******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--PDR1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:3-1368 1.0000 100 chrI:81858-82309 1.0000 100 chrI:138907-139452 1.0000 100 chrI:141589-143696 1.0000 100 chrI:166026-166786 1.0000 100 chrI:180962-181502 1.0000 100 chrI:182337-183184 1.0000 100 chrI:229103-230192 1.0000 100 chrII:6058-7144 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chrXV:407809-408205 1.0000 100 chrXV:424353-424743 1.0000 100 chrXV:425019-425765 1.0000 100 chrXV:438392-439204 1.0000 100 chrXV:444596-446184 1.0000 100 chrXV:463799-464693 1.0000 100 chrXV:487203-487707 1.0000 100 chrXV:504979-505517 1.0000 100 chrXV:571578-572225 1.0000 100 chrXV:594137-594702 1.0000 100 chrXV:618750-624720 1.0000 100 chrXV:663535-664489 1.0000 100 chrXV:677881-679306 1.0000 100 chrXV:709973-710683 1.0000 100 chrXV:724800-725598 1.0000 100 chrXV:779683-780965 1.0000 100 chrXV:796949-797812 1.0000 100 chrXV:832280-832808 1.0000 100 chrXV:853999-854430 1.0000 100 chrXV:866533-867224 1.0000 100 chrXV:882104-882818 1.0000 100 chrXV:901459-901771 1.0000 100 chrXV:903940-905149 1.0000 100 chrXV:925221-925409 1.0000 100 chrXV:967915-968496 1.0000 100 chrXV:976187-976761 1.0000 100 chrXV:977957-979147 1.0000 100 chrXV:980479-981389 1.0000 100 chrXV:1003897-1005003 1.0000 100 chrXV:1025284-1026230 1.0000 100 chrXV:1027537-1029137 1.0000 100 chrXVI:55695-56522 1.0000 100 chrXVI:75808-76745 1.0000 100 chrXVI:135336-135855 1.0000 100 chrXVI:172828-174134 1.0000 100 chrXVI:188610-189043 1.0000 100 chrXVI:209554-210748 1.0000 100 chrXVI:280649-282806 1.0000 100 chrXVI:302536-303857 1.0000 100 chrXVI:338262-339437 1.0000 100 chrXVI:352255-352858 1.0000 100 chrXVI:377875-378490 1.0000 100 chrXVI:378664-379034 1.0000 100 chrXVI:404516-405859 1.0000 100 chrXVI:406133-407779 1.0000 100 chrXVI:425125-425548 1.0000 100 chrXVI:435620-436539 1.0000 100 chrXVI:515119-517137 1.0000 100 chrXVI:520159-520672 1.0000 100 chrXVI:559984-560519 1.0000 100 chrXVI:571908-572849 1.0000 100 chrXVI:575174-575607 1.0000 100 chrXVI:581687-582415 1.0000 100 chrXVI:622274-622820 1.0000 100 chrXVI:645263-645949 1.0000 100 chrXVI:653812-655031 1.0000 100 chrXVI:689305-689884 1.0000 100 chrXVI:699902-700741 1.0000 100 chrXVI:701856-702401 1.0000 100 chrXVI:718337-719394 1.0000 100 chrXVI:731651-732388 1.0000 100 chrXVI:744042-744759 1.0000 100 chrXVI:768550-768780 1.0000 100 chrXVI:768952-769513 1.0000 100 chrXVI:775628-776294 1.0000 100 chrXVI:794365-796133 1.0000 100 chrXVI:810427-811032 1.0000 100 chrXVI:819319-819827 1.0000 100 chrXVI:856743-857331 1.0000 100 chrXVI:859282-860645 1.0000 100 chrXVI:880068-880898 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--PDR1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--PDR1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--PDR1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 589 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 58900 N= 589 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.307 C 0.193 G 0.193 T 0.307 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--PDR1/background): A 0.318 C 0.182 G 0.182 T 0.318 ******************************************************************************** ******************************************************************************** MOTIF ATCNGRAGRTCVBSGGTTCGAHYCCSVBHG MEME-1 width = 30 sites = 80 llr = 1732 E-value = 1.0e-393 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATCNGRAGRTCVBSGGTTCGAHYCCSVBHG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 9::2258:51:4:13::::2a2::1:3:31 pos.-specific C 13731::1:184341:::a::26a654241 probability G :23355285::2356a:::8:2::1534:5 matrix T 16:221:1:81:4:1:aa:::44:3::432 bits 2.5 * * 2.2 * * * 2.0 * * * 1.7 * * ** * * Relative 1.5 * * ****** * Entropy 1.2 * * * ****** * * (31.2 bits) 1.0 * * ***** * ****** ** * 0.7 * * ****** ******** ***** 0.5 *** **************** ****** * 0.2 *** ***************** ******** 0.0 ------------------------------ Multilevel ATCGGAAGGTCCTGGGTTCGATCCCCCGCG consensus CGCTGG A AGCA A AT TGGTAT sequence A GC C ACT T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCNGRAGRTCVBSGGTTCGAHYCCSVBHG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXVI:819319-819827 + 44 8.08e-14 CGTGCTAATA ACGCGGGGATCAGCGGTTCGATCCCGCTAG AGACCATTTA chrXIV:602207-602547 + 23 8.08e-14 CGTGCTAATA ACGCGGGGATCAGCGGTTCGATCCCGCTAG AGACCATTCT chrXIV:569577-570144 - 63 8.08e-14 TGCTAATA ACGCGGGGATCAGCGGTTCGATCCCGCTAG AGACCATTCT chrXII:734694-734997 + 45 8.08e-14 CGTGCTAATA ACGCGGGGATCAGCGGTTCGATCCCGCTAG AGACCATTTA chrV:550969-551656 - 29 8.08e-14 CGTGCTAATA ACGCGGGGATCAGCGGTTCGATCCCGCTAG AGACCAATTT chrV:442862-443530 - 62 8.08e-14 GTGCTAATA ACGCGGGGATCAGCGGTTCGATCCCGCTAG AGACCATATT chrIX:210501-210944 + 31 8.08e-14 CGTGCTAATA ACGCGGGGATCAGCGGTTCGATCCCGCTAG AGACCATATT chrII:197152-197883 + 65 8.08e-14 CGTGCTAATA ACGCGGGGATCAGCGGTTCGATCCCGCTAG AGACCA chrIII:123408-123810 - 24 6.81e-13 TCGCTTAGGG TGCGGGAGGTCCCGGGTTCGAGTCCCGGCT CGCCCCACAT chrX:355086-355770 + 32 1.41e-12 CTGACTTCTA ATCAGAAGATTATGGGTTCGACCCCCATCG TGAGTGCTTT chrVII:828452-829026 - 40 1.41e-12 CTGACTTCTA ATCAGAAGATTATGGGTTCGACCCCCATCG TGAGTGCTTT chrVII:405300-405795 + 9 1.41e-12 GACTTCTA ATCAGAAGATTATGGGTTCGACCCCCATCG TGAGTGCTTT chrXV:853999-854430 - 29 3.22e-12 TTCCCTTGCA AGGAAGAGGTCATCGGTTCGATTCCGGTTG CGTCCAATTT chrXII:214654-215185 - 20 3.22e-12 TTCCCTTGCA AGGAAGAGGTCATCGGTTCGATTCCGGTTG CGTCCATTTA chrV:311790-312304 - 32 3.22e-12 TTCCCTTGCA AGGAAGAGGTCATCGGTTCGATTCCGGTTG CGTCCAATGA chrXI:46495-47016 - 36 6.17e-12 CGCACTCGTA ATGCGGGGATCGTGGGTTCAATTCCCACAG AGGGCATTTG chrXIII:420313-420921 - 27 1.29e-11 CTGCTTAACA CGCAGAACGTCCCCAGTTCGATCCTGGGCG AAATCATTTT chrXIII:372176-372745 - 41 1.29e-11 CTGCTTAACA CGCAGAACGTCCCCAGTTCGATCCTGGGCG AAATCATTTT chrXI:379499-379928 + 55 1.29e-11 CTGCTTAACA CGCAGAACGTCCCCAGTTCGATCCTGGGCG AAATCAATTA chrXI:202834-203318 + 10 1.29e-11 TGACTCTTA ATCATAAGGTTAGGGGTTCGAGCCCCCTAC AGGGCTTTCT chrX:414782-415318 + 3 1.29e-11 TA ATCATAAGGTTAGGGGTTCGAGCCCCCTAC AGGGCTAATA chrVIII:85032-85585 - 46 1.29e-11 CTGCTTAACA CGCAGAACGTCCCCAGTTCGATCCTGGGCG AAATCAATTT chrVI:226476-226994 - 9 1.29e-11 ATGACTCTTA ATCATAAGGTTAGGGGTTCGAGCCCCCTAC AGGGCTTA chrV:469234-469786 + 35 1.29e-11 CTGCTTAACA CGCAGAACGTCCCCAGTTCGATCCTGGGCG AAATCATTTT chrV:135172-135725 - 33 1.29e-11 ATGACTCTTA ATCATAAGGTTAGGGGTTCGAGCCCCCTAC AGGGCTTTCT chrIX:299836-300639 - 47 1.29e-11 ATGACTCTTA ATCATAAGGTTAGGGGTTCGAGCCCCCTAC AGGGCTATCT chrIV:1201234-1202416 + 12 1.29e-11 ATGACTCTTA ATCATAAGGTTAGGGGTTCGAGCCCCCTAC AGGGCTAATA chrXVI:768952-769513 - 31 1.45e-11 AAGCAAGGAT ACCGAAATGTCAGGGGTTCGAGCCCCCTAT GAGGAGTTCT chrXII:875208-875675 + 45 1.45e-11 AAGCAAGGAT ACCGAAATGTCAGGGGTTCGAGCCCCCTAT GAGGAGTTCT chrXI:578751-579305 + 47 1.45e-11 AAGCAAGGAT ACCGAAATGTCAGGGGTTCGAGCCCCCTAT GAGGAGTTCT chrVII:115202-115951 + 22 1.45e-11 AAGCAAGGAT ACCGAAATGTCAGGGGTTCGAGCCCCCTAT GAGGAGTTCT chrIV:1094960-1095795 - 49 1.63e-11 TGGTCAAGAT ATCTGGAGGTCCTGTGTTCGATCCACAGAG TTCGCATTTT chrXIV:104617-105150 + 9 2.06e-11 CACTAGTA ATGTGGAGATCATCGGTTCAAATCCGATTG GAAGCATATT chrX:58646-59618 - 24 2.06e-11 CACACTAGTA ATGTGGAGATCATCGGTTCAAATCCGATTG GAAGCATATA chrIX:325499-326111 + 30 2.06e-11 CACACTAGTA ATGTGGAGATCATCGGTTCAAATCCGATTG GAAGCAATTT chrIX:174761-175346 + 65 2.06e-11 CACACTAGTA ATGTGGAGATCATCGGTTCAAATCCGATTG GAAGCA chrXIII:807997-808559 - 24 2.30e-11 TTCGGTTCTG ATCCGAACAACCCCAGTTCGAATCCGGGTG GGACCTTCCC chrIV:802478-803037 - 30 2.58e-11 TTCGGTTTTG ATCCGGACAACCCCGGTTCGAATCCGGGTA GGACCTCTTT chrIV:644933-645395 - 45 2.58e-11 TTCGGTTTTG ATCCGGACAACCCCGGTTCGAATCCGGGTA GGACCTTTTT chrIII:168091-168620 - 2 2.58e-11 TTCGGTTTTG ATCCGGACAACCCCGGTTCGAATCCGGGTA G chrII:350545-351244 + 19 2.58e-11 TTCGGTTTTG ATCCGGACAACCCCGGTTCGAATCCGGGTA AGACCTTATT chrV:130781-131398 - 49 4.48e-11 TTCGGTTTTG ATCCGAACAACCCCGGTTCGAATCCGGGTA AGACCTATTT chrXV:976187-976761 + 34 5.55e-11 CAGTCTCATA ATCTGAAGGTCGAGAGTTCGAACCTCCCCT GGAGCAATAT chrXV:226292-226928 - 57 5.55e-11 CAACGTTGCC ATCGTTGGGCCCCCGGTTCGATTCCGGGCT TGCGCAAATT chrXIII:183701-184178 - 15 5.55e-11 CAACGTTGCC ATCGTTGGGCCCCCGGTTCGATTCCGGGCT TGCGCATATT chrX:390747-391319 - 66 5.55e-11 TCATA ATCTGAAGGTCGAGAGTTCGAACCTCCCCT GGAGCATATT chrVI:180665-181392 - 2 5.55e-11 CAACGTTGCC ATCGTTGGGCCCCCGGTTCGATTCCGGGCT T chrIV:1175529-1176209 + 47 5.55e-11 CAGTCTCATA ATCTGAAGGTCGAGAGTTCGAACCTCCCCT GGAGCATTTT chrIV:488490-489140 - 38 6.16e-11 CGCCTTTACA CGGCGAAGATCCCGAGTTCGAACCTCGGTT GGATCAGAAT chrXVI:810427-811032 + 35 6.85e-11 GCGACTGTTA ATCGCAAGATCGTGAGTTCAACCCTCACTG GGGTCGTATT chrXIV:632398-632952 + 12 6.85e-11 GCGACTGTTA ATCGCAAGATCGTGAGTTCAACCCTCACTG GGGTCGTTTT chrXIV:102486-103073 + 25 6.85e-11 GCGACTGTTA ATCGCAAGATCGTGAGTTCAACCCTCACTG GGGTCGTTTA chrXII:975690-976281 - 54 6.85e-11 GCGACTGTTA ATCGCAAGATCGTGAGTTCAACCCTCACTG GGGTCGTTTA chrXI:74377-74956 + 46 6.85e-11 GCGACTGTTA ATCGCAAGATCGTGAGTTCAACCCTCACTG GGGTCGCTTA chrVII:730904-731444 + 51 6.85e-11 GCGACTGTTA ATCGCAAGATCGTGAGTTCAACCCTCACTG GGGTCGTTTT chrVI:137137-137929 - 9 6.85e-11 GCGACTGTTA ATCGCAAGATCGTGAGTTCAACCCTCACTG GGGTCGTT chrIII:127507-127968 + 67 6.85e-11 GCGACTGTTA ATCGCAAGATCGTGAGTTCAACCCTCACTG GGGT chrIV:1075282-1075766 - 4 8.42e-11 TGCCTTCACA CGGCAAAGGTCCCGAGTTCGATCCTCGGTT GGA chrXVI:622274-622820 - 49 1.26e-10 CGGTCAAGTT ATCTGGAGGTCCTGTGTTCGATCCACAGAA TTCGCATTTA chrXVI:559984-560519 - 3 1.26e-10 CGGTCAAGTT ATCTGGAGGTCCTGTGTTCGATCCACAGAA TT chrVIII:358216-358849 - 2 1.26e-10 CGGTCAAGTT ATCTGGAGGTCCTGTGTTCGATCCACAGAA T chrXIII:837598-838415 + 25 2.25e-10 CCACTACGAA ATCTTGAGATCGGGCGTTCGACTCGCCCCC GGGAGATATT chrVI:210425-210894 - 16 2.25e-10 CCACTACGAA ATCTTGAGATCGGGCGTTCGACTCGCCCCC GGGAGATATT chrVI:167249-167698 + 67 2.25e-10 CCACTACGAA ATCTTGAGATCGGGCGTTCGACTCGCCCCC GGGA chrIV:946143-946667 + 10 2.25e-10 CACTACGAA ATCTTGAGATCGGGCGTTCGACTCGCCCCC GGGAGATTTT chrVII:541597-542192 + 42 3.27e-10 TCACGCTTTC ACCGTGGAGACCGGGGTTCGACTCCCCGTA TCGGAGTGTT chrV:176882-177455 + 17 3.27e-10 TCACGCTTTC ACCGTGGAGACCGGGGTTCGACTCCCCGTA TCGGAGTACT chrXIV:546942-547380 + 50 4.68e-10 AGACAAAGCA TGCGAGAGGCCCTGGGTTCAATTCCCAGCT CGCCCCGTTA chrXVI:338262-339437 - 55 1.52e-09 AGGGCTCATA ACCCTGATGTCCTCGGATCGAAACCGAGCG GCGCTAAATT chrX:517490-518201 - 24 1.52e-09 AGGGCTCATA ACCCTGATGTCCTCGGATCGAAACCGAGCG GCGCTAAGCT chrVIII:466750-467284 + 59 1.52e-09 TGCACTTGTA ATGCAAAGGTCGCTAGTTCAATTCTGGCAG GTGGCATTAT chrXV:340073-340610 - 14 2.26e-09 CTGGCTACGA ACCAGAAGATTCCAGGTTCAAGTCCTGGCG GGGAAGATTT chrV:492129-492581 - 53 2.26e-09 CTGGCTACGA ACCAGAAGATTCCAGGTTCAAGTCCTGGCG GGGAAGGATT chrXIV:96007-96559 - 14 2.44e-09 CCACCCTTCC AAGGTGGGGACACGGGTTCGATTCTCGTAC CGCTCAAATT chrVII:661315-662340 + 8 2.84e-09 ACTTGTA ATGCAAAGGTCGTTAGTTCAATTCTGACAG GTGGCATAAT chrVI:204727-205191 - 21 4.11e-09 TCCCTTAGCA TGGGAGAGGTCTCCGGTTCGATTCCGGACT CGTCCATTTA chrIV:410131-410701 + 50 4.11e-09 TCCCTTAGCA TGGGAGAGGTCTCCGGTTCGATTCCGGACT CGTCCAAATT chrVII:706927-707349 - 26 5.10e-09 CAGATTGCAA ATCTGTTGGTCCTTAGTTCGATCCTGAGTG CGAGCTTTTT chrII:347382-347943 - 47 3.53e-08 AAAAAATATT ACTGAAGGATGCGAGGTTCGAACTCGCGCG GACAACCGTC chrII:9341-9910 - 64 3.53e-08 AAAAAAT ACTGAAGGATGCGAGGTTCGAACTCGCGCG GACAACCGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCNGRAGRTCVBSGGTTCGAHYCCSVBHG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:819319-819827 8.1e-14 43_[+1]_27 chrXIV:602207-602547 8.1e-14 22_[+1]_48 chrXIV:569577-570144 8.1e-14 62_[-1]_8 chrXII:734694-734997 8.1e-14 44_[+1]_26 chrV:550969-551656 8.1e-14 28_[-1]_42 chrV:442862-443530 8.1e-14 61_[-1]_9 chrIX:210501-210944 8.1e-14 30_[+1]_40 chrII:197152-197883 8.1e-14 64_[+1]_6 chrIII:123408-123810 6.8e-13 23_[-1]_47 chrX:355086-355770 1.4e-12 31_[+1]_39 chrVII:828452-829026 1.4e-12 39_[-1]_31 chrVII:405300-405795 1.4e-12 8_[+1]_62 chrXV:853999-854430 3.2e-12 28_[-1]_42 chrXII:214654-215185 3.2e-12 19_[-1]_51 chrV:311790-312304 3.2e-12 31_[-1]_39 chrXI:46495-47016 6.2e-12 35_[-1]_35 chrXIII:420313-420921 1.3e-11 26_[-1]_44 chrXIII:372176-372745 1.3e-11 40_[-1]_30 chrXI:379499-379928 1.3e-11 54_[+1]_16 chrXI:202834-203318 1.3e-11 9_[+1]_61 chrX:414782-415318 1.3e-11 2_[+1]_68 chrVIII:85032-85585 1.3e-11 45_[-1]_25 chrVI:226476-226994 1.3e-11 8_[-1]_62 chrV:469234-469786 1.3e-11 34_[+1]_36 chrV:135172-135725 1.3e-11 32_[-1]_38 chrIX:299836-300639 1.3e-11 46_[-1]_24 chrIV:1201234-1202416 1.3e-11 11_[+1]_59 chrXVI:768952-769513 1.4e-11 30_[-1]_40 chrXII:875208-875675 1.4e-11 44_[+1]_26 chrXI:578751-579305 1.4e-11 46_[+1]_24 chrVII:115202-115951 1.4e-11 21_[+1]_49 chrIV:1094960-1095795 1.6e-11 48_[-1]_22 chrXIV:104617-105150 2.1e-11 8_[+1]_62 chrX:58646-59618 2.1e-11 23_[-1]_47 chrIX:325499-326111 2.1e-11 29_[+1]_41 chrIX:174761-175346 2.1e-11 64_[+1]_6 chrXIII:807997-808559 2.3e-11 23_[-1]_47 chrIV:802478-803037 2.6e-11 29_[-1]_41 chrIV:644933-645395 2.6e-11 44_[-1]_26 chrIII:168091-168620 2.6e-11 1_[-1]_69 chrII:350545-351244 2.6e-11 18_[+1]_52 chrV:130781-131398 4.5e-11 48_[-1]_22 chrXV:976187-976761 5.5e-11 33_[+1]_37 chrXV:226292-226928 5.5e-11 56_[-1]_14 chrXIII:183701-184178 5.5e-11 14_[-1]_56 chrX:390747-391319 5.5e-11 65_[-1]_5 chrVI:180665-181392 5.5e-11 1_[-1]_69 chrIV:1175529-1176209 5.5e-11 46_[+1]_24 chrIV:488490-489140 6.2e-11 37_[-1]_33 chrXVI:810427-811032 6.8e-11 34_[+1]_36 chrXIV:632398-632952 6.8e-11 11_[+1]_59 chrXIV:102486-103073 6.8e-11 24_[+1]_46 chrXII:975690-976281 6.8e-11 53_[-1]_17 chrXI:74377-74956 6.8e-11 45_[+1]_25 chrVII:730904-731444 6.8e-11 50_[+1]_20 chrVI:137137-137929 6.8e-11 8_[-1]_62 chrIII:127507-127968 6.8e-11 66_[+1]_4 chrIV:1075282-1075766 8.4e-11 3_[-1]_67 chrXVI:622274-622820 1.3e-10 48_[-1]_22 chrXVI:559984-560519 1.3e-10 2_[-1]_68 chrVIII:358216-358849 1.3e-10 1_[-1]_69 chrXIII:837598-838415 2.3e-10 24_[+1]_46 chrVI:210425-210894 2.3e-10 15_[-1]_55 chrVI:167249-167698 2.3e-10 66_[+1]_4 chrIV:946143-946667 2.3e-10 9_[+1]_61 chrVII:541597-542192 3.3e-10 41_[+1]_29 chrV:176882-177455 3.3e-10 16_[+1]_54 chrXIV:546942-547380 4.7e-10 49_[+1]_21 chrXVI:338262-339437 1.5e-09 54_[-1]_16 chrX:517490-518201 1.5e-09 23_[-1]_47 chrVIII:466750-467284 1.5e-09 58_[+1]_12 chrXV:340073-340610 2.3e-09 13_[-1]_57 chrV:492129-492581 2.3e-09 52_[-1]_18 chrXIV:96007-96559 2.4e-09 13_[-1]_57 chrVII:661315-662340 2.8e-09 7_[+1]_63 chrVI:204727-205191 4.1e-09 20_[-1]_50 chrIV:410131-410701 4.1e-09 49_[+1]_21 chrVII:706927-707349 5.1e-09 25_[-1]_45 chrII:347382-347943 3.5e-08 46_[-1]_24 chrII:9341-9910 3.5e-08 63_[-1]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCNGRAGRTCVBSGGTTCGAHYCCSVBHG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATCNGRAGRTCVBSGGTTCGAHYCCSVBHG width=30 seqs=80 chrXVI:819319-819827 ( 44) ACGCGGGGATCAGCGGTTCGATCCCGCTAG 1 chrXIV:602207-602547 ( 23) ACGCGGGGATCAGCGGTTCGATCCCGCTAG 1 chrXIV:569577-570144 ( 63) ACGCGGGGATCAGCGGTTCGATCCCGCTAG 1 chrXII:734694-734997 ( 45) ACGCGGGGATCAGCGGTTCGATCCCGCTAG 1 chrV:550969-551656 ( 29) ACGCGGGGATCAGCGGTTCGATCCCGCTAG 1 chrV:442862-443530 ( 62) ACGCGGGGATCAGCGGTTCGATCCCGCTAG 1 chrIX:210501-210944 ( 31) ACGCGGGGATCAGCGGTTCGATCCCGCTAG 1 chrII:197152-197883 ( 65) ACGCGGGGATCAGCGGTTCGATCCCGCTAG 1 chrIII:123408-123810 ( 24) TGCGGGAGGTCCCGGGTTCGAGTCCCGGCT 1 chrX:355086-355770 ( 32) ATCAGAAGATTATGGGTTCGACCCCCATCG 1 chrVII:828452-829026 ( 40) ATCAGAAGATTATGGGTTCGACCCCCATCG 1 chrVII:405300-405795 ( 9) ATCAGAAGATTATGGGTTCGACCCCCATCG 1 chrXV:853999-854430 ( 29) AGGAAGAGGTCATCGGTTCGATTCCGGTTG 1 chrXII:214654-215185 ( 20) AGGAAGAGGTCATCGGTTCGATTCCGGTTG 1 chrV:311790-312304 ( 32) AGGAAGAGGTCATCGGTTCGATTCCGGTTG 1 chrXI:46495-47016 ( 36) ATGCGGGGATCGTGGGTTCAATTCCCACAG 1 chrXIII:420313-420921 ( 27) CGCAGAACGTCCCCAGTTCGATCCTGGGCG 1 chrXIII:372176-372745 ( 41) CGCAGAACGTCCCCAGTTCGATCCTGGGCG 1 chrXI:379499-379928 ( 55) CGCAGAACGTCCCCAGTTCGATCCTGGGCG 1 chrXI:202834-203318 ( 10) ATCATAAGGTTAGGGGTTCGAGCCCCCTAC 1 chrX:414782-415318 ( 3) ATCATAAGGTTAGGGGTTCGAGCCCCCTAC 1 chrVIII:85032-85585 ( 46) CGCAGAACGTCCCCAGTTCGATCCTGGGCG 1 chrVI:226476-226994 ( 9) ATCATAAGGTTAGGGGTTCGAGCCCCCTAC 1 chrV:469234-469786 ( 35) CGCAGAACGTCCCCAGTTCGATCCTGGGCG 1 chrV:135172-135725 ( 33) ATCATAAGGTTAGGGGTTCGAGCCCCCTAC 1 chrIX:299836-300639 ( 47) ATCATAAGGTTAGGGGTTCGAGCCCCCTAC 1 chrIV:1201234-1202416 ( 12) ATCATAAGGTTAGGGGTTCGAGCCCCCTAC 1 chrXVI:768952-769513 ( 31) ACCGAAATGTCAGGGGTTCGAGCCCCCTAT 1 chrXII:875208-875675 ( 45) ACCGAAATGTCAGGGGTTCGAGCCCCCTAT 1 chrXI:578751-579305 ( 47) ACCGAAATGTCAGGGGTTCGAGCCCCCTAT 1 chrVII:115202-115951 ( 22) ACCGAAATGTCAGGGGTTCGAGCCCCCTAT 1 chrIV:1094960-1095795 ( 49) ATCTGGAGGTCCTGTGTTCGATCCACAGAG 1 chrXIV:104617-105150 ( 9) ATGTGGAGATCATCGGTTCAAATCCGATTG 1 chrX:58646-59618 ( 24) ATGTGGAGATCATCGGTTCAAATCCGATTG 1 chrIX:325499-326111 ( 30) ATGTGGAGATCATCGGTTCAAATCCGATTG 1 chrIX:174761-175346 ( 65) ATGTGGAGATCATCGGTTCAAATCCGATTG 1 chrXIII:807997-808559 ( 24) ATCCGAACAACCCCAGTTCGAATCCGGGTG 1 chrIV:802478-803037 ( 30) ATCCGGACAACCCCGGTTCGAATCCGGGTA 1 chrIV:644933-645395 ( 45) ATCCGGACAACCCCGGTTCGAATCCGGGTA 1 chrIII:168091-168620 ( 2) ATCCGGACAACCCCGGTTCGAATCCGGGTA 1 chrII:350545-351244 ( 19) ATCCGGACAACCCCGGTTCGAATCCGGGTA 1 chrV:130781-131398 ( 49) ATCCGAACAACCCCGGTTCGAATCCGGGTA 1 chrXV:976187-976761 ( 34) ATCTGAAGGTCGAGAGTTCGAACCTCCCCT 1 chrXV:226292-226928 ( 57) ATCGTTGGGCCCCCGGTTCGATTCCGGGCT 1 chrXIII:183701-184178 ( 15) ATCGTTGGGCCCCCGGTTCGATTCCGGGCT 1 chrX:390747-391319 ( 66) ATCTGAAGGTCGAGAGTTCGAACCTCCCCT 1 chrVI:180665-181392 ( 2) ATCGTTGGGCCCCCGGTTCGATTCCGGGCT 1 chrIV:1175529-1176209 ( 47) ATCTGAAGGTCGAGAGTTCGAACCTCCCCT 1 chrIV:488490-489140 ( 38) CGGCGAAGATCCCGAGTTCGAACCTCGGTT 1 chrXVI:810427-811032 ( 35) ATCGCAAGATCGTGAGTTCAACCCTCACTG 1 chrXIV:632398-632952 ( 12) ATCGCAAGATCGTGAGTTCAACCCTCACTG 1 chrXIV:102486-103073 ( 25) ATCGCAAGATCGTGAGTTCAACCCTCACTG 1 chrXII:975690-976281 ( 54) ATCGCAAGATCGTGAGTTCAACCCTCACTG 1 chrXI:74377-74956 ( 46) ATCGCAAGATCGTGAGTTCAACCCTCACTG 1 chrVII:730904-731444 ( 51) ATCGCAAGATCGTGAGTTCAACCCTCACTG 1 chrVI:137137-137929 ( 9) ATCGCAAGATCGTGAGTTCAACCCTCACTG 1 chrIII:127507-127968 ( 67) ATCGCAAGATCGTGAGTTCAACCCTCACTG 1 chrIV:1075282-1075766 ( 4) CGGCAAAGGTCCCGAGTTCGATCCTCGGTT 1 chrXVI:622274-622820 ( 49) ATCTGGAGGTCCTGTGTTCGATCCACAGAA 1 chrXVI:559984-560519 ( 3) ATCTGGAGGTCCTGTGTTCGATCCACAGAA 1 chrVIII:358216-358849 ( 2) ATCTGGAGGTCCTGTGTTCGATCCACAGAA 1 chrXIII:837598-838415 ( 25) ATCTTGAGATCGGGCGTTCGACTCGCCCCC 1 chrVI:210425-210894 ( 16) ATCTTGAGATCGGGCGTTCGACTCGCCCCC 1 chrVI:167249-167698 ( 67) ATCTTGAGATCGGGCGTTCGACTCGCCCCC 1 chrIV:946143-946667 ( 10) ATCTTGAGATCGGGCGTTCGACTCGCCCCC 1 chrVII:541597-542192 ( 42) ACCGTGGAGACCGGGGTTCGACTCCCCGTA 1 chrV:176882-177455 ( 17) ACCGTGGAGACCGGGGTTCGACTCCCCGTA 1 chrXIV:546942-547380 ( 50) TGCGAGAGGCCCTGGGTTCAATTCCCAGCT 1 chrXVI:338262-339437 ( 55) ACCCTGATGTCCTCGGATCGAAACCGAGCG 1 chrX:517490-518201 ( 24) ACCCTGATGTCCTCGGATCGAAACCGAGCG 1 chrVIII:466750-467284 ( 59) ATGCAAAGGTCGCTAGTTCAATTCTGGCAG 1 chrXV:340073-340610 ( 14) ACCAGAAGATTCCAGGTTCAAGTCCTGGCG 1 chrV:492129-492581 ( 53) ACCAGAAGATTCCAGGTTCAAGTCCTGGCG 1 chrXIV:96007-96559 ( 14) AAGGTGGGGACACGGGTTCGATTCTCGTAC 1 chrVII:661315-662340 ( 8) ATGCAAAGGTCGTTAGTTCAATTCTGACAG 1 chrVI:204727-205191 ( 21) TGGGAGAGGTCTCCGGTTCGATTCCGGACT 1 chrIV:410131-410701 ( 50) TGGGAGAGGTCTCCGGTTCGATTCCGGACT 1 chrVII:706927-707349 ( 26) ATCTGTTGGTCCTTAGTTCGATCCTGAGTG 1 chrII:347382-347943 ( 47) ACTGAAGGATGCGAGGTTCGAACTCGCGCG 1 chrII:9341-9910 ( 64) ACTGAAGGATGCGAGGTTCGAACTCGCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCNGRAGRTCVBSGGTTCGAHYCCSVBHG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 41819 bayes= 10.8657 E= 1.0e-393 144 -106 -1297 -267 -466 46 -6 82 -1297 191 66 -367 -42 53 72 -67 -76 -87 142 -50 62 -1297 134 -267 129 -1297 22 -466 -367 -41 206 -208 62 -1297 149 -1297 -150 -187 -1297 140 -1297 220 -287 -121 19 109 30 -367 -308 66 83 14 -267 118 146 -308 -21 -187 178 -267 -1297 -1297 246 -1297 -367 -1297 -1297 162 -1297 -1297 -1297 165 -1297 246 -1297 -1297 -50 -1297 209 -1297 165 -1297 -1297 -1297 -50 22 -17 33 -367 166 -1297 33 -1297 242 -1297 -367 -267 178 -187 -21 -1297 146 138 -367 -2 99 83 -1297 -367 30 109 19 3 94 -1297 3 -135 -41 156 -67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCNGRAGRTCVBSGGTTCGAHYCCSVBHG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 80 E= 1.0e-393 0.862500 0.087500 0.000000 0.050000 0.012500 0.250000 0.175000 0.562500 0.000000 0.687500 0.287500 0.025000 0.237500 0.262500 0.300000 0.200000 0.187500 0.100000 0.487500 0.225000 0.487500 0.000000 0.462500 0.050000 0.775000 0.000000 0.212500 0.012500 0.025000 0.137500 0.762500 0.075000 0.487500 0.000000 0.512500 0.000000 0.112500 0.050000 0.000000 0.837500 0.000000 0.837500 0.025000 0.137500 0.362500 0.387500 0.225000 0.025000 0.037500 0.287500 0.325000 0.350000 0.050000 0.412500 0.500000 0.037500 0.275000 0.050000 0.625000 0.050000 0.000000 0.000000 1.000000 0.000000 0.025000 0.000000 0.000000 0.975000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.225000 0.000000 0.775000 0.000000 1.000000 0.000000 0.000000 0.000000 0.225000 0.212500 0.162500 0.400000 0.025000 0.575000 0.000000 0.400000 0.000000 0.975000 0.000000 0.025000 0.050000 0.625000 0.050000 0.275000 0.000000 0.500000 0.475000 0.025000 0.312500 0.362500 0.325000 0.000000 0.025000 0.225000 0.387500 0.362500 0.325000 0.350000 0.000000 0.325000 0.125000 0.137500 0.537500 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCNGRAGRTCVBSGGTTCGAHYCCSVBHG MEME-1 regular expression -------------------------------------------------------------------------------- A[TC][CG][GCAT][GT][AG][AG]G[GA]TC[CAG][TGC][GC][GA]GTTC[GA]A[TAC][CT]C[CT][CG][CGA][GTC][CAT][GT] -------------------------------------------------------------------------------- Time 340.10 secs. ******************************************************************************** ******************************************************************************** MOTIF KGBCNARTTGGTTAAGGCRYCDGMCTRDYA MEME-2 width = 30 sites = 52 llr = 1049 E-value = 6.6e-193 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGBCNARTTGGTTAAGGCRYCDGMCTRDYA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::12732:::::97:::3123:5::4429 pos.-specific C :14842::22:11::2:a:451237:1:3: probability G 794:32622783::18a:7:2262:13311 matrix T 3:2:2:1662269:2::::5141:39235: bits 2.5 2.2 ** 2.0 * ** 1.7 * * *** Relative 1.5 * * * * *** * Entropy 1.2 ** * * ** **** ** (29.1 bits) 1.0 ** * * ** ** **** * ** * 0.7 **** ** ***** **** * ** * 0.5 **** ** ************* **** * 0.2 ********************* **** *** 0.0 ------------------------------ Multilevel GGCCCAGTTGGTTAAGGCGTCTGACTAATA consensus T G G AGC G ACGACCT GGC sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGBCNARTTGGTTAAGGCRYCDGMCTRDYA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXVI:810427-811032 + 5 2.32e-14 CCAT GGCCAAGTTGGTTAAGGCGTGCGACTGTTA ATCGCAAGAT chrXV:487203-487707 + 42 2.32e-14 TAGACTCCAT GGCCAAGTTGGTTAAGGCGTGCGACTGTTA ATCGCAAGAT chrXV:228050-228633 + 48 2.32e-14 TAGACTCCAT GGCCAAGTTGGTTAAGGCGTGCGACTGTTA ATCGCAAGAT chrXI:74377-74956 + 16 2.32e-14 TAGACTCCAT GGCCAAGTTGGTTAAGGCGTGCGACTGTTA ATCGCAAGAT chrVII:730904-731444 + 21 2.32e-14 AAGACTCCAT GGCCAAGTTGGTTAAGGCGTGCGACTGTTA ATCGCAAGAT chrVI:137137-137929 - 39 2.32e-14 CTGACTCCAT GGCCAAGTTGGTTAAGGCGTGCGACTGTTA ATCGCAAGAT chrIII:127507-127968 + 37 2.32e-14 ATGACTCCAT GGCCAAGTTGGTTAAGGCGTGCGACTGTTA ATCGCAAGAT chrXVI:819319-819827 + 14 2.31e-13 ATGGTCTCTT GGCCCAGTTGGTTAAGGCACCGTGCTAATA ACGCGGGGAT chrXII:734694-734997 + 15 2.31e-13 TTGGTCTCTT GGCCCAGTTGGTTAAGGCACCGTGCTAATA ACGCGGGGAT chrV:550969-551656 - 59 2.31e-13 CAGGTCTCTT GGCCCAGTTGGTTAAGGCACCGTGCTAATA ACGCGGGGAT chrIX:210501-210944 + 1 2.31e-13 . GGCCCAGTTGGTTAAGGCACCGTGCTAATA ACGCGGGGAT chrIX:183270-183742 - 20 2.31e-13 CTGGTCTCTT GGCCCAGTTGGTTAAGGCACCGTGCTAATA ACGCGGGGAT chrII:197152-197883 + 35 2.31e-13 AAGGTCTCTT GGCCCAGTTGGTTAAGGCACCGTGCTAATA ACGCGGGGAT chrXV:113490-114144 + 42 3.43e-12 TTAGCTTCTA TGGCCAAGTTGGTAAGGCGCCACACTAGTA ATGTGGAGAT chrX:58646-59618 - 54 3.43e-12 GAAGCTTCTA TGGCCAAGTTGGTAAGGCGCCACACTAGTA ATGTGGAGAT chrVIII:115844-116487 - 28 3.43e-12 AGAGCTTCTA TGGCCAAGTTGGTAAGGCGCCACACTAGTA ATGTGGAGAT chrIX:174761-175346 + 35 3.43e-12 CGAGCTTCTA TGGCCAAGTTGGTAAGGCGCCACACTAGTA ATGTGGAGAT chrII:266037-266716 + 59 3.43e-12 ACTGCTTCTA TGGCCAAGTTGGTAAGGCGCCACACTAGTA ATGTGGAGAT chrXVI:689305-689884 + 28 1.34e-11 TTGGGCACTA TGGCCGAGTGGTTAAGGCGACAGACTTGAA ATCTGTTGGG chrXIII:586390-587041 - 7 1.74e-11 ATGGTTTCGT GGTCTAGTCGGTTATGGCATCTGCTTAACA CGCAGA chrXIII:420313-420921 - 57 1.74e-11 CAGGTTTCGT GGTCTAGTCGGTTATGGCATCTGCTTAACA CGCAGAACGT chrXIII:372176-372745 - 71 1.74e-11 . GGTCTAGTCGGTTATGGCATCTGCTTAACA CGCAGAACGT chrXI:379499-379928 + 25 1.74e-11 TAGGTTTCGT GGTCTAGTCGGTTATGGCATCTGCTTAACA CGCAGAACGT chrVII:823250-823704 + 63 1.74e-11 GTGGTTTCGT GGTCTAGTCGGTTATGGCATCTGCTTAACA CGCAGAAC chrVII:412111-412595 - 27 1.74e-11 CTGGTTTCGT GGTCTAGTCGGTTATGGCATCTGCTTAACA CGCAGAACGT chrV:469234-469786 + 5 1.74e-11 TCGT GGTCTAGTCGGTTATGGCATCTGCTTAACA CGCAGAACGT chrV:438390-438985 + 71 1.74e-11 TAGGTTTCGT GGTCTAGTCGGTTATGGCATCTGCTTAACA chrX:617747-618186 + 11 7.34e-11 ATGGGAGTTT GGCCGAGTGGTTTAAGGCGTCAGATTTAGG TGGATTTAAC chrX:523642-524434 - 69 1.96e-10 CT TGGCCGAGTGGTTAAGGCGAAAGATTAGAA ATCTTTTGGG chrIV:980754-981276 - 54 1.96e-10 TGAGGCAACT TGGCCGAGTGGTTAAGGCGAAAGATTAGAA ATCTTTTGGG chrXIV:725971-726429 - 30 2.96e-10 TTGGAGGGTT GGCCGAGTGGTCTAAGGCGGCAGACTTAAG ATCTGTTGGA chrII:9341-9910 + 16 2.96e-10 GTGGAGGGTT GGCCGAGTGGTCTAAGGCGGCAGACTTAAG ATCTGTTGGA chrVII:205291-205743 + 62 1.23e-09 GTGGTTGTTT GGCCGAGCGGTCTAAGGCGCCTGATTCAAG CAATATCTT chrXVI:581687-582415 + 68 2.09e-09 AGAGCCTTGT TGGCGCAATCGGTAGCGCGTATGACTCTTA ATC chrVII:700190-701270 + 3 2.09e-09 CT GGCCGAGTGGTCTAAGGCGTCAGGTCGAGG TCCTGATCTC chrVI:226476-226994 - 39 2.09e-09 AATGCCTTGT TGGCGCAATCGGTAGCGCGTATGACTCTTA ATCATAAGGT chrV:135172-135725 - 63 2.09e-09 AGCCTTGT TGGCGCAATCGGTAGCGCGTATGACTCTTA ATCATAAGGT chrIV:1352350-1352746 - 4 2.09e-09 ATAGCCTTGT TGGCGCAATCGGTAGCGCGTATGACTCTTA ATC chrXV:853999-854430 - 59 4.39e-09 TCAGGGCACA TGGCGCAGTTGGTAGCGCGCTTCCCTTGCA AGGAAGAGGT chrXII:214654-215185 - 50 4.39e-09 TTAGGGCACA TGGCGCAGTTGGTAGCGCGCTTCCCTTGCA AGGAAGAGGT chrV:311790-312304 - 62 4.39e-09 CTGGGCACA TGGCGCAGTTGGTAGCGCGCTTCCCTTGCA AGGAAGAGGT chrIV:488490-489140 - 68 7.01e-09 AAT GGTCCAGTGGTTCAAGACGTCGCCTTTACA CGGCGAAGAT chrXV:340073-340610 - 44 7.56e-09 CTGTTCCTCG TGGCCCAATGGTCACGGCGTCTGGCTACGA ACCAGAAGAT chrXIII:168576-169070 + 31 3.76e-08 ACTCTCGGTA GCCAAGTTGGTTTAAGGCGCAAGACTGTAA TTTACCACTA chrVI:210425-210894 - 60 3.76e-08 ACTCTCGGTA GCCAAGTTGGTTTAAGGCGCAAGACTGTAA TTTACCACTA chrVI:167249-167698 + 23 3.76e-08 ACTCTCGGTA GCCAAGTTGGTTTAAGGCGCAAGACTGTAA TTTACCACTA chrXI:46495-47016 - 66 1.05e-07 CCCTT TTGGCCAAGTGGTAAGGCATCGCACTCGTA ATGCGGGGAT chrXII:784139-784562 + 61 1.11e-07 ACCGTCCCAG TGGCCGAGTGGTTAAGGCGATGCCTGCTAT TTCCTCAGAA chrI:229103-230192 + 49 1.25e-07 AATGGGACAG GGTATAGACCGCTGAGGCAAGTGCCGTGTA TGGTGATGTG chrIII:1-1716 - 28 1.32e-07 AATGGCACAG GGTATAGACCGCTGAGGCAAGTGCCGTGCA TAATGATGCG chrIV:1278709-1279097 + 7 1.40e-06 CCGCGA GGGGCGGATCTGCAACGCACGGTGCCGGGG TTAAGGTATG chrV:441715-442614 + 68 1.73e-06 GCCCGGAGGC GGGAGAGTCCGTTCTGAAGTGTCCCGGCTA TAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGBCNARTTGGTTAAGGCRYCDGMCTRDYA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:810427-811032 2.3e-14 4_[+2]_66 chrXV:487203-487707 2.3e-14 41_[+2]_29 chrXV:228050-228633 2.3e-14 47_[+2]_23 chrXI:74377-74956 2.3e-14 15_[+2]_55 chrVII:730904-731444 2.3e-14 20_[+2]_50 chrVI:137137-137929 2.3e-14 38_[-2]_32 chrIII:127507-127968 2.3e-14 36_[+2]_34 chrXVI:819319-819827 2.3e-13 13_[+2]_57 chrXII:734694-734997 2.3e-13 14_[+2]_56 chrV:550969-551656 2.3e-13 58_[-2]_12 chrIX:210501-210944 2.3e-13 [+2]_70 chrIX:183270-183742 2.3e-13 19_[-2]_51 chrII:197152-197883 2.3e-13 34_[+2]_36 chrXV:113490-114144 3.4e-12 41_[+2]_29 chrX:58646-59618 3.4e-12 53_[-2]_17 chrVIII:115844-116487 3.4e-12 27_[-2]_43 chrIX:174761-175346 3.4e-12 34_[+2]_36 chrII:266037-266716 3.4e-12 58_[+2]_12 chrXVI:689305-689884 1.3e-11 27_[+2]_43 chrXIII:586390-587041 1.7e-11 6_[-2]_64 chrXIII:420313-420921 1.7e-11 56_[-2]_14 chrXIII:372176-372745 1.7e-11 70_[-2] chrXI:379499-379928 1.7e-11 24_[+2]_46 chrVII:823250-823704 1.7e-11 62_[+2]_8 chrVII:412111-412595 1.7e-11 26_[-2]_44 chrV:469234-469786 1.7e-11 4_[+2]_66 chrV:438390-438985 1.7e-11 70_[+2] chrX:617747-618186 7.3e-11 10_[+2]_60 chrX:523642-524434 2e-10 68_[-2]_2 chrIV:980754-981276 2e-10 53_[-2]_17 chrXIV:725971-726429 3e-10 29_[-2]_41 chrII:9341-9910 3e-10 15_[+2]_55 chrVII:205291-205743 1.2e-09 61_[+2]_9 chrXVI:581687-582415 2.1e-09 67_[+2]_3 chrVII:700190-701270 2.1e-09 2_[+2]_68 chrVI:226476-226994 2.1e-09 38_[-2]_32 chrV:135172-135725 2.1e-09 62_[-2]_8 chrIV:1352350-1352746 2.1e-09 3_[-2]_67 chrXV:853999-854430 4.4e-09 58_[-2]_12 chrXII:214654-215185 4.4e-09 49_[-2]_21 chrV:311790-312304 4.4e-09 61_[-2]_9 chrIV:488490-489140 7e-09 67_[-2]_3 chrXV:340073-340610 7.6e-09 43_[-2]_27 chrXIII:168576-169070 3.8e-08 30_[+2]_40 chrVI:210425-210894 3.8e-08 59_[-2]_11 chrVI:167249-167698 3.8e-08 22_[+2]_48 chrXI:46495-47016 1.1e-07 65_[-2]_5 chrXII:784139-784562 1.1e-07 60_[+2]_10 chrI:229103-230192 1.2e-07 48_[+2]_22 chrIII:1-1716 1.3e-07 27_[-2]_43 chrIV:1278709-1279097 1.4e-06 6_[+2]_64 chrV:441715-442614 1.7e-06 67_[+2]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGBCNARTTGGTTAAGGCRYCDGMCTRDYA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGBCNARTTGGTTAAGGCRYCDGMCTRDYA width=30 seqs=52 chrXVI:810427-811032 ( 5) GGCCAAGTTGGTTAAGGCGTGCGACTGTTA 1 chrXV:487203-487707 ( 42) GGCCAAGTTGGTTAAGGCGTGCGACTGTTA 1 chrXV:228050-228633 ( 48) GGCCAAGTTGGTTAAGGCGTGCGACTGTTA 1 chrXI:74377-74956 ( 16) GGCCAAGTTGGTTAAGGCGTGCGACTGTTA 1 chrVII:730904-731444 ( 21) GGCCAAGTTGGTTAAGGCGTGCGACTGTTA 1 chrVI:137137-137929 ( 39) GGCCAAGTTGGTTAAGGCGTGCGACTGTTA 1 chrIII:127507-127968 ( 37) GGCCAAGTTGGTTAAGGCGTGCGACTGTTA 1 chrXVI:819319-819827 ( 14) GGCCCAGTTGGTTAAGGCACCGTGCTAATA 1 chrXII:734694-734997 ( 15) GGCCCAGTTGGTTAAGGCACCGTGCTAATA 1 chrV:550969-551656 ( 59) GGCCCAGTTGGTTAAGGCACCGTGCTAATA 1 chrIX:210501-210944 ( 1) GGCCCAGTTGGTTAAGGCACCGTGCTAATA 1 chrIX:183270-183742 ( 20) GGCCCAGTTGGTTAAGGCACCGTGCTAATA 1 chrII:197152-197883 ( 35) GGCCCAGTTGGTTAAGGCACCGTGCTAATA 1 chrXV:113490-114144 ( 42) TGGCCAAGTTGGTAAGGCGCCACACTAGTA 1 chrX:58646-59618 ( 54) TGGCCAAGTTGGTAAGGCGCCACACTAGTA 1 chrVIII:115844-116487 ( 28) TGGCCAAGTTGGTAAGGCGCCACACTAGTA 1 chrIX:174761-175346 ( 35) TGGCCAAGTTGGTAAGGCGCCACACTAGTA 1 chrII:266037-266716 ( 59) TGGCCAAGTTGGTAAGGCGCCACACTAGTA 1 chrXVI:689305-689884 ( 28) TGGCCGAGTGGTTAAGGCGACAGACTTGAA 1 chrXIII:586390-587041 ( 7) GGTCTAGTCGGTTATGGCATCTGCTTAACA 1 chrXIII:420313-420921 ( 57) GGTCTAGTCGGTTATGGCATCTGCTTAACA 1 chrXIII:372176-372745 ( 71) GGTCTAGTCGGTTATGGCATCTGCTTAACA 1 chrXI:379499-379928 ( 25) GGTCTAGTCGGTTATGGCATCTGCTTAACA 1 chrVII:823250-823704 ( 63) GGTCTAGTCGGTTATGGCATCTGCTTAACA 1 chrVII:412111-412595 ( 27) GGTCTAGTCGGTTATGGCATCTGCTTAACA 1 chrV:469234-469786 ( 5) GGTCTAGTCGGTTATGGCATCTGCTTAACA 1 chrV:438390-438985 ( 71) GGTCTAGTCGGTTATGGCATCTGCTTAACA 1 chrX:617747-618186 ( 11) GGCCGAGTGGTTTAAGGCGTCAGATTTAGG 1 chrX:523642-524434 ( 69) TGGCCGAGTGGTTAAGGCGAAAGATTAGAA 1 chrIV:980754-981276 ( 54) TGGCCGAGTGGTTAAGGCGAAAGATTAGAA 1 chrXIV:725971-726429 ( 30) GGCCGAGTGGTCTAAGGCGGCAGACTTAAG 1 chrII:9341-9910 ( 16) GGCCGAGTGGTCTAAGGCGGCAGACTTAAG 1 chrVII:205291-205743 ( 62) GGCCGAGCGGTCTAAGGCGCCTGATTCAAG 1 chrXVI:581687-582415 ( 68) TGGCGCAATCGGTAGCGCGTATGACTCTTA 1 chrVII:700190-701270 ( 3) GGCCGAGTGGTCTAAGGCGTCAGGTCGAGG 1 chrVI:226476-226994 ( 39) TGGCGCAATCGGTAGCGCGTATGACTCTTA 1 chrV:135172-135725 ( 63) TGGCGCAATCGGTAGCGCGTATGACTCTTA 1 chrIV:1352350-1352746 ( 4) TGGCGCAATCGGTAGCGCGTATGACTCTTA 1 chrXV:853999-854430 ( 59) TGGCGCAGTTGGTAGCGCGCTTCCCTTGCA 1 chrXII:214654-215185 ( 50) TGGCGCAGTTGGTAGCGCGCTTCCCTTGCA 1 chrV:311790-312304 ( 62) TGGCGCAGTTGGTAGCGCGCTTCCCTTGCA 1 chrIV:488490-489140 ( 68) GGTCCAGTGGTTCAAGACGTCGCCTTTACA 1 chrXV:340073-340610 ( 44) TGGCCCAATGGTCACGGCGTCTGGCTACGA 1 chrXIII:168576-169070 ( 31) GCCAAGTTGGTTTAAGGCGCAAGACTGTAA 1 chrVI:210425-210894 ( 60) GCCAAGTTGGTTTAAGGCGCAAGACTGTAA 1 chrVI:167249-167698 ( 23) GCCAAGTTGGTTTAAGGCGCAAGACTGTAA 1 chrXI:46495-47016 ( 66) TTGGCCAAGTGGTAAGGCATCGCACTCGTA 1 chrXII:784139-784562 ( 61) TGGCCGAGTGGTTAAGGCGATGCCTGCTAT 1 chrI:229103-230192 ( 49) GGTATAGACCGCTGAGGCAAGTGCCGTGTA 1 chrIII:1-1716 ( 28) GGTATAGACCGCTGAGGCAAGTGCCGTGCA 1 chrIV:1278709-1279097 ( 7) GGGGCGGATCTGCAACGCACGGTGCCGGGG 1 chrV:441715-442614 ( 68) GGGAGAGTCCGTTCTGAAGTGTCCCGGCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGBCNARTTGGTTAAGGCRYCDGMCTRDYA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 41819 bayes= 11.2809 E= 6.6e-193 -1234 -1234 184 12 -1234 -166 234 -404 -1234 115 108 -59 -146 221 -224 -1234 -72 100 46 -72 108 -7 -24 -1234 12 -1234 171 -246 -88 -324 34 86 -1234 21 8 91 -1234 -24 188 -88 -1234 -1234 215 -72 -1234 -66 56 95 -1234 -166 -1234 157 157 -324 -224 -1234 108 -324 -44 -88 -1234 -24 221 -1234 -304 -1234 240 -1234 -404 243 -1234 -1234 12 -1234 184 -1234 -146 100 -224 60 -88 156 21 -205 -14 -44 8 28 -1234 34 180 -124 71 76 -7 -1234 -1234 196 -1234 -14 -1234 -224 -124 148 41 -44 46 -72 28 -224 66 -14 -72 46 -124 60 145 -1234 -66 -404 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGBCNARTTGGTTAAGGCRYCDGMCTRDYA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 52 E= 6.6e-193 0.000000 0.000000 0.653846 0.346154 0.000000 0.057692 0.923077 0.019231 0.000000 0.403846 0.384615 0.211538 0.115385 0.846154 0.038462 0.000000 0.192308 0.365385 0.250000 0.192308 0.673077 0.173077 0.153846 0.000000 0.346154 0.000000 0.596154 0.057692 0.173077 0.019231 0.230769 0.576923 0.000000 0.211538 0.192308 0.596154 0.000000 0.153846 0.673077 0.173077 0.000000 0.000000 0.807692 0.192308 0.000000 0.115385 0.269231 0.615385 0.000000 0.057692 0.000000 0.942308 0.942308 0.019231 0.038462 0.000000 0.673077 0.019231 0.134615 0.173077 0.000000 0.153846 0.846154 0.000000 0.038462 0.000000 0.961538 0.000000 0.019231 0.980769 0.000000 0.000000 0.346154 0.000000 0.653846 0.000000 0.115385 0.365385 0.038462 0.480769 0.173077 0.538462 0.211538 0.076923 0.288462 0.134615 0.192308 0.384615 0.000000 0.230769 0.634615 0.134615 0.519231 0.307692 0.173077 0.000000 0.000000 0.711538 0.000000 0.288462 0.000000 0.038462 0.076923 0.884615 0.423077 0.134615 0.250000 0.192308 0.384615 0.038462 0.288462 0.288462 0.192308 0.250000 0.076923 0.480769 0.865385 0.000000 0.115385 0.019231 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGBCNARTTGGTTAAGGCRYCDGMCTRDYA MEME-2 regular expression -------------------------------------------------------------------------------- [GT]G[CGT]C[CG]A[GA][TG][TC]GG[TG]TAAGGC[GA][TC][CG][TA][GC][AC][CT]T[AG][AGT][TC]A -------------------------------------------------------------------------------- Time 648.60 secs. ******************************************************************************** ******************************************************************************** MOTIF GSSSRKGTRGYKTAGTGGTWA MEME-3 width = 21 sites = 61 llr = 867 E-value = 1.3e-104 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSSSRKGTRGYKTAGTGGTWA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::11412:5::1:a3:::146 pos.-specific C :53521::::312::11:11: probability G 9453326:5a141:7:99212 matrix T 1:2:152a::647::911641 bits 2.5 * 2.2 * 2.0 * * 1.7 * * * ** Relative 1.5 * * * * ** Entropy 1.2 * * * ** ** (20.5 bits) 1.0 ** *** ***** 0.7 ** * ***** ****** 0.5 **** ************ * 0.2 ******************* * 0.0 --------------------- Multilevel GCGCATGTAGTGTAGTGGTAA consensus GCGGGT G CT A GTG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSSSRKGTRGYKTAGTGGTWA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:96007-96559 - 59 1.35e-10 TCCAACACAT GGGCGGTTAGTGTAGTGGTTA TCATCCCACC chrVII:779355-779866 + 56 1.35e-10 AGTTAACCCC GGGCGGTTAGTGTAGTGGTTA TCATCCCACC chrXIII:183701-184178 - 59 2.58e-10 AATAAAGATC GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrX:396519-397047 - 43 2.58e-10 TCAAAAGTAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrVII:845365-845940 + 47 2.58e-10 TAAATAACAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrVI:180665-181392 - 46 2.58e-10 CAAGAAATAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrIV:992539-993068 + 79 2.58e-10 ACAATTGTGA GCGCAAGTGGTTTAGTGGTAA A chrIV:83281-83834 + 41 2.58e-10 AGTTCACTTA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrXIII:195830-196418 - 76 4.67e-10 ACAA GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrXII:92294-92883 + 10 4.67e-10 AGTTAATAA GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrVI:101112-101659 + 41 4.67e-10 ACAATAATTC GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrI:138907-139452 + 23 4.67e-10 CAATTAGTAC GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrXV:594137-594702 - 36 1.37e-09 TGATTGAAAC GCGCAAGTGGTTCAGTGGTTA GAATTTATGC chrXI:517763-518159 + 77 1.37e-09 TATCTACTAT GGGCGTGTGGCGTAGTCGGTA GCG chrX:197115-197627 - 44 1.37e-09 AATAATATTA GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrVI:204727-205191 - 67 1.37e-09 ACAAACGTTC GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrIV:410131-410701 + 13 1.37e-09 TACAAATATT GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrXII:605158-605627 - 70 2.25e-09 TTTCGAAAAT GCTCGTGTAGCTCAGTGGTTA GAGCTTCGTG chrIV:884132-884663 + 14 2.25e-09 TTTCGAAAAT GCTCGTGTAGCTCAGTGGTTA GAGCTTCGTG chrXIII:807997-808559 - 69 7.32e-09 AGAAGAAAAA GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrVII:706927-707349 - 71 7.32e-09 GAAAATCAA GCTCGTATGGCGCAGTGGTAG CGCAGCAGAT chrIV:802478-803037 - 75 7.32e-09 TTGTC GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrIII:168091-168620 - 47 7.32e-09 AAGAAGTCCT GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrXIII:131446-132327 - 40 1.10e-08 AAGAAATTTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrIV:568478-569257 + 65 1.10e-08 ACAAATAGTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrXIV:631611-632218 - 33 4.21e-08 AACTTCTACC GGGCGTGTGGTCTAGAGGTAT GATTCTCGCT chrXII:489294-489559 + 43 4.21e-08 GTAAGAGCCT GACCGAGTAGTGTAGTGGGTG ACCATACGCG chrIII:123408-123810 - 69 4.21e-08 TTTCAAAGGA GGGCGTGTGGTCTAGAGGTAT GATTCTCGCT chrIII:227622-228207 + 78 1.66e-07 AAATCGAAAT GGCACTATGGCCGAGTGGTTA AG chrXII:731870-732267 + 72 1.83e-07 AACATACAAT GGGAGTTTGGCCGAGTGGTTT AAGGCGTC chrVII:11-203 - 35 2.22e-07 GGTAACGAGT GGGGAGGTAGGGTAATGGAGG GTAAGTTGTG chrII:813021-813182 + 6 2.22e-07 CGAGT GGGGAGGTAGGGTAATGGAGG GTAGGTTTGG chrVIII:466750-467284 + 23 3.23e-07 TGTATTTTTA GCCTCCTTAGCTTAGTGGTAG AGCGTTGCAC chrVII:1004041-1004418 + 37 3.23e-07 TCAAGGGTTT GCCTCCTTAGCTTAGTGGTAG AGCGTTGCAC chrIV:28-351 - 71 3.53e-07 GTAACGAGT GGGGAGGTAGGGTAATGTGAG GGTAGGTTTG chrIII:316273-316620 + 51 3.53e-07 GGTAACGAGT GGGGAGGTAGGGTAATGTGAG GGTAGGTTTG chrXIV:783354-784319 + 10 3.86e-07 AGCAGATGG GGGATGGTAGGGTAATGGCAG GGTAAGTGGT chrIV:1016951-1017639 - 13 4.61e-07 CAAGGTACAA TCCGATGTAGTGTAACGGCTA TCACATCACG chrXVI:559984-560519 - 68 5.03e-07 TAGAAATTGA GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrXIII:352058-352442 + 80 5.03e-07 ATGAATATAA GCGGATTTAGCTCAGTTGGGA chrVIII:358216-358849 - 67 5.03e-07 CAAATAGTAA GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrII:36156-36587 + 77 5.03e-07 TTAGTTGTAA GCGGATTTAGCTCAGTTGGGA GAG chrXIII:362835-363322 + 36 7.68e-07 ATCCAAGTTT GCCATCTTAGTATAGTGGTTA GTACACATCG chrVII:110401-110933 - 59 7.68e-07 ATAATTACCT GCCATCTTAGTATAGTGGTTA GTACACATCG chrV:434392-434766 - 63 7.68e-07 TTGAAAAGTC GCCATCTTAGTATAGTGGTTA GTACACATCG chrX:424295-424773 - 11 1.06e-06 TAAATAAGAT GGAGGGTTGGCCGAGTGGTCT AAGGCGGCAG chrXIII:290232-291390 + 40 1.57e-06 TGAAATATAA TCCGATATAGTGTAACGGCTA TCACATCACG chrXI:302669-303231 + 18 1.57e-06 ATTCCAAGAT GAAGCGGTGGCTCAATGGTAG AGCTTTCGAC chrVII:541597-542192 + 6 1.57e-06 TACCA TCCGATATAGTGTAACGGCTA TCACATCACG chrVII:286952-287920 - 49 1.57e-06 ATTTCAAGAT GAAGCGGTGGCTCAATGGTAG AGCTTTCGAC chrIX:370165-370653 + 58 1.57e-06 TAGATTATAA TCCGATATAGTGTAACGGCTA TCACATCACG chrXIII:463190-463961 + 29 1.82e-06 CAGAAATTTG TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrX:374183-374775 - 46 1.82e-06 CTTTGTTTCT TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrX:355086-355770 + 78 1.82e-06 CTTTGTTTCT TCCGTGATAGTTTAATGGTCA GA chrXV:3-1013 - 67 1.96e-06 GTGAGAGATG GGCCATGGAGTGGAATGTGAA AGTAGGGTAA chrX:517490-518201 - 69 2.44e-06 ATAAAAGTTA AGCGCCGTGGCGCAGTGGAAG CGCGCAGGGC chrXI:0-1019 - 27 2.62e-06 AGTGAGACTG GGCCATGGAGTGGAATGTGAG AGTAGGGTAA chrXVI:435620-436539 + 18 3.23e-06 CTTCCTGTCA GGACTTGTGGTTGATTGGTGA AAATCAAATA chrXI:67632-68393 + 37 5.49e-06 CCATTGCATC GCGATGTTAGTTTAGCGGAGT TTCTTGGCAT chrIV:1075282-1075766 - 50 5.86e-06 CCGTAATATT GTTCCAATAGTGTAGCGGCTA TCACGTTGCC chrIV:359321-359863 + 44 1.21e-05 ATCCTTGTTA GCTCAGTTGGTAGAGCGTTCG GCTTTTAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSSSRKGTRGYKTAGTGGTWA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:96007-96559 1.4e-10 58_[-3]_21 chrVII:779355-779866 1.4e-10 55_[+3]_24 chrXIII:183701-184178 2.6e-10 58_[-3]_21 chrX:396519-397047 2.6e-10 42_[-3]_37 chrVII:845365-845940 2.6e-10 46_[+3]_33 chrVI:180665-181392 2.6e-10 45_[-3]_34 chrIV:992539-993068 2.6e-10 78_[+3]_1 chrIV:83281-83834 2.6e-10 40_[+3]_39 chrXIII:195830-196418 4.7e-10 75_[-3]_4 chrXII:92294-92883 4.7e-10 9_[+3]_70 chrVI:101112-101659 4.7e-10 40_[+3]_39 chrI:138907-139452 4.7e-10 22_[+3]_57 chrXV:594137-594702 1.4e-09 35_[-3]_44 chrXI:517763-518159 1.4e-09 76_[+3]_3 chrX:197115-197627 1.4e-09 43_[-3]_36 chrVI:204727-205191 1.4e-09 66_[-3]_13 chrIV:410131-410701 1.4e-09 12_[+3]_67 chrXII:605158-605627 2.2e-09 69_[-3]_10 chrIV:884132-884663 2.2e-09 13_[+3]_66 chrXIII:807997-808559 7.3e-09 68_[-3]_11 chrVII:706927-707349 7.3e-09 70_[-3]_9 chrIV:802478-803037 7.3e-09 74_[-3]_5 chrIII:168091-168620 7.3e-09 46_[-3]_33 chrXIII:131446-132327 1.1e-08 39_[-3]_40 chrIV:568478-569257 1.1e-08 64_[+3]_15 chrXIV:631611-632218 4.2e-08 32_[-3]_47 chrXII:489294-489559 4.2e-08 42_[+3]_37 chrIII:123408-123810 4.2e-08 68_[-3]_11 chrIII:227622-228207 1.7e-07 77_[+3]_2 chrXII:731870-732267 1.8e-07 71_[+3]_8 chrVII:11-203 2.2e-07 34_[-3]_45 chrII:813021-813182 2.2e-07 5_[+3]_74 chrVIII:466750-467284 3.2e-07 22_[+3]_57 chrVII:1004041-1004418 3.2e-07 36_[+3]_43 chrIV:28-351 3.5e-07 70_[-3]_9 chrIII:316273-316620 3.5e-07 50_[+3]_29 chrXIV:783354-784319 3.9e-07 9_[+3]_70 chrIV:1016951-1017639 4.6e-07 12_[-3]_67 chrXVI:559984-560519 5e-07 67_[-3]_12 chrXIII:352058-352442 5e-07 79_[+3] chrVIII:358216-358849 5e-07 66_[-3]_13 chrII:36156-36587 5e-07 76_[+3]_3 chrXIII:362835-363322 7.7e-07 35_[+3]_44 chrVII:110401-110933 7.7e-07 58_[-3]_21 chrV:434392-434766 7.7e-07 62_[-3]_17 chrX:424295-424773 1.1e-06 10_[-3]_69 chrXIII:290232-291390 1.6e-06 39_[+3]_40 chrXI:302669-303231 1.6e-06 17_[+3]_62 chrVII:541597-542192 1.6e-06 5_[+3]_74 chrVII:286952-287920 1.6e-06 48_[-3]_31 chrIX:370165-370653 1.6e-06 57_[+3]_22 chrXIII:463190-463961 1.8e-06 28_[+3]_51 chrX:374183-374775 1.8e-06 45_[-3]_34 chrX:355086-355770 1.8e-06 77_[+3]_2 chrXV:3-1013 2e-06 66_[-3]_13 chrX:517490-518201 2.4e-06 68_[-3]_11 chrXI:0-1019 2.6e-06 26_[-3]_53 chrXVI:435620-436539 3.2e-06 17_[+3]_62 chrXI:67632-68393 5.5e-06 36_[+3]_43 chrIV:1075282-1075766 5.9e-06 49_[-3]_30 chrIV:359321-359863 1.2e-05 43_[+3]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSSSRKGTRGYKTAGTGGTWA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSSSRKGTRGYKTAGTGGTWA width=21 seqs=61 chrXIV:96007-96559 ( 59) GGGCGGTTAGTGTAGTGGTTA 1 chrVII:779355-779866 ( 56) GGGCGGTTAGTGTAGTGGTTA 1 chrXIII:183701-184178 ( 59) GCGCAAGTGGTTTAGTGGTAA 1 chrX:396519-397047 ( 43) GCGCAAGTGGTTTAGTGGTAA 1 chrVII:845365-845940 ( 47) GCGCAAGTGGTTTAGTGGTAA 1 chrVI:180665-181392 ( 46) GCGCAAGTGGTTTAGTGGTAA 1 chrIV:992539-993068 ( 79) GCGCAAGTGGTTTAGTGGTAA 1 chrIV:83281-83834 ( 41) GCGCAAGTGGTTTAGTGGTAA 1 chrXIII:195830-196418 ( 76) GGGCGTGTGGTCTAGTGGTAT 1 chrXII:92294-92883 ( 10) GGGCGTGTGGTCTAGTGGTAT 1 chrVI:101112-101659 ( 41) GGGCGTGTGGTCTAGTGGTAT 1 chrI:138907-139452 ( 23) GGGCGTGTGGTCTAGTGGTAT 1 chrXV:594137-594702 ( 36) GCGCAAGTGGTTCAGTGGTTA 1 chrXI:517763-518159 ( 77) GGGCGTGTGGCGTAGTCGGTA 1 chrX:197115-197627 ( 44) GGGCGTGTGGCGTAGTCGGTA 1 chrVI:204727-205191 ( 67) GGGCGTGTGGCGTAGTCGGTA 1 chrIV:410131-410701 ( 13) GGGCGTGTGGCGTAGTCGGTA 1 chrXII:605158-605627 ( 70) GCTCGTGTAGCTCAGTGGTTA 1 chrIV:884132-884663 ( 14) GCTCGTGTAGCTCAGTGGTTA 1 chrXIII:807997-808559 ( 69) GGTCCTATAGTGTAGTGGTTA 1 chrVII:706927-707349 ( 71) GCTCGTATGGCGCAGTGGTAG 1 chrIV:802478-803037 ( 75) GGTCCTATAGTGTAGTGGTTA 1 chrIII:168091-168620 ( 47) GGTCCTATAGTGTAGTGGTTA 1 chrXIII:131446-132327 ( 40) GCTCGCGTGGCGTAATGGCAA 1 chrIV:568478-569257 ( 65) GCTCGCGTGGCGTAATGGCAA 1 chrXIV:631611-632218 ( 33) GGGCGTGTGGTCTAGAGGTAT 1 chrXII:489294-489559 ( 43) GACCGAGTAGTGTAGTGGGTG 1 chrIII:123408-123810 ( 69) GGGCGTGTGGTCTAGAGGTAT 1 chrIII:227622-228207 ( 78) GGCACTATGGCCGAGTGGTTA 1 chrXII:731870-732267 ( 72) GGGAGTTTGGCCGAGTGGTTT 1 chrVII:11-203 ( 35) GGGGAGGTAGGGTAATGGAGG 1 chrII:813021-813182 ( 6) GGGGAGGTAGGGTAATGGAGG 1 chrVIII:466750-467284 ( 23) GCCTCCTTAGCTTAGTGGTAG 1 chrVII:1004041-1004418 ( 37) GCCTCCTTAGCTTAGTGGTAG 1 chrIV:28-351 ( 71) GGGGAGGTAGGGTAATGTGAG 1 chrIII:316273-316620 ( 51) GGGGAGGTAGGGTAATGTGAG 1 chrXIV:783354-784319 ( 10) GGGATGGTAGGGTAATGGCAG 1 chrIV:1016951-1017639 ( 13) TCCGATGTAGTGTAACGGCTA 1 chrXVI:559984-560519 ( 68) GCGGATTTAGCTCAGTTGGGA 1 chrXIII:352058-352442 ( 80) GCGGATTTAGCTCAGTTGGGA 1 chrVIII:358216-358849 ( 67) GCGGATTTAGCTCAGTTGGGA 1 chrII:36156-36587 ( 77) GCGGATTTAGCTCAGTTGGGA 1 chrXIII:362835-363322 ( 36) GCCATCTTAGTATAGTGGTTA 1 chrVII:110401-110933 ( 59) GCCATCTTAGTATAGTGGTTA 1 chrV:434392-434766 ( 63) GCCATCTTAGTATAGTGGTTA 1 chrX:424295-424773 ( 11) GGAGGGTTGGCCGAGTGGTCT 1 chrXIII:290232-291390 ( 40) TCCGATATAGTGTAACGGCTA 1 chrXI:302669-303231 ( 18) GAAGCGGTGGCTCAATGGTAG 1 chrVII:541597-542192 ( 6) TCCGATATAGTGTAACGGCTA 1 chrVII:286952-287920 ( 49) GAAGCGGTGGCTCAATGGTAG 1 chrIX:370165-370653 ( 58) TCCGATATAGTGTAACGGCTA 1 chrXIII:463190-463961 ( 29) TCCGTGATAGTTTAATGGTCA 1 chrX:374183-374775 ( 46) TCCGTGATAGTTTAATGGTCA 1 chrX:355086-355770 ( 78) TCCGTGATAGTTTAATGGTCA 1 chrXV:3-1013 ( 67) GGCCATGGAGTGGAATGTGAA 1 chrX:517490-518201 ( 69) AGCGCCGTGGCGCAGTGGAAG 1 chrXI:0-1019 ( 27) GGCCATGGAGTGGAATGTGAG 1 chrXVI:435620-436539 ( 18) GGACTTGTGGTTGATTGGTGA 1 chrXI:67632-68393 ( 37) GCGATGTTAGTTTAGCGGAGT 1 chrIV:1075282-1075766 ( 50) GTTCCAATAGTGTAGCGGCTA 1 chrIV:359321-359863 ( 44) GCTCAGTTGGTAGAGCGTTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSSSRKGTRGYKTAGTGGTWA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 47120 bayes= 10.2826 E= 1.3e-104 -427 -1257 225 -147 -269 143 128 -427 -228 61 143 -95 -147 157 77 -327 18 -15 85 -111 -111 -48 43 58 -69 -1257 161 -37 -1257 -1257 -247 161 77 -1257 133 -1257 -1257 -1257 246 -1257 -1257 92 -115 85 -228 -31 123 18 -1257 -2 -67 115 165 -1257 -1257 -1257 -11 -1257 192 -427 -327 -67 -1257 142 -1257 -147 225 -228 -1257 -1257 233 -195 -228 -48 23 89 37 -115 -48 25 97 -1257 33 -111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSSSRKGTRGYKTAGTGGTWA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 61 E= 1.3e-104 0.016393 0.000000 0.868852 0.114754 0.049180 0.491803 0.442623 0.016393 0.065574 0.278689 0.491803 0.163934 0.114754 0.540984 0.311475 0.032787 0.360656 0.163934 0.327869 0.147541 0.147541 0.131148 0.245902 0.475410 0.196721 0.000000 0.557377 0.245902 0.000000 0.000000 0.032787 0.967213 0.540984 0.000000 0.459016 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.344262 0.081967 0.573770 0.065574 0.147541 0.426230 0.360656 0.000000 0.180328 0.114754 0.704918 1.000000 0.000000 0.000000 0.000000 0.295082 0.000000 0.688525 0.016393 0.032787 0.114754 0.000000 0.852459 0.000000 0.065574 0.868852 0.065574 0.000000 0.000000 0.918033 0.081967 0.065574 0.131148 0.213115 0.590164 0.409836 0.081967 0.131148 0.377049 0.622951 0.000000 0.229508 0.147541 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSSSRKGTRGYKTAGTGGTWA MEME-3 regular expression -------------------------------------------------------------------------------- G[CG][GC][CG][AG][TG][GT]T[AG]G[TC][GT]TA[GA]TGG[TG][AT][AG] -------------------------------------------------------------------------------- Time 953.81 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:3-1368 6.17e-02 26_[-3(8.26e-05)]_53 chrI:81858-82309 7.55e-03 34_[-2(3.21e-05)]_36 chrI:138907-139452 1.86e-06 22_[+3(4.67e-10)]_57 chrI:141589-143696 2.23e-01 100 chrI:166026-166786 1.72e-01 100 chrI:180962-181502 3.31e-01 100 chrI:182337-183184 3.05e-01 100 chrI:229103-230192 3.41e-04 48_[+2(1.25e-07)]_22 chrII:6058-7144 5.00e-01 100 chrII:9341-9910 2.71e-14 15_[+2(2.96e-10)]_18_[-1(3.53e-08)]_\ 7 chrII:36156-36587 3.15e-03 76_[+3(5.03e-07)]_3 chrII:44945-45348 5.02e-01 100 chrII:60211-61321 8.98e-01 100 chrII:87960-88608 5.01e-01 100 chrII:88975-90012 3.23e-01 100 chrII:159796-160080 2.41e-01 100 chrII:165080-165653 6.21e-01 100 chrII:167737-169064 5.64e-02 100 chrII:181332-181667 8.24e-01 100 chrII:197152-197883 7.36e-22 34_[+2(2.31e-13)]_[+1(8.08e-14)]_6 chrII:217144-217461 4.96e-01 100 chrII:226856-227805 1.00e+00 100 chrII:256372-257012 7.73e-01 100 chrII:265466-265795 7.32e-01 100 chrII:266037-266716 5.75e-09 58_[+2(3.43e-12)]_12 chrII:301093-301576 8.31e-01 100 chrII:326602-327473 9.87e-01 100 chrII:332308-332903 4.57e-01 100 chrII:347382-347943 3.56e-05 46_[-1(3.53e-08)]_24 chrII:350545-351244 1.02e-07 18_[+1(2.58e-11)]_52 chrII:405186-406272 7.65e-01 100 chrII:415472-415989 5.71e-01 100 chrII:476880-477806 6.82e-01 100 chrII:478980-479455 5.97e-01 100 chrII:504459-504716 7.29e-02 100 chrII:555864-558540 8.06e-01 100 chrII:592367-593286 4.15e-01 100 chrII:604096-607110 5.64e-01 100 chrII:642929-643479 1.98e-01 100 chrII:644935-645596 9.96e-01 100 chrII:680330-682186 7.15e-01 100 chrII:813021-813182 1.22e-04 5_[+3(2.22e-07)]_74 chrIII:1-1716 9.95e-05 27_[-2(1.32e-07)]_43 chrIII:11074-11537 9.73e-01 100 chrIII:13977-16616 9.72e-01 100 chrIII:28803-31475 9.67e-01 100 chrIII:58695-58995 5.54e-01 100 chrIII:78377-78758 3.99e-02 100 chrIII:81978-82755 8.60e-01 100 chrIII:123408-123810 6.02e-14 23_[-1(6.81e-13)]_15_[-3(4.21e-08)]_\ 11 chrIII:127507-127968 5.71e-18 36_[+2(2.32e-14)]_[+1(6.85e-11)]_4 chrIII:142128-143002 3.48e-01 100 chrIII:162012-163908 5.23e-01 100 chrIII:168091-168620 1.72e-12 1_[-1(2.58e-11)]_15_[-3(7.32e-09)]_\ 33 chrIII:176684-179286 9.28e-01 100 chrIII:227622-228207 1.88e-04 77_[+3(1.66e-07)]_2 chrIII:262697-263049 9.82e-01 100 chrIII:292651-293032 9.99e-01 100 chrIII:293637-296448 4.14e-01 100 chrIII:316273-316620 4.21e-04 50_[+3(3.53e-07)]_29 chrIV:28-351 3.07e-04 21_[-3(3.77e-05)]_28_[-3(3.53e-07)]_\ 9 chrIV:83281-83834 6.39e-07 40_[+3(2.58e-10)]_39 chrIV:116860-118831 7.19e-01 100 chrIV:129505-131007 5.31e-01 100 chrIV:217085-218102 3.53e-01 100 chrIV:221087-222602 8.69e-01 100 chrIV:229415-230720 3.01e-01 100 chrIV:307706-308864 9.89e-01 100 chrIV:309168-309926 1.40e-01 100 chrIV:321640-323558 7.22e-01 100 chrIV:331486-333344 8.72e-01 100 chrIV:340150-341673 3.56e-01 100 chrIV:354731-355830 9.38e-01 100 chrIV:358058-358547 4.95e-01 100 chrIV:359321-359863 2.20e-04 43_[+3(1.21e-05)]_36 chrIV:410131-410701 1.30e-14 12_[+3(1.37e-09)]_16_[+1(4.11e-09)]_\ 21 chrIV:411234-411724 6.00e-02 100 chrIV:415849-417870 9.35e-01 100 chrIV:433990-435421 2.05e-01 100 chrIV:437482-438485 6.59e-01 100 chrIV:449329-450067 9.91e-01 100 chrIV:465045-465862 6.81e-01 100 chrIV:488490-489140 2.26e-12 37_[-1(6.16e-11)]_[-2(7.01e-09)]_3 chrIV:490711-492688 6.68e-01 100 chrIV:519523-521174 7.82e-01 100 chrIV:525035-525424 4.52e-01 100 chrIV:538923-539210 2.49e-01 100 chrIV:540862-542186 8.86e-01 100 chrIV:568478-569257 5.16e-07 64_[+3(1.10e-08)]_15 chrIV:579038-581112 7.01e-01 100 chrIV:591194-592199 3.97e-01 100 chrIV:619664-620228 5.65e-01 100 chrIV:644933-645395 2.31e-07 44_[-1(2.58e-11)]_26 chrIV:667547-668260 2.36e-01 100 chrIV:802478-803037 5.73e-13 29_[-1(2.58e-11)]_15_[-3(7.32e-09)]_\ 5 chrIV:835781-836301 9.08e-02 100 chrIV:884132-884663 3.13e-07 13_[+3(2.25e-09)]_66 chrIV:946143-946667 8.06e-08 9_[+1(2.25e-10)]_61 chrIV:974283-974922 2.68e-01 100 chrIV:975885-976783 6.57e-01 100 chrIV:980754-981276 1.67e-10 53_[-2(1.96e-10)]_17 chrIV:992539-993068 8.36e-08 78_[+3(2.58e-10)]_1 chrIV:1013377-1013952 4.96e-01 100 chrIV:1016951-1017639 2.89e-03 12_[-3(4.61e-07)]_67 chrIV:1062742-1063101 7.66e-01 100 chrIV:1075282-1075766 7.65e-10 3_[-1(8.42e-11)]_16_[-3(5.86e-06)]_\ 30 chrIV:1094960-1095795 1.39e-07 48_[-1(1.63e-11)]_22 chrIV:1150173-1151155 9.54e-01 100 chrIV:1175529-1176209 2.39e-08 46_[+1(5.55e-11)]_24 chrIV:1201234-1202416 9.76e-08 11_[+1(1.29e-11)]_59 chrIV:1256878-1257356 9.00e-01 100 chrIV:1278709-1279097 6.10e-05 6_[+2(1.40e-06)]_64 chrIV:1300038-1301368 4.09e-01 100 chrIV:1305269-1306399 9.71e-01 100 chrIV:1352350-1352746 6.03e-08 3_[-2(2.09e-09)]_67 chrIV:1354421-1356061 5.47e-02 100 chrIV:1359125-1361071 1.65e-01 100 chrIV:1401163-1401972 2.52e-01 100 chrIV:1402199-1403487 9.93e-01 100 chrIV:1450339-1451442 2.57e-01 100 chrIV:1461513-1462276 2.58e-01 100 chrIV:1488874-1490386 4.62e-01 100 chrIV:1524298-1525662 6.82e-02 2_[+3(2.31e-05)]_77 chrIX:1-230 6.85e-01 100 chrIX:68126-69731 9.84e-01 100 chrIX:98211-100046 9.97e-01 100 chrIX:131780-132112 4.07e-01 100 chrIX:174761-175346 7.72e-17 34_[+2(3.43e-12)]_[+1(2.06e-11)]_6 chrIX:183270-183742 1.87e-11 19_[-2(2.31e-13)]_51 chrIX:197335-198099 9.67e-01 100 chrIX:210501-210944 2.00e-19 [+2(2.31e-13)]_[+1(8.08e-14)]_40 chrIX:248584-249473 6.18e-01 100 chrIX:254243-254556 4.11e-01 100 chrIX:257344-258099 8.87e-01 100 chrIX:299836-300639 1.13e-07 46_[-1(1.29e-11)]_24 chrIX:316095-317311 9.47e-01 100 chrIX:323941-324993 2.18e-03 3_[-2(6.98e-05)]_25_[+1(8.81e-05)]_\ 12 chrIX:325499-326111 4.27e-07 29_[+1(2.06e-11)]_41 chrIX:336101-336952 1.98e-01 100 chrIX:370165-370653 6.35e-04 57_[+3(1.57e-06)]_22 chrIX:438638-439885 3.62e-01 100 chrM:58227-58956 9.88e-01 100 chrM:59569-59979 5.71e-01 100 chrM:61105-61496 6.93e-01 100 chrV:6145-6571 4.70e-01 100 chrV:51888-52893 9.93e-01 100 chrV:53521-54486 9.59e-01 100 chrV:60972-62193 5.74e-01 100 chrV:68754-69350 2.66e-01 100 chrV:85110-86890 4.46e-01 100 chrV:99527-100355 4.62e-01 100 chrV:109982-110972 8.59e-01 100 chrV:117486-118344 4.14e-01 100 chrV:130781-131398 5.30e-09 13_[+3(3.27e-05)]_14_[-1(4.48e-11)]_\ 22 chrV:135172-135725 5.02e-16 32_[-1(1.29e-11)]_[-2(2.09e-09)]_8 chrV:138154-141439 9.99e-01 100 chrV:176882-177455 2.43e-06 16_[+1(3.27e-10)]_54 chrV:207074-207899 8.74e-01 100 chrV:250117-251046 4.72e-01 100 chrV:268862-270806 4.62e-01 100 chrV:287438-288778 9.48e-01 100 chrV:303071-303527 8.35e-01 100 chrV:304771-306859 9.76e-01 100 chrV:311790-312304 1.03e-17 31_[-1(3.22e-12)]_[-2(4.39e-09)]_9 chrV:321755-323053 9.74e-01 100 chrV:354679-355468 2.52e-01 100 chrV:362118-362539 4.01e-01 100 chrV:396153-397422 3.91e-01 100 chrV:397638-398052 4.30e-01 100 chrV:405722-406251 1.52e-01 100 chrV:406490-409471 9.04e-01 100 chrV:423069-424034 9.51e-01 100 chrV:430863-431602 4.75e-02 58_[-1(2.36e-05)]_12 chrV:434392-434766 5.64e-05 17_[-1(4.71e-05)]_15_[-3(7.68e-07)]_\ 17 chrV:434934-436067 5.35e-01 100 chrV:438390-438985 1.33e-09 70_[+2(1.74e-11)] chrV:441715-442614 1.09e-03 67_[+2(1.73e-06)]_3 chrV:442862-443530 1.13e-09 61_[-1(8.08e-14)]_9 chrV:469234-469786 1.35e-15 4_[+2(1.74e-11)]_[+1(1.29e-11)]_36 chrV:486832-487621 5.48e-01 100 chrV:492129-492581 9.12e-06 52_[-1(2.26e-09)]_18 chrV:504512-505311 4.61e-01 100 chrV:522615-523015 6.41e-01 100 chrV:550969-551656 7.36e-22 28_[-1(8.08e-14)]_[-2(2.31e-13)]_12 chrVI:4471-6212 5.79e-01 100 chrVI:63920-65390 8.28e-01 100 chrVI:82441-84631 2.38e-01 100 chrVI:95460-95862 1.80e-01 100 chrVI:101112-101659 1.70e-06 40_[+3(4.67e-10)]_39 chrVI:137137-137929 5.71e-18 8_[-1(6.85e-11)]_[-2(2.32e-14)]_32 chrVI:157664-158483 8.96e-01 100 chrVI:161730-162465 4.61e-01 100 chrVI:167249-167698 2.59e-11 22_[+2(3.76e-08)]_14_[+1(2.25e-10)]_\ 4 chrVI:180665-181392 4.99e-14 1_[-1(5.55e-11)]_14_[-3(2.58e-10)]_\ 34 chrVI:191267-191835 5.54e-01 100 chrVI:204727-205191 1.30e-14 20_[-1(4.11e-09)]_16_[-3(1.37e-09)]_\ 13 chrVI:210425-210894 1.77e-11 15_[-1(2.25e-10)]_14_[-2(3.76e-08)]_\ 11 chrVI:221458-222097 1.95e-01 100 chrVI:223762-224154 1.06e-01 100 chrVI:226476-226994 5.02e-16 8_[-1(1.29e-11)]_[-2(2.09e-09)]_32 chrVI:268694-270160 1.50e-01 100 chrVII:11-203 4.74e-04 34_[-3(2.22e-07)]_45 chrVII:391-1972 6.95e-01 100 chrVII:73690-74497 9.70e-01 100 chrVII:84133-84609 2.45e-01 100 chrVII:110401-110933 5.64e-05 13_[-1(4.71e-05)]_15_[-3(7.68e-07)]_\ 21 chrVII:115202-115951 4.74e-08 21_[+1(1.45e-11)]_49 chrVII:122013-122721 6.80e-01 100 chrVII:147104-149549 3.33e-01 100 chrVII:185242-186076 5.28e-01 100 chrVII:205291-205743 2.67e-08 61_[+2(1.23e-09)]_9 chrVII:228474-228801 6.43e-01 100 chrVII:254034-254700 5.20e-01 100 chrVII:255202-255684 5.25e-01 100 chrVII:277031-278756 1.72e-01 100 chrVII:286952-287920 1.43e-03 48_[-3(1.57e-06)]_31 chrVII:310429-312224 9.99e-01 100 chrVII:319597-320384 4.66e-01 100 chrVII:327804-329021 1.66e-01 100 chrVII:345853-347035 5.78e-01 100 chrVII:352322-352735 4.32e-01 100 chrVII:364883-366709 9.70e-01 100 chrVII:371241-371463 4.44e-02 100 chrVII:399442-401775 8.01e-01 100 chrVII:405300-405795 9.59e-09 8_[+1(1.41e-12)]_62 chrVII:412111-412595 6.38e-10 26_[-2(1.74e-11)]_44 chrVII:422884-423546 1.16e-01 100 chrVII:437193-440085 1.58e-01 100 chrVII:440285-441525 6.27e-01 100 chrVII:479118-483019 3.76e-01 100 chrVII:483276-483786 2.31e-01 100 chrVII:496342-497558 9.94e-01 100 chrVII:531424-532623 7.63e-01 100 chrVII:533426-535234 5.98e-01 100 chrVII:535458-535824 9.40e-01 100 chrVII:541597-542192 4.88e-10 5_[+3(1.57e-06)]_15_[+1(3.27e-10)]_\ 29 chrVII:544329-546166 9.41e-01 100 chrVII:554846-558413 6.72e-01 100 chrVII:561388-561966 5.20e-01 100 chrVII:609288-610084 9.85e-01 100 chrVII:648774-649440 7.18e-01 100 chrVII:661315-662340 9.56e-07 7_[+1(2.84e-09)]_63 chrVII:700190-701270 2.68e-07 2_[+2(2.09e-09)]_8_[+1(3.61e-05)]_\ 30 chrVII:706927-707349 3.01e-11 25_[-1(5.10e-09)]_15_[-3(7.32e-09)]_\ 9 chrVII:726243-727198 5.05e-01 100 chrVII:730904-731444 5.71e-18 20_[+2(2.32e-14)]_[+1(6.85e-11)]_20 chrVII:736178-736768 5.73e-01 100 chrVII:738435-739435 7.64e-01 100 chrVII:773966-774627 4.54e-01 100 chrVII:779355-779866 1.16e-06 55_[+3(1.35e-10)]_24 chrVII:787447-788788 9.22e-01 100 chrVII:794021-794649 9.44e-01 100 chrVII:806150-806484 9.93e-01 100 chrVII:823250-823704 6.38e-10 62_[+2(1.74e-11)]_8 chrVII:828452-829026 1.50e-10 39_[-1(1.41e-12)]_[-2(2.20e-05)]_1 chrVII:845365-845940 4.68e-06 46_[+3(2.58e-10)]_33 chrVII:856749-856966 1.62e-02 14_[+1(5.30e-05)]_56 chrVII:857216-857640 1.79e-01 100 chrVII:875826-876733 1.55e-01 100 chrVII:878452-879447 2.68e-01 100 chrVII:882328-884431 6.02e-01 100 chrVII:914730-915225 1.05e-01 60_[-2(6.98e-05)]_10 chrVII:919844-920231 8.20e-01 100 chrVII:930625-931246 2.86e-01 100 chrVII:1000338-1000597 4.03e-01 100 chrVII:1004041-1004418 2.88e-04 36_[+3(3.23e-07)]_43 chrVII:1052293-1052659 9.26e-02 100 chrVII:1059717-1060588 5.58e-01 100 chrVIII:34404-36445 2.57e-02 100 chrVIII:62540-63233 9.80e-01 100 chrVIII:63447-63641 5.38e-01 100 chrVIII:74913-76259 4.24e-01 100 chrVIII:85032-85585 4.51e-08 45_[-1(1.29e-11)]_25 chrVIII:103873-104404 2.14e-02 22_[-2(8.76e-05)]_48 chrVIII:115844-116487 5.75e-09 27_[-2(3.43e-12)]_43 chrVIII:125892-126909 5.93e-01 100 chrVIII:132821-135136 1.92e-01 100 chrVIII:145864-146463 9.79e-01 100 chrVIII:147871-149571 4.76e-01 100 chrVIII:175054-175378 6.77e-02 100 chrVIII:237429-238162 5.52e-01 100 chrVIII:296808-297265 1.73e-01 100 chrVIII:358216-358849 3.06e-11 1_[-1(1.26e-10)]_35_[-3(5.03e-07)]_\ 13 chrVIII:381206-383535 3.18e-01 100 chrVIII:388459-389255 2.64e-01 100 chrVIII:410509-410746 7.24e-01 100 chrVIII:410924-412043 3.96e-01 100 chrVIII:466750-467284 1.19e-09 22_[+3(3.23e-07)]_15_[+1(1.52e-09)]_\ 12 chrVIII:475310-475927 9.84e-01 100 chrVIII:488303-488584 3.60e-01 100 chrVIII:505798-506299 9.22e-01 100 chrVIII:555936-557200 6.24e-01 100 chrVIII:562289-562578 4.60e-01 100 chrX:58646-59618 7.72e-17 23_[-1(2.06e-11)]_[-2(3.43e-12)]_17 chrX:72856-76783 9.47e-01 100 chrX:90006-90451 8.57e-01 100 chrX:115574-116201 7.43e-01 100 chrX:139106-141506 5.39e-01 100 chrX:156252-157967 4.13e-01 100 chrX:159888-160320 1.36e-01 100 chrX:172764-173415 3.72e-01 100 chrX:197115-197627 6.65e-09 43_[-3(1.37e-09)]_36 chrX:204363-204968 6.62e-01 100 chrX:227758-228784 6.74e-01 100 chrX:233701-234837 5.49e-01 100 chrX:353968-354817 8.32e-01 100 chrX:355086-355770 1.26e-13 1_[+2(2.20e-05)]_[+1(1.41e-12)]_16_\ [+3(1.82e-06)]_2 chrX:374183-374775 2.91e-04 45_[-3(1.82e-06)]_34 chrX:377680-378785 9.52e-01 100 chrX:390747-391319 4.28e-08 65_[-1(5.55e-11)]_5 chrX:391858-392107 2.09e-01 100 chrX:396519-397047 1.49e-06 42_[-3(2.58e-10)]_37 chrX:414782-415318 1.15e-07 2_[+1(1.29e-11)]_68 chrX:415724-416617 6.22e-01 100 chrX:422527-423264 9.61e-01 100 chrX:424295-424773 2.61e-04 10_[-3(1.06e-06)]_69 chrX:517048-517211 5.99e-01 100 chrX:517490-518201 7.05e-10 23_[-1(1.52e-09)]_15_[-3(2.44e-06)]_\ 11 chrX:523642-524434 5.00e-07 68_[-2(1.96e-10)]_2 chrX:531375-532205 9.90e-01 100 chrX:538320-539183 4.27e-01 100 chrX:541128-541780 9.93e-01 100 chrX:542740-543523 9.05e-02 42_[+3(3.95e-05)]_37 chrX:607828-609077 1.09e-01 100 chrX:617747-618186 1.61e-11 10_[+2(7.34e-11)]_60 chrX:651149-651616 9.24e-01 100 chrX:663488-664417 8.86e-01 100 chrX:690561-690825 1.32e-01 100 chrX:702564-703664 1.44e-01 100 chrX:745280-745741 5.24e-02 4_[+3(8.60e-05)]_75 chrXI:0-1019 2.50e-03 26_[-3(2.62e-06)]_53 chrXI:24864-26540 4.51e-01 100 chrXI:46495-47016 3.89e-13 35_[-1(6.17e-12)]_[-2(1.05e-07)]_5 chrXI:67632-68393 2.22e-03 36_[+3(5.49e-06)]_43 chrXI:74377-74956 5.71e-18 15_[+2(2.32e-14)]_[+1(6.85e-11)]_25 chrXI:83865-84436 8.70e-02 25_[+3(8.26e-05)]_54 chrXI:99729-100025 1.35e-01 100 chrXI:108600-109160 5.12e-01 100 chrXI:140734-141907 1.00e+00 100 chrXI:158174-159670 9.98e-01 100 chrXI:162018-162841 5.79e-01 100 chrXI:202188-202441 9.11e-01 100 chrXI:202834-203318 2.65e-08 9_[+1(1.29e-11)]_61 chrXI:219254-220134 9.25e-01 100 chrXI:258453-259507 7.53e-01 100 chrXI:302669-303231 6.02e-04 17_[+3(1.57e-06)]_62 chrXI:307925-308592 7.96e-01 100 chrXI:312864-313727 3.61e-01 100 chrXI:322464-322712 1.41e-01 100 chrXI:325788-327205 7.89e-01 100 chrXI:379499-379928 8.68e-18 24_[+2(1.74e-11)]_[+1(1.29e-11)]_16 chrXI:382158-382470 3.23e-01 100 chrXI:430349-431689 8.03e-01 100 chrXI:458337-459101 6.40e-01 100 chrXI:490486-491280 7.20e-01 100 chrXI:513215-514230 9.66e-01 100 chrXI:517763-518159 2.22e-05 76_[+3(1.37e-09)]_3 chrXI:518877-519580 9.95e-01 100 chrXI:520125-521052 8.06e-01 100 chrXI:578751-579305 3.29e-08 46_[+1(1.45e-11)]_24 chrXI:617697-619363 9.25e-01 100 chrXI:665617-666798 1.06e-01 100 chrXII:6-258 1.97e-01 100 chrXII:5483-5929 1.32e-01 100 chrXII:11014-12009 1.86e-02 51_[-3(8.60e-05)]_4_[-3(4.96e-05)]_\ 3 chrXII:48636-49118 7.51e-01 100 chrXII:65407-65667 6.77e-01 100 chrXII:84069-84534 1.47e-02 45_[-2(1.21e-05)]_25 chrXII:86818-87194 2.01e-01 100 chrXII:92294-92883 1.86e-06 9_[+3(4.67e-10)]_70 chrXII:167536-168319 8.32e-01 100 chrXII:198650-199645 4.07e-01 100 chrXII:214654-215185 1.03e-17 19_[-1(3.22e-12)]_[-2(4.39e-09)]_21 chrXII:231795-234241 1.60e-01 100 chrXII:241457-242770 3.46e-01 100 chrXII:262731-264067 6.55e-01 100 chrXII:282473-283858 8.38e-01 100 chrXII:340894-341229 6.91e-01 100 chrXII:348073-348837 6.76e-01 100 chrXII:365864-366589 1.84e-01 100 chrXII:370505-371081 6.35e-02 100 chrXII:374199-374720 9.10e-01 100 chrXII:424134-424477 5.94e-02 100 chrXII:426917-427525 4.63e-01 100 chrXII:448507-449003 9.75e-01 100 chrXII:459631-460684 1.53e-01 100 chrXII:489294-489559 6.66e-05 42_[+3(4.21e-08)]_37 chrXII:498026-499697 1.00e+00 100 chrXII:522135-523596 5.08e-01 100 chrXII:588259-589343 1.46e-01 100 chrXII:592315-593152 7.95e-01 100 chrXII:605158-605627 3.13e-07 69_[-3(2.25e-09)]_10 chrXII:628137-628925 5.91e-01 100 chrXII:636458-640331 3.36e-01 100 chrXII:650309-651283 8.09e-01 100 chrXII:656678-658043 7.52e-02 100 chrXII:672646-674507 7.06e-01 100 chrXII:687621-688515 7.51e-01 100 chrXII:710203-711451 1.85e-01 100 chrXII:712775-713578 1.07e-01 100 chrXII:731870-732267 2.73e-04 71_[+3(1.83e-07)]_8 chrXII:734694-734997 7.36e-22 14_[+2(2.31e-13)]_[+1(8.08e-14)]_26 chrXII:780782-781898 5.71e-01 100 chrXII:784139-784562 2.95e-08 60_[+2(1.11e-07)]_10 chrXII:796136-797436 8.49e-01 100 chrXII:805393-807164 5.30e-01 100 chrXII:817568-820563 9.66e-01 100 chrXII:837629-839431 2.55e-01 100 chrXII:855409-857566 1.00e-01 100 chrXII:875208-875675 3.29e-08 44_[+1(1.45e-11)]_26 chrXII:897638-899658 5.14e-01 100 chrXII:903396-903669 9.29e-01 100 chrXII:921438-922691 5.44e-01 100 chrXII:932059-932525 8.52e-01 100 chrXII:962845-963333 9.47e-01 100 chrXII:975690-976281 4.48e-07 53_[-1(6.85e-11)]_17 chrXII:1017691-1019425 5.90e-01 100 chrXII:1028136-1028625 7.21e-01 100 chrXII:1051906-1052500 8.65e-01 100 chrXII:1064060-1065374 1.73e-02 100 chrXIII:20-179 6.47e-01 100 chrXIII:5323-5759 4.72e-02 100 chrXIII:23726-25930 4.53e-01 100 chrXIII:91633-92102 6.85e-02 100 chrXIII:123967-124727 5.89e-01 100 chrXIII:131446-132327 5.16e-07 39_[-3(1.10e-08)]_40 chrXIII:145831-146485 7.47e-01 100 chrXIII:146734-147224 2.26e-01 100 chrXIII:161898-162657 4.82e-01 100 chrXIII:162934-164005 8.69e-01 100 chrXIII:168576-169070 1.72e-05 30_[+2(3.76e-08)]_40 chrXIII:183701-184178 1.73e-14 14_[-1(5.55e-11)]_14_[-3(2.58e-10)]_\ 21 chrXIII:195830-196418 1.86e-06 75_[-3(4.67e-10)]_4 chrXIII:222608-224420 8.15e-01 100 chrXIII:225332-227029 2.31e-01 100 chrXIII:258982-259794 8.48e-01 100 chrXIII:267640-268606 6.40e-01 100 chrXIII:288261-290035 7.86e-01 100 chrXIII:290232-291390 1.55e-03 39_[+3(1.57e-06)]_40 chrXIII:296747-299587 9.32e-01 100 chrXIII:302392-302623 8.26e-01 100 chrXIII:302786-303201 3.59e-01 100 chrXIII:320945-321677 5.19e-01 100 chrXIII:352058-352442 2.68e-04 79_[+3(5.03e-07)] chrXIII:362835-363322 2.75e-03 35_[+3(7.68e-07)]_44 chrXIII:372176-372745 1.35e-15 40_[-1(1.29e-11)]_[-2(1.74e-11)] chrXIII:378774-379619 7.91e-01 100 chrXIII:420313-420921 8.68e-18 26_[-1(1.29e-11)]_[-2(1.74e-11)]_14 chrXIII:433526-433795 1.45e-01 100 chrXIII:463190-463961 5.15e-04 28_[+3(1.82e-06)]_51 chrXIII:480217-480993 5.29e-01 100 chrXIII:481273-481719 6.55e-01 100 chrXIII:504309-505371 8.17e-01 100 chrXIII:550733-553220 2.00e-01 100 chrXIII:572660-573434 6.20e-01 100 chrXIII:586390-587041 1.30e-09 6_[-2(1.74e-11)]_64 chrXIII:626160-626881 1.03e-02 36_[+1(6.11e-05)]_34 chrXIII:650754-652891 6.32e-01 100 chrXIII:731750-733525 6.16e-01 100 chrXIII:747710-748372 1.49e-01 100 chrXIII:754387-755019 9.37e-01 100 chrXIII:761528-761695 4.52e-01 100 chrXIII:761865-763100 5.09e-01 100 chrXIII:767319-768680 4.46e-01 100 chrXIII:807997-808559 2.30e-13 23_[-1(2.30e-11)]_15_[-3(7.32e-09)]_\ 11 chrXIII:837598-838415 7.34e-07 24_[+1(2.25e-10)]_46 chrXIII:861185-861440 7.32e-01 100 chrXIII:872666-872944 7.97e-01 100 chrXIII:923113-924376 5.55e-01 100 chrXIV:6494-7171 3.79e-02 68_[-3(8.60e-05)]_11 chrXIV:61576-64810 3.59e-01 100 chrXIV:88863-90146 4.72e-02 100 chrXIV:96007-96559 2.71e-13 13_[-1(2.44e-09)]_15_[-3(1.35e-10)]_\ 21 chrXIV:102486-103073 4.48e-07 24_[+1(6.85e-11)]_46 chrXIV:104617-105150 3.14e-07 8_[+1(2.06e-11)]_62 chrXIV:216731-217637 8.55e-01 100 chrXIV:229393-230852 5.73e-01 100 chrXIV:241357-241736 5.93e-01 100 chrXIV:330341-332476 9.30e-01 100 chrXIV:351770-352930 9.88e-01 100 chrXIV:374711-375325 6.05e-01 100 chrXIV:413530-416065 3.91e-01 100 chrXIV:442795-444887 5.44e-01 100 chrXIV:493336-495614 1.52e-01 100 chrXIV:499125-501785 9.38e-01 100 chrXIV:546942-547380 1.37e-06 49_[+1(4.68e-10)]_21 chrXIV:560133-560296 2.77e-01 100 chrXIV:560524-561157 3.80e-01 100 chrXIV:567867-568626 8.63e-01 100 chrXIV:569577-570144 5.50e-10 62_[-1(8.08e-14)]_8 chrXIV:575160-575865 8.37e-01 100 chrXIV:585401-586635 9.77e-01 100 chrXIV:602207-602547 5.50e-10 22_[+1(8.08e-14)]_48 chrXIV:631611-632218 9.21e-05 32_[-3(4.21e-08)]_47 chrXIV:632398-632952 2.70e-07 11_[+1(6.85e-11)]_59 chrXIV:715996-716702 9.86e-01 100 chrXIV:725971-726429 1.30e-10 29_[-2(2.96e-10)]_41 chrXIV:783354-784319 3.29e-04 9_[+3(3.86e-07)]_27_[+3(8.60e-05)]_\ 22 chrXV:3-1013 1.51e-03 66_[-3(1.96e-06)]_13 chrXV:43227-43665 7.77e-01 100 chrXV:79564-81124 7.33e-01 100 chrXV:87429-88121 9.96e-01 100 chrXV:92044-94891 5.03e-01 100 chrXV:109555-111280 2.80e-01 100 chrXV:113490-114144 5.75e-09 41_[+2(3.43e-12)]_29 chrXV:159385-160225 2.34e-01 100 chrXV:161114-161434 4.80e-01 100 chrXV:167705-168463 9.94e-01 100 chrXV:216242-216696 4.50e-01 100 chrXV:226292-226928 2.24e-08 56_[-1(5.55e-11)]_14 chrXV:228050-228633 3.65e-11 47_[+2(2.32e-14)]_23 chrXV:253504-254140 4.37e-01 100 chrXV:274471-274998 5.54e-01 100 chrXV:281677-282567 3.76e-01 100 chrXV:287781-288467 2.95e-02 31_[+1(5.45e-05)]_39 chrXV:300632-301403 2.29e-01 100 chrXV:340073-340610 4.77e-13 13_[-1(2.26e-09)]_[-2(7.56e-09)]_27 chrXV:353774-354910 7.07e-01 100 chrXV:407809-408205 2.46e-01 100 chrXV:424353-424743 4.31e-01 100 chrXV:425019-425765 5.15e-01 100 chrXV:438392-439204 6.06e-01 100 chrXV:444596-446184 3.77e-02 100 chrXV:463799-464693 9.85e-01 100 chrXV:487203-487707 6.79e-12 41_[+2(2.32e-14)]_29 chrXV:504979-505517 2.81e-01 100 chrXV:571578-572225 9.96e-01 100 chrXV:594137-594702 1.33e-05 35_[-3(1.37e-09)]_44 chrXV:618750-624720 2.70e-01 100 chrXV:663535-664489 1.82e-01 100 chrXV:677881-679306 9.58e-01 100 chrXV:709973-710683 9.96e-01 100 chrXV:724800-725598 9.93e-01 100 chrXV:779683-780965 7.35e-01 100 chrXV:796949-797812 9.45e-01 100 chrXV:832280-832808 6.75e-01 100 chrXV:853999-854430 1.03e-17 28_[-1(3.22e-12)]_[-2(4.39e-09)]_12 chrXV:866533-867224 4.17e-01 100 chrXV:882104-882818 3.63e-01 100 chrXV:901459-901771 9.27e-01 100 chrXV:903940-905149 5.86e-01 100 chrXV:925221-925409 6.04e-01 100 chrXV:967915-968496 6.53e-03 100 chrXV:976187-976761 1.33e-07 33_[+1(5.55e-11)]_37 chrXV:977957-979147 1.57e-01 100 chrXV:980479-981389 9.04e-01 100 chrXV:1003897-1005003 9.86e-01 100 chrXV:1025284-1026230 6.36e-01 100 chrXV:1027537-1029137 9.37e-02 100 chrXVI:55695-56522 8.64e-02 100 chrXVI:75808-76745 3.88e-01 100 chrXVI:135336-135855 2.21e-01 100 chrXVI:172828-174134 4.16e-01 100 chrXVI:188610-189043 3.89e-01 100 chrXVI:209554-210748 6.51e-01 100 chrXVI:280649-282806 9.42e-01 100 chrXVI:302536-303857 8.51e-01 100 chrXVI:338262-339437 1.40e-05 54_[-1(1.52e-09)]_16 chrXVI:352255-352858 3.34e-01 100 chrXVI:377875-378490 2.29e-01 100 chrXVI:378664-379034 2.60e-01 100 chrXVI:404516-405859 1.07e-01 100 chrXVI:406133-407779 8.09e-01 100 chrXVI:425125-425548 8.39e-01 100 chrXVI:435620-436539 8.40e-03 17_[+3(3.23e-06)]_62 chrXVI:515119-517137 4.03e-01 100 chrXVI:520159-520672 3.33e-01 100 chrXVI:559984-560519 3.06e-11 2_[-1(1.26e-10)]_35_[-3(5.03e-07)]_\ 12 chrXVI:571908-572849 6.36e-02 100 chrXVI:575174-575607 8.78e-01 100 chrXVI:581687-582415 6.03e-08 67_[+2(2.09e-09)]_3 chrXVI:622274-622820 1.11e-06 48_[-1(1.26e-10)]_22 chrXVI:645263-645949 9.56e-04 48_[+2(1.75e-05)]_22 chrXVI:653812-655031 7.77e-01 100 chrXVI:689305-689884 1.26e-11 27_[+2(1.34e-11)]_43 chrXVI:699902-700741 2.20e-01 100 chrXVI:701856-702401 3.00e-01 100 chrXVI:718337-719394 9.13e-01 100 chrXVI:731651-732388 3.52e-01 100 chrXVI:744042-744759 2.81e-01 100 chrXVI:768550-768780 6.04e-01 100 chrXVI:768952-769513 3.29e-08 30_[-1(1.45e-11)]_40 chrXVI:775628-776294 6.65e-01 100 chrXVI:794365-796133 8.32e-01 100 chrXVI:810427-811032 1.60e-17 4_[+2(2.32e-14)]_[+1(6.85e-11)]_36 chrXVI:819319-819827 7.36e-22 13_[+2(2.31e-13)]_[+1(8.08e-14)]_27 chrXVI:856743-857331 4.75e-01 100 chrXVI:859282-860645 9.56e-01 100 chrXVI:880068-880898 8.67e-02 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************