******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--NOT3/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:8-1095 1.0000 100 chrI:81853-82292 1.0000 100 chrI:138804-139391 1.0000 100 chrI:141631-141892 1.0000 100 chrI:166035-166652 1.0000 100 chrI:180890-181481 1.0000 100 chrI:182344-183155 1.0000 100 chrI:229260-230190 1.0000 100 chrII:9355-10003 1.0000 100 chrII:36150-36561 1.0000 100 chrII:44924-45340 1.0000 100 chrII:60175-61324 1.0000 100 chrII:88053-88546 1.0000 100 chrII:89663-89980 1.0000 100 chrII:167656-168215 1.0000 100 chrII:170604-171201 1.0000 100 chrII:181326-181628 1.0000 100 chrII:196696-198337 1.0000 100 chrII:226836-227381 1.0000 100 chrII:265540-266744 1.0000 100 chrII:326550-327198 1.0000 100 chrII:332260-334559 1.0000 100 chrII:347389-348018 1.0000 100 chrII:350383-351165 1.0000 100 chrII:405094-406252 1.0000 100 chrII:415514-415896 1.0000 100 chrII:477019-477737 1.0000 100 chrII:544440-544853 1.0000 100 chrII:592386-593551 1.0000 100 chrII:604095-605121 1.0000 100 chrII:605608-607044 1.0000 100 chrII:642875-643361 1.0000 100 chrII:644939-645847 1.0000 100 chrII:681363-682185 1.0000 100 chrIII:7-1369 1.0000 100 chrIII:14066-16585 1.0000 100 chrIII:82119-82777 1.0000 100 chrIII:123407-123799 1.0000 100 chrIII:127514-127874 1.0000 100 chrIII:142353-143395 1.0000 100 chrIII:163432-163890 1.0000 100 chrIII:168072-168628 1.0000 100 chrIII:168939-169210 1.0000 100 chrIII:177098-178778 1.0000 100 chrIII:227691-228191 1.0000 100 chrIII:262732-262968 1.0000 100 chrIII:293719-294442 1.0000 100 chrIII:294967-295949 1.0000 100 chrIII:316149-316617 1.0000 100 chrIV:31-382 1.0000 100 chrIV:83262-83830 1.0000 100 chrIV:116785-118221 1.0000 100 chrIV:129968-131040 1.0000 100 chrIV:217093-218060 1.0000 100 chrIV:220963-222366 1.0000 100 chrIV:229420-230354 1.0000 100 chrIV:308010-308906 1.0000 100 chrIV:321556-321935 1.0000 100 chrIV:322191-323590 1.0000 100 chrIV:340300-341712 1.0000 100 chrIV:357981-358482 1.0000 100 chrIV:359254-359863 1.0000 100 chrIV:410141-410673 1.0000 100 chrIV:411252-411681 1.0000 100 chrIV:434036-435071 1.0000 100 chrIV:437472-438529 1.0000 100 chrIV:488390-489119 1.0000 100 chrIV:490442-491252 1.0000 100 chrIV:508115-509522 1.0000 100 chrIV:519528-521401 1.0000 100 chrIV:540787-541844 1.0000 100 chrIV:568495-569792 1.0000 100 chrIV:579014-580916 1.0000 100 chrIV:619637-620328 1.0000 100 chrIV:644941-645512 1.0000 100 chrIV:667705-668249 1.0000 100 chrIV:802539-803031 1.0000 100 chrIV:835756-836224 1.0000 100 chrIV:884155-884622 1.0000 100 chrIV:946138-946595 1.0000 100 chrIV:974351-974683 1.0000 100 chrIV:980741-981274 1.0000 100 chrIV:992599-993470 1.0000 100 chrIV:1012642-1013924 1.0000 100 chrIV:1016901-1017661 1.0000 100 chrIV:1075299-1075804 1.0000 100 chrIV:1095007-1095749 1.0000 100 chrIV:1150223-1151898 1.0000 100 chrIV:1175571-1176233 1.0000 100 chrIV:1200966-1202369 1.0000 100 chrIV:1233339-1234112 1.0000 100 chrIV:1256865-1257313 1.0000 100 chrIV:1300902-1301343 1.0000 100 chrIV:1305227-1305904 1.0000 100 chrIV:1352295-1352753 1.0000 100 chrIV:1355739-1356128 1.0000 100 chrIV:1359185-1360208 1.0000 100 chrIV:1401216-1401960 1.0000 100 chrIV:1450562-1451293 1.0000 100 chrIV:1461523-1462335 1.0000 100 chrIV:1525380-1525667 1.0000 100 chrIX:2-262 1.0000 100 chrIX:67005-69022 1.0000 100 chrIX:99624-100081 1.0000 100 chrIX:174797-175254 1.0000 100 chrIX:183088-183846 1.0000 100 chrIX:197022-198151 1.0000 100 chrIX:210502-211210 1.0000 100 chrIX:231270-232312 1.0000 100 chrIX:248605-249020 1.0000 100 chrIX:254239-254534 1.0000 100 chrIX:257358-258149 1.0000 100 chrIX:299208-299566 1.0000 100 chrIX:300014-300886 1.0000 100 chrIX:316088-317279 1.0000 100 chrIX:324013-324617 1.0000 100 chrIX:325385-326276 1.0000 100 chrIX:336130-336794 1.0000 100 chrIX:370139-370675 1.0000 100 chrIX:438512-439884 1.0000 100 chrM:58232-58694 1.0000 100 chrV:6143-6661 1.0000 100 chrV:52015-52832 1.0000 100 chrV:53526-54353 1.0000 100 chrV:61056-62200 1.0000 100 chrV:85162-85436 1.0000 100 chrV:86425-86834 1.0000 100 chrV:99798-100350 1.0000 100 chrV:101172-101544 1.0000 100 chrV:109881-110087 1.0000 100 chrV:110290-111071 1.0000 100 chrV:117813-118346 1.0000 100 chrV:130833-131415 1.0000 100 chrV:135155-135718 1.0000 100 chrV:138202-138965 1.0000 100 chrV:139619-140901 1.0000 100 chrV:151686-151905 1.0000 100 chrV:152177-152677 1.0000 100 chrV:176647-177508 1.0000 100 chrV:206760-207762 1.0000 100 chrV:250107-251428 1.0000 100 chrV:270380-270673 1.0000 100 chrV:287472-288789 1.0000 100 chrV:305309-306903 1.0000 100 chrV:311810-312323 1.0000 100 chrV:322007-323010 1.0000 100 chrV:354669-355324 1.0000 100 chrV:362103-362470 1.0000 100 chrV:363700-364416 1.0000 100 chrV:396163-397959 1.0000 100 chrV:406130-408285 1.0000 100 chrV:408483-409249 1.0000 100 chrV:423054-423508 1.0000 100 chrV:430976-431591 1.0000 100 chrV:434387-436065 1.0000 100 chrV:438067-439007 1.0000 100 chrV:441758-442656 1.0000 100 chrV:442952-443518 1.0000 100 chrV:449285-460269 1.0000 100 chrV:460503-461456 1.0000 100 chrV:462370-462885 1.0000 100 chrV:463077-473092 1.0000 100 chrV:475220-482896 1.0000 100 chrV:483327-487878 1.0000 100 chrV:488097-490939 1.0000 100 chrV:491177-492785 1.0000 100 chrV:498459-499221 1.0000 100 chrV:551024-551856 1.0000 100 chrVI:4460-5423 1.0000 100 chrVI:64159-65414 1.0000 100 chrVI:83806-84533 1.0000 100 chrVI:95471-95852 1.0000 100 chrVI:100977-101711 1.0000 100 chrVI:133855-134611 1.0000 100 chrVI:137107-137946 1.0000 100 chrVI:157570-158606 1.0000 100 chrVI:161978-162459 1.0000 100 chrVI:167218-167723 1.0000 100 chrVI:180595-181281 1.0000 100 chrVI:190762-191846 1.0000 100 chrVI:204771-205640 1.0000 100 chrVI:210434-210913 1.0000 100 chrVI:221756-222133 1.0000 100 chrVI:223928-224154 1.0000 100 chrVI:226560-226970 1.0000 100 chrVI:269767-270156 1.0000 100 chrVII:517-1108 1.0000 100 chrVII:73640-74175 1.0000 100 chrVII:110404-110943 1.0000 100 chrVII:115220-115760 1.0000 100 chrVII:121976-122534 1.0000 100 chrVII:148529-149782 1.0000 100 chrVII:185278-186042 1.0000 100 chrVII:205007-205767 1.0000 100 chrVII:254032-254565 1.0000 100 chrVII:276926-277403 1.0000 100 chrVII:286149-287805 1.0000 100 chrVII:288054-288235 1.0000 100 chrVII:310358-311957 1.0000 100 chrVII:316923-317357 1.0000 100 chrVII:319583-320293 1.0000 100 chrVII:328312-329262 1.0000 100 chrVII:364912-366656 1.0000 100 chrVII:400785-401779 1.0000 100 chrVII:405266-405732 1.0000 100 chrVII:412123-412612 1.0000 100 chrVII:422873-423549 1.0000 100 chrVII:438594-438910 1.0000 100 chrVII:439103-439810 1.0000 100 chrVII:440299-441426 1.0000 100 chrVII:531409-531795 1.0000 100 chrVII:534472-535233 1.0000 100 chrVII:541600-542221 1.0000 100 chrVII:544390-546119 1.0000 100 chrVII:554788-556708 1.0000 100 chrVII:561027-561967 1.0000 100 chrVII:648201-648449 1.0000 100 chrVII:648763-649425 1.0000 100 chrVII:661267-661964 1.0000 100 chrVII:662163-662423 1.0000 100 chrVII:700192-701348 1.0000 100 chrVII:706916-707338 1.0000 100 chrVII:726393-726781 1.0000 100 chrVII:730913-731427 1.0000 100 chrVII:736179-736648 1.0000 100 chrVII:738478-739364 1.0000 100 chrVII:774039-774603 1.0000 100 chrVII:778243-779905 1.0000 100 chrVII:788301-788781 1.0000 100 chrVII:794043-794688 1.0000 100 chrVII:823241-823679 1.0000 100 chrVII:828334-829152 1.0000 100 chrVII:835847-836402 1.0000 100 chrVII:845301-845888 1.0000 100 chrVII:857257-857654 1.0000 100 chrVII:876020-876742 1.0000 100 chrVII:878637-879266 1.0000 100 chrVII:914873-915185 1.0000 100 chrVII:930741-931263 1.0000 100 chrVII:1004005-1004411 1.0000 100 chrVIII:62490-63044 1.0000 100 chrVIII:74887-75519 1.0000 100 chrVIII:85039-85585 1.0000 100 chrVIII:103878-104291 1.0000 100 chrVIII:115976-116450 1.0000 100 chrVIII:125884-126323 1.0000 100 chrVIII:132777-134656 1.0000 100 chrVIII:145920-146455 1.0000 100 chrVIII:147488-147696 1.0000 100 chrVIII:147893-148710 1.0000 100 chrVIII:148941-149348 1.0000 100 chrVIII:175069-175376 1.0000 100 chrVIII:214140-214363 1.0000 100 chrVIII:237744-238165 1.0000 100 chrVIII:296770-297256 1.0000 100 chrVIII:358245-359248 1.0000 100 chrVIII:375356-375866 1.0000 100 chrVIII:381503-383421 1.0000 100 chrVIII:388666-389228 1.0000 100 chrVIII:411091-411860 1.0000 100 chrVIII:466659-467382 1.0000 100 chrVIII:475295-475909 1.0000 100 chrVIII:488356-488632 1.0000 100 chrVIII:505828-506227 1.0000 100 chrVIII:553499-553877 1.0000 100 chrVIII:555945-557216 1.0000 100 chrVIII:562242-562573 1.0000 100 chrX:58711-59525 1.0000 100 chrX:73113-74270 1.0000 100 chrX:74898-76464 1.0000 100 chrX:90014-90436 1.0000 100 chrX:115427-116253 1.0000 100 chrX:139204-140247 1.0000 100 chrX:157440-157956 1.0000 100 chrX:172724-173028 1.0000 100 chrX:197132-197630 1.0000 100 chrX:204321-205003 1.0000 100 chrX:227822-229034 1.0000 100 chrX:233676-234547 1.0000 100 chrX:353636-354592 1.0000 100 chrX:355111-355730 1.0000 100 chrX:374187-374896 1.0000 100 chrX:377808-378587 1.0000 100 chrX:390853-391355 1.0000 100 chrX:396523-397107 1.0000 100 chrX:414787-415358 1.0000 100 chrX:415815-416447 1.0000 100 chrX:422006-423686 1.0000 100 chrX:424327-424769 1.0000 100 chrX:517645-518216 1.0000 100 chrX:523764-524455 1.0000 100 chrX:531489-532153 1.0000 100 chrX:538321-538815 1.0000 100 chrX:541295-541833 1.0000 100 chrX:542770-543839 1.0000 100 chrX:554637-554896 1.0000 100 chrX:607817-608139 1.0000 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1.0000 100 chrXII:6-269 1.0000 100 chrXII:5435-5953 1.0000 100 chrXII:10973-11964 1.0000 100 chrXII:48695-49133 1.0000 100 chrXII:91671-92922 1.0000 100 chrXII:97169-97797 1.0000 100 chrXII:167625-168630 1.0000 100 chrXII:214626-215182 1.0000 100 chrXII:241326-242016 1.0000 100 chrXII:262753-263942 1.0000 100 chrXII:282516-282847 1.0000 100 chrXII:348250-348665 1.0000 100 chrXII:365990-366615 1.0000 100 chrXII:374192-374699 1.0000 100 chrXII:426852-427771 1.0000 100 chrXII:448520-449055 1.0000 100 chrXII:468764-468968 1.0000 100 chrXII:489296-489543 1.0000 100 chrXII:498231-499060 1.0000 100 chrXII:522178-522421 1.0000 100 chrXII:588453-589360 1.0000 100 chrXII:590008-590271 1.0000 100 chrXII:592350-593173 1.0000 100 chrXII:605151-605679 1.0000 100 chrXII:628125-628901 1.0000 100 chrXII:656700-657192 1.0000 100 chrXII:673202-674566 1.0000 100 chrXII:687668-688371 1.0000 100 chrXII:712272-713621 1.0000 100 chrXII:731877-732249 1.0000 100 chrXII:734706-735311 1.0000 100 chrXII:780828-781906 1.0000 100 chrXII:784115-784553 1.0000 100 chrXII:793705-795223 1.0000 100 chrXII:796313-797417 1.0000 100 chrXII:805376-805691 1.0000 100 chrXII:817883-819809 1.0000 100 chrXII:855881-857575 1.0000 100 chrXII:875204-875644 1.0000 100 chrXII:897672-898059 1.0000 100 chrXII:898636-899578 1.0000 100 chrXII:921796-922596 1.0000 100 chrXII:932072-932539 1.0000 100 chrXII:962778-963448 1.0000 100 chrXII:975763-976287 1.0000 100 chrXII:1018936-1019480 1.0000 100 chrXII:1028167-1028570 1.0000 100 chrXII:1051856-1052967 1.0000 100 chrXII:1064040-1065382 1.0000 100 chrXII:1071560-1071751 1.0000 100 chrXIII:5307-5810 1.0000 100 chrXIII:91566-92069 1.0000 100 chrXIII:123796-124726 1.0000 100 chrXIII:131265-132343 1.0000 100 chrXIII:145821-146303 1.0000 100 chrXIII:168579-169350 1.0000 100 chrXIII:183722-184205 1.0000 100 chrXIII:195904-196414 1.0000 100 chrXIII:224081-224382 1.0000 100 chrXIII:225287-226324 1.0000 100 chrXIII:259033-259847 1.0000 100 chrXIII:267658-269849 1.0000 100 chrXIII:289523-291152 1.0000 100 chrXIII:296718-299412 1.0000 100 chrXIII:320952-321341 1.0000 100 chrXIII:352061-352433 1.0000 100 chrXIII:362830-363392 1.0000 100 chrXIII:372183-372748 1.0000 100 chrXIII:378623-380009 1.0000 100 chrXIII:420311-420965 1.0000 100 chrXIII:463209-464131 1.0000 100 chrXIII:480381-480946 1.0000 100 chrXIII:504612-505286 1.0000 100 chrXIII:550721-553410 1.0000 100 chrXIII:572691-573482 1.0000 100 chrXIII:586395-586972 1.0000 100 chrXIII:631740-633575 1.0000 100 chrXIII:650723-651677 1.0000 100 chrXIII:731477-733593 1.0000 100 chrXIII:747692-748265 1.0000 100 chrXIII:754423-754885 1.0000 100 chrXIII:761556-763121 1.0000 100 chrXIII:767255-768660 1.0000 100 chrXIII:807675-808590 1.0000 100 chrXIII:837106-838487 1.0000 100 chrXIII:861203-861414 1.0000 100 chrXIII:872672-872938 1.0000 100 chrXIII:923205-924357 1.0000 100 chrXIV:6517-7070 1.0000 100 chrXIV:63114-63584 1.0000 100 chrXIV:96056-96651 1.0000 100 chrXIV:102489-103602 1.0000 100 chrXIV:104576-105131 1.0000 100 chrXIV:173975-174583 1.0000 100 chrXIV:241386-241748 1.0000 100 chrXIV:283064-283667 1.0000 100 chrXIV:330348-331098 1.0000 100 chrXIV:374647-375097 1.0000 100 chrXIV:392328-392706 1.0000 100 chrXIV:442735-444048 1.0000 100 chrXIV:444447-444954 1.0000 100 chrXIV:495182-495645 1.0000 100 chrXIV:499285-499742 1.0000 100 chrXIV:499985-500719 1.0000 100 chrXIV:506949-507443 1.0000 100 chrXIV:546944-547413 1.0000 100 chrXIV:560449-561226 1.0000 100 chrXIV:567891-568603 1.0000 100 chrXIV:569658-570157 1.0000 100 chrXIV:575057-575763 1.0000 100 chrXIV:585524-586473 1.0000 100 chrXIV:602086-602530 1.0000 100 chrXIV:619455-620031 1.0000 100 chrXIV:631552-632189 1.0000 100 chrXIV:632382-632886 1.0000 100 chrXIV:716085-717017 1.0000 100 chrXIV:725671-726415 1.0000 100 chrXIV:783480-784304 1.0000 100 chrXV:7-976 1.0000 100 chrXV:79725-80138 1.0000 100 chrXV:92334-93434 1.0000 100 chrXV:93752-94897 1.0000 100 chrXV:110254-110643 1.0000 100 chrXV:110850-111307 1.0000 100 chrXV:113474-114179 1.0000 100 chrXV:161130-161395 1.0000 100 chrXV:167932-168512 1.0000 100 chrXV:216237-216702 1.0000 100 chrXV:226385-227180 1.0000 100 chrXV:227643-228582 1.0000 100 chrXV:253801-254099 1.0000 100 chrXV:274456-275012 1.0000 100 chrXV:281682-282614 1.0000 100 chrXV:287998-288367 1.0000 100 chrXV:300709-301454 1.0000 100 chrXV:340121-340750 1.0000 100 chrXV:353835-354799 1.0000 100 chrXV:438378-439522 1.0000 100 chrXV:464138-464962 1.0000 100 chrXV:487194-487704 1.0000 100 chrXV:505032-505498 1.0000 100 chrXV:571600-572298 1.0000 100 chrXV:594065-594709 1.0000 100 chrXV:620991-622346 1.0000 100 chrXV:622708-623057 1.0000 100 chrXV:663539-664285 1.0000 100 chrXV:678014-679206 1.0000 100 chrXV:709990-710493 1.0000 100 chrXV:759169-759497 1.0000 100 chrXV:779694-780754 1.0000 100 chrXV:842446-843108 1.0000 100 chrXV:853947-854456 1.0000 100 chrXV:866509-866969 1.0000 100 chrXV:900649-901234 1.0000 100 chrXV:901482-901707 1.0000 100 chrXV:925214-925402 1.0000 100 chrXV:968171-968423 1.0000 100 chrXV:976167-976748 1.0000 100 chrXV:978852-979097 1.0000 100 chrXV:979746-981290 1.0000 100 chrXV:1003925-1005000 1.0000 100 chrXV:1025695-1026256 1.0000 100 chrXV:1028627-1029500 1.0000 100 chrXVI:55780-56515 1.0000 100 chrXVI:76324-76727 1.0000 100 chrXVI:172900-174094 1.0000 100 chrXVI:188597-188963 1.0000 100 chrXVI:209685-210941 1.0000 100 chrXVI:280658-281865 1.0000 100 chrXVI:302531-302971 1.0000 100 chrXVI:338694-339286 1.0000 100 chrXVI:377935-378364 1.0000 100 chrXVI:378664-379019 1.0000 100 chrXVI:404583-405518 1.0000 100 chrXVI:406202-407888 1.0000 100 chrXVI:435111-436259 1.0000 100 chrXVI:520108-520546 1.0000 100 chrXVI:559997-560532 1.0000 100 chrXVI:571896-572526 1.0000 100 chrXVI:581815-582469 1.0000 100 chrXVI:622231-622894 1.0000 100 chrXVI:689218-690679 1.0000 100 chrXVI:699899-700681 1.0000 100 chrXVI:701892-702272 1.0000 100 chrXVI:718573-719326 1.0000 100 chrXVI:731640-732350 1.0000 100 chrXVI:743855-744707 1.0000 100 chrXVI:768932-769514 1.0000 100 chrXVI:775644-776825 1.0000 100 chrXVI:794445-794796 1.0000 100 chrXVI:810456-810878 1.0000 100 chrXVI:819007-819859 1.0000 100 chrXVI:856541-857081 1.0000 100 chrXVI:859950-860631 1.0000 100 chrXVI:866365-866773 1.0000 100 chrXVI:879461-879747 1.0000 100 chrXVI:880001-880817 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--NOT3/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--NOT3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--NOT3/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 527 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 52700 N= 527 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.310 C 0.190 G 0.190 T 0.310 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--NOT3/background): A 0.319 C 0.181 G 0.181 T 0.319 ******************************************************************************** ******************************************************************************** MOTIF CDMBSGGRRTCGAACCSVKGAYCT MEME-1 width = 24 sites = 69 llr = 1259 E-value = 1.1e-241 ******************************************************************************** -------------------------------------------------------------------------------- Motif CDMBSGGRRTCGAACCSVKGAYCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 234::2:54:::aa::14:28:1: pos.-specific C 5:444:::1:7:::a7532::672 probability G 142357a52::a::::33481:1: matrix T 12:3::::2a3::::21:3:2417 bits 2.5 * * 2.2 * * * 2.0 * * * 1.7 * * ** * Relative 1.5 * ****** * Entropy 1.2 * ******* * * (26.3 bits) 1.0 **** ******* * ** 0.7 ***** ******** * *** 0.5 * ****** *************** 0.2 ******** *************** 0.0 ------------------------ Multilevel CGCCGGGAATCGAACCCAGGACCT consensus AAAGCA GG T GCT T C sequence T T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDMBSGGRRTCGAACCSVKGAYCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------ chrXIV:631552-632189 + 32 4.21e-13 AATGGGGGCG AGCCGGGACTCGAACCCGGGACCT CCCGCACCCT chrIII:123407-123799 + 30 4.21e-13 ATGTGGGGCG AGCCGGGACTCGAACCCGGGACCT CCCGCACCCT chrXV:853947-854456 + 42 6.00e-12 AAATTGGACG CAACCGGAATCGAACCGATGACCT CTTCCTTGCA chrXII:214626-215182 + 35 6.00e-12 TAAATGGACG CAACCGGAATCGAACCGATGACCT CTTCCTTGCA chrV:311810-312323 + 13 6.00e-12 TCATTGGACG CAACCGGAATCGAACCGATGACCT CTTCCTTGCA chrI:166035-166652 - 17 6.00e-12 AATTTGGACG CAACCGGAATCGAACCGATGACCT CTTCCTTGCA chrXIV:569658-570157 + 16 2.16e-11 AGAATGGTCT CTAGCGGGATCGAACCGCTGATCC CCGCGTTATT chrV:442952-443518 + 23 2.16e-11 AATATGGTCT CTAGCGGGATCGAACCGCTGATCC CCGCGTTATT chrIX:183088-183846 + 29 2.16e-11 TAAGTGGTCT CTAGCGGGATCGAACCGCTGATCC CCGCGTTATT chrII:196696-198337 - 72 2.16e-11 GGTCT CTAGCGGGATCGAACCGCTGATCC CCGCGTTATT chrVII:930741-931263 + 7 4.49e-11 TGCGCA AGCCCGGAATCGAACCGGGGGCCC AACGATGGCA chrX:374187-374896 + 21 5.95e-11 AAAGCACTCA CGATGGGGGTCGAACCCATAATCT TCTGATTAGA chrX:355111-355730 - 46 5.95e-11 AAAGCACTCA CGATGGGGGTCGAACCCATAATCT TCTGATTAGA chrVII:828334-829152 + 36 5.95e-11 AAAGCACTCA CGATGGGGGTCGAACCCATAATCT TCTGATTAGA chrVII:736179-736648 - 19 5.95e-11 ACAACACTCA CGATGGGGGTCGAACCCATAATCT TCTGATTAGA chrVII:405266-405732 - 63 5.95e-11 AAAGCACTCA CGATGGGGGTCGAACCCATAATCT TCTGATTAGA chrXIII:586395-586972 + 9 1.51e-10 AATGATTT CGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXIII:420311-420965 + 6 1.51e-10 GATTT CGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXIII:372183-372748 + 36 1.51e-10 AAAATGATTT CGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrVIII:85039-85585 + 42 1.51e-10 AAATTGATTT CGCCCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXVI:581815-582469 - 13 1.72e-10 AGAAAGCCCT GTAGGGGGCTCGAACCCCTAACCT TATGATTAAG chrXIII:480381-480946 + 14 1.72e-10 AAGAAGCCCT GTAGGGGGCTCGAACCCCTAACCT TATGATTAAG chrXI:202820-203289 - 38 1.72e-10 AGAAAGCCCT GTAGGGGGCTCGAACCCCTAACCT TATGATTAAG chrV:135155-135718 + 45 1.72e-10 AGAAAGCCCT GTAGGGGGCTCGAACCCCTAACCT TATGATTAAG chrXV:464138-464962 - 22 2.51e-10 AAAAGGGGCG AGCTGGGAATTGAACCCAGGGCCT CTCGCATGCT chrXIV:546944-547413 - 39 2.51e-10 TAACGGGGCG AGCTGGGAATTGAACCCAGGGCCT CTCGCATGCT chrVIII:388666-389228 + 2 2.51e-10 G AGCTGGGAATTGAACCCAGGGCCT CTCGCATGCT chrXV:594065-594709 + 23 6.47e-10 CAGATGCGCA AGCCGGGAATCGAACCCGGGCCTC ATGCTTGGGA chrXVI:768932-769514 + 40 7.24e-10 AGAACTCCTC ATAGGGGGCTCGAACCCCTGACAT TTCGGTATCC chrXII:875204-875644 - 68 7.24e-10 GAACTCCTC ATAGGGGGCTCGAACCCCTGACAT TTCGGTATCC chrXI:578758-579330 - 37 7.24e-10 AGAACTCCTC ATAGGGGGCTCGAACCCCTGACAT TTCGGTATCC chrXV:113474-114179 - 69 1.01e-09 AATGCTTC CAATCGGATTTGAACCGATGATCT CCACATTACT chrXIV:104576-105131 - 45 1.01e-09 AATATGCTTC CAATCGGATTTGAACCGATGATCT CCACATTACT chrX:58711-59525 + 38 1.01e-09 TATATGCTTC CAATCGGATTTGAACCGATGATCT CCACATTACT chrIX:325385-326276 - 11 1.01e-09 AAATTGCTTC CAATCGGATTTGAACCGATGATCT CCACATTACT chrVII:541600-542221 - 32 1.13e-09 AACACTCCGA TACGGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrV:354669-355324 - 30 1.13e-09 AGTACTCCGA TACGGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrIII:82119-82777 + 70 1.13e-09 AAAACTCCGA TACGGGGAGTCGAACCCCGGTCTC CACGGTG chrXIII:320952-321341 + 57 1.55e-09 AAAATGGACG AGTCCGGAATCGAACCGGAGACCT CTCCCATGCT chrXII:656700-657192 + 44 1.55e-09 TACTTGGACG AGTCCGGAATCGAACCGGAGACCT CTCCCATGCT chrIV:410141-410673 - 65 1.55e-09 AATTTGGACG AGTCCGGAATCGAACCGGAGACCT CTCCCATGCT chrV:130833-131415 + 14 4.69e-09 AAATAGGTCT TACCCGGATTCGAACCGGGGTTGT TCGGATCAAA chrIV:802539-803031 + 2 4.69e-09 C TACCCGGATTCGAACCGGGGTTGT CCGGATCAAA chrIII:168072-168628 + 7 4.69e-09 AGGTCC TACCCGGATTCGAACCGGGGTTGT CCGGATCAAA chrXIV:632382-632886 - 59 6.22e-09 AAAACGACCC CAGTGAGGGTTGAACTCACGATCT TGCGATTAAC chrXII:975763-976287 + 14 6.22e-09 TAAACGACCC CAGTGAGGGTTGAACTCACGATCT TGCGATTAAC chrXI:74315-74982 - 70 6.22e-09 GCGACCC CAGTGAGGGTTGAACTCACGATCT TGCGATTAAC chrVII:730913-731427 - 61 6.22e-09 AAAACGACCC CAGTGAGGGTTGAACTCACGATCT TGCGATTAAC chrVI:137107-137946 + 16 6.22e-09 AAAACGACCC CAGTGAGGGTTGAACTCACGATCT TGCGATTAAC chrIV:1095007-1095749 + 48 6.22e-09 AAAATGCGAA CTCTGTGGATCGAACACAGGACCT CCAGATATCT chrVI:210434-210913 + 2 8.20e-09 C GGGGGCGAGTCGAACGCCCGATCT CAAGATTTCG chrVI:167218-167723 - 76 8.20e-09 C GGGGGCGAGTCGAACGCCCGATCT CAAGATTTCG chrIV:946138-946595 - 55 8.20e-09 AAAATCTCCC GGGGGCGAGTCGAACGCCCGATCT CAAGATTTCG chrXV:976167-976748 - 57 1.17e-08 ATATTGCTCC AGGGGAGGTTCGAACTCTCGACCT TCAGATTATG chrIV:1175571-1176233 - 20 1.17e-08 AAAATGCTCC AGGGGAGGTTCGAACTCTCGACCT TCAGATTATG chrVIII:466659-467382 - 62 2.31e-08 ATAATGCCAC CTGCCAGAATTGAACTAGCGACCT TTGCATTACA chrIV:619637-620328 + 43 2.72e-08 AAATCTTCCC CGCCAGGACTTGAACCTGGAATCT TCTGGTTCGT chrXVI:622231-622894 + 34 3.74e-08 TAAATGCGAA TTCTGTGGATCGAACACAGGACCT CCAGATAACT chrVII:706916-707338 + 37 4.72e-08 AAAAAGCTCG CACTCAGGATCGAACTAAGGACCA ACAGATTTGC chrX:541295-541833 - 36 5.92e-08 AAATCTCCGC GACGGGGAATTGAACCCCGATCTG GCACGCGACA chrIX:324013-324617 + 44 5.92e-08 AAATCTCCGC GACGGGGAATTGAACCCCGATCTG GCACGCGACA chrII:347389-348018 + 6 6.37e-08 TTGTC CGCGCGAGTTCGAACCTCGCATCC TTCAGTAATA chrII:9355-10003 + 10 6.37e-08 ACGGTTGTC CGCGCGAGTTCGAACCTCGCATCC TTCAGTATTT chrVII:700192-701348 - 7 7.93e-08 ATATTGATAC CCGCGGGGTTTGAACCCGCGCCTC CGAAGA chrXIII:378623-380009 + 43 1.21e-07 AAATTGAAAC GGACAGGAATTGAACCTGCAACCC TTCGATTGCA chrXV:709990-710493 - 52 1.49e-07 AAATTAGCGC CGCTCGGTTTCGATCCGAGGACAT CAGGGTTATG chrXIII:362830-363392 - 45 1.59e-07 AAAATGCCAT CTCCTAGAATCGAACCAGGGTTTC ATCGGCCACA chrXI:313112-313708 + 47 1.59e-07 AAAATGCCAT CTCCTAGAATCGAACCAGGGTTTC ATCGGCCACA chrVII:110404-110943 + 8 1.59e-07 TTGCCAT CTCCTAGAATCGAACCAGGGTTTC ATCGGCCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDMBSGGRRTCGAACCSVKGAYCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631552-632189 4.2e-13 31_[+1]_45 chrIII:123407-123799 4.2e-13 29_[+1]_47 chrXV:853947-854456 6e-12 41_[+1]_35 chrXII:214626-215182 6e-12 34_[+1]_42 chrV:311810-312323 6e-12 12_[+1]_64 chrI:166035-166652 6e-12 16_[-1]_60 chrXIV:569658-570157 2.2e-11 15_[+1]_61 chrV:442952-443518 2.2e-11 22_[+1]_54 chrIX:183088-183846 2.2e-11 28_[+1]_48 chrII:196696-198337 2.2e-11 71_[-1]_5 chrVII:930741-931263 4.5e-11 6_[+1]_70 chrX:374187-374896 6e-11 20_[+1]_56 chrX:355111-355730 6e-11 45_[-1]_31 chrVII:828334-829152 6e-11 35_[+1]_41 chrVII:736179-736648 6e-11 18_[-1]_58 chrVII:405266-405732 6e-11 62_[-1]_14 chrXIII:586395-586972 1.5e-10 8_[+1]_68 chrXIII:420311-420965 1.5e-10 5_[+1]_71 chrXIII:372183-372748 1.5e-10 35_[+1]_41 chrVIII:85039-85585 1.5e-10 41_[+1]_35 chrXVI:581815-582469 1.7e-10 12_[-1]_64 chrXIII:480381-480946 1.7e-10 13_[+1]_63 chrXI:202820-203289 1.7e-10 37_[-1]_39 chrV:135155-135718 1.7e-10 44_[+1]_32 chrXV:464138-464962 2.5e-10 21_[-1]_55 chrXIV:546944-547413 2.5e-10 38_[-1]_38 chrVIII:388666-389228 2.5e-10 1_[+1]_75 chrXV:594065-594709 6.5e-10 22_[+1]_54 chrXVI:768932-769514 7.2e-10 39_[+1]_37 chrXII:875204-875644 7.2e-10 67_[-1]_9 chrXI:578758-579330 7.2e-10 36_[-1]_40 chrXV:113474-114179 1e-09 68_[-1]_8 chrXIV:104576-105131 1e-09 44_[-1]_32 chrX:58711-59525 1e-09 37_[+1]_39 chrIX:325385-326276 1e-09 10_[-1]_66 chrVII:541600-542221 1.1e-09 31_[-1]_45 chrV:354669-355324 1.1e-09 29_[-1]_47 chrIII:82119-82777 1.1e-09 69_[+1]_7 chrXIII:320952-321341 1.6e-09 56_[+1]_20 chrXII:656700-657192 1.6e-09 43_[+1]_33 chrIV:410141-410673 1.6e-09 64_[-1]_12 chrV:130833-131415 4.7e-09 13_[+1]_63 chrIV:802539-803031 4.7e-09 1_[+1]_75 chrIII:168072-168628 4.7e-09 6_[+1]_70 chrXIV:632382-632886 6.2e-09 58_[-1]_18 chrXII:975763-976287 6.2e-09 13_[+1]_63 chrXI:74315-74982 6.2e-09 69_[-1]_7 chrVII:730913-731427 6.2e-09 60_[-1]_16 chrVI:137107-137946 6.2e-09 15_[+1]_61 chrIV:1095007-1095749 6.2e-09 47_[+1]_29 chrVI:210434-210913 8.2e-09 1_[+1]_75 chrVI:167218-167723 8.2e-09 75_[-1]_1 chrIV:946138-946595 8.2e-09 54_[-1]_22 chrXV:976167-976748 1.2e-08 56_[-1]_20 chrIV:1175571-1176233 1.2e-08 19_[-1]_57 chrVIII:466659-467382 2.3e-08 61_[-1]_15 chrIV:619637-620328 2.7e-08 42_[+1]_34 chrXVI:622231-622894 3.7e-08 33_[+1]_43 chrVII:706916-707338 4.7e-08 36_[+1]_40 chrX:541295-541833 5.9e-08 35_[-1]_41 chrIX:324013-324617 5.9e-08 43_[+1]_33 chrII:347389-348018 6.4e-08 5_[+1]_71 chrII:9355-10003 6.4e-08 9_[+1]_67 chrVII:700192-701348 7.9e-08 6_[-1]_70 chrXIII:378623-380009 1.2e-07 42_[+1]_34 chrXV:709990-710493 1.5e-07 51_[-1]_25 chrXIII:362830-363392 1.6e-07 44_[-1]_32 chrXI:313112-313708 1.6e-07 46_[+1]_30 chrVII:110404-110943 1.6e-07 7_[+1]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDMBSGGRRTCGAACCSVKGAYCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CDMBSGGRRTCGAACCSVKGAYCT width=24 seqs=69 chrXIV:631552-632189 ( 32) AGCCGGGACTCGAACCCGGGACCT 1 chrIII:123407-123799 ( 30) AGCCGGGACTCGAACCCGGGACCT 1 chrXV:853947-854456 ( 42) CAACCGGAATCGAACCGATGACCT 1 chrXII:214626-215182 ( 35) CAACCGGAATCGAACCGATGACCT 1 chrV:311810-312323 ( 13) CAACCGGAATCGAACCGATGACCT 1 chrI:166035-166652 ( 17) CAACCGGAATCGAACCGATGACCT 1 chrXIV:569658-570157 ( 16) CTAGCGGGATCGAACCGCTGATCC 1 chrV:442952-443518 ( 23) CTAGCGGGATCGAACCGCTGATCC 1 chrIX:183088-183846 ( 29) CTAGCGGGATCGAACCGCTGATCC 1 chrII:196696-198337 ( 72) CTAGCGGGATCGAACCGCTGATCC 1 chrVII:930741-931263 ( 7) AGCCCGGAATCGAACCGGGGGCCC 1 chrX:374187-374896 ( 21) CGATGGGGGTCGAACCCATAATCT 1 chrX:355111-355730 ( 46) CGATGGGGGTCGAACCCATAATCT 1 chrVII:828334-829152 ( 36) CGATGGGGGTCGAACCCATAATCT 1 chrVII:736179-736648 ( 19) CGATGGGGGTCGAACCCATAATCT 1 chrVII:405266-405732 ( 63) CGATGGGGGTCGAACCCATAATCT 1 chrXIII:586395-586972 ( 9) CGCCCAGGATCGAACTGGGGACGT 1 chrXIII:420311-420965 ( 6) CGCCCAGGATCGAACTGGGGACGT 1 chrXIII:372183-372748 ( 36) CGCCCAGGATCGAACTGGGGACGT 1 chrVIII:85039-85585 ( 42) CGCCCAGGATCGAACTGGGGACGT 1 chrXVI:581815-582469 ( 13) GTAGGGGGCTCGAACCCCTAACCT 1 chrXIII:480381-480946 ( 14) GTAGGGGGCTCGAACCCCTAACCT 1 chrXI:202820-203289 ( 38) GTAGGGGGCTCGAACCCCTAACCT 1 chrV:135155-135718 ( 45) GTAGGGGGCTCGAACCCCTAACCT 1 chrXV:464138-464962 ( 22) AGCTGGGAATTGAACCCAGGGCCT 1 chrXIV:546944-547413 ( 39) AGCTGGGAATTGAACCCAGGGCCT 1 chrVIII:388666-389228 ( 2) AGCTGGGAATTGAACCCAGGGCCT 1 chrXV:594065-594709 ( 23) AGCCGGGAATCGAACCCGGGCCTC 1 chrXVI:768932-769514 ( 40) ATAGGGGGCTCGAACCCCTGACAT 1 chrXII:875204-875644 ( 68) ATAGGGGGCTCGAACCCCTGACAT 1 chrXI:578758-579330 ( 37) ATAGGGGGCTCGAACCCCTGACAT 1 chrXV:113474-114179 ( 69) CAATCGGATTTGAACCGATGATCT 1 chrXIV:104576-105131 ( 45) CAATCGGATTTGAACCGATGATCT 1 chrX:58711-59525 ( 38) CAATCGGATTTGAACCGATGATCT 1 chrIX:325385-326276 ( 11) CAATCGGATTTGAACCGATGATCT 1 chrVII:541600-542221 ( 32) TACGGGGAGTCGAACCCCGGTCTC 1 chrV:354669-355324 ( 30) TACGGGGAGTCGAACCCCGGTCTC 1 chrIII:82119-82777 ( 70) TACGGGGAGTCGAACCCCGGTCTC 1 chrXIII:320952-321341 ( 57) AGTCCGGAATCGAACCGGAGACCT 1 chrXII:656700-657192 ( 44) AGTCCGGAATCGAACCGGAGACCT 1 chrIV:410141-410673 ( 65) AGTCCGGAATCGAACCGGAGACCT 1 chrV:130833-131415 ( 14) TACCCGGATTCGAACCGGGGTTGT 1 chrIV:802539-803031 ( 2) TACCCGGATTCGAACCGGGGTTGT 1 chrIII:168072-168628 ( 7) TACCCGGATTCGAACCGGGGTTGT 1 chrXIV:632382-632886 ( 59) CAGTGAGGGTTGAACTCACGATCT 1 chrXII:975763-976287 ( 14) CAGTGAGGGTTGAACTCACGATCT 1 chrXI:74315-74982 ( 70) CAGTGAGGGTTGAACTCACGATCT 1 chrVII:730913-731427 ( 61) CAGTGAGGGTTGAACTCACGATCT 1 chrVI:137107-137946 ( 16) CAGTGAGGGTTGAACTCACGATCT 1 chrIV:1095007-1095749 ( 48) CTCTGTGGATCGAACACAGGACCT 1 chrVI:210434-210913 ( 2) GGGGGCGAGTCGAACGCCCGATCT 1 chrVI:167218-167723 ( 76) GGGGGCGAGTCGAACGCCCGATCT 1 chrIV:946138-946595 ( 55) GGGGGCGAGTCGAACGCCCGATCT 1 chrXV:976167-976748 ( 57) AGGGGAGGTTCGAACTCTCGACCT 1 chrIV:1175571-1176233 ( 20) AGGGGAGGTTCGAACTCTCGACCT 1 chrVIII:466659-467382 ( 62) CTGCCAGAATTGAACTAGCGACCT 1 chrIV:619637-620328 ( 43) CGCCAGGACTTGAACCTGGAATCT 1 chrXVI:622231-622894 ( 34) TTCTGTGGATCGAACACAGGACCT 1 chrVII:706916-707338 ( 37) CACTCAGGATCGAACTAAGGACCA 1 chrX:541295-541833 ( 36) GACGGGGAATTGAACCCCGATCTG 1 chrIX:324013-324617 ( 44) GACGGGGAATTGAACCCCGATCTG 1 chrII:347389-348018 ( 6) CGCGCGAGTTCGAACCTCGCATCC 1 chrII:9355-10003 ( 10) CGCGCGAGTTCGAACCTCGCATCC 1 chrVII:700192-701348 ( 7) CCGCGGGGTTTGAACCCGCGCCTC 1 chrXIII:378623-380009 ( 43) GGACAGGAATTGAACCTGCAACCC 1 chrXV:709990-710493 ( 52) CGCTCGGTTTCGATCCGAGGACAT 1 chrXIII:362830-363392 ( 45) CTCCTAGAATCGAACCAGGGTTTC 1 chrXI:313112-313708 ( 47) CTCCTAGAATCGAACCAGGGTTTC 1 chrVII:110404-110943 ( 8) CTCCTAGAATCGAACCAGGGTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDMBSGGRRTCGAACCSVKGAYCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 40579 bayes= 11.2204 E= 1.1e-241 -55 157 -32 -165 0 -364 122 -37 18 122 -5 -288 -1275 100 88 -7 -346 117 153 -288 -46 -205 195 -346 -346 -1275 243 -1275 67 -1275 140 -446 44 -32 36 -76 -1275 -1275 -1275 165 -1275 203 -1275 -29 -1275 -1275 247 -1275 165 -1275 -1275 -1275 163 -1275 -1275 -446 -1275 247 -1275 -1275 -346 203 -205 -76 -214 153 95 -246 18 75 75 -346 -288 6 122 12 -76 -264 212 -1275 124 -264 -164 -100 -1275 165 -1275 44 -246 195 -83 -114 -446 36 -264 118 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDMBSGGRRTCGAACCSVKGAYCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 69 E= 1.1e-241 0.217391 0.536232 0.144928 0.101449 0.318841 0.014493 0.420290 0.246377 0.362319 0.420290 0.173913 0.043478 0.000000 0.362319 0.333333 0.304348 0.028986 0.405797 0.521739 0.043478 0.231884 0.043478 0.695652 0.028986 0.028986 0.000000 0.971014 0.000000 0.507246 0.000000 0.478261 0.014493 0.434783 0.144928 0.231884 0.188406 0.000000 0.000000 0.000000 1.000000 0.000000 0.739130 0.000000 0.260870 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.985507 0.000000 0.000000 0.014493 0.000000 1.000000 0.000000 0.000000 0.028986 0.739130 0.043478 0.188406 0.072464 0.521739 0.347826 0.057971 0.362319 0.304348 0.304348 0.028986 0.043478 0.188406 0.420290 0.347826 0.188406 0.028986 0.782609 0.000000 0.753623 0.028986 0.057971 0.159420 0.000000 0.565217 0.000000 0.434783 0.057971 0.695652 0.101449 0.144928 0.014493 0.231884 0.028986 0.724638 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDMBSGGRRTCGAACCSVKGAYCT MEME-1 regular expression -------------------------------------------------------------------------------- [CA][GAT][CA][CGT][GC][GA]G[AG][AG]T[CT]GAACC[CG][ACG][GT]GA[CT]C[TC] -------------------------------------------------------------------------------- Time 269.53 secs. ******************************************************************************** ******************************************************************************** MOTIF GSBYNYDTGGYYYAGTKGKTW MEME-2 width = 21 sites = 94 llr = 1394 E-value = 1.2e-231 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSBYNYDTGGYYYAGTKGKTW MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:1222:3:::2a1::::26 pos.-specific C 144434::::653:::2:1:: probability G 943:214:7a:21:9:5a5:1 matrix T :144334a::434::93:474 bits 2.5 * 2.2 * * 2.0 * * * 1.7 * * * ** * Relative 1.5 * *** ** * Entropy 1.2 * **** *** * (21.4 bits) 1.0 * **** *** ** 0.7 ** **** ****** 0.5 **** ****** ******** 0.2 **** **************** 0.0 --------------------- Multilevel GCCCCCGTGGCCTAGTGGGTA consensus GTTTTT A TTC T TAT sequence G G A G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYDTGGYYYAGTKGKTW MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:602086-602530 + 54 3.02e-10 AGATAACAAT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrXIV:569658-570157 - 63 3.02e-10 AGATAACAGT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrV:442952-443518 - 70 3.02e-10 ATTAAAATTT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrIX:183088-183846 - 76 3.02e-10 TCCT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrII:196696-198337 + 28 3.02e-10 CAGTAATCAA GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrX:197132-197630 - 34 3.69e-10 AATAATATTA GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrVII:774039-774603 + 78 3.69e-10 TCAATTAATT GGGCGTGTGGCGTAGTCGGTA GC chrIV:410141-410673 + 22 3.69e-10 TACAAATATT GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrV:311810-312323 - 59 1.33e-09 CAGAAATTCT GGGCACATGGCGCAGTTGGTA GCGCGCTTCC chrXV:663539-664285 - 3 2.19e-09 AACAAATAGT GGTTTCGTGGTCTAGTCGGTT AT chrXIII:586395-586972 - 56 2.19e-09 AACTTACTAT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrXIII:420311-420965 - 53 2.19e-09 ACAAATAACA GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrXI:379457-379929 + 37 2.19e-09 CAGATTAATA GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrXI:307976-308436 - 41 2.19e-09 ACAATTAAGT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrVII:823241-823679 + 72 2.19e-09 CAATAAGAGT GGTTTCGTGGTCTAGTCGGTT ATGGCATC chrVII:412123-412612 - 30 2.19e-09 TCAAAAAACT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrVII:73640-74175 - 25 2.19e-09 TCAATTAAGT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrXV:300709-301454 + 66 4.07e-09 AGAAAAGATC GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrXIII:195904-196414 - 41 4.07e-09 AAGTTCACAA GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrVIII:388666-389228 - 78 4.07e-09 AT GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrXI:46566-47053 - 27 5.46e-09 AAATTACTCA GCCCTTTTGGCCAAGTGGTAA GGCATCGCAC chrXII:605151-605679 - 47 6.30e-09 TTTCGAAAAT GCTCGTGTAGCTCAGTGGTTA GAGCTTCGTG chrX:523764-524455 - 14 6.30e-09 AGAGATTAAA GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrV:86425-86834 + 25 6.30e-09 AATGAGTTAT GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrIV:980741-981274 - 78 6.30e-09 GA GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrIV:884155-884622 + 23 6.30e-09 TTTCGAAAAT GCTCGTGTAGCTCAGTGGTTA GAGCTTCGTG chrII:226836-227381 + 17 6.30e-09 TGTAAAACGA GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrXV:113474-114179 + 26 9.55e-09 CAGAGATTTA GCTTCTATGGCCAAGTTGGTA AGGCGCCACA chrXIV:104576-105131 + 2 9.55e-09 A GCTTCTATGGCCAAGTTGGTA AGGCGCCACA chrIX:174797-175254 + 56 9.55e-09 ACAAGTACGA GCTTCTATGGCCAAGTTGGTA AGGCGCCACA chrIII:294967-295949 + 76 9.55e-09 ATACAATTAA GCTTCTATGGCCAAGTTGGTA AGGC chrXII:784115-784553 + 70 1.09e-08 TTGTTCAACC GTCCCAGTGGCCGAGTGGTTA AGGCGATGCC chrXV:594065-594709 - 68 1.24e-08 TGATTGAAAC GCGCAAGTGGTTCAGTGGTTA GAATTTATGC chrIII:227691-228191 + 51 1.24e-08 AAATCGAAAT GGCACTATGGCCGAGTGGTTA AGGCGAGAGA chrXVI:810456-810878 + 59 2.07e-08 CATTATTTGC GACTCCATGGCCAAGTTGGTT AAGGCGTGCG chrXV:487194-487704 + 40 2.07e-08 AACAAAGTTA GACTCCATGGCCAAGTTGGTT AAGGCGTGCG chrXIV:632382-632886 + 15 2.07e-08 AATTTAAAGT GACTCCATGGCCAAGTTGGTT AAGGCGTGCG chrXII:975763-976287 - 61 2.07e-08 GGAAATAAAA GACTCCATGGCCAAGTTGGTT AAGGCGTGCG chrXII:731877-732249 + 77 2.07e-08 AACATACAAT GGGAGTTTGGCCGAGTGGTTT AAG chrXI:74315-74982 + 26 2.07e-08 ATAGCAATTA GACTCCATGGCCAAGTTGGTT AAGGCGTGCG chrX:617762-618155 + 11 2.07e-08 AACAAACAAT GGGAGTTTGGCCGAGTGGTTT AAGGCGTCAG chrVII:730913-731427 + 17 2.07e-08 TAGTCAAAAA GACTCCATGGCCAAGTTGGTT AAGGCGTGCG chrVI:137107-137946 - 63 2.07e-08 AAAAGTGACT GACTCCATGGCCAAGTTGGTT AAGGCGTGCG chrIII:127514-127874 + 72 2.07e-08 AAGATAAAAT GACTCCATGGCCAAGTTGGTT AAGGCGTG chrXV:281682-282614 + 66 4.68e-08 ACATGAAAGC GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrXIII:183722-184205 - 35 4.68e-08 AATAAAGATC GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrX:531489-532153 + 57 4.68e-08 CAATTAGTGA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrX:396523-397107 - 11 4.68e-08 TCAAAAGTAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrVII:930741-931263 - 51 4.68e-08 TAATCAGTAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrVI:161978-162459 + 60 4.68e-08 AAGAAAACAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrIV:83262-83830 + 52 4.68e-08 AGTTCACTTA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrIV:802539-803031 - 47 5.23e-08 ATGAATTGTC GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrIV:644941-645512 - 28 5.23e-08 CAGTTGTTAC GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrIII:168072-168628 - 52 5.23e-08 AAGAAGTCCT GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrXIII:480381-480946 - 60 7.22e-08 ACAATAAGTA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrVII:876020-876742 + 63 7.22e-08 TAATAGAATA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrVII:121976-122534 + 64 7.22e-08 CAACGAATTA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrVI:226560-226970 - 25 7.22e-08 AGATTAAAAT GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrIV:1352295-1352753 - 44 7.22e-08 CAACGAAATA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrXVI:743855-744707 + 53 8.02e-08 CAGTGTAAAA GCCTCCTTAGCTTAGTGGTAG AGCGTTGCAC chrVIII:466659-467382 + 20 8.02e-08 TGTATTTTTA GCCTCCTTAGCTTAGTGGTAG AGCGTTGCAC chrVII:1004005-1004411 + 58 8.02e-08 TCAAGGGTTT GCCTCCTTAGCTTAGTGGTAG AGCGTTGCAC chrXIII:747692-748265 - 15 8.89e-08 CATATGACTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrX:374187-374896 - 66 8.89e-08 ACAAATAGTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrX:355111-355730 + 4 8.89e-08 GTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrVII:405266-405732 + 21 8.89e-08 ACAAACAGTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrIV:1256865-1257313 - 20 8.89e-08 GATCTTCTTA GCGAAAGTGGTTCAGTGGTTA GAATTCATGC chrXIV:631552-632189 - 77 1.61e-07 ACC GGGCGTGTGGTCTAGAGGTAT GATTCTCGCT chrV:130833-131415 - 59 1.61e-07 ATAATTAAGA GGTTTTATAGTGTAGTGGTTA TCACTTTCGG chrIII:123407-123799 - 75 1.61e-07 AAGGA GGGCGTGTGGTCTAGAGGTAT GATTCTCGCT chrII:326550-327198 - 21 2.13e-07 TCGAGTTCCG GGTCCAATGGTCCAGTGGTTC AAGACGTCGC chrXII:489296-489543 + 50 2.80e-07 GTAAGAGCCT GACCGAGTAGTGTAGTGGGTG ACCATACGCG chrXII:468764-468968 + 67 2.80e-07 GTAAGAGCCT GACCGAGTAGTGTAGTGGGTG ACCATACGCG chrXV:976167-976748 + 14 6.50e-07 TATTTTGTGC GCTTCAGTAGCTCAGTAGGAA GAGCGTCAGT chrXIII:362830-363392 + 3 6.50e-07 TT GCCATCTTAGTATAGTGGTTA GTACACATCG chrX:390853-391355 - 41 6.50e-07 AAGAAATAGT GCTTCAGTAGCTCAGTAGGAA GAGCGTCAGT chrVIII:62490-63044 + 38 6.50e-07 AAAATCATAT GCCATCTTAGTATAGTGGTTA GTACACATCG chrVII:110404-110943 - 53 6.50e-07 ATAATTACCT GCCATCTTAGTATAGTGGTTA GTACACATCG chrV:117813-118346 - 57 6.50e-07 TTACGTTTGA GGCCTCGTGGCGCACATGGTA CGCTGTGGTG chrX:538321-538815 + 37 7.61e-07 AACCAAGTTG GTTCCGTTGGCGTAATGGTAA CGCGTCTCCC chrVII:857257-857654 - 66 7.61e-07 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCT AAGGCGCCTG chrI:180890-181481 + 6 7.61e-07 TAAGT GGTTGTTTGGCCGAGCGGTCT AAGGCGCCTG chrXII:875204-875644 + 2 1.03e-06 A TCCTTGTTAGCTCAGTTGGTA GAGCGTTCGG chrVII:115220-115760 + 48 1.03e-06 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTA GAGCGTTCGG chrIV:359254-359863 + 69 1.03e-06 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTA GAGCGTTCGG chrXIV:374647-375097 + 47 1.11e-06 AGAAAAATAA GCGGACTTAGCTCAGTTGGGA GAGCGCCAGA chrXV:287998-288367 + 60 1.29e-06 AAAATAGCTT CTCTCGGTAGCCAAGTTGGTT TAAGGCGCAA chrVI:210434-210913 - 64 1.29e-06 ACAAAAACGA CTCTCGGTAGCCAAGTTGGTT TAAGGCGCAA chrVI:167218-167723 + 17 1.29e-06 ACAAAAACGA CTCTCGGTAGCCAAGTTGGTT TAAGGCGCAA chrXVI:559997-560532 - 55 2.09e-06 TAGAAATTGA GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrVIII:237744-238165 - 15 2.09e-06 CAAATAGTAA GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrXIII:923205-924357 - 46 5.01e-06 TCATTATGCA CGGCACTTGCCTCAGTGGTCT ATACCCTGTT chrXI:1-1048 + 75 5.01e-06 TCATTATTCA CGGCACTTGCCTCAGCGGTTT ATACC chrIV:1075299-1075804 - 23 7.81e-06 CCGTAATATT GTTCCAATAGTGTAGCGGCTA TCACGTTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYDTGGYYYAGTKGKTW MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:602086-602530 3e-10 53_[+2]_26 chrXIV:569658-570157 3e-10 62_[-2]_17 chrV:442952-443518 3e-10 69_[-2]_10 chrIX:183088-183846 3e-10 75_[-2]_4 chrII:196696-198337 3e-10 27_[+2]_52 chrX:197132-197630 3.7e-10 33_[-2]_46 chrVII:774039-774603 3.7e-10 77_[+2]_2 chrIV:410141-410673 3.7e-10 21_[+2]_58 chrV:311810-312323 1.3e-09 58_[-2]_21 chrXV:663539-664285 2.2e-09 2_[-2]_77 chrXIII:586395-586972 2.2e-09 55_[-2]_24 chrXIII:420311-420965 2.2e-09 52_[-2]_27 chrXI:379457-379929 2.2e-09 36_[+2]_43 chrXI:307976-308436 2.2e-09 40_[-2]_39 chrVII:823241-823679 2.2e-09 71_[+2]_8 chrVII:412123-412612 2.2e-09 29_[-2]_50 chrVII:73640-74175 2.2e-09 24_[-2]_55 chrXV:300709-301454 4.1e-09 65_[+2]_14 chrXIII:195904-196414 4.1e-09 40_[-2]_39 chrVIII:388666-389228 4.1e-09 77_[-2]_2 chrXI:46566-47053 5.5e-09 26_[-2]_53 chrXII:605151-605679 6.3e-09 46_[-2]_33 chrX:523764-524455 6.3e-09 13_[-2]_66 chrV:86425-86834 6.3e-09 24_[+2]_55 chrIV:980741-981274 6.3e-09 77_[-2]_2 chrIV:884155-884622 6.3e-09 22_[+2]_57 chrII:226836-227381 6.3e-09 16_[+2]_63 chrXV:113474-114179 9.6e-09 25_[+2]_54 chrXIV:104576-105131 9.6e-09 1_[+2]_78 chrIX:174797-175254 9.6e-09 55_[+2]_24 chrIII:294967-295949 9.6e-09 75_[+2]_4 chrXII:784115-784553 1.1e-08 69_[+2]_10 chrXV:594065-594709 1.2e-08 67_[-2]_12 chrIII:227691-228191 1.2e-08 50_[+2]_29 chrXVI:810456-810878 2.1e-08 58_[+2]_21 chrXV:487194-487704 2.1e-08 39_[+2]_40 chrXIV:632382-632886 2.1e-08 14_[+2]_65 chrXII:975763-976287 2.1e-08 60_[-2]_19 chrXII:731877-732249 2.1e-08 76_[+2]_3 chrXI:74315-74982 2.1e-08 25_[+2]_54 chrX:617762-618155 2.1e-08 10_[+2]_69 chrVII:730913-731427 2.1e-08 16_[+2]_63 chrVI:137107-137946 2.1e-08 62_[-2]_17 chrIII:127514-127874 2.1e-08 71_[+2]_8 chrXV:281682-282614 4.7e-08 65_[+2]_14 chrXIII:183722-184205 4.7e-08 34_[-2]_45 chrX:531489-532153 4.7e-08 56_[+2]_23 chrX:396523-397107 4.7e-08 10_[-2]_69 chrVII:930741-931263 4.7e-08 50_[-2]_29 chrVI:161978-162459 4.7e-08 59_[+2]_20 chrIV:83262-83830 4.7e-08 51_[+2]_28 chrIV:802539-803031 5.2e-08 46_[-2]_33 chrIV:644941-645512 5.2e-08 27_[-2]_52 chrIII:168072-168628 5.2e-08 51_[-2]_28 chrXIII:480381-480946 7.2e-08 59_[-2]_20 chrVII:876020-876742 7.2e-08 62_[+2]_17 chrVII:121976-122534 7.2e-08 63_[+2]_16 chrVI:226560-226970 7.2e-08 24_[-2]_55 chrIV:1352295-1352753 7.2e-08 43_[-2]_36 chrXVI:743855-744707 8e-08 52_[+2]_27 chrVIII:466659-467382 8e-08 19_[+2]_60 chrVII:1004005-1004411 8e-08 57_[+2]_22 chrXIII:747692-748265 8.9e-08 14_[-2]_65 chrX:374187-374896 8.9e-08 65_[-2]_14 chrX:355111-355730 8.9e-08 3_[+2]_76 chrVII:405266-405732 8.9e-08 20_[+2]_59 chrIV:1256865-1257313 8.9e-08 19_[-2]_60 chrXIV:631552-632189 1.6e-07 76_[-2]_3 chrV:130833-131415 1.6e-07 58_[-2]_21 chrIII:123407-123799 1.6e-07 74_[-2]_5 chrII:326550-327198 2.1e-07 20_[-2]_59 chrXII:489296-489543 2.8e-07 49_[+2]_30 chrXII:468764-468968 2.8e-07 66_[+2]_13 chrXV:976167-976748 6.5e-07 13_[+2]_66 chrXIII:362830-363392 6.5e-07 2_[+2]_77 chrX:390853-391355 6.5e-07 40_[-2]_39 chrVIII:62490-63044 6.5e-07 37_[+2]_42 chrVII:110404-110943 6.5e-07 52_[-2]_27 chrV:117813-118346 6.5e-07 56_[-2]_23 chrX:538321-538815 7.6e-07 36_[+2]_43 chrVII:857257-857654 7.6e-07 65_[-2]_14 chrI:180890-181481 7.6e-07 5_[+2]_74 chrXII:875204-875644 1e-06 1_[+2]_78 chrVII:115220-115760 1e-06 47_[+2]_32 chrIV:359254-359863 1e-06 68_[+2]_11 chrXIV:374647-375097 1.1e-06 46_[+2]_33 chrXV:287998-288367 1.3e-06 59_[+2]_20 chrVI:210434-210913 1.3e-06 63_[-2]_16 chrVI:167218-167723 1.3e-06 16_[+2]_63 chrXVI:559997-560532 2.1e-06 54_[-2]_25 chrVIII:237744-238165 2.1e-06 14_[-2]_65 chrXIII:923205-924357 5e-06 45_[-2]_34 chrXI:1-1048 5e-06 74_[+2]_5 chrIV:1075299-1075804 7.8e-06 22_[-2]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYDTGGYYYAGTKGKTW MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSBYNYDTGGYYYAGTKGKTW width=21 seqs=94 chrXIV:602086-602530 ( 54) GGTCTCTTGGCCCAGTTGGTT 1 chrXIV:569658-570157 ( 63) GGTCTCTTGGCCCAGTTGGTT 1 chrV:442952-443518 ( 70) GGTCTCTTGGCCCAGTTGGTT 1 chrIX:183088-183846 ( 76) GGTCTCTTGGCCCAGTTGGTT 1 chrII:196696-198337 ( 28) GGTCTCTTGGCCCAGTTGGTT 1 chrX:197132-197630 ( 34) GGGCGTGTGGCGTAGTCGGTA 1 chrVII:774039-774603 ( 78) GGGCGTGTGGCGTAGTCGGTA 1 chrIV:410141-410673 ( 22) GGGCGTGTGGCGTAGTCGGTA 1 chrV:311810-312323 ( 59) GGGCACATGGCGCAGTTGGTA 1 chrXV:663539-664285 ( 3) GGTTTCGTGGTCTAGTCGGTT 1 chrXIII:586395-586972 ( 56) GGTTTCGTGGTCTAGTCGGTT 1 chrXIII:420311-420965 ( 53) GGTTTCGTGGTCTAGTCGGTT 1 chrXI:379457-379929 ( 37) GGTTTCGTGGTCTAGTCGGTT 1 chrXI:307976-308436 ( 41) GGTTTCGTGGTCTAGTCGGTT 1 chrVII:823241-823679 ( 72) GGTTTCGTGGTCTAGTCGGTT 1 chrVII:412123-412612 ( 30) GGTTTCGTGGTCTAGTCGGTT 1 chrVII:73640-74175 ( 25) GGTTTCGTGGTCTAGTCGGTT 1 chrXV:300709-301454 ( 66) GGGCGTGTGGTCTAGTGGTAT 1 chrXIII:195904-196414 ( 41) GGGCGTGTGGTCTAGTGGTAT 1 chrVIII:388666-389228 ( 78) GGGCGTGTGGTCTAGTGGTAT 1 chrXI:46566-47053 ( 27) GCCCTTTTGGCCAAGTGGTAA 1 chrXII:605151-605679 ( 47) GCTCGTGTAGCTCAGTGGTTA 1 chrX:523764-524455 ( 14) GGCAACTTGGCCGAGTGGTTA 1 chrV:86425-86834 ( 25) GGCAACTTGGCCGAGTGGTTA 1 chrIV:980741-981274 ( 78) GGCAACTTGGCCGAGTGGTTA 1 chrIV:884155-884622 ( 23) GCTCGTGTAGCTCAGTGGTTA 1 chrII:226836-227381 ( 17) GGCAACTTGGCCGAGTGGTTA 1 chrXV:113474-114179 ( 26) GCTTCTATGGCCAAGTTGGTA 1 chrXIV:104576-105131 ( 2) GCTTCTATGGCCAAGTTGGTA 1 chrIX:174797-175254 ( 56) GCTTCTATGGCCAAGTTGGTA 1 chrIII:294967-295949 ( 76) GCTTCTATGGCCAAGTTGGTA 1 chrXII:784115-784553 ( 70) GTCCCAGTGGCCGAGTGGTTA 1 chrXV:594065-594709 ( 68) GCGCAAGTGGTTCAGTGGTTA 1 chrIII:227691-228191 ( 51) GGCACTATGGCCGAGTGGTTA 1 chrXVI:810456-810878 ( 59) GACTCCATGGCCAAGTTGGTT 1 chrXV:487194-487704 ( 40) GACTCCATGGCCAAGTTGGTT 1 chrXIV:632382-632886 ( 15) GACTCCATGGCCAAGTTGGTT 1 chrXII:975763-976287 ( 61) GACTCCATGGCCAAGTTGGTT 1 chrXII:731877-732249 ( 77) GGGAGTTTGGCCGAGTGGTTT 1 chrXI:74315-74982 ( 26) GACTCCATGGCCAAGTTGGTT 1 chrX:617762-618155 ( 11) GGGAGTTTGGCCGAGTGGTTT 1 chrVII:730913-731427 ( 17) GACTCCATGGCCAAGTTGGTT 1 chrVI:137107-137946 ( 63) GACTCCATGGCCAAGTTGGTT 1 chrIII:127514-127874 ( 72) GACTCCATGGCCAAGTTGGTT 1 chrXV:281682-282614 ( 66) GCGCAAGTGGTTTAGTGGTAA 1 chrXIII:183722-184205 ( 35) GCGCAAGTGGTTTAGTGGTAA 1 chrX:531489-532153 ( 57) GCGCAAGTGGTTTAGTGGTAA 1 chrX:396523-397107 ( 11) GCGCAAGTGGTTTAGTGGTAA 1 chrVII:930741-931263 ( 51) GCGCAAGTGGTTTAGTGGTAA 1 chrVI:161978-162459 ( 60) GCGCAAGTGGTTTAGTGGTAA 1 chrIV:83262-83830 ( 52) GCGCAAGTGGTTTAGTGGTAA 1 chrIV:802539-803031 ( 47) GGTCCTATAGTGTAGTGGTTA 1 chrIV:644941-645512 ( 28) GGTCCTATAGTGTAGTGGTTA 1 chrIII:168072-168628 ( 52) GGTCCTATAGTGTAGTGGTTA 1 chrXIII:480381-480946 ( 60) GCCTTGTTGGCGCAATCGGTA 1 chrVII:876020-876742 ( 63) GCCTTGTTGGCGCAATCGGTA 1 chrVII:121976-122534 ( 64) GCCTTGTTGGCGCAATCGGTA 1 chrVI:226560-226970 ( 25) GCCTTGTTGGCGCAATCGGTA 1 chrIV:1352295-1352753 ( 44) GCCTTGTTGGCGCAATCGGTA 1 chrXVI:743855-744707 ( 53) GCCTCCTTAGCTTAGTGGTAG 1 chrVIII:466659-467382 ( 20) GCCTCCTTAGCTTAGTGGTAG 1 chrVII:1004005-1004411 ( 58) GCCTCCTTAGCTTAGTGGTAG 1 chrXIII:747692-748265 ( 15) GCTCGCGTGGCGTAATGGCAA 1 chrX:374187-374896 ( 66) GCTCGCGTGGCGTAATGGCAA 1 chrX:355111-355730 ( 4) GCTCGCGTGGCGTAATGGCAA 1 chrVII:405266-405732 ( 21) GCTCGCGTGGCGTAATGGCAA 1 chrIV:1256865-1257313 ( 20) GCGAAAGTGGTTCAGTGGTTA 1 chrXIV:631552-632189 ( 77) GGGCGTGTGGTCTAGAGGTAT 1 chrV:130833-131415 ( 59) GGTTTTATAGTGTAGTGGTTA 1 chrIII:123407-123799 ( 75) GGGCGTGTGGTCTAGAGGTAT 1 chrII:326550-327198 ( 21) GGTCCAATGGTCCAGTGGTTC 1 chrXII:489296-489543 ( 50) GACCGAGTAGTGTAGTGGGTG 1 chrXII:468764-468968 ( 67) GACCGAGTAGTGTAGTGGGTG 1 chrXV:976167-976748 ( 14) GCTTCAGTAGCTCAGTAGGAA 1 chrXIII:362830-363392 ( 3) GCCATCTTAGTATAGTGGTTA 1 chrX:390853-391355 ( 41) GCTTCAGTAGCTCAGTAGGAA 1 chrVIII:62490-63044 ( 38) GCCATCTTAGTATAGTGGTTA 1 chrVII:110404-110943 ( 53) GCCATCTTAGTATAGTGGTTA 1 chrV:117813-118346 ( 57) GGCCTCGTGGCGCACATGGTA 1 chrX:538321-538815 ( 37) GTTCCGTTGGCGTAATGGTAA 1 chrVII:857257-857654 ( 66) GGTTGTTTGGCCGAGCGGTCT 1 chrI:180890-181481 ( 6) GGTTGTTTGGCCGAGCGGTCT 1 chrXII:875204-875644 ( 2) TCCTTGTTAGCTCAGTTGGTA 1 chrVII:115220-115760 ( 48) TCCTTGTTAGCTCAGTTGGTA 1 chrIV:359254-359863 ( 69) TCCTTGTTAGCTCAGTTGGTA 1 chrXIV:374647-375097 ( 47) GCGGACTTAGCTCAGTTGGGA 1 chrXV:287998-288367 ( 60) CTCTCGGTAGCCAAGTTGGTT 1 chrVI:210434-210913 ( 64) CTCTCGGTAGCCAAGTTGGTT 1 chrVI:167218-167723 ( 17) CTCTCGGTAGCCAAGTTGGTT 1 chrXVI:559997-560532 ( 55) GCGGATTTAGCTCAGTTGGGA 1 chrVIII:237744-238165 ( 15) GCGGATTTAGCTCAGTTGGGA 1 chrXIII:923205-924357 ( 46) CGGCACTTGCCTCAGTGGTCT 1 chrXI:1-1048 ( 75) CGGCACTTGCCTCAGCGGTTT 1 chrIV:1075299-1075804 ( 23) GTTCCAATAGTGTAGCGGCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYDTGGYYYAGTKGKTW MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 42160 bayes= 9.23191 E= 1.2e-231 -1320 -176 234 -332 -159 120 120 -232 -1320 104 56 18 -145 127 -250 38 -66 72 24 -15 -91 124 -50 -21 -59 -1320 124 18 -1320 -1320 -1320 165 -21 -1320 200 -1320 -1320 -308 244 -1320 -1320 185 -1320 14 -332 141 37 -32 -91 67 -76 45 165 -1320 -1320 -1320 -159 -408 229 -1320 -332 -208 -1320 153 -391 -9 150 -10 -1320 -1320 247 -1320 -1320 -176 150 45 -38 -250 -250 111 82 -408 -176 22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYDTGGYYYAGTKGKTW MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 94 E= 1.2e-231 0.000000 0.053191 0.914894 0.031915 0.106383 0.414894 0.414894 0.063830 0.000000 0.372340 0.265957 0.361702 0.117021 0.436170 0.031915 0.414894 0.202128 0.297872 0.212766 0.287234 0.170213 0.425532 0.127660 0.276596 0.212766 0.000000 0.425532 0.361702 0.000000 0.000000 0.000000 1.000000 0.276596 0.000000 0.723404 0.000000 0.000000 0.021277 0.978723 0.000000 0.000000 0.648936 0.000000 0.351064 0.031915 0.478723 0.234043 0.255319 0.170213 0.287234 0.106383 0.436170 1.000000 0.000000 0.000000 0.000000 0.106383 0.010638 0.882979 0.000000 0.031915 0.042553 0.000000 0.925532 0.021277 0.170213 0.510638 0.297872 0.000000 0.000000 1.000000 0.000000 0.000000 0.053191 0.510638 0.436170 0.244681 0.031915 0.031915 0.691489 0.563830 0.010638 0.053191 0.372340 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBYNYDTGGYYYAGTKGKTW MEME-2 regular expression -------------------------------------------------------------------------------- G[CG][CTG][CT][CTGA][CT][GTA]T[GA]G[CT][CTG][TC]AGT[GT]G[GT][TA][AT] -------------------------------------------------------------------------------- Time 512.43 secs. ******************************************************************************** ******************************************************************************** MOTIF VGRTGTATGGRTGTW MEME-3 width = 15 sites = 80 llr = 853 E-value = 2.3e-054 ******************************************************************************** -------------------------------------------------------------------------------- Motif VGRTGTATGGRTGTW MEME-3 Description -------------------------------------------------------------------------------- Simplified A 426:::7:::3::14 pos.-specific C 2::::313::::12: probability G 3642a12:9a61812 matrix T 12:8:717::19164 bits 2.5 * 2.2 * * 2.0 * ** 1.7 * ** Relative 1.5 * ** * Entropy 1.2 ** ** ** (15.4 bits) 1.0 *** ** ** 0.7 **** ****** 0.5 ************* 0.2 *************** 0.0 --------------- Multilevel AGATGTATGGGTGTA consensus GAG C C A CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGRTGTATGGRTGTW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrXIII:5307-5810 - 66 2.43e-08 GATTGTGTTA GGGTGTGTGGGTGTG GTGTGTGGGT chrX:703255-703624 + 61 2.43e-08 AATAAATAGT GGATGCATGGGTGCT TCCACGCGTC chrII:89663-89980 + 29 3.01e-08 GTGTTAAAGA GGGTGTATGGATGTA AAGTCACAAA chrXVI:866365-866773 + 68 5.17e-08 CACAGAGGTT TGGTGTATGGGTGTA TTTCCGTTCG chrXII:932072-932539 + 11 7.33e-08 ACAGATGTAC GGATGTACGGATGTA CGGATGTATA chrVI:95471-95852 + 24 7.33e-08 ATACGCAGTC CGGTGTGTGGGTGCA TGACTGATTG chrIII:163432-163890 + 35 8.80e-08 AGCCGCGGTT GGGTGCGTGGGTGCG GTAATTTAAC chrVIII:125884-126323 - 48 1.86e-07 GTAAAGATGT AGGTGTACGGATGCA TTAACGTCTT chrIV:411252-411681 - 18 2.14e-07 TTTGGGTGCC CGGGGTGTGGGTGTT TGATTTGTTT chrXVI:76324-76727 + 67 2.57e-07 ACACATCCGT GGATGTACGGGTGAA AATACAGTCA chrXVI:794445-794796 - 84 3.00e-07 AA ATATGTATGGGTGTT TGGAGATGTT chrXIII:145821-146303 - 71 3.48e-07 GTATGGTGTA TGGTGTATGGATGTA CAAAAATGCT chrXII:5435-5953 - 68 3.48e-07 AGATGTAAGA GAGTGTGTGGGTGTG TGGTGTGTGT chrV:110290-111071 - 47 3.48e-07 TTGTCTATTG AGGTGTCTGGGTGTG TTTGTCACAT chrXV:79725-80138 + 66 4.06e-07 CACTTATTTA ATATGTACGGGTGTT TACATGGAGT chrII:415514-415896 + 27 4.65e-07 CTGGATGACA AAATGCATGGGTGTA AAAAAGGAAA chrIV:835756-836224 - 10 6.09e-07 TGTGCGGTTG CGGGGCGTGGGTGTG CGCGCCGTT chrX:607817-608139 - 67 6.95e-07 GGGTTAAAAA GGATGTATGGATGGA GGGTTGGCAT chrV:85162-85436 - 50 6.95e-07 GAATACATCG AGGGGTATGGGTGGA TGATATCACT chrXVI:378664-379019 + 48 7.90e-07 ATGAGAACTC GAATGTACGGATGTT TTCTCTGAAT chrV:423054-423508 - 40 7.90e-07 TGGGTGTAGA AGGTGTACGGAGGTA AATATGCAGC chrIX:254239-254534 + 21 7.90e-07 GCGGCAATTA GAATGTGTGGGTGCG GAAGCTCGCC chrVI:223928-224154 + 65 9.06e-07 GGGTCTAAGA GTATGTACGGATGTA AAAGAAAACA chrXIV:495182-495645 + 14 1.02e-06 AATTTTTAAA GGAGGTTTGGGTGTG TATAGTGTAC chrXII:498231-499060 - 77 1.02e-06 TTCCTTACA GGATGCACGGAGGTA AACAGGAAAG chrXIII:224081-224382 + 8 1.17e-06 TTCAAAA AAATGTATGGATGTA AAATTCAGTA chrVII:254032-254565 - 79 1.17e-06 TATTGAA AGATGTATGGGTTCA AAAATGTCCG chrXV:216237-216702 - 31 1.32e-06 AGGAAGGCGC GGGTGCTCGGATGTT CCGATAAAAT chrXV:161130-161395 + 33 1.32e-06 ATAGGAATCC CGATGTATGGGTTTG GTTGCCAGAA chrII:181326-181628 - 67 1.32e-06 GTATTCAATG TAATGTATGGGTGCT TTGTAAAGGG chrXVI:188597-188963 - 59 1.49e-06 CCATAGTAAC CGATGCATGGGTTTT AAAAGTCACG chrXII:1028167-1028570 - 79 1.49e-06 TACATTT TGGTGCATGGGTGAT ATTTTGTCTT chrVII:788301-788781 + 37 1.49e-06 TGGGTTTAGA GTATGCACGGATGTT GTAAGGAATA chrVIII:505828-506227 + 23 1.68e-06 TGTCTGGGTG AAATGTATGGATGCA TAATTGTCTC chrV:270380-270673 - 10 1.68e-06 ACATTTAGTG GTATGTATGGGTGAT AAATTTTTT chrVII:726393-726781 - 49 1.88e-06 TGGGTGTATA TAGGGTATGGGTGTA CAGTTAATTT chrIV:1300902-1301343 - 36 1.88e-06 CAAACATCCA CAGTGCACGGATGTT TGAAGGAAAA chrXV:167932-168512 + 15 2.11e-06 AAACTTAAAT ATAGGCACGGGTGTT TAAAGCCGCC chrXII:522178-522421 - 53 3.26e-06 GGAAAACCTT TTGTGTACGGATGTT TAGTTAATAA chrVI:221756-222133 + 25 3.26e-06 TGGGTGTTAA AAATGTACGGGTGAA AAAAGTCTTA chrXVI:699899-700681 - 19 3.62e-06 ATTTAGTATG CTGTGCTTGGGTGTT TTGAAGTGGT chrVIII:175069-175376 - 63 3.62e-06 GGTGTGATGC GGGGGTGGGGGTGTG CATCTCCCCT chrXII:282516-282847 - 25 4.02e-06 CGGAGGGAAA AGATGTACAGGTGTA AAAAAGCACC chrX:651162-651619 - 80 4.46e-06 AATTAT GGGTATATGGGTGTT GTTGTATAAA chrXII:48695-49133 + 38 4.94e-06 AGGGTGTCTA AGATGTACGGATCTT CATTGGGATG chrXV:968171-968423 + 21 5.45e-06 CAAAAGCGTG GGGTGCGTGGGCGTG CGCTGCTCGA chrIV:357981-358482 + 67 5.45e-06 CCTTGTCAGA TAATGTATGGGTGGT GTGTACACCA chrXII:897672-898059 - 45 6.02e-06 TGGGTTTTTT GGAGGTACAGGTGTT GTAGAATTCT chrXI:382225-382449 - 17 6.65e-06 GTGTTGGGTG TGATGTCCGGATGCA ACAGCAGCAA chrVII:438594-438910 + 55 6.65e-06 TAACGTTCCA AAATGTATGGATGGT AAGGTCTTTT chrXV:866509-866969 - 48 7.30e-06 TACAAACCCA GAATGCTTGGATGTA GGGAAAAAAT chrXIV:63114-63584 + 18 9.67e-06 TGGGTTGCTA AAATGTTCGGATGTA AAGTAGTATT chrXVI:520108-520546 - 86 1.06e-05 . CGAGGCCTGGGTGGA ACACTCAGGC chrV:354669-355324 + 82 1.06e-05 ATCATACAGT GTATGTATGGGGTTA GGAG chrXV:505032-505498 - 78 1.16e-05 AAGGTTCA TTGTGTATGGGTTTG AAATGAATGA chrIII:316149-316617 + 38 1.16e-05 TTATGATGGG CGGTGGATGGTGGTA GTAAGTAGAG chrXIV:783480-784304 + 52 1.38e-05 GTAAGTAGAG AGATGGATGGTGGTT GGAGTTGTAG chrXII:10973-11964 - 51 1.38e-05 GTAAGTAGAG AGATGGATGGTGGTT GGGAGTGGTA chrX:745273-745733 + 65 1.38e-05 GTAAGTAGAG AGATGGATGGTGGTT GGGAGTGGTA chrV:551024-551856 - 30 1.38e-05 TCATCTACAC GAAGGGATGGGGGCA TCTGAAGTAT chrXV:978852-979097 + 13 1.64e-05 GTATACACAA GGATGAATGGGTTCT ACGACACCGC chrXV:253801-254099 + 77 1.64e-05 TTTATACGCG CGGTGTACGGATTAA AAAAGTTTT chrIX:99624-100081 + 7 1.64e-05 ATGAAT AAATGTACTGGTGTT ACATGGTGTA chrI:81853-82292 - 62 1.64e-05 CCGCTAGATG AGGTGCAGGGGTCTA TCAAGAACCC chrXII:1071560-1071751 + 38 2.71e-05 AGATGTGAGA GAGTGTGTGGGTATA TATATGTCAC chrX:90014-90436 - 85 2.71e-05 G CCATGTATGGGTGAG AATGTCCAGG chrII:604095-605121 + 18 2.71e-05 TGATTTTGAA AGAGGTTCGGGTCCT CATAAATATT chrXIV:6517-7070 - 61 2.94e-05 GTAAGTAGAG TGATGGATGGTGGTT GGGAGTGGTA chrX:617762-618155 + 81 2.94e-05 TGATATCTTC GGATGCAAGGGTTCG AATCC chrVI:83806-84533 - 48 2.94e-05 TGAACATAAT ATGTGCCTGGTTGCT ATTTTTCGAA chrXI:108659-109089 - 78 3.18e-05 ATGTTGTA ATGTGTTTGGATGAT AATAGTCTTG chrXV:281682-282614 + 34 3.44e-05 TCGCTTAAAT AGAGGAGTGGATGCT CAGGATAACA chrXIV:241386-241748 - 45 3.72e-05 CGTGTATTGA TGGTGTTTAGGTGCT GGATGTTGGG chrII:60175-61324 + 55 3.72e-05 AGTTATATAT AGGTGTGTTGGTTTT GTATTGCTTG chrXII:1018936-1019480 + 8 4.01e-05 CGTTTCC GTGGGTCTGGGTCCA CAACAGAAAA chrII:332260-334559 - 26 4.01e-05 GGATTGTTGA AGATGTGAGGTTGCT GTATGAAAAA chrIX:248605-249020 + 15 4.33e-05 CATTACACCG CGAGTCGTGGGTGCA TTGTAGTTTA chrXI:67796-68005 - 62 4.67e-05 AAATTTGATG CGGTGCACGGATTTC AGCACGGGTT chrVIII:74887-75519 - 16 5.03e-05 TTTTTCTCTT ATGTTTACGGATGTA GAAAATGTAC chrIV:644941-645512 + 56 7.22e-05 ACCGTAACAA CTGTGTATTGTTGTA TTACGGGCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGRTGTATGGRTGTW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:5307-5810 2.4e-08 65_[-3]_20 chrX:703255-703624 2.4e-08 60_[+3]_25 chrII:89663-89980 3e-08 28_[+3]_57 chrXVI:866365-866773 5.2e-08 67_[+3]_18 chrXII:932072-932539 7.3e-08 10_[+3]_75 chrVI:95471-95852 7.3e-08 23_[+3]_62 chrIII:163432-163890 8.8e-08 34_[+3]_51 chrVIII:125884-126323 1.9e-07 47_[-3]_38 chrIV:411252-411681 2.1e-07 17_[-3]_68 chrXVI:76324-76727 2.6e-07 66_[+3]_19 chrXVI:794445-794796 3e-07 83_[-3]_2 chrXIII:145821-146303 3.5e-07 70_[-3]_15 chrXII:5435-5953 3.5e-07 67_[-3]_18 chrV:110290-111071 3.5e-07 46_[-3]_39 chrXV:79725-80138 4.1e-07 65_[+3]_20 chrII:415514-415896 4.7e-07 26_[+3]_59 chrIV:835756-836224 6.1e-07 9_[-3]_76 chrX:607817-608139 7e-07 66_[-3]_19 chrV:85162-85436 7e-07 49_[-3]_36 chrXVI:378664-379019 7.9e-07 47_[+3]_38 chrV:423054-423508 7.9e-07 39_[-3]_46 chrIX:254239-254534 7.9e-07 20_[+3]_65 chrVI:223928-224154 9.1e-07 64_[+3]_21 chrXIV:495182-495645 1e-06 13_[+3]_72 chrXII:498231-499060 1e-06 76_[-3]_9 chrXIII:224081-224382 1.2e-06 7_[+3]_78 chrVII:254032-254565 1.2e-06 78_[-3]_7 chrXV:216237-216702 1.3e-06 30_[-3]_55 chrXV:161130-161395 1.3e-06 32_[+3]_53 chrII:181326-181628 1.3e-06 66_[-3]_19 chrXVI:188597-188963 1.5e-06 58_[-3]_27 chrXII:1028167-1028570 1.5e-06 78_[-3]_7 chrVII:788301-788781 1.5e-06 36_[+3]_49 chrVIII:505828-506227 1.7e-06 22_[+3]_63 chrV:270380-270673 1.7e-06 9_[-3]_76 chrVII:726393-726781 1.9e-06 48_[-3]_37 chrIV:1300902-1301343 1.9e-06 35_[-3]_50 chrXV:167932-168512 2.1e-06 14_[+3]_71 chrXII:522178-522421 3.3e-06 52_[-3]_33 chrVI:221756-222133 3.3e-06 24_[+3]_61 chrXVI:699899-700681 3.6e-06 18_[-3]_67 chrVIII:175069-175376 3.6e-06 62_[-3]_23 chrXII:282516-282847 4e-06 24_[-3]_61 chrX:651162-651619 4.5e-06 79_[-3]_6 chrXII:48695-49133 4.9e-06 37_[+3]_48 chrXV:968171-968423 5.5e-06 20_[+3]_65 chrIV:357981-358482 5.5e-06 66_[+3]_19 chrXII:897672-898059 6e-06 44_[-3]_41 chrXI:382225-382449 6.6e-06 16_[-3]_69 chrVII:438594-438910 6.6e-06 54_[+3]_31 chrXV:866509-866969 7.3e-06 47_[-3]_38 chrXIV:63114-63584 9.7e-06 17_[+3]_68 chrXVI:520108-520546 1.1e-05 85_[-3] chrV:354669-355324 1.1e-05 81_[+3]_4 chrXV:505032-505498 1.2e-05 77_[-3]_8 chrIII:316149-316617 1.2e-05 37_[+3]_48 chrXIV:783480-784304 1.4e-05 51_[+3]_34 chrXII:10973-11964 1.4e-05 50_[-3]_35 chrX:745273-745733 1.4e-05 64_[+3]_21 chrV:551024-551856 1.4e-05 29_[-3]_56 chrXV:978852-979097 1.6e-05 12_[+3]_73 chrXV:253801-254099 1.6e-05 76_[+3]_9 chrIX:99624-100081 1.6e-05 6_[+3]_79 chrI:81853-82292 1.6e-05 61_[-3]_24 chrXII:1071560-1071751 2.7e-05 37_[+3]_48 chrX:90014-90436 2.7e-05 84_[-3]_1 chrII:604095-605121 2.7e-05 17_[+3]_68 chrXIV:6517-7070 2.9e-05 60_[-3]_25 chrX:617762-618155 2.9e-05 80_[+3]_5 chrVI:83806-84533 2.9e-05 47_[-3]_38 chrXI:108659-109089 3.2e-05 77_[-3]_8 chrXV:281682-282614 3.4e-05 33_[+3]_52 chrXIV:241386-241748 3.7e-05 44_[-3]_41 chrII:60175-61324 3.7e-05 54_[+3]_31 chrXII:1018936-1019480 4e-05 7_[+3]_78 chrII:332260-334559 4e-05 25_[-3]_60 chrIX:248605-249020 4.3e-05 14_[+3]_71 chrXI:67796-68005 4.7e-05 61_[-3]_24 chrVIII:74887-75519 5e-05 15_[-3]_70 chrIV:644941-645512 7.2e-05 55_[+3]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGRTGTATGGRTGTW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VGRTGTATGGRTGTW width=15 seqs=80 chrXIII:5307-5810 ( 66) GGGTGTGTGGGTGTG 1 chrX:703255-703624 ( 61) GGATGCATGGGTGCT 1 chrII:89663-89980 ( 29) GGGTGTATGGATGTA 1 chrXVI:866365-866773 ( 68) TGGTGTATGGGTGTA 1 chrXII:932072-932539 ( 11) GGATGTACGGATGTA 1 chrVI:95471-95852 ( 24) CGGTGTGTGGGTGCA 1 chrIII:163432-163890 ( 35) GGGTGCGTGGGTGCG 1 chrVIII:125884-126323 ( 48) AGGTGTACGGATGCA 1 chrIV:411252-411681 ( 18) CGGGGTGTGGGTGTT 1 chrXVI:76324-76727 ( 67) GGATGTACGGGTGAA 1 chrXVI:794445-794796 ( 84) ATATGTATGGGTGTT 1 chrXIII:145821-146303 ( 71) TGGTGTATGGATGTA 1 chrXII:5435-5953 ( 68) GAGTGTGTGGGTGTG 1 chrV:110290-111071 ( 47) AGGTGTCTGGGTGTG 1 chrXV:79725-80138 ( 66) ATATGTACGGGTGTT 1 chrII:415514-415896 ( 27) AAATGCATGGGTGTA 1 chrIV:835756-836224 ( 10) CGGGGCGTGGGTGTG 1 chrX:607817-608139 ( 67) GGATGTATGGATGGA 1 chrV:85162-85436 ( 50) AGGGGTATGGGTGGA 1 chrXVI:378664-379019 ( 48) GAATGTACGGATGTT 1 chrV:423054-423508 ( 40) AGGTGTACGGAGGTA 1 chrIX:254239-254534 ( 21) GAATGTGTGGGTGCG 1 chrVI:223928-224154 ( 65) GTATGTACGGATGTA 1 chrXIV:495182-495645 ( 14) GGAGGTTTGGGTGTG 1 chrXII:498231-499060 ( 77) GGATGCACGGAGGTA 1 chrXIII:224081-224382 ( 8) AAATGTATGGATGTA 1 chrVII:254032-254565 ( 79) AGATGTATGGGTTCA 1 chrXV:216237-216702 ( 31) GGGTGCTCGGATGTT 1 chrXV:161130-161395 ( 33) CGATGTATGGGTTTG 1 chrII:181326-181628 ( 67) TAATGTATGGGTGCT 1 chrXVI:188597-188963 ( 59) CGATGCATGGGTTTT 1 chrXII:1028167-1028570 ( 79) TGGTGCATGGGTGAT 1 chrVII:788301-788781 ( 37) GTATGCACGGATGTT 1 chrVIII:505828-506227 ( 23) AAATGTATGGATGCA 1 chrV:270380-270673 ( 10) GTATGTATGGGTGAT 1 chrVII:726393-726781 ( 49) TAGGGTATGGGTGTA 1 chrIV:1300902-1301343 ( 36) CAGTGCACGGATGTT 1 chrXV:167932-168512 ( 15) ATAGGCACGGGTGTT 1 chrXII:522178-522421 ( 53) TTGTGTACGGATGTT 1 chrVI:221756-222133 ( 25) AAATGTACGGGTGAA 1 chrXVI:699899-700681 ( 19) CTGTGCTTGGGTGTT 1 chrVIII:175069-175376 ( 63) GGGGGTGGGGGTGTG 1 chrXII:282516-282847 ( 25) AGATGTACAGGTGTA 1 chrX:651162-651619 ( 80) GGGTATATGGGTGTT 1 chrXII:48695-49133 ( 38) AGATGTACGGATCTT 1 chrXV:968171-968423 ( 21) GGGTGCGTGGGCGTG 1 chrIV:357981-358482 ( 67) TAATGTATGGGTGGT 1 chrXII:897672-898059 ( 45) GGAGGTACAGGTGTT 1 chrXI:382225-382449 ( 17) TGATGTCCGGATGCA 1 chrVII:438594-438910 ( 55) AAATGTATGGATGGT 1 chrXV:866509-866969 ( 48) GAATGCTTGGATGTA 1 chrXIV:63114-63584 ( 18) AAATGTTCGGATGTA 1 chrXVI:520108-520546 ( 86) CGAGGCCTGGGTGGA 1 chrV:354669-355324 ( 82) GTATGTATGGGGTTA 1 chrXV:505032-505498 ( 78) TTGTGTATGGGTTTG 1 chrIII:316149-316617 ( 38) CGGTGGATGGTGGTA 1 chrXIV:783480-784304 ( 52) AGATGGATGGTGGTT 1 chrXII:10973-11964 ( 51) AGATGGATGGTGGTT 1 chrX:745273-745733 ( 65) AGATGGATGGTGGTT 1 chrV:551024-551856 ( 30) GAAGGGATGGGGGCA 1 chrXV:978852-979097 ( 13) GGATGAATGGGTTCT 1 chrXV:253801-254099 ( 77) CGGTGTACGGATTAA 1 chrIX:99624-100081 ( 7) AAATGTACTGGTGTT 1 chrI:81853-82292 ( 62) AGGTGCAGGGGTCTA 1 chrXII:1071560-1071751 ( 38) GAGTGTGTGGGTATA 1 chrX:90014-90436 ( 85) CCATGTATGGGTGAG 1 chrII:604095-605121 ( 18) AGAGGTTCGGGTCCT 1 chrXIV:6517-7070 ( 61) TGATGGATGGTGGTT 1 chrX:617762-618155 ( 81) GGATGCAAGGGTTCG 1 chrVI:83806-84533 ( 48) ATGTGCCTGGTTGCT 1 chrXI:108659-109089 ( 78) ATGTGTTTGGATGAT 1 chrXV:281682-282614 ( 34) AGAGGAGTGGATGCT 1 chrXIV:241386-241748 ( 45) TGGTGTTTAGGTGCT 1 chrII:60175-61324 ( 55) AGGTGTGTTGGTTTT 1 chrXII:1018936-1019480 ( 8) GTGGGTCTGGGTCCA 1 chrII:332260-334559 ( 26) AGATGTGAGGTTGCT 1 chrIX:248605-249020 ( 15) CGAGTCGTGGGTGCA 1 chrXI:67796-68005 ( 62) CGGTGCACGGATTTC 1 chrVIII:74887-75519 ( 16) ATGTTTACGGATGTA 1 chrIV:644941-645512 ( 56) CTGTGTATTGTTGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGRTGTATGGRTGTW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 45322 bayes= 9.39539 E= 2.3e-054 13 -5 90 -122 -59 -385 170 -77 82 -1297 128 -1297 -1297 -1297 -5 137 -467 -1297 241 -367 -367 47 -127 102 105 -153 -5 -167 -367 73 -285 102 -309 -1297 236 -309 -1297 -1297 247 -1297 -3 -1297 170 -167 -1297 -385 -68 145 -467 -185 217 -135 -187 40 -153 94 37 -385 -15 37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGRTGTATGGRTGTW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 80 E= 2.3e-054 0.350000 0.175000 0.337500 0.137500 0.212500 0.012500 0.587500 0.187500 0.562500 0.000000 0.437500 0.000000 0.000000 0.000000 0.175000 0.825000 0.012500 0.000000 0.962500 0.025000 0.025000 0.250000 0.075000 0.650000 0.662500 0.062500 0.175000 0.100000 0.025000 0.300000 0.025000 0.650000 0.037500 0.000000 0.925000 0.037500 0.000000 0.000000 1.000000 0.000000 0.312500 0.000000 0.587500 0.100000 0.000000 0.012500 0.112500 0.875000 0.012500 0.050000 0.812500 0.125000 0.087500 0.237500 0.062500 0.612500 0.412500 0.012500 0.162500 0.412500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VGRTGTATGGRTGTW MEME-3 regular expression -------------------------------------------------------------------------------- [AG][GA][AG]TG[TC]A[TC]GG[GA]TG[TC][AT] -------------------------------------------------------------------------------- Time 752.10 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:8-1095 4.49e-02 41_[+2(1.64e-05)]_38 chrI:81853-82292 6.56e-03 61_[-3(1.64e-05)]_24 chrI:138804-139391 5.96e-01 100 chrI:141631-141892 8.90e-01 100 chrI:166035-166652 3.09e-08 16_[-1(6.00e-12)]_60 chrI:180890-181481 1.21e-03 5_[+2(7.61e-07)]_74 chrI:182344-183155 2.38e-02 100 chrI:229260-230190 3.50e-01 100 chrII:9355-10003 5.60e-05 9_[+1(6.37e-08)]_67 chrII:36150-36561 9.22e-01 100 chrII:44924-45340 5.92e-01 100 chrII:60175-61324 8.42e-02 54_[+3(3.72e-05)]_31 chrII:88053-88546 4.73e-01 100 chrII:89663-89980 2.28e-04 8_[+3(7.30e-06)]_5_[+3(3.01e-08)]_\ 57 chrII:167656-168215 8.64e-01 100 chrII:170604-171201 5.90e-01 100 chrII:181326-181628 7.47e-03 66_[-3(1.32e-06)]_19 chrII:196696-198337 9.87e-14 27_[+2(3.02e-10)]_23_[-1(2.16e-11)]_\ 5 chrII:226836-227381 1.34e-06 16_[+2(6.30e-09)]_31_[-1(5.11e-05)]_\ 8 chrII:265540-266744 6.17e-01 100 chrII:326550-327198 5.31e-06 20_[-2(2.13e-07)]_59 chrII:332260-334559 4.00e-03 25_[-3(4.01e-05)]_60 chrII:347389-348018 5.79e-05 5_[+1(6.37e-08)]_71 chrII:350383-351165 8.97e-01 100 chrII:405094-406252 5.23e-01 100 chrII:415514-415896 2.90e-04 26_[+3(4.65e-07)]_59 chrII:477019-477737 1.26e-01 100 chrII:544440-544853 1.28e-01 100 chrII:592386-593551 5.03e-02 100 chrII:604095-605121 3.21e-02 17_[+3(2.71e-05)]_68 chrII:605608-607044 3.90e-02 100 chrII:642875-643361 6.50e-01 100 chrII:644939-645847 9.93e-01 100 chrII:681363-682185 8.35e-01 100 chrIII:7-1369 6.48e-01 100 chrIII:14066-16585 8.31e-01 100 chrIII:82119-82777 2.01e-06 69_[+1(1.13e-09)]_7 chrIII:123407-123799 1.22e-13 29_[+1(4.21e-13)]_21_[-2(1.61e-07)]_\ 5 chrIII:127514-127874 2.47e-04 71_[+2(2.07e-08)]_8 chrIII:142353-143395 7.59e-01 100 chrIII:163432-163890 1.27e-04 34_[+3(8.80e-08)]_51 chrIII:168072-168628 4.71e-10 6_[+1(4.69e-09)]_21_[-2(5.23e-08)]_\ 28 chrIII:168939-169210 1.81e-01 100 chrIII:177098-178778 5.84e-01 100 chrIII:227691-228191 1.14e-05 50_[+2(1.24e-08)]_29 chrIII:262732-262968 1.29e-01 100 chrIII:293719-294442 6.27e-01 100 chrIII:294967-295949 1.94e-05 75_[+2(9.55e-09)]_4 chrIII:316149-316617 3.46e-02 37_[+3(1.16e-05)]_10_[+3(1.38e-05)]_\ 23 chrIV:31-382 9.28e-02 100 chrIV:83262-83830 1.21e-04 51_[+2(4.68e-08)]_28 chrIV:116785-118221 1.41e-01 100 chrIV:129968-131040 2.66e-01 100 chrIV:217093-218060 2.85e-02 24_[+2(9.14e-05)]_55 chrIV:220963-222366 7.33e-01 100 chrIV:229420-230354 9.63e-01 100 chrIV:308010-308906 4.51e-01 100 chrIV:321556-321935 4.02e-01 100 chrIV:322191-323590 7.59e-01 100 chrIV:340300-341712 2.25e-01 100 chrIV:357981-358482 1.96e-02 66_[+3(5.45e-06)]_19 chrIV:359254-359863 3.27e-03 68_[+2(1.03e-06)]_11 chrIV:410141-410673 4.67e-12 21_[+2(3.69e-10)]_22_[-1(1.55e-09)]_\ 12 chrIV:411252-411681 1.70e-04 17_[-3(2.14e-07)]_68 chrIV:434036-435071 9.71e-01 100 chrIV:437472-438529 9.57e-01 100 chrIV:488390-489119 5.31e-01 100 chrIV:490442-491252 6.25e-01 100 chrIV:508115-509522 1.65e-01 100 chrIV:519528-521401 4.41e-01 100 chrIV:540787-541844 5.15e-01 100 chrIV:568495-569792 4.54e-01 100 chrIV:579014-580916 5.39e-01 100 chrIV:619637-620328 1.83e-04 42_[+1(2.72e-08)]_34 chrIV:644941-645512 8.13e-07 27_[-2(5.23e-08)]_7_[+3(7.22e-05)]_\ 30 chrIV:667705-668249 4.00e-01 100 chrIV:802539-803031 4.71e-10 1_[+1(4.69e-09)]_21_[-2(5.23e-08)]_\ 33 chrIV:835756-836224 1.19e-03 9_[-3(6.09e-07)]_76 chrIV:884155-884622 3.36e-06 22_[+2(6.30e-09)]_57 chrIV:946138-946595 4.12e-05 54_[-1(8.20e-09)]_22 chrIV:974351-974683 7.35e-01 100 chrIV:980741-981274 1.34e-06 22_[+1(5.11e-05)]_31_[-2(6.30e-09)]_\ 2 chrIV:992599-993470 1.13e-01 100 chrIV:1012642-1013924 8.60e-01 100 chrIV:1016901-1017661 5.61e-02 26_[-2(6.08e-05)]_53 chrIV:1075299-1075804 2.07e-02 22_[-2(7.81e-06)]_57 chrIV:1095007-1095749 1.11e-05 47_[+1(6.22e-09)]_29 chrIV:1150223-1151898 8.62e-01 100 chrIV:1175571-1176233 4.00e-05 19_[-1(1.17e-08)]_57 chrIV:1200966-1202369 6.54e-01 100 chrIV:1233339-1234112 3.50e-01 100 chrIV:1256865-1257313 8.58e-05 19_[-2(8.89e-08)]_60 chrIV:1300902-1301343 3.47e-03 35_[-3(1.88e-06)]_1_[+3(1.64e-05)]_\ 34 chrIV:1305227-1305904 9.84e-01 100 chrIV:1352295-1352753 1.30e-04 43_[-2(7.22e-08)]_36 chrIV:1355739-1356128 2.11e-01 100 chrIV:1359185-1360208 7.29e-01 100 chrIV:1401216-1401960 2.16e-01 100 chrIV:1450562-1451293 4.22e-01 100 chrIV:1461523-1462335 3.14e-01 100 chrIV:1525380-1525667 9.66e-01 100 chrIX:2-262 5.70e-01 100 chrIX:67005-69022 5.91e-01 100 chrIX:99624-100081 1.99e-02 6_[+3(1.64e-05)]_79 chrIX:174797-175254 6.90e-05 55_[+2(9.55e-09)]_24 chrIX:183088-183846 9.10e-14 28_[+1(2.16e-11)]_23_[-2(3.02e-10)]_\ 4 chrIX:197022-198151 7.23e-02 55_[+2(6.08e-05)]_24 chrIX:210502-211210 9.56e-01 100 chrIX:231270-232312 5.01e-01 100 chrIX:248605-249020 7.21e-02 14_[+3(4.33e-05)]_71 chrIX:254239-254534 1.81e-03 20_[+3(7.90e-07)]_65 chrIX:257358-258149 1.46e-01 100 chrIX:299208-299566 9.68e-01 100 chrIX:300014-300886 1.87e-01 100 chrIX:316088-317279 9.72e-01 100 chrIX:324013-324617 8.68e-05 43_[+1(5.92e-08)]_33 chrIX:325385-326276 9.47e-06 10_[-1(1.01e-09)]_66 chrIX:336130-336794 9.46e-01 100 chrIX:370139-370675 1.30e-01 59_[+2(9.14e-05)]_20 chrIX:438512-439884 1.82e-01 100 chrM:58232-58694 9.03e-01 100 chrV:6143-6661 2.96e-01 100 chrV:52015-52832 9.70e-01 100 chrV:53526-54353 3.21e-01 100 chrV:61056-62200 5.22e-01 100 chrV:85162-85436 5.44e-04 20_[-3(6.65e-06)]_14_[-3(6.95e-07)]_\ 36 chrV:86425-86834 1.34e-06 24_[+2(6.30e-09)]_31_[-1(5.11e-05)] chrV:99798-100350 6.73e-01 100 chrV:101172-101544 4.52e-01 100 chrV:109881-110087 5.76e-01 100 chrV:110290-111071 7.28e-04 46_[-3(3.48e-07)]_39 chrV:117813-118346 9.23e-04 56_[-2(6.50e-07)]_23 chrV:130833-131415 1.34e-09 13_[+1(4.69e-09)]_21_[-2(1.61e-07)]_\ 21 chrV:135155-135718 6.67e-07 44_[+1(1.72e-10)]_32 chrV:138202-138965 3.08e-01 100 chrV:139619-140901 4.58e-01 100 chrV:151686-151905 8.90e-01 100 chrV:152177-152677 1.39e-01 100 chrV:176647-177508 1.02e-01 71_[+2(9.14e-05)]_8 chrV:206760-207762 4.43e-01 100 chrV:250107-251428 1.41e-01 10_[-2(9.77e-05)]_69 chrV:270380-270673 1.07e-02 9_[-3(1.68e-06)]_24_[-3(3.44e-05)]_\ 37 chrV:287472-288789 6.95e-01 100 chrV:305309-306903 3.86e-01 100 chrV:311810-312323 8.12e-14 12_[+1(6.00e-12)]_22_[-2(1.33e-09)]_\ 21 chrV:322007-323010 8.21e-01 100 chrV:354669-355324 3.88e-08 29_[-1(1.13e-09)]_28_[+3(1.06e-05)]_\ 4 chrV:362103-362470 8.25e-01 100 chrV:363700-364416 4.36e-01 100 chrV:396163-397959 3.27e-01 100 chrV:406130-408285 8.92e-01 100 chrV:408483-409249 6.61e-01 100 chrV:423054-423508 2.62e-03 39_[-3(7.90e-07)]_46 chrV:430976-431591 4.29e-02 100 chrV:434387-436065 7.95e-01 100 chrV:438067-439007 5.01e-01 100 chrV:441758-442656 8.92e-01 100 chrV:442952-443518 1.04e-13 22_[+1(2.16e-11)]_23_[-2(3.02e-10)]_\ 10 chrV:449285-460269 6.00e-02 100 chrV:460503-461456 2.18e-01 100 chrV:462370-462885 1.97e-02 73_[+1(2.66e-05)]_3 chrV:463077-473092 1.97e-01 100 chrV:475220-482896 5.05e-01 100 chrV:483327-487878 9.69e-01 100 chrV:488097-490939 2.63e-01 100 chrV:491177-492785 2.97e-02 100 chrV:498459-499221 9.65e-01 100 chrV:551024-551856 1.30e-02 29_[-3(1.38e-05)]_56 chrVI:4460-5423 2.27e-02 100 chrVI:64159-65414 2.11e-01 100 chrVI:83806-84533 3.62e-02 47_[-3(2.94e-05)]_38 chrVI:95471-95852 6.64e-05 23_[+3(7.33e-08)]_62 chrVI:100977-101711 9.57e-01 100 chrVI:133855-134611 9.34e-01 100 chrVI:137107-137946 8.02e-10 15_[+1(6.22e-09)]_23_[-2(2.07e-08)]_\ 17 chrVI:157570-158606 9.10e-01 100 chrVI:161978-162459 2.94e-04 59_[+2(4.68e-08)]_20 chrVI:167218-167723 5.15e-08 16_[+2(1.29e-06)]_38_[-1(8.20e-09)]_\ 1 chrVI:180595-181281 8.76e-01 100 chrVI:190762-191846 5.29e-01 100 chrVI:204771-205640 7.84e-01 100 chrVI:210434-210913 5.15e-08 1_[+1(8.20e-09)]_38_[-2(1.29e-06)]_\ 16 chrVI:221756-222133 5.42e-03 24_[+3(3.26e-06)]_61 chrVI:223928-224154 3.33e-03 64_[+3(9.06e-07)]_21 chrVI:226560-226970 1.13e-04 24_[-2(7.22e-08)]_55 chrVI:269767-270156 7.23e-02 100 chrVII:517-1108 5.20e-01 100 chrVII:73640-74175 1.04e-05 24_[-2(2.19e-09)]_55 chrVII:110404-110943 3.67e-07 7_[+1(1.59e-07)]_21_[-2(6.50e-07)]_\ 27 chrVII:115220-115760 4.97e-03 47_[+2(1.03e-06)]_32 chrVII:121976-122534 8.46e-04 63_[+2(7.22e-08)]_16 chrVII:148529-149782 3.02e-01 100 chrVII:185278-186042 2.50e-01 100 chrVII:205007-205767 7.13e-01 100 chrVII:254032-254565 7.08e-04 78_[-3(1.17e-06)]_7 chrVII:276926-277403 2.83e-01 100 chrVII:286149-287805 6.37e-01 100 chrVII:288054-288235 8.72e-01 100 chrVII:310358-311957 5.48e-01 100 chrVII:316923-317357 8.21e-01 100 chrVII:319583-320293 4.04e-01 100 chrVII:328312-329262 8.27e-01 100 chrVII:364912-366656 9.74e-01 100 chrVII:400785-401779 5.47e-02 100 chrVII:405266-405732 4.59e-11 20_[+2(8.89e-08)]_21_[-1(5.95e-11)]_\ 14 chrVII:412123-412612 4.04e-06 29_[-2(2.19e-09)]_50 chrVII:422873-423549 3.33e-01 100 chrVII:438594-438910 1.86e-02 31_[+3(2.71e-05)]_8_[+3(6.65e-06)]_\ 31 chrVII:439103-439810 9.57e-01 100 chrVII:440299-441426 4.36e-01 100 chrVII:531409-531795 7.01e-03 57_[+2(6.51e-05)]_22 chrVII:534472-535233 2.85e-01 100 chrVII:541600-542221 2.51e-06 31_[-1(1.13e-09)]_45 chrVII:544390-546119 9.71e-01 100 chrVII:554788-556708 9.88e-01 100 chrVII:561027-561967 8.13e-01 100 chrVII:648201-648449 7.19e-01 100 chrVII:648763-649425 9.79e-02 100 chrVII:661267-661964 1.82e-01 100 chrVII:662163-662423 8.17e-01 100 chrVII:700192-701348 2.66e-06 6_[-1(7.93e-08)]_70 chrVII:706916-707338 1.47e-04 36_[+1(4.72e-08)]_40 chrVII:726393-726781 7.60e-03 48_[-3(1.88e-06)]_2_[-3(1.88e-06)]_\ 20 chrVII:730913-731427 8.02e-10 16_[+2(2.07e-08)]_23_[-1(6.22e-09)]_\ 16 chrVII:736179-736648 1.29e-06 18_[-1(5.95e-11)]_58 chrVII:738478-739364 6.70e-01 100 chrVII:774039-774603 3.14e-06 77_[+2(3.69e-10)]_2 chrVII:778243-779905 1.55e-01 100 chrVII:788301-788781 2.07e-03 36_[+3(1.49e-06)]_49 chrVII:794043-794688 2.45e-01 100 chrVII:823241-823679 1.20e-05 71_[+2(2.19e-09)]_8 chrVII:828334-829152 9.27e-07 35_[+1(5.95e-11)]_41 chrVII:835847-836402 1.14e-01 100 chrVII:845301-845888 6.13e-01 100 chrVII:857257-857654 8.64e-04 65_[-2(7.61e-07)]_14 chrVII:876020-876742 6.07e-04 62_[+2(7.22e-08)]_17 chrVII:878637-879266 6.43e-01 100 chrVII:914873-915185 5.07e-01 100 chrVII:930741-931263 1.78e-11 6_[+1(4.49e-11)]_20_[-2(4.68e-08)]_\ 29 chrVII:1004005-1004411 5.54e-04 57_[+2(8.02e-08)]_22 chrVIII:62490-63044 1.46e-03 37_[+2(6.50e-07)]_42 chrVIII:74887-75519 1.06e-01 15_[-3(5.03e-05)]_70 chrVIII:85039-85585 2.16e-06 41_[+1(1.51e-10)]_35 chrVIII:103878-104291 3.30e-01 100 chrVIII:115976-116450 7.26e-01 100 chrVIII:125884-126323 1.21e-03 47_[-3(1.86e-07)]_38 chrVIII:132777-134656 9.03e-01 100 chrVIII:145920-146455 7.71e-01 100 chrVIII:147488-147696 5.20e-01 100 chrVIII:147893-148710 3.56e-01 100 chrVIII:148941-149348 2.89e-01 100 chrVIII:175069-175376 2.28e-03 8_[-3(3.72e-05)]_39_[-3(3.62e-06)]_\ 23 chrVIII:214140-214363 7.73e-01 100 chrVIII:237744-238165 3.02e-03 14_[-2(2.09e-06)]_65 chrVIII:296770-297256 8.31e-02 100 chrVIII:358245-359248 6.50e-01 100 chrVIII:375356-375866 5.47e-01 100 chrVIII:381503-383421 3.68e-01 100 chrVIII:388666-389228 3.68e-12 1_[+1(2.51e-10)]_52_[-2(4.07e-09)]_\ 2 chrVIII:411091-411860 3.72e-01 100 chrVIII:466659-467382 9.00e-09 19_[+2(8.02e-08)]_21_[-1(2.31e-08)]_\ 15 chrVIII:475295-475909 7.82e-01 100 chrVIII:488356-488632 4.33e-01 100 chrVIII:505828-506227 1.02e-02 22_[+3(1.68e-06)]_63 chrVIII:553499-553877 4.55e-01 100 chrVIII:555945-557216 3.82e-01 100 chrVIII:562242-562573 6.90e-01 100 chrX:58711-59525 3.09e-06 37_[+1(1.01e-09)]_39 chrX:73113-74270 9.53e-01 100 chrX:74898-76464 7.39e-02 100 chrX:90014-90436 5.17e-02 84_[-3(2.71e-05)]_1 chrX:115427-116253 2.43e-01 100 chrX:139204-140247 7.19e-01 100 chrX:157440-157956 1.89e-01 100 chrX:172724-173028 3.60e-01 100 chrX:197132-197630 2.97e-06 33_[-2(3.69e-10)]_46 chrX:204321-205003 6.60e-01 100 chrX:227822-229034 9.21e-01 100 chrX:233676-234547 8.22e-01 100 chrX:353636-354592 3.41e-01 100 chrX:355111-355730 8.83e-12 3_[+2(8.89e-08)]_21_[-1(5.95e-11)]_\ 31 chrX:374187-374896 8.83e-12 20_[+1(5.95e-11)]_21_[-2(8.89e-08)]_\ 14 chrX:377808-378587 4.28e-01 100 chrX:390853-391355 6.44e-04 40_[-2(6.50e-07)]_39 chrX:396523-397107 2.76e-04 10_[-2(4.68e-08)]_69 chrX:414787-415358 7.01e-01 100 chrX:415815-416447 7.48e-01 100 chrX:422006-423686 7.27e-01 100 chrX:424327-424769 5.60e-01 100 chrX:517645-518216 8.26e-01 100 chrX:523764-524455 1.16e-05 13_[-2(6.30e-09)]_66 chrX:531489-532153 9.02e-05 56_[+2(4.68e-08)]_23 chrX:538321-538815 1.87e-03 36_[+2(7.61e-07)]_43 chrX:541295-541833 8.68e-05 35_[-1(5.92e-08)]_41 chrX:542770-543839 5.43e-01 100 chrX:554637-554896 2.61e-01 100 chrX:607817-608139 2.65e-03 66_[-3(6.95e-07)]_3_[-3(2.50e-05)]_\ 1 chrX:617762-618155 5.20e-07 10_[+2(2.07e-08)]_49_[+3(2.94e-05)]_\ 5 chrX:651162-651619 7.79e-03 79_[-3(4.46e-06)]_6 chrX:683676-684577 9.71e-01 100 chrX:703255-703624 2.15e-04 60_[+3(2.43e-08)]_25 chrX:745273-745733 4.58e-02 64_[+3(1.38e-05)]_21 chrXI:1-1048 1.96e-02 74_[+2(5.01e-06)]_5 chrXI:46566-47053 4.46e-05 26_[-2(5.46e-09)]_53 chrXI:67796-68005 7.69e-02 61_[-3(4.67e-05)]_24 chrXI:74315-74982 8.02e-10 25_[+2(2.07e-08)]_23_[-1(6.22e-09)]_\ 7 chrXI:83855-84445 6.53e-01 100 chrXI:108659-109089 4.47e-02 77_[-3(3.18e-05)]_8 chrXI:140758-141462 1.60e-01 8_[-2(9.14e-05)]_71 chrXI:158177-159363 7.76e-01 100 chrXI:162016-162806 6.47e-01 100 chrXI:202820-203289 6.44e-07 37_[-1(1.72e-10)]_39 chrXI:219557-220107 9.47e-01 100 chrXI:302036-303802 8.11e-02 100 chrXI:307976-308436 1.04e-05 40_[-2(2.19e-09)]_39 chrXI:309164-309879 4.66e-01 100 chrXI:313112-313708 2.45e-04 46_[+1(1.59e-07)]_30 chrXI:313972-314216 9.56e-01 100 chrXI:379457-379929 8.37e-06 36_[+2(2.19e-09)]_43 chrXI:382225-382449 6.16e-04 16_[-3(6.65e-06)]_41_[-3(1.51e-05)]_\ 13 chrXI:430820-431652 1.82e-01 100 chrXI:458335-459018 2.62e-01 100 chrXI:490088-491221 7.20e-01 100 chrXI:513211-513804 4.51e-01 100 chrXI:517750-518114 8.73e-01 100 chrXI:578758-579330 9.12e-07 36_[-1(7.24e-10)]_40 chrXI:589812-590112 1.67e-01 100 chrXI:617692-618072 8.88e-01 100 chrXI:618356-619342 1.64e-01 100 chrXI:665671-666795 6.19e-01 100 chrXII:6-269 1.84e-01 100 chrXII:5435-5953 8.03e-04 20_[-3(3.00e-07)]_15_[-3(4.06e-07)]_\ 2_[-3(3.48e-07)]_18 chrXII:10973-11964 2.36e-02 50_[-3(1.38e-05)]_14_[-3(2.71e-05)]_\ 6 chrXII:48695-49133 2.02e-02 37_[+3(4.94e-06)]_48 chrXII:91671-92922 8.78e-01 100 chrXII:97169-97797 8.25e-01 100 chrXII:167625-168630 4.80e-01 100 chrXII:214626-215182 4.99e-08 34_[+1(6.00e-12)]_42 chrXII:241326-242016 8.03e-01 100 chrXII:262753-263942 1.50e-01 100 chrXII:282516-282847 2.31e-02 24_[-3(4.02e-06)]_2_[-3(2.50e-05)]_\ 44 chrXII:348250-348665 9.59e-01 100 chrXII:365990-366615 5.36e-01 100 chrXII:374192-374699 2.16e-04 2_[-1(2.72e-08)]_74 chrXII:426852-427771 4.04e-01 100 chrXII:448520-449055 8.78e-01 100 chrXII:468764-468968 3.78e-04 66_[+2(2.80e-07)]_13 chrXII:489296-489543 3.78e-04 49_[+2(2.80e-07)]_30 chrXII:498231-499060 1.73e-04 76_[-3(1.02e-06)]_9 chrXII:522178-522421 2.00e-02 27_[-3(7.74e-05)]_10_[-3(3.26e-06)]_\ 33 chrXII:588453-589360 9.39e-01 100 chrXII:590008-590271 7.82e-01 100 chrXII:592350-593173 8.02e-01 100 chrXII:605151-605679 3.36e-06 46_[-2(6.30e-09)]_33 chrXII:628125-628901 4.00e-01 100 chrXII:656700-657192 5.63e-06 43_[+1(1.55e-09)]_33 chrXII:673202-674566 2.81e-01 100 chrXII:687668-688371 4.83e-01 100 chrXII:712272-713621 9.89e-01 100 chrXII:731877-732249 5.84e-05 76_[+2(2.07e-08)]_3 chrXII:734706-735311 9.37e-01 100 chrXII:780828-781906 4.85e-01 100 chrXII:784115-784553 5.26e-06 69_[+2(1.09e-08)]_10 chrXII:793705-795223 5.34e-01 100 chrXII:796313-797417 1.27e-01 100 chrXII:805376-805691 2.31e-01 100 chrXII:817883-819809 9.52e-01 100 chrXII:855881-857575 2.78e-01 100 chrXII:875204-875644 1.53e-09 1_[+2(1.03e-06)]_45_[-1(7.24e-10)]_\ 9 chrXII:897672-898059 2.08e-02 44_[-3(6.02e-06)]_41 chrXII:898636-899578 5.26e-01 100 chrXII:921796-922596 1.11e-01 100 chrXII:932072-932539 5.78e-04 10_[+3(7.33e-08)]_18_[+3(6.02e-06)]_\ 42 chrXII:962778-963448 8.15e-01 100 chrXII:975763-976287 8.02e-10 13_[+1(6.22e-09)]_23_[-2(2.07e-08)]_\ 19 chrXII:1018936-1019480 7.81e-02 7_[+3(4.01e-05)]_78 chrXII:1028167-1028570 3.55e-03 78_[-3(1.49e-06)]_7 chrXII:1051856-1052967 4.27e-01 100 chrXII:1064040-1065382 2.00e-01 100 chrXII:1071560-1071751 8.60e-02 37_[+3(2.71e-05)]_48 chrXIII:5307-5810 3.02e-04 33_[-3(3.00e-07)]_17_[-3(2.43e-08)]_\ 20 chrXIII:91566-92069 3.57e-01 100 chrXIII:123796-124726 2.39e-01 100 chrXIII:131265-132343 2.61e-07 76_[+1(5.95e-11)] chrXIII:145821-146303 4.05e-04 70_[-3(3.48e-07)]_15 chrXIII:168579-169350 8.70e-02 100 chrXIII:183722-184205 1.92e-04 34_[-2(4.68e-08)]_45 chrXIII:195904-196414 2.00e-05 40_[-2(4.07e-09)]_39 chrXIII:224081-224382 6.02e-03 7_[+3(1.17e-06)]_10_[+3(8.04e-06)]_\ 53 chrXIII:225287-226324 3.18e-01 100 chrXIII:259033-259847 3.77e-01 100 chrXIII:267658-269849 5.13e-01 100 chrXIII:289523-291152 8.42e-01 100 chrXIII:296718-299412 7.85e-01 100 chrXIII:320952-321341 1.71e-06 56_[+1(1.55e-09)]_20 chrXIII:352061-352433 5.27e-01 100 chrXIII:362830-363392 3.67e-07 2_[+2(6.50e-07)]_21_[-1(1.59e-07)]_\ 32 chrXIII:372183-372748 2.14e-06 35_[+1(1.51e-10)]_41 chrXIII:378623-380009 1.26e-04 42_[+1(1.21e-07)]_34 chrXIII:420311-420965 1.72e-12 5_[+1(1.51e-10)]_23_[-2(2.19e-09)]_\ 27 chrXIII:463209-464131 4.61e-01 100 chrXIII:480381-480946 2.23e-11 13_[+1(1.72e-10)]_22_[-2(7.22e-08)]_\ 20 chrXIII:504612-505286 7.56e-01 100 chrXIII:550721-553410 9.82e-01 100 chrXIII:572691-573482 4.55e-02 100 chrXIII:586395-586972 2.17e-12 8_[+1(1.51e-10)]_23_[-2(2.19e-09)]_\ 24 chrXIII:631740-633575 4.43e-02 100 chrXIII:650723-651677 6.64e-01 100 chrXIII:731477-733593 8.78e-01 100 chrXIII:747692-748265 6.72e-04 14_[-2(8.89e-08)]_65 chrXIII:754423-754885 9.87e-01 100 chrXIII:761556-763121 7.33e-02 100 chrXIII:767255-768660 4.95e-01 100 chrXIII:807675-808590 9.22e-01 100 chrXIII:837106-838487 8.01e-01 100 chrXIII:861203-861414 1.16e-01 100 chrXIII:872672-872938 1.46e-01 100 chrXIII:923205-924357 9.49e-03 45_[-2(5.01e-06)]_34 chrXIV:6517-7070 1.12e-02 60_[-3(2.94e-05)]_25 chrXIV:63114-63584 6.94e-03 17_[+3(9.67e-06)]_68 chrXIV:96056-96651 4.50e-02 12_[+2(3.64e-05)]_67 chrXIV:102489-103602 8.50e-01 100 chrXIV:104576-105131 4.79e-11 1_[+2(9.55e-09)]_22_[-1(1.01e-09)]_\ 32 chrXIV:173975-174583 6.08e-01 100 chrXIV:241386-241748 1.14e-02 44_[-3(3.72e-05)]_41 chrXIV:283064-283667 8.07e-01 100 chrXIV:330348-331098 2.27e-01 100 chrXIV:374647-375097 4.62e-03 46_[+2(1.11e-06)]_33 chrXIV:392328-392706 9.83e-01 100 chrXIV:442735-444048 9.70e-01 100 chrXIV:444447-444954 4.26e-01 100 chrXIV:495182-495645 2.67e-03 13_[+3(1.02e-06)]_2_[+3(8.31e-05)]_\ 55 chrXIV:499285-499742 1.00e+00 100 chrXIV:499985-500719 8.31e-01 100 chrXIV:506949-507443 2.20e-01 100 chrXIV:546944-547413 2.70e-07 38_[-1(2.51e-10)]_38 chrXIV:560449-561226 5.38e-01 100 chrXIV:567891-568603 8.38e-01 100 chrXIV:569658-570157 1.04e-13 15_[+1(2.16e-11)]_23_[-2(3.02e-10)]_\ 17 chrXIV:575057-575763 7.59e-01 100 chrXIV:585524-586473 9.58e-01 100 chrXIV:602086-602530 2.11e-07 53_[+2(3.02e-10)]_26 chrXIV:619455-620031 7.09e-01 100 chrXIV:631552-632189 1.22e-13 31_[+1(4.21e-13)]_21_[-2(1.61e-07)]_\ 3 chrXIV:632382-632886 8.02e-10 14_[+2(2.07e-08)]_23_[-1(6.22e-09)]_\ 18 chrXIV:716085-717017 5.42e-01 100 chrXIV:725671-726415 9.85e-01 100 chrXIV:783480-784304 7.61e-03 22_[+3(4.67e-05)]_14_[+3(1.38e-05)]_\ 34 chrXV:7-976 7.81e-01 100 chrXV:79725-80138 1.25e-03 65_[+3(4.06e-07)]_20 chrXV:92334-93434 2.84e-01 100 chrXV:93752-94897 8.46e-01 100 chrXV:110254-110643 2.93e-01 100 chrXV:110850-111307 7.14e-01 100 chrXV:113474-114179 4.79e-11 25_[+2(9.55e-09)]_22_[-1(1.01e-09)]_\ 8 chrXV:161130-161395 2.06e-03 32_[+3(1.32e-06)]_53 chrXV:167932-168512 4.47e-03 14_[+3(2.11e-06)]_71 chrXV:216237-216702 3.62e-03 30_[-3(1.32e-06)]_9_[-3(2.71e-05)]_\ 31 chrXV:226385-227180 4.73e-02 100 chrXV:227643-228582 9.85e-01 100 chrXV:253801-254099 5.60e-03 76_[+3(1.64e-05)]_9 chrXV:274456-275012 1.44e-02 59_[-1(5.84e-05)]_17 chrXV:281682-282614 4.68e-06 33_[+3(3.44e-05)]_17_[+2(4.68e-08)]_\ 14 chrXV:287998-288367 6.25e-03 59_[+2(1.29e-06)]_20 chrXV:300709-301454 7.39e-06 65_[+2(4.07e-09)]_14 chrXV:340121-340750 9.88e-01 100 chrXV:353835-354799 7.81e-02 100 chrXV:438378-439522 9.35e-02 100 chrXV:464138-464962 1.67e-06 21_[-1(2.51e-10)]_55 chrXV:487194-487704 1.15e-04 39_[+2(2.07e-08)]_40 chrXV:505032-505498 3.30e-03 77_[-3(1.16e-05)]_8 chrXV:571600-572298 5.34e-02 58_[+2(6.51e-05)]_21 chrXV:594065-594709 1.38e-12 22_[+1(6.47e-10)]_21_[-2(1.24e-08)]_\ 12 chrXV:620991-622346 9.91e-01 100 chrXV:622708-623057 1.17e-01 100 chrXV:663539-664285 1.81e-05 2_[-2(2.19e-09)]_77 chrXV:678014-679206 5.17e-01 100 chrXV:709990-710493 1.66e-04 51_[-1(1.49e-07)]_25 chrXV:759169-759497 6.04e-01 100 chrXV:779694-780754 7.33e-01 100 chrXV:842446-843108 4.59e-01 100 chrXV:853947-854456 7.82e-08 41_[+1(6.00e-12)]_35 chrXV:866509-866969 9.67e-03 47_[-3(7.30e-06)]_38 chrXV:900649-901234 2.33e-01 100 chrXV:901482-901707 7.76e-01 100 chrXV:925214-925402 1.34e-02 100 chrXV:968171-968423 1.82e-02 20_[+3(5.45e-06)]_65 chrXV:976167-976748 3.30e-08 13_[+2(6.50e-07)]_22_[-1(1.17e-08)]_\ 20 chrXV:978852-979097 1.54e-02 12_[+3(1.64e-05)]_73 chrXV:979746-981290 5.95e-01 100 chrXV:1003925-1005000 1.00e+00 100 chrXV:1025695-1026256 9.53e-01 100 chrXV:1028627-1029500 9.83e-01 100 chrXVI:55780-56515 4.66e-01 100 chrXVI:76324-76727 5.82e-04 49_[-3(8.31e-05)]_2_[+3(2.57e-07)]_\ 19 chrXVI:172900-174094 6.02e-01 100 chrXVI:188597-188963 2.23e-03 58_[-3(1.49e-06)]_27 chrXVI:209685-210941 8.05e-01 100 chrXVI:280658-281865 1.80e-01 100 chrXVI:302531-302971 8.21e-01 100 chrXVI:338694-339286 2.65e-01 100 chrXVI:377935-378364 8.63e-01 100 chrXVI:378664-379019 1.73e-03 22_[+3(6.02e-06)]_10_[+3(7.90e-07)]_\ 38 chrXVI:404583-405518 2.70e-01 100 chrXVI:406202-407888 6.91e-01 100 chrXVI:435111-436259 6.33e-01 100 chrXVI:520108-520546 9.34e-03 54_[+3(2.50e-05)]_16_[-3(1.06e-05)] chrXVI:559997-560532 2.63e-03 54_[-2(2.09e-06)]_25 chrXVI:571896-572526 8.77e-01 100 chrXVI:581815-582469 6.67e-07 12_[-1(1.72e-10)]_64 chrXVI:622231-622894 2.12e-04 33_[+1(3.74e-08)]_43 chrXVI:689218-690679 2.87e-01 100 chrXVI:699899-700681 7.80e-03 18_[-3(3.62e-06)]_67 chrXVI:701892-702272 7.86e-01 100 chrXVI:718573-719326 1.95e-01 100 chrXVI:731640-732350 6.53e-01 100 chrXVI:743855-744707 3.99e-04 52_[+2(8.02e-08)]_27 chrXVI:768932-769514 8.74e-07 39_[+1(7.24e-10)]_37 chrXVI:775644-776825 6.50e-01 100 chrXVI:794445-794796 9.22e-04 65_[-3(2.11e-06)]_3_[-3(3.00e-07)]_\ 2 chrXVI:810456-810878 2.29e-05 58_[+2(2.07e-08)]_21 chrXVI:819007-819859 3.75e-01 100 chrXVI:856541-857081 4.34e-01 100 chrXVI:859950-860631 9.19e-01 100 chrXVI:866365-866773 3.15e-04 67_[+3(5.17e-08)]_18 chrXVI:879461-879747 4.16e-01 100 chrXVI:880001-880817 9.56e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************