(4.54e-11)]_27 chrXV:520386-521054 8.94e-01 100 chrX:607799-607899 2.91e-01 100 chrXI:307983-308443 1.97e-05 25_[-2(1.71e-09)]_46 chrIX:68170-69610 8.39e-01 100 chrV:221458-221806 2.90e-01 100 chrVI:210433-211107 8.54e-01 100 chrIV:411218-411697 1.27e-01 100 chrVIII:455334-456039 5.50e-01 100 chrXVI:701869-702352 4.74e-01 100 chrXVI:377924-379023 8.53e-01 100 chrXI:381937-382485 4.92e-01 100 chrXIII:91048-91346 2.49e-02 19_[+2(5.95e-05)]_52 chrXV:487216-487683 1.25e-05 39_[+2(3.01e-09)]_32 chrV:138417-141509 9.99e-01 100 chrIV:1256845-1257294 2.20e-04 31_[-2(7.87e-07)]_40 chrXVI:40154-40663 9.57e-01 100 chrXIII:91604-92104 3.80e-01 100 chrVII:787819-788794 3.03e-02 62_[-2(2.73e-05)]_9 chrIV:619687-620261 6.66e-06 51_[-1(5.47e-09)]_23 chrIV:992586-993082 3.55e-06 47_[+2(3.45e-09)]_24 chrV:396158-397984 6.13e-01 100 chrXVI:641074-641661 3.05e-02 70_[+2(2.13e-05)]_1 chrVII:185491-186032 8.39e-13 9_[-1(4.54e-11)]_11_[-2(1.24e-08)]_\ 25 chrV:241922-242616 2.54e-01 100 chrXIII:305902-307243 4.96e-01 100 chrIX:370216-370719 1.67e-06 38_[+1(1.42e-10)]_36 chrV:269198-270825 1.84e-01 100 chrVII:677840-678056 5.22e-01 100 chrVII:738841-739594 7.02e-01 100 chrXIII:861192-861538 9.11e-01 100 chrXIII:352060-352537 3.40e-06 31_[+2(1.99e-08)]_40 chrXI:518631-519225 3.77e-01 100 chrXIV:229438-230720 1.00e+00 100 chrXIV:776727-777142 9.56e-01 100 chrXII:605129-605845 3.71e-01 100 chrIX:427199-427806 3.29e-01 100 chrXII:673122-674441 9.59e-01 100 chrV:303954-307448 1.00e+00 100 chrX:139167-139267 2.12e-01 100 chrXI:258332-259508 6.83e-01 100 chrIV:1012821-1013966 5.11e-01 100 chrXII:448278-448991 2.17e-06 72_[-1(6.49e-10)]_2 chrVII:206152-206913 5.44e-01 100 chrXIV:560396-561166 3.32e-06 5_[-2(2.59e-10)]_66 chrVI:101066-101666 6.02e-06 59_[+2(2.28e-09)]_12 chrV:569380-570378 1.54e-09 1_[+3(4.32e-14)]_70 chrVIII:55341-55732 1.09e-01 66_[+2(9.45e-05)]_5 chrIV:129860-131000 6.54e-01 100 chrV:99812-100341 5.59e-01 100 chrXV:670972-671706 6.54e-01 100 chrXV:505025-505548 2.53e-01 100 chrIV:946131-946621 1.54e-04 41_[+1(4.73e-08)]_33 chrIV:490740-492596 9.86e-01 100 chrXI:313169-313699 7.18e-05 23_[-1(4.96e-07)]_51 chrXIII:5297-5825 1.88e-02 100 chrX:156215-156315 2.33e-01 100 chrXII:704202-704730 7.85e-01 100 chrXI:162319-162770 1.28e-04 35_[-2(1.19e-07)]_36 chrXII:426884-427430 2.71e-07 24_[+2(2.49e-06)]_10_[+1(6.41e-08)]_\ 11 chrIV:488457-489203 1.07e-11 23_[-1(3.54e-10)]_12_[-2(2.79e-08)]_\ 10 chrIX:210509-210982 2.02e-08 10_[+1(6.30e-12)]_64 chrIX:138042-139391 8.84e-01 100 chrXIII:279898-280347 1.84e-01 100 chrVIII:48158-48613 7.96e-01 100 chrXVI:188155-189080 1.53e-01 100 chrXIII:225299-226438 8.26e-01 100 chrXIV:602094-602562 2.41e-17 33_[+2(5.81e-12)]_12_[+1(6.30e-12)] chrXIII:797830-798275 2.40e-01 100 chrXI:614881-615165 5.62e-02 100 chrX:651162-651262 4.44e-01 100 chrI:138893-139811 8.70e-01 100 chrXIV:374654-375109 1.03e-06 37_[+2(1.24e-08)]_34 chrVII:73626-74249 1.06e-03 51_[+2(1.43e-06)]_20 chrVII:779358-779903 1.14e-10 35_[+2(2.95e-07)]_10_[+1(4.00e-10)] chrXII:11011-12047 1.48e-02 50_[-2(1.02e-05)]_21 chrVI:224433-225398 1.36e-01 100 chrIV:217047-218061 8.80e-01 100 chrIX:299997-300525 8.39e-13 23_[-1(4.54e-11)]_11_[-2(1.24e-08)]_\ 11 chrVII:323440-324135 5.33e-01 100 chrXV:979735-979971 9.25e-01 100 chrXV:216225-216749 1.53e-02 100 chrVII:823267-823720 1.88e-05 38_[+2(1.71e-09)]_33 chrXIV:758797-759965 3.53e-01 100 chrIV:1095130-1095686 1.39e-04 18_[-1(5.95e-08)]_56 chrV:438341-438982 9.37e-01 100 chrIX:438432-439886 4.95e-01 100 chrXV:605952-606564 9.99e-01 100 chrX:617755-617855 1.93e-01 100 chrIV:1305394-1306083 9.92e-01 100 chrXV:903657-904702 5.45e-01 100 chrV:487080-487639 3.97e-07 28_[-1(1.42e-10)]_46 chrXIV:662016-662481 3.51e-02 100 chrII:9361-9890 1.89e-11 7_[+2(1.71e-09)]_28_[-1(1.07e-07)]_\ 10 chrVII:959327-959658 8.81e-01 100 chrXIII:652014-652918 5.66e-01 100 chrXIII:309694-310033 5.35e-01 100 chrXII:592340-593108 4.04e-01 100 chrIV:1150394-1151191 8.43e-01 100 chrXVI:678703-679390 7.61e-02 100 chrIII:177045-178793 2.65e-01 100 chrIV:229418-230769 7.50e-01 100 chrXIV:493893-495662 6.81e-01 100 chrXV:908501-909190 6.20e-01 100 chrX:197137-197237 1.89e-08 17_[-2(5.81e-12)]_54 chrIV:550953-551565 8.26e-01 100 chrIV:1161482-1162055 2.25e-02 6_[-1(6.23e-05)]_68 chrII:140483-140833 7.50e-01 100 chrIX:248615-249545 3.27e-01 100 chrXV:353886-354341 3.18e-06 21_[-2(2.59e-10)]_50 chrXI:83945-84457 1.25e-06 56_[+2(1.71e-09)]_15 chrXVI:743951-744666 3.56e-08 25_[+2(9.77e-08)]_10_[+1(2.71e-07)]_\ 10 chrXV:167929-168507 2.97e-01 100 chrV:551032-551592 4.96e-19 29_[-1(6.30e-12)]_12_[-2(5.81e-12)]_\ 4 chrX:90013-90113 8.00e-01 100 chrXV:300834-301417 6.02e-06 21_[+2(2.28e-09)]_50 chrIII:292697-293003 9.86e-01 100 chrV:207068-207634 6.83e-02 100 chrIV:975871-976815 1.11e-01 100 chrXVI:810436-810886 1.56e-06 64_[+2(3.01e-09)]_7 chrXVI:209958-210516 3.97e-07 11_[-1(1.42e-10)]_63 chrIX:254197-254604 6.29e-01 100 chrXVI:55848-56531 1.28e-04 36_[-1(3.19e-08)]_38 chrVII:919808-920385 9.80e-01 100 chrVII:989782-990457 9.03e-01 100 chrI:81875-82365 3.62e-01 100 chrVII:1004005-1004423 4.26e-04 51_[+2(9.77e-08)]_20 chrII:300998-301761 4.25e-01 100 chrXV:4-1024 5.45e-01 100 chrI:198405-198800 8.71e-01 100 chrVII:930805-931239 4.46e-06 22_[-2(3.45e-09)]_49 chrIV:1524139-1525677 6.75e-01 100 chrXI:617720-619284 8.19e-01 100 chrV:377859-378229 5.27e-01 100 chrXI:490724-491335 6.40e-06 28_[+1(5.47e-09)]_46 chrII:347377-347897 1.89e-11 15_[+2(1.71e-09)]_28_[-1(1.07e-07)]_\ 2 chrVII:412100-412598 3.22e-12 1_[-1(4.53e-10)]_12_[-2(1.71e-09)]_\ 32 chrXV:980468-981047 5.27e-07 47_[+1(1.24e-10)]_27 chrXIII:296726-298937 8.33e-01 100 chrXV:1027719-1029250 5.14e-02 100 chrXII:611567-612107 3.71e-01 100 chrII:644940-645438 3.97e-07 66_[+1(1.42e-10)]_8 chrX:18785-18885 2.66e-01 100 chrIV:306673-310207 6.14e-01 100 chrXIII:372191-372739 7.31e-06 36_[-1(4.53e-10)]_38 chrIII:78255-78744 9.65e-01 100 chrXVI:785696-786651 5.94e-01 100 chrXII:86903-87194 3.65e-01 100 chrVII:726256-728090 6.43e-01 100 chrX:223901-224001 9.90e-01 100 chrIV:221387-222361 8.58e-01 100 chrX:355117-355217 2.94e-08 29_[+1(8.16e-11)]_45 chrII:592366-593311 6.71e-01 100 chrVIII:358289-358810 9.47e-07 41_[-2(1.99e-08)]_30 chrVII:531412-531806 7.62e-05 50_[+2(2.49e-06)]_21 chrVII:968833-969224 1.43e-01 100 chrXV:464229-464721 6.02e-06 24_[+2(2.28e-09)]_47 chrXIV:104557-105133 4.15e-12 9_[+2(2.59e-10)]_11_[+1(2.45e-09)]_\ 25 chrV:18598-19302 3.25e-01 100 chrX:390826-390926 9.44e-01 100 chrVII:271566-272170 1.15e-01 100 chrIV:1278608-1279133 1.88e-01 100 chrIV:980736-981271 8.14e-15 29_[-3(2.61e-18)]_42 chrXI:355229-356443 8.39e-01 100 chrXV:340130-340598 1.71e-04 28_[-2(1.43e-07)]_43 chrX:701738-701838 9.96e-01 100 chrVII:700185-701276 1.66e-05 2_[+2(1.65e-05)]_22_[+3(2.10e-05)]_\ 18 chrIV:599567-600321 2.82e-01 100 chrXIV:88907-90100 3.32e-01 100 chrX:58926-59026 9.15e-01 100 chrXIV:559259-559551 9.81e-01 100 chrIX:323963-324634 1.92e-04 61_[-1(6.41e-08)]_13 chrX:73334-73434 4.16e-01 100 chrVI:226411-226969 8.93e-08 54_[-1(4.54e-11)]_20 chrIII:107086-107855 1.92e-01 100 chrVII:1050170-1050654 9.35e-07 58_[+3(1.99e-10)]_13 chrXV:226448-226889 9.15e-07 34_[-2(3.45e-09)]_37 chrXI:108697-110139 7.91e-03 15_[+3(7.84e-05)]_56 chrXIII:761149-763025 8.56e-01 100 chrXI:7855-8235 8.62e-01 100 chrXIII:731465-733482 9.44e-01 100 chrXII:628144-628664 1.83e-06 28_[+2(1.10e-09)]_43 chrXIII:253220-253595 7.18e-01 100 chrX:120306-120406 4.46e-01 100 chrII:812972-813182 1.94e-02 100 chrXVI:214314-215268 1.41e-01 100 chrXVI:338691-339151 9.42e-02 100 chrIV:1354620-1356206 1.16e-01 68_[-3(9.87e-05)]_3 chrV:130842-131431 1.10e-10 2_[-1(9.19e-10)]_10_[-2(5.74e-07)]_\ 33 chrIX:1-263 7.63e-01 100 chrXIV:301632-302491 3.89e-01 100 chrXI:158156-159595 9.92e-01 100 chrXVI:880094-880585 2.41e-17 13_[-1(6.30e-12)]_12_[-2(5.81e-12)]_\ 20 chrIX:177536-178178 7.25e-02 100 chrXI:219583-220129 8.79e-01 100 chrIV:591704-592142 2.78e-02 100 chrV:67116-69512 8.68e-01 100 chrV:362115-363258 4.79e-01 100 chrXII:92239-92868 6.02e-06 44_[+2(2.28e-09)]_27 chrXIV:739307-739687 4.72e-01 100 chrVIII:466738-467311 2.39e-08 15_[+2(9.77e-08)]_10_[+1(1.14e-07)]_\ 20 chrXV:901422-901679 7.68e-01 100 chrXIV:241077-241770 4.10e-01 100 chrV:354686-355394 4.45e-01 100 chrX:523830-523930 7.10e-07 14_[-2(1.28e-09)]_57 chrXII:1017684-1019432 4.74e-01 100 chrIV:519531-519973 4.47e-07 40_[+2(1.71e-09)]_31 chrVI:204739-205234 3.88e-09 31_[-2(5.81e-12)]_40 chrVIII:555917-557214 1.82e-01 100 chrI:5-1142 2.85e-12 17_[-3(1.02e-14)]_54 chrXIV:426853-427269 7.01e-01 100 chrIV:357207-358457 3.67e-02 100 chrIX:98542-100125 9.53e-01 100 chrXV:988238-988759 8.28e-02 100 chrXIV:675801-676016 3.46e-01 100 chrII:408615-408965 4.69e-01 100 chrXII:241534-243538 9.88e-01 100 chrIV:434012-434574 4.51e-12 27_[-1(2.45e-09)]_11_[-2(2.59e-10)]_\ 7 chrXIV:351647-352784 9.98e-01 100 chrXII:855555-857603 4.38e-01 100 chrXII:687667-688183 6.29e-06 28_[-2(1.71e-09)]_43 chrIX:197328-197976 1.02e-06 28_[+1(6.11e-11)]_46 chrII:642827-643348 5.76e-04 12_[-2(1.43e-07)]_59 chrIV:410159-410703 2.52e-06 37_[+1(9.19e-10)]_37 chrIV:83286-83834 1.57e-06 37_[+2(3.45e-09)]_34 chrXIII:170078-170657 8.83e-01 100 chrV:250106-250920 9.93e-01 100 chrVIII:388642-389218 5.87e-07 19_[-1(1.24e-10)]_55 chrXII:366005-366598 5.86e-01 100 chrV:42064-42535 6.07e-01 100 chrX:233686-233786 9.29e-11 19_[+2(1.43e-07)]_11_[+1(9.19e-10)]_\ 15 chrVI:162001-162494 6.33e-13 30_[+2(3.45e-09)]_9_[+1(1.63e-10)]_\ 6 chrIV:802540-803027 3.33e-11 4_[-1(6.49e-10)]_10_[-2(2.95e-07)]_\ 31 chrXVI:689357-689895 1.09e-09 32_[+3(2.44e-13)]_39 chrXV:407621-408147 4.75e-02 100 chrXIII:914999-915888 9.95e-02 100 chrXIII:145760-146347 6.01e-01 100 chrX:606225-606325 2.70e-01 100 chrI:166035-166608 1.78e-07 35_[+1(3.90e-11)]_39 chrV:225435-225736 6.69e-01 100 chrX:541302-541402 2.71e-07 17_[+2(2.49e-06)]_10_[+1(6.41e-08)]_\ 18 chrIV:538850-539296 2.13e-01 100 chrXVI:571977-572589 8.13e-13 35_[+2(3.45e-09)]_9_[+1(1.63e-10)]_\ 1 chrII:373124-376385 4.31e-01 100 chrVII:828482-829006 5.38e-11 35_[-1(8.16e-11)]_10_[-2(1.19e-07)] chrXIII:826552-826862 7.43e-01 100 chrXVI:566954-567150 2.45e-02 20_[+3(3.27e-05)]_51 chrXVI:113889-114927 6.77e-01 100 chrVII:422873-423505 6.96e-01 100 chrVII:576428-577274 6.55e-01 100 chrIV:1080441-1081000 8.06e-01 100 chrXI:1-1079 3.12e-10 56_[-3(4.32e-14)]_15 chrII:378801-379145 3.14e-01 100 chrXVI:645287-646278 9.90e-01 100 chrXI:163250-164409 8.25e-02 100 chrXII:734699-735075 9.94e-08 5_[+1(6.30e-12)]_69 chrXV:594201-594687 2.50e-04 2_[-2(1.89e-07)]_69 chrXII:423963-424594 4.24e-01 100 chrVIII:521890-522296 6.56e-02 25_[-2(8.71e-05)]_46 chrVIII:16647-17854 9.58e-01 100 chrV:53443-54021 6.72e-01 100 chrVIII:34480-36329 1.03e-04 18_[-2(2.66e-06)]_53 chrXV:1053915-1054333 1.82e-01 100 chrXII:198665-199733 5.24e-01 100 chrVII:766013-766573 5.79e-02 100 chrXIV:585493-586634 9.98e-01 100 chrVIII:374937-375707 2.42e-01 100 chrXII:5438-5953 5.89e-02 100 chrXV:109432-110653 4.19e-01 100 chrXII:656711-657193 2.05e-06 38_[-1(9.19e-10)]_36 chrVII:319590-320149 2.43e-04 [+1(4.96e-07)]_74 chrXVI:66946-67363 5.31e-02 100 chrVII:609283-610412 7.55e-01 100 chrV:77487-79481 4.86e-01 100 chrVII:205291-205922 6.39e-01 100 chrVII:533537-535229 6.27e-01 100 chrXIII:183756-184206 5.53e-06 8_[-2(3.45e-09)]_63 chrXV:228044-228592 6.28e-06 62_[+2(3.01e-09)]_9 chrVII:951370-951705 2.63e-03 30_[+3(1.37e-05)]_41 chrXII:214642-215172 1.20e-15 32_[-1(3.90e-11)]_11_[-2(3.63e-10)]_\ 2 chrXI:230464-231727 9.15e-01 100 chrVII:440496-443137 8.94e-01 100 chrXIII:572699-573309 3.20e-01 100 chrXV:288014-288533 2.65e-04 24_[+1(4.73e-08)]_50 chrX:374210-374310 2.53e-12 22_[-1(8.16e-11)]_10_[-2(1.19e-07)]_\ 13 chrXIII:586403-586915 8.20e-12 33_[-1(4.53e-10)]_12_[-2(1.71e-09)] chrVIII:505781-506231 7.75e-01 100 chrXI:430471-431749 7.25e-01 100 chrXV:161064-162079 5.11e-01 100 chrXV:110839-111292 2.90e-01 100 chrXI:614149-614435 2.79e-01 100 chrXI:302647-303243 2.60e-03 22_[+2(5.04e-06)]_49 chrVII:115241-115781 5.89e-06 26_[+2(9.73e-09)]_45 chrIV:1488893-1490500 2.30e-02 100 chrV:490908-491577 1.04e-03 31_[-3(1.10e-05)]_40 chrX:424266-424366 9.69e-07 31_[-2(1.71e-09)]_40 chrXI:379443-379927 8.68e-06 44_[+2(1.71e-09)]_27 chrII:135898-136433 1.89e-02 100 chrV:441758-442679 5.12e-01 100 chrXIII:434198-434568 5.98e-01 100 chrX:396556-396656 4.46e-06 21_[-2(3.45e-09)]_50 chrVII:483262-483717 2.56e-03 42_[+1(9.18e-07)]_32 chrVII:845315-845918 7.14e-01 100 chrIII:294971-295856 2.78e-01 100 chrVIII:237692-238313 9.82e-01 100 chrX:745013-745113 7.89e-01 100 chrII:476821-477781 7.23e-01 100 chrXV:281865-282480 5.64e-06 41_[+2(3.45e-09)]_30 chrXII:780754-781905 3.99e-01 100 chrVIII:475488-475909 7.13e-07 64_[-1(1.63e-10)]_10 chrIV:579007-580758 3.65e-01 100 chrIX:325488-326088 4.51e-12 9_[+2(2.59e-10)]_11_[+1(2.45e-09)]_\ 25 chrXII:677837-678017 7.36e-01 100 chrIV:1233803-1233991 6.33e-01 100 chrXIV:716026-716637 8.71e-01 100 chrVII:1083250-1084372 9.00e-01 100 chrXII:759068-759359 3.90e-01 100 chrIV:541221-541920 8.06e-01 100 chrXII:498448-499693 1.76e-01 100 chrXII:712838-713628 2.86e-01 100 chrV:123207-123400 8.14e-07 68_[+3(1.91e-10)]_3 chrIX:332676-333162 3.34e-03 10_[+3(2.77e-06)]_61 chrXV:159269-160725 1.69e-01 100 chrXIV:102489-102979 1.01e-09 31_[+2(3.01e-09)]_12_[+1(8.60e-08)]_\ 2 chrXV:709991-710494 9.21e-05 47_[+1(3.92e-07)]_27 chrXIII:923218-924367 4.60e-10 28_[+3(2.64e-13)]_43 chrIII:29574-31189 6.20e-01 100 chrI:180902-181495 4.59e-01 100 chrVIII:410994-411766 3.60e-01 100 chrIX:388164-388549 9.97e-01 100 chrIII:142154-142987 1.96e-01 100 chrII:392471-392833 8.55e-02 100 chrV:422759-425358 3.26e-01 100 chrXIII:419902-420883 8.01e-01 100 chrVIII:150726-151262 1.09e-01 100 chrX:293723-293823 6.11e-01 100 chrXII:962758-963385 3.81e-08 5_[-2(1.71e-09)]_26_[-3(4.29e-05)]_\ 11 chrXI:45981-47011 5.78e-01 100 chrXIII:378897-379626 1.73e-01 100 chrIX:386565-386993 7.52e-01 100 chrIX:255066-258241 8.75e-01 100 chrXVI:502454-503246 5.45e-01 100 chrXIV:96043-96632 3.55e-02 28_[+2(1.49e-05)]_43 chrXV:976175-976893 8.77e-01 100 chrXV:876786-878001 3.28e-01 100 chrVII:544396-546091 4.93e-01 100 chrVI:180663-181254 3.02e-07 72_[-1(1.63e-10)]_2 chrII:504493-504911 9.54e-01 100 chrXV:866483-868118 9.70e-01 100 chrX:204467-204567 1.34e-02 45_[+2(2.49e-06)]_26 chrXIII:431696-432125 3.75e-01 100 chrVIII:451259-453099 5.20e-01 100 chrXIV:209890-210239 2.08e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************