******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MOT3/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:266166-266675 1.0000 100 chrVIII:34374-36296 1.0000 100 chrXIV:627736-629459 1.0000 100 chrVI:157631-158340 1.0000 100 chrXI:109252-110569 1.0000 100 chrI:141587-143707 1.0000 100 chrIV:1236369-1238600 1.0000 100 chrXVI:794486-796460 1.0000 100 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chrXV:832224-832858 1.0000 100 chrII:376108-378609 1.0000 100 chrI:166020-166660 1.0000 100 chrXVI:730856-731332 1.0000 100 chrIV:1359180-1361248 1.0000 100 chrIV:1492167-1493122 1.0000 100 chrXIV:442750-444784 1.0000 100 chrVII:919588-920205 1.0000 100 chrII:256207-257245 1.0000 100 chrXIII:253323-253639 1.0000 100 chrII:237669-238849 1.0000 100 chrV:250110-251448 1.0000 100 chrVIII:237466-238134 1.0000 100 chrX:204456-204556 1.0000 100 chrV:491046-491463 1.0000 100 chrIV:83335-83826 1.0000 100 chrVI:221739-222043 1.0000 100 chrVII:398332-401766 1.0000 100 chrXIV:96029-96589 1.0000 100 chrXII:867494-868798 1.0000 100 chrVII:535469-535790 1.0000 100 chrXIII:168602-169354 1.0000 100 chrXI:490731-491466 1.0000 100 chrVII:845377-845954 1.0000 100 chrXVI:404508-407873 1.0000 100 chrVII:986836-987651 1.0000 100 chrVIII:16830-17399 1.0000 100 chrV:117606-118292 1.0000 100 chrIV:358092-358412 1.0000 100 chrIX:248628-249407 1.0000 100 chrXV:6-997 1.0000 100 chrVI:210438-210917 1.0000 100 chrVIII:410748-412061 1.0000 100 chrIV:1080483-1080990 1.0000 100 chrVII:227461-228398 1.0000 100 chrII:167142-169718 1.0000 100 chrIX:254252-254523 1.0000 100 chrV:269072-270245 1.0000 100 chrXVI:520129-520521 1.0000 100 chrVIII:455650-456024 1.0000 100 chrII:45572-46708 1.0000 100 chrVIII:145935-146454 1.0000 100 chrIV:555343-556680 1.0000 100 chrII:332340-334288 1.0000 100 chrVIII:85109-85514 1.0000 100 chrXVI:689280-689881 1.0000 100 chrX:396565-396665 1.0000 100 chrXIII:5327-5764 1.0000 100 chrIV:1256888-1257301 1.0000 100 chrII:350582-351148 1.0000 100 chrXIII:849708-850674 1.0000 100 chrII:444772-445025 1.0000 100 chrXV:161130-161484 1.0000 100 chrV:487148-487669 1.0000 100 chrXV:841679-842980 1.0000 100 chrII:452856-453725 1.0000 100 chrX:651865-651965 1.0000 100 chrXV:258937-259979 1.0000 100 chrIII:292679-292970 1.0000 100 chrXIV:23831-26599 1.0000 100 chrXIV:88188-90021 1.0000 100 chrVIII:505828-506189 1.0000 100 chrVIII:358221-358764 1.0000 100 chrXII:460195-460696 1.0000 100 chrVII:706869-707334 1.0000 100 chrIV:220575-220753 1.0000 100 chrIX:213284-213731 1.0000 100 chrIX:322149-324610 1.0000 100 chrIII:168924-169254 1.0000 100 chrXIII:91690-92114 1.0000 100 chrII:197239-197871 1.0000 100 chrIV:915102-916708 1.0000 100 chrXV:287796-288414 1.0000 100 chrXII:262692-264325 1.0000 100 chrXVI:378661-378994 1.0000 100 chrXII:817346-820580 1.0000 100 chrXI:558662-559525 1.0000 100 chrXV:79461-80134 1.0000 100 chrX:390795-390895 1.0000 100 chrIV:1301534-1302955 1.0000 100 chrXII:546015-547961 1.0000 100 chrIV:437546-438040 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MOT3/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MOT3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MOT3/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.299 C 0.201 G 0.201 T 0.299 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MOT3/background): A 0.312 C 0.188 G 0.188 T 0.312 ******************************************************************************** ******************************************************************************** MOTIF GRTCMBSGGTTCGATYCCSSK MEME-1 width = 21 sites = 97 llr = 1691 E-value = 3.3e-344 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRTCMBSGGTTCGATYCCSSK MEME-1 Description -------------------------------------------------------------------------------- Simplified A 242:3:12::::2a2::::2: pos.-specific C 2:18544::::a::25a7541 probability G 66::1458a:::8:2:::545 matrix T 1:72121::aa:::55:2::3 bits 2.4 * * 2.2 * * * 1.9 * * * 1.7 * **** * Relative 1.4 * ****** * Entropy 1.2 * * ******* ** (25.1 bits) 1.0 * * ******** **** 0.7 ** * ********* ****** 0.5 ************** ****** 0.2 ************** ****** 0.0 --------------------- Multilevel GGTCCCGGGTTCGATTCCGGG consensus AATAGC C TCCT sequence T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCMBSGGTTCGATYCCSSK MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:631534-632136 - 69 5.94e-13 GGGTGCGGGA GGTCCCGGGTTCGAGTCCCGG CTCGCCCCCA chrVII:845377-845954 + 76 6.82e-12 GCCATCGTTG GGCCCCCGGTTCGATTCCGGG CTTG chrIV:83335-83826 + 60 6.82e-12 GCCATCGTTG GGCCCCCGGTTCGATTCCGGG CTTGCGCAAG chrVI:180692-181242 - 65 6.82e-12 GCCATCGTTG GGCCCCCGGTTCGATTCCGGG CTTGCGCAGT chrIV:992601-993156 + 46 6.82e-12 GCCATCGTTG GGCCCCCGGTTCGATTCCGGG CTTGCGCACT chrVII:930767-931199 - 28 6.82e-12 GCCATCGTTG GGCCCCCGGTTCGATTCCGGG CTTGCGCATT chrXVI:572016-572579 + 64 6.82e-12 GCCATCGTTG GGCCCCCGGTTCGATTCCGGG CTTGCGCAAT chrVI:162017-162492 + 66 6.82e-12 GCCATCGTTG GGCCCCCGGTTCGATTCCGGG CTTGCGCAGT chrII:197239-197871 + 34 7.12e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCT AGAGACCATT chrXIV:569660-570146 - 22 7.12e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCT AGAGACCATT chrV:442933-443518 - 35 7.12e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCT AGAGACCATA chrV:551069-551561 - 28 7.12e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCT AGAGACCAAT chrXIV:602101-602564 + 75 7.12e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCT AGAGA chrXII:734706-735037 + 26 7.12e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCT AGAGACCATT chrI:166020-166660 + 21 8.33e-11 GCAAGGAAGA GGTCATCGGTTCGATTCCGGT TGCGTCCAAA chrV:311753-312297 - 56 8.33e-11 GCAAGGAAGA GGTCATCGGTTCGATTCCGGT TGCGTCCAAT chrXII:214638-215158 - 43 8.33e-11 GCAAGGAAGA GGTCATCGGTTCGATTCCGGT TGCGTCCATT chrVIII:475474-475899 - 78 1.13e-10 AA GGTCCCGAGTTCGATCCTCGG TTGGAACATT chrVII:328310-329035 + 4 1.75e-10 TGG AGACCGGGGTTCGACTCCCCG TATCGGAGTT chrXIII:290538-291197 + 27 1.75e-10 TTCACCGTGG AGACCGGGGTTCGACTCCCCG TAGCGGAGTT chrIX:370220-370642 + 79 1.75e-10 TTCACCGTGG AGACCGGGGTTCGACTCCCCG T chrV:176889-177446 + 25 1.75e-10 TTCACCGTGG AGACCGGGGTTCGACTCCCCG TATCGGAGTA chrIV:1016907-1017508 - 58 1.75e-10 CTCACCGTGG AGACCGGGGTTCGACTCCCCG CTTCGGAGTT chrXVI:209912-210473 - 58 1.75e-10 TTCACCGTGG AGACCGGGGTTCGACTCCCCG TATCGGAGTT chrIX:197367-197985 + 9 1.75e-10 CACCGTGG AGACCGGGGTTCGACTCCCCG CTTCGGAGTT chrV:135148-135689 - 65 3.54e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrX:414775-414875 + 53 3.54e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTAA chrV:435567-436027 - 13 3.54e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrVI:226436-226949 - 54 3.54e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTTA chrVII:185411-185981 - 76 3.54e-10 ATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTAT chrXI:202832-203330 + 12 3.54e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrIV:1352261-1352725 - 31 3.54e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTAT chrVII:122070-122556 + 50 3.54e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTAT chrII:350582-351148 + 55 5.26e-10 TTGATCCGGA CAACCCCGGTTCGAATCCGGG TAAGACCTTA chrIV:802550-803018 - 5 5.26e-10 TTGATCCGGA CAACCCCGGTTCGAATCCGGG TAGG chrIV:520661-521437 + 16 5.26e-10 TTGATCCGGA CAACCCCGGTTCGAATCCGGG TAGGACCTTT chrIII:168089-168628 - 1 5.26e-10 TTGATCCGGA CAACCCCGGTTCGAATCCGGG chrV:130806-131407 - 34 5.26e-10 TTGATCCGAA CAACCCCGGTTCGAATCCGGG TAAGACCTAT chrIV:644950-645385 - 44 5.26e-10 TTGATCCGGA CAACCCCGGTTCGAATCCGGG TAGGACCTTT chrVIII:134064-134659 + 53 5.26e-10 TTGATCCGGA CAACCCCGGTTCGAATCCGGG TAGGACCTTT chrVII:779381-779915 + 61 6.81e-10 TCCAAGGTGG GGACACGGGTTCGATTCTCGT ACCGCTCAAG chrVIII:85109-85514 - 45 7.75e-10 ACACGCAGAA CGTCCCCAGTTCGATCCTGGG CGAAATCAAT chrXIII:372152-372717 - 69 7.75e-10 ACACGCAGAA CGTCCCCAGTTCGATCCTGGG CGAAATCATT chrXI:307909-308429 - 33 7.75e-10 ACACGCAGAA CGTCCCCAGTTCGATCCTGGG CGAAATCAAT chrXII:687663-688156 - 8 7.75e-10 ACACGCAGAA CGTCCCCAGTTCGATCCTGGG CGAAATC chrXV:663502-664103 - 68 7.75e-10 ACACGCAGAA CGTCCCCAGTTCGATCCTGGG CGAAATCGTT chrXV:594124-594677 - 12 7.75e-10 CCCAAGCATG AGGCCCGGGTTCGATTCCCGG CTTGCGCATC chrXI:379476-379980 + 47 7.75e-10 ACACGCAGAA CGTCCCCAGTTCGATCCTGGG CGAAATCAAT chrXIII:420261-420907 - 62 7.75e-10 ACACGCAGAA CGTCCCCAGTTCGATCCTGGG CGAAATCATT chrXIII:586405-586895 - 44 7.75e-10 ACACGCAGAA CGTCCCCAGTTCGATCCTGGG CGAAATCATT chrXV:438416-439008 + 48 1.12e-09 GATACCGAAA TGTCAGGGGTTCGAGCCCCCT ATGAGGAGTT chrXII:875188-875662 + 68 1.12e-09 GATACCGAAA TGTCAGGGGTTCGAGCCCCCT ATGAGGAGTT chrXI:578758-579401 + 3 1.12e-09 AA TGTCAGGGGTTCGAGCCCCCT ATGAGGAGTT chrXVI:768878-769495 - 79 1.12e-09 A TGTCAGGGGTTCGAGCCCCCT ATGAGGAGTT chrIV:488451-489169 - 45 1.26e-09 ACACGGCGAA GATCCCGAGTTCGAACCTCGG TTGGATCAGA chrXII:656696-657187 - 51 2.54e-09 GCATGGGAGA GGTCTCCGGTTCGATTCCGGA CTCGTCCAAG chrXVI:856766-857155 + 36 2.54e-09 GCATGGGAGA GGTCTCCGGTTCGATTCCGGA CTCGTCCATT chrXIII:320940-321324 - 73 2.54e-09 TGGGAGA GGTCTCCGGTTCGATTCCGGA CTCGTCCATT chrIV:410190-410755 + 1 2.54e-09 . GGTCTCCGGTTCGATTCCGGA CTCGTCCAAA chrXIV:546955-547399 + 41 2.54e-09 GCATGCGAGA GGCCCTGGGTTCAATTCCCAG CTCGCCCCGT chrX:355129-355229 + 32 8.13e-09 CTAATCAGAA GATTATGGGTTCGACCCCCAT CGTGAGTGCT chrXIII:131545-132111 - 55 8.13e-09 CTAATCAGAA GATTATGGGTTCGACCCCCAT CGTGAGTGCT chrXI:162288-162775 - 14 8.13e-09 CTAATCAGAA GATTATGGGTTCGACCCCCAT CGTGAGTGTT chrVII:405281-405756 + 45 8.13e-09 CTAATCAGAA GATTATGGGTTCGACCCCCAT CGTGAGTGCT chrX:374199-374299 - 36 8.13e-09 CTAATCAGAA GATTATGGGTTCGACCCCCAT CGTGAGTGCT chrXII:426902-427436 + 56 8.98e-09 GTCGCGTGCC AGATCGGGGTTCAATTCCCCG TCGCGGAGAA chrVII:531470-531810 + 63 8.98e-09 GTCGCGTGCC AGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrIV:568669-569297 + 74 8.98e-09 GTCGCGTGCC AGATCGGGGTTCAATTCCCCG TCGCGG chrXIII:463298-463913 + 42 8.98e-09 GTCGCGTGCC AGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrX:538346-538446 + 33 1.32e-08 CTAAGGAGAA GACTGCGGGTTCGAGTCCCGT ACGGAACGTT chrVII:706869-707334 - 65 2.31e-08 CAAATCTGTT GGTCCTTAGTTCGATCCTGAG TGCGAGCTTT chrXVI:435630-436202 - 35 2.31e-08 CAAATCTGTT GGTCCTTAGTTCGATCCTGAG TGCGAGCTTT chrIX:325549-326094 + 21 2.53e-08 GTAATGTGGA GATCATCGGTTCAAATCCGAT TGGAAGCAAT chrIX:174812-175357 + 41 2.53e-08 GTAATGTGGA GATCATCGGTTCAAATCCGAT TGGAAGCAAT chrXIV:104614-105135 + 25 2.53e-08 GTAATGTGGA GATCATCGGTTCAAATCCGAT TGGAAGCATA chrII:266166-266675 + 52 2.53e-08 GTAATGTGGA GATCATCGGTTCAAATCCGAT TGGAAGCATT chrVIII:358221-358764 - 44 5.05e-08 GTTATCTGGA GGTCCTGTGTTCGATCCACAG AATTCGCATA chrIV:1095137-1095702 - 9 5.05e-08 GATATCTGGA GGTCCTGTGTTCGATCCACAG AGTTCGCA chrXIII:352097-352542 + 73 5.05e-08 GTTATCTGGA GGTCCTGTGTTCGATCCACAG AATTCGC chrVII:700183-701264 + 55 1.89e-07 ATCTCTTCGG AGGCGCGGGTTCAAACCCCGC GGGTATCAAT chrXIII:362836-363414 + 32 2.69e-07 GTGGCCGATG AAACCCTGGTTCGATTCTAGG AGATGGCATT chrXI:313142-313679 - 49 2.69e-07 GTGGCCGATG AAACCCTGGTTCGATTCTAGG AGATGGCATT chrVII:110397-110914 - 28 2.69e-07 GTGGCCGATG AAACCCTGGTTCGATTCTAGG AGATGGCAAT chrXII:962627-963355 + 36 2.88e-07 AATACTGAAG GATGCGAGGTTCGAACTCGCG CGGACAACCG chrII:347401-347892 - 65 2.88e-07 ATTACTGAAG GATGCGAGGTTCGAACTCGCG CGGACAACCG chrXIV:725927-726399 + 26 2.88e-07 AATACTGAAG GATGCGAGGTTCGAACTCGCG CGGACAACCG chrV:492193-492573 - 27 3.08e-07 CGAACCAGAA GATTCCAGGTTCAAGTCCTGG CGGGGAAGGA chrVII:483289-483737 + 23 3.08e-07 ATTATCGCCG GATCTCCGCTTCGAGACCGGG TTTGTTTTCA chrX:390795-390895 - 43 3.77e-07 ATAATCTGAA GGTCGAGAGTTCGAACCTCCC CTGGAGCATA chrXV:709992-710487 + 55 4.90e-07 ATAACCCTGA TGTCCTCGGATCGAAACCGAG CGGCGCTAAT chrX:517644-517744 - 9 4.90e-07 ATAACCCTGA TGTCCTCGGATCGAAACCGAG CGGCGCTA chrXIII:837706-838275 + 48 5.23e-07 GAAATCTTGA GATCGGGCGTTCGACTCGCCC CCGGGAGATA chrVI:167274-167717 + 52 5.23e-07 GAAATCTTGA GATCGGGCGTTCGACTCGCCC CCGGGAGATA chrXIV:632401-632872 + 58 5.93e-07 TTAATCGCAA GATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrVII:730948-731462 + 27 5.93e-07 TTAATCGCAA GATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrXVI:810448-811045 + 25 5.93e-07 TTAATCGCAA GATCGTGAGTTCAACCCTCAC TGGGGTCGTA chrVII:287001-287800 - 8 5.93e-07 GCAATCGAAG GGTTGCAGGTTCAATTCCTGT CCGTTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCMBSGGTTCGATYCCSSK MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631534-632136 5.9e-13 68_[-1]_11 chrVII:845377-845954 6.8e-12 75_[+1]_4 chrIV:83335-83826 6.8e-12 59_[+1]_20 chrVI:180692-181242 6.8e-12 64_[-1]_15 chrIV:992601-993156 6.8e-12 45_[+1]_34 chrVII:930767-931199 6.8e-12 27_[-1]_52 chrXVI:572016-572579 6.8e-12 63_[+1]_16 chrVI:162017-162492 6.8e-12 65_[+1]_14 chrII:197239-197871 7.1e-11 33_[+1]_46 chrXIV:569660-570146 7.1e-11 21_[-1]_58 chrV:442933-443518 7.1e-11 34_[-1]_45 chrV:551069-551561 7.1e-11 27_[-1]_52 chrXIV:602101-602564 7.1e-11 74_[+1]_5 chrXII:734706-735037 7.1e-11 25_[+1]_54 chrI:166020-166660 8.3e-11 20_[+1]_59 chrV:311753-312297 8.3e-11 55_[-1]_24 chrXII:214638-215158 8.3e-11 42_[-1]_37 chrVIII:475474-475899 1.1e-10 77_[-1]_2 chrVII:328310-329035 1.8e-10 3_[+1]_76 chrXIII:290538-291197 1.8e-10 26_[+1]_53 chrIX:370220-370642 1.8e-10 78_[+1]_1 chrV:176889-177446 1.8e-10 24_[+1]_55 chrIV:1016907-1017508 1.8e-10 57_[-1]_22 chrXVI:209912-210473 1.8e-10 57_[-1]_22 chrIX:197367-197985 1.8e-10 8_[+1]_71 chrV:135148-135689 3.5e-10 64_[-1]_15 chrX:414775-414875 3.5e-10 52_[+1]_27 chrV:435567-436027 3.5e-10 12_[-1]_67 chrVI:226436-226949 3.5e-10 53_[-1]_26 chrVII:185411-185981 3.5e-10 75_[-1]_4 chrXI:202832-203330 3.5e-10 11_[+1]_68 chrIV:1352261-1352725 3.5e-10 30_[-1]_49 chrVII:122070-122556 3.5e-10 49_[+1]_30 chrII:350582-351148 5.3e-10 54_[+1]_25 chrIV:802550-803018 5.3e-10 4_[-1]_75 chrIV:520661-521437 5.3e-10 15_[+1]_64 chrIII:168089-168628 5.3e-10 [-1]_79 chrV:130806-131407 5.3e-10 33_[-1]_46 chrIV:644950-645385 5.3e-10 43_[-1]_36 chrVIII:134064-134659 5.3e-10 52_[+1]_27 chrVII:779381-779915 6.8e-10 60_[+1]_19 chrVIII:85109-85514 7.7e-10 44_[-1]_35 chrXIII:372152-372717 7.7e-10 68_[-1]_11 chrXI:307909-308429 7.7e-10 32_[-1]_47 chrXII:687663-688156 7.7e-10 7_[-1]_72 chrXV:663502-664103 7.7e-10 67_[-1]_12 chrXV:594124-594677 7.7e-10 11_[-1]_68 chrXI:379476-379980 7.7e-10 46_[+1]_33 chrXIII:420261-420907 7.7e-10 61_[-1]_18 chrXIII:586405-586895 7.7e-10 43_[-1]_36 chrXV:438416-439008 1.1e-09 47_[+1]_32 chrXII:875188-875662 1.1e-09 67_[+1]_12 chrXI:578758-579401 1.1e-09 2_[+1]_77 chrXVI:768878-769495 1.1e-09 78_[-1]_1 chrIV:488451-489169 1.3e-09 44_[-1]_35 chrXII:656696-657187 2.5e-09 50_[-1]_29 chrXVI:856766-857155 2.5e-09 35_[+1]_44 chrXIII:320940-321324 2.5e-09 72_[-1]_7 chrIV:410190-410755 2.5e-09 [+1]_79 chrXIV:546955-547399 2.5e-09 40_[+1]_39 chrX:355129-355229 8.1e-09 31_[+1]_48 chrXIII:131545-132111 8.1e-09 54_[-1]_25 chrXI:162288-162775 8.1e-09 13_[-1]_66 chrVII:405281-405756 8.1e-09 44_[+1]_35 chrX:374199-374299 8.1e-09 35_[-1]_44 chrXII:426902-427436 9e-09 55_[+1]_24 chrVII:531470-531810 9e-09 62_[+1]_17 chrIV:568669-569297 9e-09 73_[+1]_6 chrXIII:463298-463913 9e-09 41_[+1]_38 chrX:538346-538446 1.3e-08 32_[+1]_47 chrVII:706869-707334 2.3e-08 64_[-1]_15 chrXVI:435630-436202 2.3e-08 34_[-1]_45 chrIX:325549-326094 2.5e-08 20_[+1]_59 chrIX:174812-175357 2.5e-08 40_[+1]_39 chrXIV:104614-105135 2.5e-08 24_[+1]_55 chrII:266166-266675 2.5e-08 51_[+1]_28 chrVIII:358221-358764 5e-08 43_[-1]_36 chrIV:1095137-1095702 5e-08 8_[-1]_71 chrXIII:352097-352542 5e-08 72_[+1]_7 chrVII:700183-701264 1.9e-07 54_[+1]_25 chrXIII:362836-363414 2.7e-07 31_[+1]_48 chrXI:313142-313679 2.7e-07 48_[-1]_31 chrVII:110397-110914 2.7e-07 27_[-1]_52 chrXII:962627-963355 2.9e-07 35_[+1]_44 chrII:347401-347892 2.9e-07 64_[-1]_15 chrXIV:725927-726399 2.9e-07 25_[+1]_54 chrV:492193-492573 3.1e-07 26_[-1]_53 chrVII:483289-483737 3.1e-07 22_[+1]_57 chrX:390795-390895 3.8e-07 42_[-1]_37 chrXV:709992-710487 4.9e-07 54_[+1]_25 chrX:517644-517744 4.9e-07 8_[-1]_71 chrXIII:837706-838275 5.2e-07 47_[+1]_32 chrVI:167274-167717 5.2e-07 51_[+1]_28 chrXIV:632401-632872 5.9e-07 57_[+1]_22 chrVII:730948-731462 5.9e-07 26_[+1]_53 chrXVI:810448-811045 5.9e-07 24_[+1]_55 chrVII:287001-287800 5.9e-07 7_[-1]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCMBSGGTTCGATYCCSSK MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRTCMBSGGTTCGATYCCSSK width=21 seqs=97 chrXIV:631534-632136 ( 69) GGTCCCGGGTTCGAGTCCCGG 1 chrVII:845377-845954 ( 76) GGCCCCCGGTTCGATTCCGGG 1 chrIV:83335-83826 ( 60) GGCCCCCGGTTCGATTCCGGG 1 chrVI:180692-181242 ( 65) GGCCCCCGGTTCGATTCCGGG 1 chrIV:992601-993156 ( 46) GGCCCCCGGTTCGATTCCGGG 1 chrVII:930767-931199 ( 28) GGCCCCCGGTTCGATTCCGGG 1 chrXVI:572016-572579 ( 64) GGCCCCCGGTTCGATTCCGGG 1 chrVI:162017-162492 ( 66) GGCCCCCGGTTCGATTCCGGG 1 chrII:197239-197871 ( 34) GATCAGCGGTTCGATCCCGCT 1 chrXIV:569660-570146 ( 22) GATCAGCGGTTCGATCCCGCT 1 chrV:442933-443518 ( 35) GATCAGCGGTTCGATCCCGCT 1 chrV:551069-551561 ( 28) GATCAGCGGTTCGATCCCGCT 1 chrXIV:602101-602564 ( 75) GATCAGCGGTTCGATCCCGCT 1 chrXII:734706-735037 ( 26) GATCAGCGGTTCGATCCCGCT 1 chrI:166020-166660 ( 21) GGTCATCGGTTCGATTCCGGT 1 chrV:311753-312297 ( 56) GGTCATCGGTTCGATTCCGGT 1 chrXII:214638-215158 ( 43) GGTCATCGGTTCGATTCCGGT 1 chrVIII:475474-475899 ( 78) GGTCCCGAGTTCGATCCTCGG 1 chrVII:328310-329035 ( 4) AGACCGGGGTTCGACTCCCCG 1 chrXIII:290538-291197 ( 27) AGACCGGGGTTCGACTCCCCG 1 chrIX:370220-370642 ( 79) AGACCGGGGTTCGACTCCCCG 1 chrV:176889-177446 ( 25) AGACCGGGGTTCGACTCCCCG 1 chrIV:1016907-1017508 ( 58) AGACCGGGGTTCGACTCCCCG 1 chrXVI:209912-210473 ( 58) AGACCGGGGTTCGACTCCCCG 1 chrIX:197367-197985 ( 9) AGACCGGGGTTCGACTCCCCG 1 chrV:135148-135689 ( 65) GGTTAGGGGTTCGAGCCCCCT 1 chrX:414775-414875 ( 53) GGTTAGGGGTTCGAGCCCCCT 1 chrV:435567-436027 ( 13) GGTTAGGGGTTCGAGCCCCCT 1 chrVI:226436-226949 ( 54) GGTTAGGGGTTCGAGCCCCCT 1 chrVII:185411-185981 ( 76) GGTTAGGGGTTCGAGCCCCCT 1 chrXI:202832-203330 ( 12) GGTTAGGGGTTCGAGCCCCCT 1 chrIV:1352261-1352725 ( 31) GGTTAGGGGTTCGAGCCCCCT 1 chrVII:122070-122556 ( 50) GGTTAGGGGTTCGAGCCCCCT 1 chrII:350582-351148 ( 55) CAACCCCGGTTCGAATCCGGG 1 chrIV:802550-803018 ( 5) CAACCCCGGTTCGAATCCGGG 1 chrIV:520661-521437 ( 16) CAACCCCGGTTCGAATCCGGG 1 chrIII:168089-168628 ( 1) CAACCCCGGTTCGAATCCGGG 1 chrV:130806-131407 ( 34) CAACCCCGGTTCGAATCCGGG 1 chrIV:644950-645385 ( 44) CAACCCCGGTTCGAATCCGGG 1 chrVIII:134064-134659 ( 53) CAACCCCGGTTCGAATCCGGG 1 chrVII:779381-779915 ( 61) GGACACGGGTTCGATTCTCGT 1 chrVIII:85109-85514 ( 45) CGTCCCCAGTTCGATCCTGGG 1 chrXIII:372152-372717 ( 69) CGTCCCCAGTTCGATCCTGGG 1 chrXI:307909-308429 ( 33) CGTCCCCAGTTCGATCCTGGG 1 chrXII:687663-688156 ( 8) CGTCCCCAGTTCGATCCTGGG 1 chrXV:663502-664103 ( 68) CGTCCCCAGTTCGATCCTGGG 1 chrXV:594124-594677 ( 12) AGGCCCGGGTTCGATTCCCGG 1 chrXI:379476-379980 ( 47) CGTCCCCAGTTCGATCCTGGG 1 chrXIII:420261-420907 ( 62) CGTCCCCAGTTCGATCCTGGG 1 chrXIII:586405-586895 ( 44) CGTCCCCAGTTCGATCCTGGG 1 chrXV:438416-439008 ( 48) TGTCAGGGGTTCGAGCCCCCT 1 chrXII:875188-875662 ( 68) TGTCAGGGGTTCGAGCCCCCT 1 chrXI:578758-579401 ( 3) TGTCAGGGGTTCGAGCCCCCT 1 chrXVI:768878-769495 ( 79) TGTCAGGGGTTCGAGCCCCCT 1 chrIV:488451-489169 ( 45) GATCCCGAGTTCGAACCTCGG 1 chrXII:656696-657187 ( 51) GGTCTCCGGTTCGATTCCGGA 1 chrXVI:856766-857155 ( 36) GGTCTCCGGTTCGATTCCGGA 1 chrXIII:320940-321324 ( 73) GGTCTCCGGTTCGATTCCGGA 1 chrIV:410190-410755 ( 1) GGTCTCCGGTTCGATTCCGGA 1 chrXIV:546955-547399 ( 41) GGCCCTGGGTTCAATTCCCAG 1 chrX:355129-355229 ( 32) GATTATGGGTTCGACCCCCAT 1 chrXIII:131545-132111 ( 55) GATTATGGGTTCGACCCCCAT 1 chrXI:162288-162775 ( 14) GATTATGGGTTCGACCCCCAT 1 chrVII:405281-405756 ( 45) GATTATGGGTTCGACCCCCAT 1 chrX:374199-374299 ( 36) GATTATGGGTTCGACCCCCAT 1 chrXII:426902-427436 ( 56) AGATCGGGGTTCAATTCCCCG 1 chrVII:531470-531810 ( 63) AGATCGGGGTTCAATTCCCCG 1 chrIV:568669-569297 ( 74) AGATCGGGGTTCAATTCCCCG 1 chrXIII:463298-463913 ( 42) AGATCGGGGTTCAATTCCCCG 1 chrX:538346-538446 ( 33) GACTGCGGGTTCGAGTCCCGT 1 chrVII:706869-707334 ( 65) GGTCCTTAGTTCGATCCTGAG 1 chrXVI:435630-436202 ( 35) GGTCCTTAGTTCGATCCTGAG 1 chrIX:325549-326094 ( 21) GATCATCGGTTCAAATCCGAT 1 chrIX:174812-175357 ( 41) GATCATCGGTTCAAATCCGAT 1 chrXIV:104614-105135 ( 25) GATCATCGGTTCAAATCCGAT 1 chrII:266166-266675 ( 52) GATCATCGGTTCAAATCCGAT 1 chrVIII:358221-358764 ( 44) GGTCCTGTGTTCGATCCACAG 1 chrIV:1095137-1095702 ( 9) GGTCCTGTGTTCGATCCACAG 1 chrXIII:352097-352542 ( 73) GGTCCTGTGTTCGATCCACAG 1 chrVII:700183-701264 ( 55) AGGCGCGGGTTCAAACCCCGC 1 chrXIII:362836-363414 ( 32) AAACCCTGGTTCGATTCTAGG 1 chrXI:313142-313679 ( 49) AAACCCTGGTTCGATTCTAGG 1 chrVII:110397-110914 ( 28) AAACCCTGGTTCGATTCTAGG 1 chrXII:962627-963355 ( 36) GATGCGAGGTTCGAACTCGCG 1 chrII:347401-347892 ( 65) GATGCGAGGTTCGAACTCGCG 1 chrXIV:725927-726399 ( 26) GATGCGAGGTTCGAACTCGCG 1 chrV:492193-492573 ( 27) GATTCCAGGTTCAAGTCCTGG 1 chrVII:483289-483737 ( 23) GATCTCCGCTTCGAGACCGGG 1 chrX:390795-390895 ( 43) GGTCGAGAGTTCGAACCTCCC 1 chrXV:709992-710487 ( 55) TGTCCTCGGATCGAAACCGAG 1 chrX:517644-517744 ( 9) TGTCCTCGGATCGAAACCGAG 1 chrXIII:837706-838275 ( 48) GATCGGGCGTTCGACTCGCCC 1 chrVI:167274-167717 ( 52) GATCGGGCGTTCGACTCGCCC 1 chrXIV:632401-632872 ( 58) GATCGTGAGTTCAACCCTCAC 1 chrVII:730948-731462 ( 27) GATCGTGAGTTCAACCCTCAC 1 chrXVI:810448-811045 ( 25) GATCGTGAGTTCAACCCTCAC 1 chrVII:287001-287800 ( 8) GGTTGCAGGTTCAATTCCTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCMBSGGTTCGATYCCSSK MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 9.40703 E= 3.3e-344 -92 -28 172 -233 29 -1324 172 -1324 -46 -102 -319 108 -1324 202 -260 -60 3 151 -102 -260 -492 110 90 -40 -260 120 130 -260 -92 -319 206 -333 -1324 -419 240 -1324 -392 -1324 -1324 165 -1324 -1324 -1324 168 -1324 241 -1324 -1324 -101 -1324 217 -1324 168 -1324 -1324 -1324 -67 -10 -19 57 -333 133 -1324 67 -1324 237 -1324 -333 -333 198 -319 -60 -333 130 137 -392 -60 94 120 -1324 -292 -138 154 12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCMBSGGTTCGATYCCSSK MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 97 E= 3.3e-344 0.164948 0.154639 0.618557 0.061856 0.381443 0.000000 0.618557 0.000000 0.226804 0.092784 0.020619 0.659794 0.000000 0.762887 0.030928 0.206186 0.319588 0.536082 0.092784 0.051546 0.010309 0.402062 0.350515 0.237113 0.051546 0.432990 0.463918 0.051546 0.164948 0.020619 0.783505 0.030928 0.000000 0.010309 0.989691 0.000000 0.020619 0.000000 0.000000 0.979381 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.154639 0.000000 0.845361 0.000000 1.000000 0.000000 0.000000 0.000000 0.195876 0.175258 0.164948 0.463918 0.030928 0.474227 0.000000 0.494845 0.000000 0.969072 0.000000 0.030928 0.030928 0.742268 0.020619 0.206186 0.030928 0.463918 0.484536 0.020619 0.206186 0.360825 0.432990 0.000000 0.041237 0.072165 0.546392 0.340206 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCMBSGGTTCGATYCCSSK MEME-1 regular expression -------------------------------------------------------------------------------- G[GA][TA][CT][CA][CGT][GC]GGTTCGAT[TC]C[CT][GC][GCA][GT] -------------------------------------------------------------------------------- Time 352.73 secs. ******************************************************************************** ******************************************************************************** MOTIF GSBCNNKTGGYBYAGTGGKWA MEME-2 width = 21 sites = 85 llr = 1246 E-value = 4.5e-191 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSBCNNKTGGYBYAGTGGKWA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::1222:3::::a2::::37 pos.-specific C :53523::::644:::2::1: probability G 8542224:7a:31:8:6a411 matrix T 1:32334a::435::a2:652 bits 2.4 * * 2.2 * * 1.9 * * 1.7 * * *** * Relative 1.4 * * * *** * Entropy 1.2 * **** *** * (21.2 bits) 1.0 ** **** ***** 0.7 ** **** ****** 0.5 *** ************* * 0.2 **** *************** 0.0 --------------------- Multilevel GCGCTTGTGGCCTAGTGGTTA consensus GCTACT A TTC GAT sequence T G A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBCNNKTGGYBYAGTGGKWA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrVII:774114-774607 + 39 1.77e-10 TCAATTAATT GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrVI:204804-205200 - 24 1.77e-10 ACAAACGTTC GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrXI:219606-220131 + 77 1.77e-10 ACAGTAAATA GGGCGTGTGGCGTAGTCGGTA GCG chrX:197143-197243 - 40 1.77e-10 AATAATATTA GGGCGTGTGGCGTAGTCGGTA GCGCGCTCCC chrXII:605139-605658 - 64 1.01e-09 TTTCGAAAAT GCTCGTGTAGCTCAGTGGTTA GAGCTTCGTG chrXII:92314-92866 + 8 1.49e-09 TTAATAA GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrVI:101154-101673 + 13 1.49e-09 ACAATAATTC GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrI:138918-139391 + 48 1.49e-09 CAATTAGTAC GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrXV:464231-464726 + 22 1.49e-09 AAGTTAACAA GGGCGTGTGGTCTAGTGGTAT GATTCTCGCT chrXV:594124-594677 - 55 1.78e-09 TGATTGAAAC GCGCAAGTGGTTCAGTGGTTA GAATTTATGC chrXIV:96029-96589 - 33 3.59e-09 TCCAACACAT GGGCGGTTAGTGTAGTGGTTA TCATCCCACC chrVII:779381-779915 + 18 3.59e-09 AGTTAACCCC GGGCGGTTAGTGTAGTGGTTA TCATCCCACC chrIV:437546-438040 + 29 5.82e-09 TCATTAGTAA GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrXIII:258980-259479 - 40 5.82e-09 AAGTTAGTAT GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrX:523814-523914 - 52 5.82e-09 AGAGATTAAA GGCAACTTGGCCGAGTGGTTA AGGCGAAAGA chrX:396565-396665 - 38 6.79e-09 TCAAAAGTAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrVII:845377-845954 + 34 6.79e-09 TAAATAACAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrIV:83335-83826 + 18 6.79e-09 AGTTCACTTA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrXIII:183752-184175 - 35 6.79e-09 AATAAAGATC GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrIV:992601-993156 + 4 6.79e-09 TGA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrXII:1051904-1052384 - 30 6.79e-09 TCCTTTTCAT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrXVI:860096-860665 + 49 6.79e-09 TAAATAACAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrXIV:569660-570146 - 67 6.79e-09 AGATAACAGT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrV:442933-443518 - 80 6.79e-09 . GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrV:551069-551561 - 73 6.79e-09 GATTACA GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrXIV:602101-602564 + 30 6.79e-09 AGATAACAAT GGTCTCTTGGCCCAGTTGGTT AAGGCACCGT chrVII:930767-931199 - 70 6.79e-09 TAATCAGTAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrXVI:572016-572579 + 22 6.79e-09 ACAATACTTC GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrVI:162017-162492 + 24 6.79e-09 AAGAAAACAA GCGCAAGTGGTTTAGTGGTAA AATCCAACGT chrXVI:689280-689881 + 35 1.84e-08 GATTATTTTG GGCACTATGGCCGAGTGGTTA AGGCGACAGA chrX:617766-617866 + 9 1.84e-08 CAAACAAT GGGAGTTTGGCCGAGTGGTTT AAGGCGTCAG chrXVI:435630-436202 - 78 1.84e-08 AA GCTCGTATGGCGCAGTGGTAG CGCAGCAGAT chrV:288177-288783 - 74 1.84e-08 ATGATA GGCACTATGGCCGAGTGGTTA AGGCGACAGA chrIII:227700-228230 + 27 1.84e-08 AAATCGAAAT GGCACTATGGCCGAGTGGTTA AGGCGAGAGA chrII:642869-643281 - 33 1.84e-08 GTAATAGAAA GCTCGTATGGCGCAGTGGTAG CGCAGCAGAT chrXII:731890-732257 + 67 1.84e-08 AACATACAAT GGGAGTTTGGCCGAGTGGTTT AAGGCGTCAG chrIV:1256888-1257301 - 15 2.38e-08 GATCTTCTTA GCGAAAGTGGTTCAGTGGTTA GAATTCATGC chrIV:802550-803018 - 48 2.70e-08 ATGAATTGTC GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrIII:168089-168628 - 44 2.70e-08 AAGAAGTCCT GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrVIII:134064-134659 + 10 2.70e-08 GTAAGTTCC GGTCCTATAGTGTAGTGGTTA TCACTTTCGG chrXI:307909-308429 - 78 3.06e-08 GT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrXII:687663-688156 - 53 3.06e-08 ATAAATAATA GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrV:469264-469677 + 37 3.06e-08 AGAAATAATT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrVII:823262-823713 + 45 3.06e-08 CAATAAGAGT GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrX:378107-378207 + 63 3.06e-08 TAAATTAATA GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrXI:379476-379980 + 2 3.06e-08 A GGTTTCGTGGTCTAGTCGGTT ATGGCATCTG chrXII:784144-784556 + 54 3.06e-08 TTGTTCAACC GTCCCAGTGGCCGAGTGGTTA AGGCGATGCC chrXI:162288-162775 - 57 8.52e-08 ACAAATATTA GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrVII:405281-405756 + 2 8.52e-08 A GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrX:374199-374299 - 79 8.52e-08 A GCTCGCGTGGCGTAATGGCAA CGCGTCTGAC chrII:350582-351148 + 12 9.46e-08 TCAATAAAAG GGTTTTATAGTGTAGTGGTTA TCACTTTCGG chrX:414775-414875 + 9 9.46e-08 ACGAATTA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrV:435567-436027 - 57 9.46e-08 AACAATAAGA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrVII:661521-661942 + 68 9.46e-08 GTAAAAATTT GCCTCCTTAGCTTAGTGGTAG AGCGTTGCAC chrVII:1004025-1004420 + 44 9.46e-08 TCAAGGGTTT GCCTCCTTAGCTTAGTGGTAG AGCGTTGCAC chrV:130806-131407 - 77 9.46e-08 AGA GGTTTTATAGTGTAGTGGTTA TCACTTTCGG chrIV:1352261-1352725 - 75 9.46e-08 AAATA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrVII:122070-122556 + 6 9.46e-08 AATTA GCCTTGTTGGCGCAATCGGTA GCGCGTATGA chrIV:1095137-1095702 - 72 1.72e-07 TTATGTTA GCGGACTTAGCTCAGTTGGGA GAGCGCCAGA chrXIV:374678-375110 + 25 1.72e-07 AGAAAAATAA GCGGACTTAGCTCAGTTGGGA GAGCGCCAGA chrXVI:622347-622874 - 51 2.48e-07 ATTCTGATAT GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrXIII:352097-352542 + 11 2.48e-07 ATGAATATAA GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrII:36178-36590 + 64 2.48e-07 TTAGTTGTAA GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrXVI:560050-560495 - 47 2.48e-07 TAGAAATTGA GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrVI:157631-158340 - 52 2.48e-07 ATAAATAGAA GCGGATTTAGCTCAGTTGGGA GAGCGCCAGA chrII:326576-327143 - 36 3.23e-07 TCGAGTTCCG GGTCCAATGGTCCAGTGGTTC AAGACGTCGC chrIV:359352-359846 + 28 6.22e-07 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTA GAGCGTTCGG chrXII:875188-875662 + 1 6.22e-07 . TCCTTGTTAGCTCAGTTGGTA GAGCGTTCGG chrVII:115239-115769 + 34 6.22e-07 GAAGAACTCA TCCTTGTTAGCTCAGTTGGTA GAGCGTTCGG chrXV:340117-340601 - 42 7.25e-07 TCAAGATCTG TTCCTCGTGGCCCAATGGTCA CGGCGTCTGG chrV:492193-492573 - 71 7.25e-07 AACATCCTA TTCCTCGTGGCCCAATGGTCA CGGCGTCTGG chrVII:110397-110914 - 71 7.25e-07 TAATTACCT GCCATCTTAGTATAGTGGTTA GTACACATCG chrXII:489293-489574 + 36 9.07e-07 GTAAGAGCCT GACCGAGTAGTGTAGTGGGTG ACCATACGCG chrII:347401-347892 + 7 9.07e-07 TTATAC GGAGGGTTGGCCGAGTGGTCT AAGGCGGCAG chrII:266166-266675 + 8 1.12e-06 AAAAACT GCTTCTATGGCCAAGTTGGTA AGGCGCCACA chrVII:700183-701264 + 2 1.48e-06 T GGTACTCTGGCCGAGTGGTCT AAGGCGTCAG chrXV:709992-710487 + 12 1.80e-06 AAGAATTAGC AGCGCCGTGGCGCAGTGGAAG CGCGCAGGGC chrV:99854-100406 + 53 1.80e-06 AAGTTGGCTA AGCGCCGTGGCGCAGTGGAAG CGCGCAGGGC chrX:517644-517744 - 52 1.80e-06 ATAAAAGTTA AGCGCCGTGGCGCAGTGGAAG CGCGCAGGGC chrXV:989032-989543 - 17 3.47e-06 TAGCTATGAC GTTTGGGTGGCCTAGCCGGTT CGCGTGTGCC chrX:204456-204556 + 59 3.88e-06 AACATAAAAA TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrX:355129-355229 + 71 3.88e-06 CTTTGTTTCT TCCGTGATAGTTTAATGGTCA GAATGGGCG chrXII:426902-427436 + 13 3.88e-06 GTGTTTCTTA TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrVII:531470-531810 + 20 3.88e-06 TCGAGTTACT TCCGTGATAGTTTAATGGTCA GAATGGGCGC chrIV:568669-569297 + 31 3.88e-06 CTTTGTTTCT TCCGTGATAGTTTAATGGTCA GAATGGGCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBCNNKTGGYBYAGTGGKWA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:774114-774607 1.8e-10 38_[+2]_41 chrVI:204804-205200 1.8e-10 23_[-2]_56 chrXI:219606-220131 1.8e-10 76_[+2]_3 chrX:197143-197243 1.8e-10 39_[-2]_40 chrXII:605139-605658 1e-09 63_[-2]_16 chrXII:92314-92866 1.5e-09 7_[+2]_72 chrVI:101154-101673 1.5e-09 12_[+2]_67 chrI:138918-139391 1.5e-09 47_[+2]_32 chrXV:464231-464726 1.5e-09 21_[+2]_58 chrXV:594124-594677 1.8e-09 54_[-2]_25 chrXIV:96029-96589 3.6e-09 32_[-2]_47 chrVII:779381-779915 3.6e-09 17_[+2]_62 chrIV:437546-438040 5.8e-09 28_[+2]_51 chrXIII:258980-259479 5.8e-09 39_[-2]_40 chrX:523814-523914 5.8e-09 51_[-2]_28 chrX:396565-396665 6.8e-09 37_[-2]_42 chrVII:845377-845954 6.8e-09 33_[+2]_46 chrIV:83335-83826 6.8e-09 17_[+2]_62 chrXIII:183752-184175 6.8e-09 34_[-2]_45 chrIV:992601-993156 6.8e-09 3_[+2]_76 chrXII:1051904-1052384 6.8e-09 29_[-2]_50 chrXVI:860096-860665 6.8e-09 48_[+2]_31 chrXIV:569660-570146 6.8e-09 66_[-2]_13 chrV:442933-443518 6.8e-09 79_[-2] chrV:551069-551561 6.8e-09 72_[-2]_7 chrXIV:602101-602564 6.8e-09 29_[+2]_50 chrVII:930767-931199 6.8e-09 69_[-2]_10 chrXVI:572016-572579 6.8e-09 21_[+2]_58 chrVI:162017-162492 6.8e-09 23_[+2]_56 chrXVI:689280-689881 1.8e-08 34_[+2]_45 chrX:617766-617866 1.8e-08 8_[+2]_71 chrXVI:435630-436202 1.8e-08 77_[-2]_2 chrV:288177-288783 1.8e-08 73_[-2]_6 chrIII:227700-228230 1.8e-08 26_[+2]_53 chrII:642869-643281 1.8e-08 32_[-2]_47 chrXII:731890-732257 1.8e-08 66_[+2]_13 chrIV:1256888-1257301 2.4e-08 14_[-2]_65 chrIV:802550-803018 2.7e-08 47_[-2]_32 chrIII:168089-168628 2.7e-08 43_[-2]_36 chrVIII:134064-134659 2.7e-08 9_[+2]_70 chrXI:307909-308429 3.1e-08 77_[-2]_2 chrXII:687663-688156 3.1e-08 52_[-2]_27 chrV:469264-469677 3.1e-08 36_[+2]_43 chrVII:823262-823713 3.1e-08 44_[+2]_35 chrX:378107-378207 3.1e-08 62_[+2]_17 chrXI:379476-379980 3.1e-08 1_[+2]_78 chrXII:784144-784556 3.1e-08 53_[+2]_26 chrXI:162288-162775 8.5e-08 56_[-2]_23 chrVII:405281-405756 8.5e-08 1_[+2]_78 chrX:374199-374299 8.5e-08 78_[-2]_1 chrII:350582-351148 9.5e-08 11_[+2]_68 chrX:414775-414875 9.5e-08 8_[+2]_71 chrV:435567-436027 9.5e-08 56_[-2]_23 chrVII:661521-661942 9.5e-08 67_[+2]_12 chrVII:1004025-1004420 9.5e-08 43_[+2]_36 chrV:130806-131407 9.5e-08 76_[-2]_3 chrIV:1352261-1352725 9.5e-08 74_[-2]_5 chrVII:122070-122556 9.5e-08 5_[+2]_74 chrIV:1095137-1095702 1.7e-07 71_[-2]_8 chrXIV:374678-375110 1.7e-07 24_[+2]_55 chrXVI:622347-622874 2.5e-07 50_[-2]_29 chrXIII:352097-352542 2.5e-07 10_[+2]_69 chrII:36178-36590 2.5e-07 63_[+2]_16 chrXVI:560050-560495 2.5e-07 46_[-2]_33 chrVI:157631-158340 2.5e-07 51_[-2]_28 chrII:326576-327143 3.2e-07 35_[-2]_44 chrIV:359352-359846 6.2e-07 27_[+2]_52 chrXII:875188-875662 6.2e-07 [+2]_79 chrVII:115239-115769 6.2e-07 33_[+2]_46 chrXV:340117-340601 7.3e-07 41_[-2]_38 chrV:492193-492573 7.3e-07 70_[-2]_9 chrVII:110397-110914 7.3e-07 70_[-2]_9 chrXII:489293-489574 9.1e-07 35_[+2]_44 chrII:347401-347892 9.1e-07 6_[+2]_73 chrII:266166-266675 1.1e-06 7_[+2]_72 chrVII:700183-701264 1.5e-06 1_[+2]_78 chrXV:709992-710487 1.8e-06 11_[+2]_68 chrV:99854-100406 1.8e-06 52_[+2]_27 chrX:517644-517744 1.8e-06 51_[-2]_28 chrXV:989032-989543 3.5e-06 16_[-2]_63 chrX:204456-204556 3.9e-06 58_[+2]_21 chrX:355129-355229 3.9e-06 70_[+2]_9 chrXII:426902-427436 3.9e-06 12_[+2]_67 chrVII:531470-531810 3.9e-06 19_[+2]_60 chrIV:568669-569297 3.9e-06 30_[+2]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBCNNKTGGYBYAGTGGKWA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSBCNNKTGGYBYAGTGGKWA width=21 seqs=85 chrVII:774114-774607 ( 39) GGGCGTGTGGCGTAGTCGGTA 1 chrVI:204804-205200 ( 24) GGGCGTGTGGCGTAGTCGGTA 1 chrXI:219606-220131 ( 77) GGGCGTGTGGCGTAGTCGGTA 1 chrX:197143-197243 ( 40) GGGCGTGTGGCGTAGTCGGTA 1 chrXII:605139-605658 ( 64) GCTCGTGTAGCTCAGTGGTTA 1 chrXII:92314-92866 ( 8) GGGCGTGTGGTCTAGTGGTAT 1 chrVI:101154-101673 ( 13) GGGCGTGTGGTCTAGTGGTAT 1 chrI:138918-139391 ( 48) GGGCGTGTGGTCTAGTGGTAT 1 chrXV:464231-464726 ( 22) GGGCGTGTGGTCTAGTGGTAT 1 chrXV:594124-594677 ( 55) GCGCAAGTGGTTCAGTGGTTA 1 chrXIV:96029-96589 ( 33) GGGCGGTTAGTGTAGTGGTTA 1 chrVII:779381-779915 ( 18) GGGCGGTTAGTGTAGTGGTTA 1 chrIV:437546-438040 ( 29) GGCAACTTGGCCGAGTGGTTA 1 chrXIII:258980-259479 ( 40) GGCAACTTGGCCGAGTGGTTA 1 chrX:523814-523914 ( 52) GGCAACTTGGCCGAGTGGTTA 1 chrX:396565-396665 ( 38) GCGCAAGTGGTTTAGTGGTAA 1 chrVII:845377-845954 ( 34) GCGCAAGTGGTTTAGTGGTAA 1 chrIV:83335-83826 ( 18) GCGCAAGTGGTTTAGTGGTAA 1 chrXIII:183752-184175 ( 35) GCGCAAGTGGTTTAGTGGTAA 1 chrIV:992601-993156 ( 4) GCGCAAGTGGTTTAGTGGTAA 1 chrXII:1051904-1052384 ( 30) GGTCTCTTGGCCCAGTTGGTT 1 chrXVI:860096-860665 ( 49) GCGCAAGTGGTTTAGTGGTAA 1 chrXIV:569660-570146 ( 67) GGTCTCTTGGCCCAGTTGGTT 1 chrV:442933-443518 ( 80) GGTCTCTTGGCCCAGTTGGTT 1 chrV:551069-551561 ( 73) GGTCTCTTGGCCCAGTTGGTT 1 chrXIV:602101-602564 ( 30) GGTCTCTTGGCCCAGTTGGTT 1 chrVII:930767-931199 ( 70) GCGCAAGTGGTTTAGTGGTAA 1 chrXVI:572016-572579 ( 22) GCGCAAGTGGTTTAGTGGTAA 1 chrVI:162017-162492 ( 24) GCGCAAGTGGTTTAGTGGTAA 1 chrXVI:689280-689881 ( 35) GGCACTATGGCCGAGTGGTTA 1 chrX:617766-617866 ( 9) GGGAGTTTGGCCGAGTGGTTT 1 chrXVI:435630-436202 ( 78) GCTCGTATGGCGCAGTGGTAG 1 chrV:288177-288783 ( 74) GGCACTATGGCCGAGTGGTTA 1 chrIII:227700-228230 ( 27) GGCACTATGGCCGAGTGGTTA 1 chrII:642869-643281 ( 33) GCTCGTATGGCGCAGTGGTAG 1 chrXII:731890-732257 ( 67) GGGAGTTTGGCCGAGTGGTTT 1 chrIV:1256888-1257301 ( 15) GCGAAAGTGGTTCAGTGGTTA 1 chrIV:802550-803018 ( 48) GGTCCTATAGTGTAGTGGTTA 1 chrIII:168089-168628 ( 44) GGTCCTATAGTGTAGTGGTTA 1 chrVIII:134064-134659 ( 10) GGTCCTATAGTGTAGTGGTTA 1 chrXI:307909-308429 ( 78) GGTTTCGTGGTCTAGTCGGTT 1 chrXII:687663-688156 ( 53) GGTTTCGTGGTCTAGTCGGTT 1 chrV:469264-469677 ( 37) GGTTTCGTGGTCTAGTCGGTT 1 chrVII:823262-823713 ( 45) GGTTTCGTGGTCTAGTCGGTT 1 chrX:378107-378207 ( 63) GGTTTCGTGGTCTAGTCGGTT 1 chrXI:379476-379980 ( 2) GGTTTCGTGGTCTAGTCGGTT 1 chrXII:784144-784556 ( 54) GTCCCAGTGGCCGAGTGGTTA 1 chrXI:162288-162775 ( 57) GCTCGCGTGGCGTAATGGCAA 1 chrVII:405281-405756 ( 2) GCTCGCGTGGCGTAATGGCAA 1 chrX:374199-374299 ( 79) GCTCGCGTGGCGTAATGGCAA 1 chrII:350582-351148 ( 12) GGTTTTATAGTGTAGTGGTTA 1 chrX:414775-414875 ( 9) GCCTTGTTGGCGCAATCGGTA 1 chrV:435567-436027 ( 57) GCCTTGTTGGCGCAATCGGTA 1 chrVII:661521-661942 ( 68) GCCTCCTTAGCTTAGTGGTAG 1 chrVII:1004025-1004420 ( 44) GCCTCCTTAGCTTAGTGGTAG 1 chrV:130806-131407 ( 77) GGTTTTATAGTGTAGTGGTTA 1 chrIV:1352261-1352725 ( 75) GCCTTGTTGGCGCAATCGGTA 1 chrVII:122070-122556 ( 6) GCCTTGTTGGCGCAATCGGTA 1 chrIV:1095137-1095702 ( 72) GCGGACTTAGCTCAGTTGGGA 1 chrXIV:374678-375110 ( 25) GCGGACTTAGCTCAGTTGGGA 1 chrXVI:622347-622874 ( 51) GCGGATTTAGCTCAGTTGGGA 1 chrXIII:352097-352542 ( 11) GCGGATTTAGCTCAGTTGGGA 1 chrII:36178-36590 ( 64) GCGGATTTAGCTCAGTTGGGA 1 chrXVI:560050-560495 ( 47) GCGGATTTAGCTCAGTTGGGA 1 chrVI:157631-158340 ( 52) GCGGATTTAGCTCAGTTGGGA 1 chrII:326576-327143 ( 36) GGTCCAATGGTCCAGTGGTTC 1 chrIV:359352-359846 ( 28) TCCTTGTTAGCTCAGTTGGTA 1 chrXII:875188-875662 ( 1) TCCTTGTTAGCTCAGTTGGTA 1 chrVII:115239-115769 ( 34) TCCTTGTTAGCTCAGTTGGTA 1 chrXV:340117-340601 ( 42) TTCCTCGTGGCCCAATGGTCA 1 chrV:492193-492573 ( 71) TTCCTCGTGGCCCAATGGTCA 1 chrVII:110397-110914 ( 71) GCCATCTTAGTATAGTGGTTA 1 chrXII:489293-489574 ( 36) GACCGAGTAGTGTAGTGGGTG 1 chrII:347401-347892 ( 7) GGAGGGTTGGCCGAGTGGTCT 1 chrII:266166-266675 ( 8) GCTTCTATGGCCAAGTTGGTA 1 chrVII:700183-701264 ( 2) GGTACTCTGGCCGAGTGGTCT 1 chrXV:709992-710487 ( 12) AGCGCCGTGGCGCAGTGGAAG 1 chrV:99854-100406 ( 53) AGCGCCGTGGCGCAGTGGAAG 1 chrX:517644-517744 ( 52) AGCGCCGTGGCGCAGTGGAAG 1 chrXV:989032-989543 ( 17) GTTTGGGTGGCCTAGCCGGTT 1 chrX:204456-204556 ( 59) TCCGTGATAGTTTAATGGTCA 1 chrX:355129-355229 ( 71) TCCGTGATAGTTTAATGGTCA 1 chrXII:426902-427436 ( 13) TCCGTGATAGTTTAATGGTCA 1 chrVII:531470-531810 ( 20) TCCGTGATAGTTTAATGGTCA 1 chrIV:568669-569297 ( 31) TCCGTGATAGTTTAATGGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBCNNKTGGYBYAGTGGKWA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 8.64749 E= 4.5e-191 -314 -1305 217 -141 -472 132 132 -273 -472 81 91 -3 -127 129 0 -48 -34 -9 39 8 -92 76 0 8 -64 -400 121 18 -1305 -1305 -1305 168 3 -1305 186 -1305 -1305 -1305 241 -1305 -1305 162 -1305 44 -472 96 59 13 -472 91 -54 70 168 -1305 -1305 -1305 -92 -1305 215 -1305 -1305 -400 -1305 166 -1305 -9 176 -73 -1305 -1305 241 -1305 -314 -241 100 83 -21 -83 -119 79 108 -400 -100 -41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBCNNKTGGYBYAGTGGKWA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 85 E= 4.5e-191 0.035294 0.000000 0.847059 0.117647 0.011765 0.470588 0.470588 0.047059 0.011765 0.329412 0.352941 0.305882 0.129412 0.458824 0.188235 0.223529 0.247059 0.176471 0.247059 0.329412 0.164706 0.317647 0.188235 0.329412 0.200000 0.011765 0.435294 0.352941 0.000000 0.000000 0.000000 1.000000 0.317647 0.000000 0.682353 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.576471 0.000000 0.423529 0.011765 0.364706 0.282353 0.341176 0.011765 0.352941 0.129412 0.505882 1.000000 0.000000 0.000000 0.000000 0.164706 0.000000 0.835294 0.000000 0.000000 0.011765 0.000000 0.988235 0.000000 0.176471 0.635294 0.188235 0.000000 0.000000 1.000000 0.000000 0.035294 0.035294 0.376471 0.552941 0.270588 0.105882 0.082353 0.541176 0.658824 0.011765 0.094118 0.235294 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBCNNKTGGYBYAGTGGKWA MEME-2 regular expression -------------------------------------------------------------------------------- G[CG][GCT][CT][TAG][TC][GTA]T[GA]G[CT][CTG][TC]AGTGG[TG][TA][AT] -------------------------------------------------------------------------------- Time 672.40 secs. ******************************************************************************** ******************************************************************************** MOTIF RARAAAAAAARAAWAWDRAAA MEME-3 width = 21 sites = 93 llr = 1016 E-value = 8.8e-065 ******************************************************************************** -------------------------------------------------------------------------------- Motif RARAAAAAAARAAWAWDRAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 5859889998588484446a6 pos.-specific C 21:::1::::::1::2121:: probability G 214111:::232:122351:2 matrix T 1:11:111::2::4:23:1:1 bits 2.4 2.2 1.9 1.7 Relative 1.4 * Entropy 1.2 * * * * (15.8 bits) 1.0 * * **** ** * * 0.7 * ******* ** * * * 0.5 ************ * * ** 0.2 *************** ***** 0.0 --------------------- Multilevel AAAAAAAAAAAAAAAAAGAAA consensus G G G T TTA G sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARAAAAAAARAAWAWDRAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXII:459643-459979 - 39 1.45e-10 AAAAAAAAAA AAAAAAAAAAAAAAAAAGAAA TAAAGATTGC chrIII:228752-229220 - 23 4.21e-10 TCTTTGTTCC GAAAAAAAAAAAAAACGGAAA AATATATTTT chrX:58644-58744 + 75 1.43e-09 CAAGAGCGTG AAAAAAAAAAAAAAAAAAAAA TTAAT chrXII:167686-168249 + 1 1.84e-09 . AAAAAAAAAAGAAAAAGAAAA AATAACGACA chrII:478926-479574 + 72 3.76e-09 TTACTCGAAA CAAAAAAAAAAAAAATGGAAA AAGCTGCT chrIV:1201465-1202907 + 41 7.23e-09 ATAGATTTAA CAAAAAAAAAAAATGAGGAAA TAAATAAGAA chrXII:704295-704585 - 57 8.92e-09 GATGGAGGAG AAAAGAAAAAAAAAAATGAAA AAAAAAGTGT chrVIII:85109-85514 + 10 1.08e-08 ATTTTTCTA AAGAAAAAAAAAAAATTCAAA AAAAATTGAT chrVII:363826-364469 - 45 1.87e-08 AACCTATATA ACGAAAAAAAAAAAAATGAAA ACTGAAGATA chrV:303888-307731 - 35 1.87e-08 AATATCACCA AAAAAAAAAAAAAAAGTAAAG AAGGTAATTT chrV:100724-102720 - 10 2.64e-08 AGGAAAAATG AAAAGAAAAAGAAAATAGAAA TGAAAAATT chrXI:393422-393660 + 4 3.13e-08 AAG AAAAGAAAAAGAAAAGTGAAA AAAATAAACC chrVIII:562267-562574 - 5 3.69e-08 CCGAAATTAA AAAAAAAAAATGAAAATGAAA CCCT chrXII:7-285 + 39 3.69e-08 GACCGAAATT AAAAAAAAAATGAAAATGAAA CCCTGTTCTT chrX:607863-607963 - 8 4.35e-08 AGCCCTGCAA AAAAAAAAAATAAGATGGAAA TATTTGT chrIX:197367-197985 - 40 5.96e-08 AATAGTCCCT AAAAAAAAAAGAATAAAAAAT AACTCCGAAG chrXI:67798-68420 + 41 1.09e-07 CAGTGGCAAA AAAAAAATAAAAATATAGAAA ATAACTATTA chrXII:962627-963355 + 15 1.09e-07 GCGCCGTCAA AATAAAAAAAAAATACTGAAG GATGCGAGGT chrXII:489293-489574 - 78 1.44e-07 CG GAAAAAAAAAAAAGATTGCAG CACCTGAGTT chrV:511924-512393 - 56 1.66e-07 ACTAGTATTT AAGACAAAAAAAAAAGGGAAG GGAGAAAAAA chrXIII:625850-627042 - 53 1.91e-07 ATTATTCTCC GGGAAAAAAAGAAGAAACAAA GAGATCCCGA chrVI:221739-222043 + 35 2.84e-07 CATCATTTTC GAAAAAAAAAGAAAGTTGGAG CCGGAAAGGA chrXIII:362836-363414 + 75 2.84e-07 CTTTTTTTTT CAAAGAAAAGAAAAAGGGAAG GCAAC chrXIV:725927-726399 + 5 2.84e-07 GACA AAATAAAAAAAAATACTGAAG GATGCGAGGT chrX:663394-663494 - 22 3.68e-07 AACATAACTA AAAAAAAAAAGAAAAAAAATA TAGTCATCTT chrVII:609251-610135 + 78 4.72e-07 CAGACCGAGG GAGAAAAAAAAAAGGAACTAA AA chrIV:1239323-1240154 + 69 4.72e-07 GATGCTGCTG AAGAAGAAAAGGAAGAAGAAG CTAAGGAAGA chrX:538346-538446 - 61 4.72e-07 ATAAAGAAAC GAAAAAAAAAAAATAATCAAC GTTCCGTACG chrIV:1305377-1306129 - 56 4.72e-07 TTACACCTTT TAAAGAAAAAAACAAAAGAAA TTGACTGACA chrVII:436704-438434 - 58 7.65e-07 AAGGCCAACA AAGAAAAGAAGAAGGCTGAAA AGGCTGCTAG chrXII:793700-797408 + 16 7.65e-07 ATATGATTAA ACAAAAAAAAGAAGAAGACAA ACAACTTATT chrVII:930767-931199 + 7 7.65e-07 AAAAAA GAAAAGAAAAAAATGCGCAAG CCCGGAATCG chrXV:1003890-1006328 + 14 8.60e-07 TATTTTAGAA AAGGACAAAAAAATACGAAAA AAGACAAAAA chrIII:78334-78764 + 9 1.21e-06 TGCCGGTC AAGGAAAAAAAGAAACCAAAA AAAAATGCCG chrXII:281310-283924 + 35 1.21e-06 CCGCAGGATA TAGAAAAAAAAGAAATGAAAT TATAGTAGCG chrIV:339195-341891 + 62 1.35e-06 AAAAGAAGTG GAAAGAAAAGGAAAGAAGTAA TCAAAGTAAC chrVII:535469-535790 - 73 1.68e-06 ACAGTAA AAGAAAATAAAAATAACGTAA TATTAGAAAT chrIV:520661-521437 - 61 1.88e-06 TCAAAGCCAA GAAAGAAAAATAAAACAAGAG GGTTAAAAAA chrVIII:466733-467526 - 3 2.09e-06 ATAAATGATA GAGAAATAAGAACAAAGGGAA AA chrXV:505682-507020 - 8 2.32e-06 TCTATAAAAG AAGGAAAACAAAAAAGGAAAA TGTTAGT chrV:18599-19286 + 71 2.32e-06 CAGGGCGTTT GAGAAATAAGGGATATGGCAA AAATCGAAA chrVI:147979-148924 + 31 3.15e-06 CTAAATACTC CAAGAAAAAGAACAACAAAAA TAAGTAAAAT chrX:223851-223951 - 32 3.15e-06 GTGTAATGTA AAAAGTAAAAAGATAAAAAAG ACTCATATGA chrIII:191462-191931 - 25 3.15e-06 TAGATCCACT AAGAAAAAACGAATATACGAA AGTTGAATAC chrX:90085-90185 + 2 3.49e-06 C GAAAAAGAAGGAAGACGGAAA AAGGACGGCA chrXII:214638-215158 + 2 3.85e-06 T TAAAAATAAAGGAGAATAAAA GTAAAAAATA chrVII:939044-939768 + 78 4.25e-06 ATCAAATTTG TAGAAAAATAAAATAGAAAAG AT chrXIII:320940-321324 + 52 4.25e-06 TAGTTAGCCA AAAAAATAAAAAATGGACGAG TCCGGAATCG chrXIV:567916-568566 - 67 4.25e-06 TCTATAAGGT GGAAAAAAAATACTAGAAAAG GAATAAGTGA chrXIII:408471-408773 + 14 4.25e-06 GGGACAACGC GCGATAAAAAAAAAATTAAAA GTAAAACTAC chrII:644987-645918 - 78 4.25e-06 TT TAGTAAAAAATGATAATGAAA GTGCTTATAT chrXV:281804-282709 - 21 4.68e-06 TTTGGTGGTG GACAAAAAAGAAATGCGCAAG CCCGGAATCG chrIV:1301534-1302955 - 19 5.16e-06 TTTGCTGCAA CAGTAAAAAAAAAGAATATAA CGTGAAGTAA chrXIII:751321-751548 - 49 5.68e-06 TAGGTCTTGA GAAAGAAAAGTGATAGGGTAA GTAATGGAAG chrII:452856-453725 + 72 6.24e-06 GCAGTGTTAT AAGAAAAATAGAATGAAATAA GATAAAGC chrXIII:159286-160186 - 17 6.24e-06 AATGGAAAGA GAAAAGAAAAGAGTATGAAAG GAACTTTAGA chrIV:769671-770463 - 42 6.24e-06 ATTTGGATCT GGAAAGAAAGAGAAAAAAAAG CACTGAAGAC chrXIII:258980-259479 - 76 7.51e-06 ATCA CAAGAAAACAGAATACACAAA TAATCAAGTT chrXII:1028770-1030537 + 2 7.51e-06 C CAGAACAACAAACTAAGGAAA TCAAGACTGA chrVIII:160435-160798 + 68 8.23e-06 TATCTATTTC GAAAATAAAAAATAAGTGAAA AGAACGAAAT chrXI:313142-313679 + 26 9.01e-06 TGAAGGCTAA AGGAAAAAAATAAAATGCCAT CTCCTAGAAT chrVIII:488203-488594 + 23 9.86e-06 GAAAAATTTT CAAAAAAAAAAACAGACCTAA CAAAAGGGCA chrIII:179056-179313 + 34 9.86e-06 GATATATGCC TAGAAGAAAGGAAGAGTGCAG ACTTGATAAT chrV:321550-323386 + 18 1.18e-05 GACTTCTACC ACGAGAAAAAAATTAAGAAAA TGCAACGCTG chrXI:578758-579401 + 64 1.18e-05 CGTTCAATGC TAAAGAAAAAAAATGAAAATA AGTTTCAATT chrXIV:715870-716989 - 32 1.18e-05 GAGCAGTAAT TAAAAAAAAAAAAAAGCATAT TGATAGATAG chrXV:832224-832858 - 63 1.28e-05 AGTTCTCCCT AAGAATAAAATAGTAAAGGAA GCTATTGCTA chrIV:465157-465623 - 80 1.28e-05 . AAGACCTAAAGAAAATAGAAA ACGGATTTAA chrIV:507654-509938 - 21 1.40e-05 AATAATCCAC AAGAACATAATAATGCTGAAG AAAACAAGGA chrII:44993-45322 + 13 1.52e-05 CTATCAAAAT TAGGAAAAAGAAATGAAGAAC GATGAGCCAA chrV:135148-135689 - 26 1.80e-05 TTCTTTTTCT CCGAAAATAAGAAAAAAGCAT CAGCAGTAAT chrXIV:776681-777160 - 33 1.80e-05 CAGGGCGCGC AATAAATAAGGGATATAGCAA AACTTGAAAC chrVII:876195-876971 - 62 1.80e-05 ACATTTGAGA CCGAAAAAAATAATAGCATAA TAAAAATAAA chrXVI:404508-407873 + 47 2.50e-05 TAGTAGGAAG CGGAAAATAATAATATAAGAA AGTAAACGCA chrXV:631741-632083 - 6 2.50e-05 ACCAAAAAGA AAGATGAAAAGGATAAACTAA TAATT chrXII:83869-84430 - 13 2.50e-05 AATACTGGCT GGCAAAAAAGAAATACTAAAT CAGACTCCTT chrI:28454-28994 + 5 2.50e-05 GCGC GATACAAAAAAAACACAGAAA TAGCCATAGG chrXI:490731-491466 - 6 2.93e-05 AATAACTGAA AAGATAATAAGAAAATTATAA AAGTA chrV:288177-288783 + 1 3.17e-05 . CAATAAAAAAAACGACACCAG CAGGATTTGA chrXIII:807708-808544 - 77 3.17e-05 AAT AAAAAGAGAAAGGTAAGAAAA AGAAACCAAC chrXV:91860-94878 + 38 3.42e-05 AATGAGTAAC AATAAAAAAGTAAATATGAAA TTTTCATTTC chrXVI:376906-377388 - 63 3.42e-05 TATATAATTA ACAAAAAGAAAAATAATCATA TGTATTGTAA chrV:23396-24045 - 44 3.70e-05 GCACCGGAGT TAAAACTAAAAAATATTAAAT GAGAAATGTG chrXVI:39929-40631 - 39 3.70e-05 ATAACGATTT CGAAAAATAGGAAAGATACAA CCATTCTTTA chrXI:458367-459019 - 29 3.99e-05 TTGTTGAACA CAATATAAAAAAATATAAAAT ATGGTTGCTA chrII:226869-227416 - 53 4.30e-05 ATTACTGTCC AAAAAATAACGACAACTGCAG GACTCGAACC chrIII:107122-107848 + 50 4.30e-05 TAAGTATACA TAAAAATAAATACGAATAGAA ATATAGTGGC chrXV:185572-186295 - 11 4.63e-05 CTGTGGAAAG AAAAATTAAGAGAAGAGAGAA TGTTCTTGCC chrXVI:879772-880579 - 40 4.99e-05 TGTTTTTCTT AGTAAAAAAGAAATAATCTAT AAATCATCAA chrXI:426715-427695 + 8 5.37e-05 GTATGTC TGGAAAAGAATACTATAAAAA TACCTGTTTA chrVII:185411-185981 + 5 5.77e-05 TTGA GATATAAAAAGGAAGTAGAAT TTAATATATT chrIII:236409-236757 + 7 6.20e-05 GGCTAA AAGGATAATAAAATAGGGCAG TTACAAATGT chrX:390795-390895 + 6 8.21e-05 AAATA GAGGGAAAAAAGATATACGTA TAAAAATATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARAAAAAAARAAWAWDRAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:459643-459979 1.5e-10 38_[-3]_41 chrIII:228752-229220 4.2e-10 22_[-3]_57 chrX:58644-58744 1.4e-09 74_[+3]_5 chrXII:167686-168249 1.8e-09 [+3]_79 chrII:478926-479574 3.8e-09 71_[+3]_8 chrIV:1201465-1202907 7.2e-09 40_[+3]_39 chrXII:704295-704585 8.9e-09 56_[-3]_23 chrVIII:85109-85514 1.1e-08 9_[+3]_70 chrVII:363826-364469 1.9e-08 44_[-3]_35 chrV:303888-307731 1.9e-08 34_[-3]_45 chrV:100724-102720 2.6e-08 9_[-3]_70 chrXI:393422-393660 3.1e-08 3_[+3]_76 chrVIII:562267-562574 3.7e-08 4_[-3]_75 chrXII:7-285 3.7e-08 38_[+3]_41 chrX:607863-607963 4.3e-08 7_[-3]_72 chrIX:197367-197985 6e-08 39_[-3]_40 chrXI:67798-68420 1.1e-07 40_[+3]_39 chrXII:962627-963355 1.1e-07 14_[+3]_65 chrXII:489293-489574 1.4e-07 77_[-3]_2 chrV:511924-512393 1.7e-07 55_[-3]_24 chrXIII:625850-627042 1.9e-07 52_[-3]_27 chrVI:221739-222043 2.8e-07 34_[+3]_45 chrXIII:362836-363414 2.8e-07 74_[+3]_5 chrXIV:725927-726399 2.8e-07 4_[+3]_75 chrX:663394-663494 3.7e-07 21_[-3]_58 chrVII:609251-610135 4.7e-07 77_[+3]_2 chrIV:1239323-1240154 4.7e-07 68_[+3]_11 chrX:538346-538446 4.7e-07 60_[-3]_19 chrIV:1305377-1306129 4.7e-07 55_[-3]_24 chrVII:436704-438434 7.7e-07 57_[-3]_22 chrXII:793700-797408 7.7e-07 15_[+3]_64 chrVII:930767-931199 7.7e-07 6_[+3]_73 chrXV:1003890-1006328 8.6e-07 13_[+3]_66 chrIII:78334-78764 1.2e-06 8_[+3]_71 chrXII:281310-283924 1.2e-06 34_[+3]_45 chrIV:339195-341891 1.4e-06 61_[+3]_18 chrVII:535469-535790 1.7e-06 72_[-3]_7 chrIV:520661-521437 1.9e-06 60_[-3]_19 chrVIII:466733-467526 2.1e-06 2_[-3]_77 chrXV:505682-507020 2.3e-06 7_[-3]_72 chrV:18599-19286 2.3e-06 70_[+3]_9 chrVI:147979-148924 3.2e-06 30_[+3]_49 chrX:223851-223951 3.2e-06 31_[-3]_48 chrIII:191462-191931 3.2e-06 24_[-3]_55 chrX:90085-90185 3.5e-06 1_[+3]_78 chrXII:214638-215158 3.9e-06 1_[+3]_78 chrVII:939044-939768 4.3e-06 77_[+3]_2 chrXIII:320940-321324 4.3e-06 51_[+3]_28 chrXIV:567916-568566 4.3e-06 66_[-3]_13 chrXIII:408471-408773 4.3e-06 13_[+3]_66 chrII:644987-645918 4.3e-06 77_[-3]_2 chrXV:281804-282709 4.7e-06 20_[-3]_59 chrIV:1301534-1302955 5.2e-06 18_[-3]_61 chrXIII:751321-751548 5.7e-06 48_[-3]_31 chrII:452856-453725 6.2e-06 71_[+3]_8 chrXIII:159286-160186 6.2e-06 16_[-3]_63 chrIV:769671-770463 6.2e-06 41_[-3]_38 chrXIII:258980-259479 7.5e-06 75_[-3]_4 chrXII:1028770-1030537 7.5e-06 1_[+3]_78 chrVIII:160435-160798 8.2e-06 67_[+3]_12 chrXI:313142-313679 9e-06 25_[+3]_54 chrVIII:488203-488594 9.9e-06 22_[+3]_57 chrIII:179056-179313 9.9e-06 33_[+3]_46 chrV:321550-323386 1.2e-05 17_[+3]_62 chrXI:578758-579401 1.2e-05 63_[+3]_16 chrXIV:715870-716989 1.2e-05 31_[-3]_48 chrXV:832224-832858 1.3e-05 62_[-3]_17 chrIV:465157-465623 1.3e-05 79_[-3] chrIV:507654-509938 1.4e-05 20_[-3]_59 chrII:44993-45322 1.5e-05 12_[+3]_67 chrV:135148-135689 1.8e-05 25_[-3]_54 chrXIV:776681-777160 1.8e-05 32_[-3]_47 chrVII:876195-876971 1.8e-05 61_[-3]_18 chrXVI:404508-407873 2.5e-05 46_[+3]_33 chrXV:631741-632083 2.5e-05 5_[-3]_74 chrXII:83869-84430 2.5e-05 12_[-3]_67 chrI:28454-28994 2.5e-05 4_[+3]_75 chrXI:490731-491466 2.9e-05 5_[-3]_74 chrV:288177-288783 3.2e-05 [+3]_79 chrXIII:807708-808544 3.2e-05 76_[-3]_3 chrXV:91860-94878 3.4e-05 37_[+3]_42 chrXVI:376906-377388 3.4e-05 62_[-3]_17 chrV:23396-24045 3.7e-05 43_[-3]_36 chrXVI:39929-40631 3.7e-05 38_[-3]_41 chrXI:458367-459019 4e-05 28_[-3]_51 chrII:226869-227416 4.3e-05 52_[-3]_27 chrIII:107122-107848 4.3e-05 49_[+3]_30 chrXV:185572-186295 4.6e-05 10_[-3]_69 chrXVI:879772-880579 5e-05 39_[-3]_40 chrXI:426715-427695 5.4e-05 7_[+3]_72 chrVII:185411-185981 5.8e-05 4_[+3]_75 chrIII:236409-236757 6.2e-05 6_[+3]_73 chrX:390795-390895 8.2e-05 5_[+3]_74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARAAAAAAARAAWAWDRAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RARAAAAAAARAAWAWDRAAA width=21 seqs=93 chrXII:459643-459979 ( 39) AAAAAAAAAAAAAAAAAGAAA 1 chrIII:228752-229220 ( 23) GAAAAAAAAAAAAAACGGAAA 1 chrX:58644-58744 ( 75) AAAAAAAAAAAAAAAAAAAAA 1 chrXII:167686-168249 ( 1) AAAAAAAAAAGAAAAAGAAAA 1 chrII:478926-479574 ( 72) CAAAAAAAAAAAAAATGGAAA 1 chrIV:1201465-1202907 ( 41) CAAAAAAAAAAAATGAGGAAA 1 chrXII:704295-704585 ( 57) AAAAGAAAAAAAAAAATGAAA 1 chrVIII:85109-85514 ( 10) AAGAAAAAAAAAAAATTCAAA 1 chrVII:363826-364469 ( 45) ACGAAAAAAAAAAAAATGAAA 1 chrV:303888-307731 ( 35) AAAAAAAAAAAAAAAGTAAAG 1 chrV:100724-102720 ( 10) AAAAGAAAAAGAAAATAGAAA 1 chrXI:393422-393660 ( 4) AAAAGAAAAAGAAAAGTGAAA 1 chrVIII:562267-562574 ( 5) AAAAAAAAAATGAAAATGAAA 1 chrXII:7-285 ( 39) AAAAAAAAAATGAAAATGAAA 1 chrX:607863-607963 ( 8) AAAAAAAAAATAAGATGGAAA 1 chrIX:197367-197985 ( 40) AAAAAAAAAAGAATAAAAAAT 1 chrXI:67798-68420 ( 41) AAAAAAATAAAAATATAGAAA 1 chrXII:962627-963355 ( 15) AATAAAAAAAAAATACTGAAG 1 chrXII:489293-489574 ( 78) GAAAAAAAAAAAAGATTGCAG 1 chrV:511924-512393 ( 56) AAGACAAAAAAAAAAGGGAAG 1 chrXIII:625850-627042 ( 53) GGGAAAAAAAGAAGAAACAAA 1 chrVI:221739-222043 ( 35) GAAAAAAAAAGAAAGTTGGAG 1 chrXIII:362836-363414 ( 75) CAAAGAAAAGAAAAAGGGAAG 1 chrXIV:725927-726399 ( 5) AAATAAAAAAAAATACTGAAG 1 chrX:663394-663494 ( 22) AAAAAAAAAAGAAAAAAAATA 1 chrVII:609251-610135 ( 78) GAGAAAAAAAAAAGGAACTAA 1 chrIV:1239323-1240154 ( 69) AAGAAGAAAAGGAAGAAGAAG 1 chrX:538346-538446 ( 61) GAAAAAAAAAAAATAATCAAC 1 chrIV:1305377-1306129 ( 56) TAAAGAAAAAAACAAAAGAAA 1 chrVII:436704-438434 ( 58) AAGAAAAGAAGAAGGCTGAAA 1 chrXII:793700-797408 ( 16) ACAAAAAAAAGAAGAAGACAA 1 chrVII:930767-931199 ( 7) GAAAAGAAAAAAATGCGCAAG 1 chrXV:1003890-1006328 ( 14) AAGGACAAAAAAATACGAAAA 1 chrIII:78334-78764 ( 9) AAGGAAAAAAAGAAACCAAAA 1 chrXII:281310-283924 ( 35) TAGAAAAAAAAGAAATGAAAT 1 chrIV:339195-341891 ( 62) GAAAGAAAAGGAAAGAAGTAA 1 chrVII:535469-535790 ( 73) AAGAAAATAAAAATAACGTAA 1 chrIV:520661-521437 ( 61) GAAAGAAAAATAAAACAAGAG 1 chrVIII:466733-467526 ( 3) GAGAAATAAGAACAAAGGGAA 1 chrXV:505682-507020 ( 8) AAGGAAAACAAAAAAGGAAAA 1 chrV:18599-19286 ( 71) GAGAAATAAGGGATATGGCAA 1 chrVI:147979-148924 ( 31) CAAGAAAAAGAACAACAAAAA 1 chrX:223851-223951 ( 32) AAAAGTAAAAAGATAAAAAAG 1 chrIII:191462-191931 ( 25) AAGAAAAAACGAATATACGAA 1 chrX:90085-90185 ( 2) GAAAAAGAAGGAAGACGGAAA 1 chrXII:214638-215158 ( 2) TAAAAATAAAGGAGAATAAAA 1 chrVII:939044-939768 ( 78) TAGAAAAATAAAATAGAAAAG 1 chrXIII:320940-321324 ( 52) AAAAAATAAAAAATGGACGAG 1 chrXIV:567916-568566 ( 67) GGAAAAAAAATACTAGAAAAG 1 chrXIII:408471-408773 ( 14) GCGATAAAAAAAAAATTAAAA 1 chrII:644987-645918 ( 78) TAGTAAAAAATGATAATGAAA 1 chrXV:281804-282709 ( 21) GACAAAAAAGAAATGCGCAAG 1 chrIV:1301534-1302955 ( 19) CAGTAAAAAAAAAGAATATAA 1 chrXIII:751321-751548 ( 49) GAAAGAAAAGTGATAGGGTAA 1 chrII:452856-453725 ( 72) AAGAAAAATAGAATGAAATAA 1 chrXIII:159286-160186 ( 17) GAAAAGAAAAGAGTATGAAAG 1 chrIV:769671-770463 ( 42) GGAAAGAAAGAGAAAAAAAAG 1 chrXIII:258980-259479 ( 76) CAAGAAAACAGAATACACAAA 1 chrXII:1028770-1030537 ( 2) CAGAACAACAAACTAAGGAAA 1 chrVIII:160435-160798 ( 68) GAAAATAAAAAATAAGTGAAA 1 chrXI:313142-313679 ( 26) AGGAAAAAAATAAAATGCCAT 1 chrVIII:488203-488594 ( 23) CAAAAAAAAAAACAGACCTAA 1 chrIII:179056-179313 ( 34) TAGAAGAAAGGAAGAGTGCAG 1 chrV:321550-323386 ( 18) ACGAGAAAAAAATTAAGAAAA 1 chrXI:578758-579401 ( 64) TAAAGAAAAAAAATGAAAATA 1 chrXIV:715870-716989 ( 32) TAAAAAAAAAAAAAAGCATAT 1 chrXV:832224-832858 ( 63) AAGAATAAAATAGTAAAGGAA 1 chrIV:465157-465623 ( 80) AAGACCTAAAGAAAATAGAAA 1 chrIV:507654-509938 ( 21) AAGAACATAATAATGCTGAAG 1 chrII:44993-45322 ( 13) TAGGAAAAAGAAATGAAGAAC 1 chrV:135148-135689 ( 26) CCGAAAATAAGAAAAAAGCAT 1 chrXIV:776681-777160 ( 33) AATAAATAAGGGATATAGCAA 1 chrVII:876195-876971 ( 62) CCGAAAAAAATAATAGCATAA 1 chrXVI:404508-407873 ( 47) CGGAAAATAATAATATAAGAA 1 chrXV:631741-632083 ( 6) AAGATGAAAAGGATAAACTAA 1 chrXII:83869-84430 ( 13) GGCAAAAAAGAAATACTAAAT 1 chrI:28454-28994 ( 5) GATACAAAAAAAACACAGAAA 1 chrXI:490731-491466 ( 6) AAGATAATAAGAAAATTATAA 1 chrV:288177-288783 ( 1) CAATAAAAAAAACGACACCAG 1 chrXIII:807708-808544 ( 77) AAAAAGAGAAAGGTAAGAAAA 1 chrXV:91860-94878 ( 38) AATAAAAAAGTAAATATGAAA 1 chrXVI:376906-377388 ( 63) ACAAAAAGAAAAATAATCATA 1 chrV:23396-24045 ( 44) TAAAACTAAAAAATATTAAAT 1 chrXVI:39929-40631 ( 39) CGAAAAATAGGAAAGATACAA 1 chrXI:458367-459019 ( 29) CAATATAAAAAAATATAAAAT 1 chrII:226869-227416 ( 53) AAAAAATAACGACAACTGCAG 1 chrIII:107122-107848 ( 50) TAAAAATAAATACGAATAGAA 1 chrXV:185572-186295 ( 11) AAAAATTAAGAGAAGAGAGAA 1 chrXVI:879772-880579 ( 40) AGTAAAAAAGAAATAATCTAT 1 chrXI:426715-427695 ( 8) TGGAAAAGAATACTATAAAAA 1 chrVII:185411-185981 ( 5) GATATAAAAAGGAAGTAGAAT 1 chrIII:236409-236757 ( 7) AAGGATAATAAAATAGGGCAG 1 chrX:390795-390895 ( 6) GAGGGAAAAAAGATATACGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARAAAAAAARAAWAWDRAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.0834 E= 8.8e-065 60 -32 40 -127 141 -132 -96 -1318 76 -313 104 -227 146 -1318 -113 -254 135 -254 -54 -286 137 -181 -132 -227 150 -1318 -413 -154 150 -1318 -213 -205 158 -254 -1318 -327 135 -313 -4 -1318 81 -1318 63 -95 139 -1318 -4 -1318 143 -81 -254 -386 46 -413 -54 46 137 -1318 -4 -485 46 -4 -32 -40 27 -181 46 0 27 -13 126 -1318 105 -67 -81 -127 162 -1318 -1318 -286 102 -313 33 -154 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARAAAAAAARAAWAWDRAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 93 E= 8.8e-065 0.473118 0.150538 0.247312 0.129032 0.827957 0.075269 0.096774 0.000000 0.526882 0.021505 0.387097 0.064516 0.860215 0.000000 0.086022 0.053763 0.795699 0.032258 0.129032 0.043011 0.806452 0.053763 0.075269 0.064516 0.881720 0.000000 0.010753 0.107527 0.881720 0.000000 0.043011 0.075269 0.935484 0.032258 0.000000 0.032258 0.795699 0.021505 0.182796 0.000000 0.548387 0.000000 0.290323 0.161290 0.817204 0.000000 0.182796 0.000000 0.838710 0.107527 0.032258 0.021505 0.430108 0.010753 0.129032 0.430108 0.806452 0.000000 0.182796 0.010753 0.430108 0.182796 0.150538 0.236559 0.376344 0.053763 0.258065 0.311828 0.376344 0.172043 0.451613 0.000000 0.645161 0.118280 0.107527 0.129032 0.956989 0.000000 0.000000 0.043011 0.634409 0.021505 0.236559 0.107527 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RARAAAAAAARAAWAWDRAAA MEME-3 regular expression -------------------------------------------------------------------------------- [AG]A[AG]AAAAAAA[AG]AA[AT]A[AT][ATG][GA]AA[AG] -------------------------------------------------------------------------------- Time 979.48 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:266166-266675 1.50e-07 7_[+2(1.12e-06)]_23_[+1(2.53e-08)]_\ 28 chrVIII:34374-36296 6.35e-01 100 chrXIV:627736-629459 3.97e-01 100 chrVI:157631-158340 7.12e-04 51_[-2(2.48e-07)]_28 chrXI:109252-110569 2.64e-01 100 chrI:141587-143707 2.99e-01 100 chrIV:1236369-1238600 8.48e-01 100 chrXVI:794486-796460 1.04e-01 100 chrXIII:463298-463913 8.04e-05 41_[+1(8.98e-09)]_38 chrVII:310484-312706 3.43e-01 100 chrVII:110397-110914 3.54e-07 27_[-1(2.69e-07)]_22_[-2(7.25e-07)]_\ 9 chrXI:258490-258990 5.11e-01 100 chrIV:488451-489169 6.65e-06 44_[-1(1.26e-09)]_35 chrIII:14426-17099 2.74e-01 100 chrXVI:352063-353313 9.39e-01 100 chrIV:835773-836208 8.41e-01 100 chrXI:426715-427695 1.41e-01 7_[+3(5.37e-05)]_72 chrIX:210522-211020 2.31e-01 100 chrXIV:351930-353009 1.92e-01 100 chrIV:602602-602782 9.36e-01 100 chrXII:241591-242004 2.71e-01 100 chrIX:197367-197985 1.00e-10 8_[+1(1.75e-10)]_10_[-3(5.96e-08)]_\ 40 chrII:234601-236012 8.18e-01 100 chrXI:322427-322954 9.12e-01 100 chrXVI:39929-40631 2.59e-02 38_[-3(3.70e-05)]_41 chrVII:122070-122556 8.96e-12 5_[+2(9.46e-08)]_23_[+1(3.54e-10)]_\ 30 chrXV:520601-520942 2.56e-01 100 chrXI:589810-592286 7.01e-01 100 chrVII:703471-703729 6.77e-01 100 chrXV:671087-671436 8.33e-01 100 chrXII:1017706-1019381 6.89e-01 100 chrV:18599-19286 1.25e-02 70_[+3(2.32e-06)]_9 chrXVI:560050-560495 4.53e-04 46_[-2(2.48e-07)]_33 chrII:405318-406314 2.32e-01 100 chrIV:507654-509938 2.86e-02 20_[-3(1.40e-05)]_59 chrXV:464231-464726 1.09e-05 21_[+2(1.49e-09)]_58 chrIV:568669-569297 1.84e-07 30_[+2(3.88e-06)]_22_[+1(8.98e-09)]_\ 6 chrXIII:586405-586895 9.75e-06 43_[-1(7.75e-10)]_36 chrVI:53059-55457 2.41e-01 100 chrXII:611738-612002 6.97e-01 100 chrI:28454-28994 5.44e-02 4_[+3(2.50e-05)]_75 chrX:391804-391904 7.67e-01 100 chrVI:222927-224142 2.53e-01 100 chrVIII:134064-134659 1.42e-10 9_[+2(2.70e-08)]_22_[+1(5.26e-10)]_\ 27 chrXII:734706-735037 4.37e-07 25_[+1(7.12e-11)]_54 chrXIII:122885-124688 4.77e-02 11_[+3(5.37e-05)]_68 chrXIII:886978-889297 7.80e-01 100 chrXIV:559295-559488 9.86e-01 100 chrVII:115239-115769 3.93e-03 33_[+2(6.22e-07)]_46 chrXVI:743743-744613 4.43e-02 100 chrXII:949401-953885 1.89e-01 100 chrIV:1305377-1306129 4.17e-03 55_[-3(4.72e-07)]_24 chrXV:409366-410239 9.09e-01 100 chrXIII:67532-68032 5.31e-01 100 chrVII:736194-736680 5.72e-01 100 chrXI:431897-433103 1.20e-01 100 chrX:197143-197243 3.34e-06 39_[-2(1.77e-10)]_40 chrV:522741-522937 4.03e-01 100 chrXVI:209912-210473 4.97e-07 57_[-1(1.75e-10)]_22 chrV:441779-442666 7.99e-01 100 chrXI:217241-218708 6.20e-01 100 chrXII:712091-713546 3.40e-01 100 chrXI:518803-521103 4.39e-01 100 chrX:620521-620621 6.29e-01 100 chrV:77557-79853 6.56e-01 100 chrIV:644950-645385 5.72e-06 43_[-1(5.26e-10)]_36 chrVI:162017-162492 4.52e-13 23_[+2(6.79e-09)]_21_[+1(6.82e-12)]_\ 14 chrXIII:222583-223906 5.45e-01 100 chrXIII:807708-808544 9.78e-02 76_[-3(3.17e-05)]_3 chrXII:941047-941265 9.35e-01 100 chrXII:374212-374686 3.72e-01 100 chrVII:806095-807798 3.12e-02 100 chrXI:1-1011 5.11e-01 100 chrXI:430239-431628 3.20e-01 100 chrXII:855371-857586 7.70e-01 100 chrII:644987-645918 2.07e-02 77_[-3(4.25e-06)]_2 chrV:100724-102720 2.16e-04 9_[-3(2.64e-08)]_70 chrXII:253881-255299 3.51e-01 100 chrIV:913942-914890 4.07e-01 100 chrXII:7-285 1.29e-04 38_[+3(3.69e-08)]_41 chrVI:167274-167717 8.34e-04 51_[+1(5.23e-07)]_28 chrXVI:433133-434297 1.16e-01 100 chrV:430971-431565 9.37e-02 100 chrXIV:546955-547399 8.44e-06 40_[+1(2.54e-09)]_39 chrVII:648039-648506 7.39e-01 100 chrXII:214638-215158 1.54e-09 1_[+3(3.85e-06)]_20_[-1(8.33e-11)]_\ 37 chrII:44993-45322 3.27e-02 12_[+3(1.52e-05)]_67 chrXII:784144-784556 1.24e-05 53_[+2(3.06e-08)]_26 chrXV:796831-798782 3.42e-01 100 chrVII:882117-884084 5.04e-01 100 chrV:569404-569857 8.71e-01 100 chrIII:28517-31171 8.82e-01 100 chrXV:903524-905749 8.62e-01 100 chrIII:293667-294451 1.11e-01 100 chrXV:21965-22427 6.94e-01 100 chrVII:483289-483737 2.32e-03 22_[+1(3.08e-07)]_57 chrXVI:188114-188969 4.79e-02 100 chrXII:424113-424438 8.14e-01 100 chrXVI:785698-786073 4.33e-01 100 chrVIII:125907-127847 3.03e-01 100 chrV:311753-312297 3.45e-07 55_[-1(8.33e-11)]_24 chrII:36178-36590 2.31e-03 63_[+2(2.48e-07)]_16 chrXVI:576102-576574 1.22e-01 70_[-3(8.80e-05)]_9 chrXII:930555-931876 1.57e-02 65_[+1(6.31e-05)]_14 chrXII:150035-151736 7.52e-01 100 chrII:477103-477799 3.45e-02 100 chrVII:876195-876971 6.69e-02 61_[-3(1.80e-05)]_18 chrXVI:879772-880579 1.09e-01 39_[-3(4.99e-05)]_40 chrXII:932092-932537 3.46e-01 100 chrXIV:725927-726399 9.14e-08 4_[+3(2.84e-07)]_[+1(2.88e-07)]_54 chrXII:1012048-1012396 2.19e-03 12_[+3(6.66e-05)]_67 chrIV:1352261-1352725 2.10e-10 30_[-1(3.54e-10)]_23_[-2(9.46e-08)]_\ 5 chrIV:321677-321950 4.98e-01 100 chrV:492193-492573 9.93e-07 26_[-1(3.08e-07)]_23_[-2(7.25e-07)]_\ 9 chrIX:254988-257157 7.56e-01 100 chrXVI:901493-901906 7.46e-01 100 chrXV:384810-385022 2.79e-01 100 chrXII:805381-807181 6.30e-01 100 chrII:504469-504765 4.00e-01 100 chrXV:274476-275006 1.17e-01 53_[+1(7.23e-05)]_26 chrVII:531470-531810 1.84e-07 19_[+2(3.88e-06)]_22_[+1(8.98e-09)]_\ 17 chrXIII:408471-408773 2.08e-04 13_[+3(4.25e-06)]_20_[-1(5.69e-05)]_\ 25 chrVII:989818-990598 6.91e-01 100 chrIV:410190-410755 9.36e-06 [+1(2.54e-09)]_79 chrV:130806-131407 1.40e-10 33_[-1(5.26e-10)]_22_[-2(9.46e-08)]_\ 3 chrVII:287001-287800 9.50e-04 7_[-1(5.93e-07)]_72 chrXV:899939-901230 1.06e-01 56_[-2(4.00e-05)]_23 chrII:347401-347892 1.26e-06 6_[+2(9.07e-07)]_37_[-1(2.88e-07)]_\ 15 chrXV:677763-679182 9.68e-01 100 chrX:374199-374299 5.64e-09 35_[-1(8.13e-09)]_22_[-2(8.52e-08)]_\ 1 chrVII:405281-405756 5.88e-09 1_[+2(8.52e-08)]_22_[+1(8.13e-09)]_\ 35 chrII:604149-607554 9.68e-01 100 chrXII:459643-459979 8.87e-07 38_[-3(1.45e-10)]_41 chrXII:47572-49079 3.56e-01 100 chrXVI:768878-769495 1.55e-06 78_[-1(1.12e-09)]_1 chrXIII:420261-420907 1.96e-06 61_[-1(7.75e-10)]_18 chrXIV:173553-174708 8.08e-01 100 chrIV:975868-976742 3.34e-01 100 chrI:180928-181471 6.57e-01 100 chrXI:313142-313679 2.33e-06 25_[+3(9.01e-06)]_2_[-1(2.69e-07)]_\ 31 chrXI:162288-162775 2.57e-09 13_[-1(8.13e-09)]_22_[-2(8.52e-08)]_\ 23 chrV:27845-29725 6.21e-01 100 chrXI:379476-379980 2.52e-10 1_[+2(3.06e-08)]_24_[+1(7.75e-10)]_\ 33 chrII:326576-327143 1.33e-04 35_[-2(3.23e-07)]_44 chrIV:721800-722139 3.11e-01 100 chrIV:538932-539271 2.99e-01 100 chrVII:205282-205947 2.39e-02 65_[-3(6.66e-05)]_14 chrX:378107-378207 2.65e-04 62_[+2(3.06e-08)]_17 chrIV:116256-118240 9.50e-02 100 chrVII:798541-800302 4.71e-01 100 chrXIII:751321-751548 2.38e-03 48_[-3(5.68e-06)]_31 chrVII:766129-766480 2.89e-01 100 chrXIII:302675-303110 6.82e-01 100 chrXII:920107-922650 2.48e-01 100 chrVII:1004025-1004420 1.28e-04 43_[+2(9.46e-08)]_36 chrV:23396-24045 4.43e-02 43_[-3(3.70e-05)]_36 chrVII:323448-324624 2.64e-02 100 chrVIII:381172-383471 5.86e-01 100 chrIII:315626-316616 6.86e-01 100 chrIII:179056-179313 1.14e-02 33_[+3(9.86e-06)]_46 chrVII:823262-823713 2.28e-04 44_[+2(3.06e-08)]_35 chrII:429145-430534 5.83e-01 100 chrV:354683-355382 7.96e-01 100 chrIII:107122-107848 9.06e-02 17_[+3(8.21e-05)]_11_[+3(4.30e-05)]_\ 30 chrI:138918-139391 1.41e-05 47_[+2(1.49e-09)]_32 chrXII:198323-199785 3.22e-01 100 chrXII:837584-839448 7.77e-01 100 chrIV:76886-77109 7.96e-01 100 chrX:348774-348874 7.26e-01 100 chrIV:427614-428749 7.98e-01 100 chrVIII:475474-475899 3.37e-07 77_[-1(1.13e-10)]_2 chrXIV:783482-784316 5.92e-02 100 chrXI:202832-203330 4.65e-06 11_[+1(3.54e-10)]_68 chrXIII:837706-838275 2.10e-04 47_[+1(5.23e-07)]_32 chrIV:385232-387866 6.21e-01 100 chrXIV:374678-375110 1.03e-03 24_[+2(1.72e-07)]_55 chrX:139102-139202 1.09e-01 57_[+3(7.15e-05)]_22 chrIII:191462-191931 5.43e-03 24_[-3(3.15e-06)]_55 chrX:73371-73471 1.36e-01 100 chrIV:449052-450108 8.60e-01 100 chrII:415529-415855 4.33e-01 100 chrXVI:810448-811045 2.03e-04 24_[+1(5.93e-07)]_55 chrV:138436-140896 7.88e-01 100 chrIV:1401255-1403516 7.43e-01 100 chrXVI:789647-789932 6.88e-01 100 chrXV:444595-446242 4.18e-01 100 chrX:542753-542853 2.51e-01 100 chrXIV:715870-716989 2.43e-03 31_[-3(1.18e-05)]_48 chrX:58644-58744 4.06e-06 74_[+3(1.43e-09)]_5 chrXII:426902-427436 2.07e-07 12_[+2(3.88e-06)]_22_[+1(8.98e-09)]_\ 24 chrIV:1278644-1279042 8.83e-01 100 chrVII:648727-649407 7.20e-03 100 chrXII:636623-640258 4.44e-01 100 chrII:59504-61243 9.12e-01 100 chrXV:989032-989543 7.34e-03 16_[-2(3.47e-06)]_63 chrVII:794123-794620 5.42e-01 100 chrXIV:585335-586656 6.79e-01 100 chrX:290895-290995 2.51e-01 100 chrVII:914882-915237 9.18e-01 100 chrVIII:562267-562574 3.09e-04 4_[-3(3.69e-08)]_75 chrI:69867-70832 1.17e-01 100 chrXIII:625850-627042 1.68e-03 52_[-3(1.91e-07)]_27 chrXII:962627-963355 1.77e-07 14_[+3(1.09e-07)]_[+1(2.88e-07)]_44 chrXIV:253198-254202 4.35e-01 100 chrVII:185411-185981 1.08e-07 4_[+3(5.77e-05)]_50_[-1(3.54e-10)]_\ 4 chrIV:1016907-1017508 3.32e-07 57_[-1(1.75e-10)]_22 chrV:176889-177446 2.29e-06 24_[+1(1.75e-10)]_55 chrVIII:488203-488594 4.61e-03 22_[+3(9.86e-06)]_57 chrVII:23872-25923 4.95e-01 100 chrII:88898-89922 5.96e-01 100 chrIII:236409-236757 1.07e-01 6_[+3(6.20e-05)]_73 chrXII:728185-728546 9.70e-01 100 chrXVI:376906-377388 5.78e-02 62_[-3(3.42e-05)]_17 chrXII:83869-84430 6.64e-02 12_[-3(2.50e-05)]_67 chrXV:91860-94878 7.90e-02 37_[+3(3.42e-05)]_42 chrXII:731890-732257 1.01e-04 66_[+2(1.84e-08)]_13 chrIII:11095-11527 6.31e-01 100 chrXVI:280550-281884 2.01e-01 100 chrXI:333811-335008 5.66e-01 100 chrXV:80332-83516 4.82e-01 100 chrXIII:378905-379613 3.17e-01 100 chrX:517644-517744 3.60e-06 8_[-1(4.90e-07)]_22_[-2(1.80e-06)]_\ 28 chrIV:339195-341891 9.04e-03 61_[+3(1.35e-06)]_18 chrXV:901470-901699 9.99e-01 100 chrVIII:466733-467526 8.75e-04 2_[-3(2.09e-06)]_77 chrII:135990-136292 3.71e-01 100 chrII:300971-301720 2.79e-01 100 chrXII:515380-516817 6.52e-01 100 chrV:511924-512393 6.36e-04 55_[-3(1.66e-07)]_24 chrXII:809150-814607 3.40e-01 100 chrVI:226436-226949 2.45e-06 53_[-1(3.54e-10)]_26 chrXV:722713-725705 9.51e-01 100 chrII:474051-474258 3.76e-01 100 chrXV:594124-594677 1.30e-11 11_[-1(7.75e-10)]_22_[-2(1.78e-09)]_\ 25 chrXI:578758-579401 8.47e-08 2_[+1(1.12e-09)]_40_[+3(1.18e-05)]_\ 16 chrV:303888-307731 5.01e-05 34_[-3(1.87e-08)]_45 chrXII:1041686-1042308 5.51e-01 100 chrIII:228752-229220 5.92e-06 22_[-3(4.21e-10)]_57 chrXIII:225338-227103 3.98e-01 100 chrXIII:751711-752007 5.53e-01 100 chrXI:158147-159637 1.97e-01 100 chrXI:282595-284941 7.87e-01 100 chrIX:388135-389104 5.86e-01 100 chrII:680300-682186 6.03e-01 100 chrXV:252789-255084 7.64e-01 100 chrIV:465157-465623 1.20e-02 79_[-3(1.28e-05)] chrXVI:731588-732305 3.67e-01 100 chrIV:1161559-1161916 6.12e-02 38_[-1(9.45e-05)]_41 chrXV:340117-340601 2.44e-03 41_[-2(7.25e-07)]_38 chrX:223851-223951 7.73e-03 31_[-3(3.15e-06)]_48 chrX:663394-663494 6.50e-04 22_[-3(1.66e-07)]_57 chrXI:219606-220131 4.98e-07 76_[+2(1.77e-10)]_3 chrXII:167686-168249 2.54e-08 [+3(1.84e-09)]_13_[-1(8.84e-05)]_45 chrIV:491447-492679 1.36e-01 100 chrXII:673010-675521 2.50e-01 100 chrVII:972239-974052 9.88e-02 100 chrXVI:699915-700736 4.11e-01 100 chrXVI:214602-215197 7.76e-01 100 chrXI:44018-47007 2.69e-01 100 chrIII:168089-168628 2.01e-11 [-1(5.26e-10)]_22_[-2(2.70e-08)]_36 chrXV:281804-282709 6.16e-04 20_[-3(4.68e-06)]_59 chrII:87872-88627 7.58e-02 100 chrV:166638-167659 2.99e-01 100 chrXV:968108-968417 3.92e-01 100 chrXII:875188-875662 5.28e-09 [+2(6.22e-07)]_46_[+1(1.12e-09)]_12 chrVII:276881-278764 6.30e-01 100 chrXVI:572016-572579 6.67e-13 21_[+2(6.79e-09)]_21_[+1(6.82e-12)]_\ 16 chrXIII:352097-352542 7.79e-08 10_[+2(2.48e-07)]_41_[+1(5.05e-08)]_\ 7 chrIX:98191-100032 9.87e-01 100 chrXVI:622347-622874 6.63e-04 50_[-2(2.48e-07)]_29 chrV:469264-469677 2.96e-04 36_[+2(3.06e-08)]_43 chrXII:568068-570884 7.41e-01 100 chrII:548025-549467 9.48e-01 100 chrVII:930767-931199 1.43e-16 6_[+3(7.65e-07)]_[-1(6.82e-12)]_21_\ [-2(6.79e-09)]_10 chrXV:980471-981158 6.28e-01 100 chrV:266187-268253 2.43e-01 100 chrVII:146671-149528 6.78e-01 100 chrXIII:650781-653005 3.07e-01 100 chrXIII:131545-132111 7.06e-06 54_[-1(8.13e-09)]_25 chrV:363628-364432 7.99e-01 100 chrXIII:861140-861480 6.69e-01 100 chrXIV:567916-568566 6.92e-03 66_[-3(4.25e-06)]_13 chrXII:201627-203044 4.64e-01 100 chrVII:730948-731462 6.61e-04 26_[+1(5.93e-07)]_53 chrXII:281310-283924 3.77e-03 34_[+3(1.21e-06)]_45 chrV:51774-53283 9.31e-01 100 chrVIII:115298-116412 2.21e-01 100 chrX:538346-538446 4.34e-08 32_[+1(1.32e-08)]_7_[-3(4.72e-07)]_\ 19 chrIV:1095137-1095702 3.50e-08 8_[-1(5.05e-08)]_42_[-2(1.72e-07)]_\ 8 chrXII:11029-12000 6.91e-02 73_[-2(5.94e-05)]_6 chrII:555765-558524 3.37e-01 100 chrXIV:229363-230999 3.99e-01 100 chrIV:1150140-1150413 5.93e-01 100 chrII:642869-643281 1.53e-04 32_[-2(1.84e-08)]_47 chrVII:544284-546103 2.48e-01 100 chrXII:704295-704585 1.31e-04 56_[-3(8.92e-09)]_23 chrIV:769671-770463 1.08e-02 41_[-3(6.24e-06)]_38 chrII:544522-544842 5.73e-01 100 chrVI:4477-5442 3.03e-01 100 chrXIV:602101-602564 1.58e-12 29_[+2(6.79e-09)]_24_[+1(7.12e-11)]_\ 5 chrXV:877619-878005 7.52e-01 100 chrX:606118-606218 4.88e-01 100 chrIV:30-380 3.15e-01 100 chrVIII:103896-106108 9.39e-01 100 chrXII:366024-366563 2.36e-01 100 chrX:415811-415911 5.07e-04 22_[-2(1.54e-05)]_57 chrIII:227700-228230 6.18e-05 26_[+2(1.84e-08)]_53 chrIV:1449865-1451267 2.54e-01 100 chrXIII:161848-164383 3.86e-01 100 chrV:406645-409506 8.01e-01 100 chrII:254645-255902 1.59e-01 100 chrIV:520661-521437 7.35e-09 15_[+1(5.26e-10)]_24_[-3(1.88e-06)]_\ 19 chrXV:1003890-1006328 5.37e-03 13_[+3(8.60e-07)]_66 chrII:478926-479574 4.93e-05 71_[+3(3.76e-09)]_8 chrXIV:301662-303746 5.16e-02 100 chrXIII:504670-505249 6.59e-01 100 chrVI:269802-270156 1.98e-01 100 chrX:90085-90185 1.18e-02 1_[+3(3.49e-06)]_78 chrV:551069-551561 6.75e-12 27_[-1(7.12e-11)]_24_[-2(6.79e-09)]_\ 7 chrXIII:880482-880908 2.66e-01 100 chrIX:438443-439883 8.01e-01 100 chrXI:665736-666797 4.66e-01 100 chrI:229281-230191 8.31e-01 100 chrXIII:605698-606124 5.00e-01 100 chrXVI:136351-136673 7.18e-01 100 chrIV:1239323-1240154 3.10e-03 68_[+3(4.72e-07)]_11 chrX:523814-523914 4.35e-05 51_[-2(5.82e-09)]_28 chrXV:779705-781045 2.12e-01 100 chrXIV:771813-772420 2.97e-01 100 chrXIV:104614-105135 2.23e-05 24_[+1(2.53e-08)]_55 chrXIV:493266-495622 4.48e-01 100 chrXIII:759438-763193 8.52e-01 100 chrXI:99728-107582 8.71e-01 100 chrIV:1488360-1488628 6.41e-01 100 chrV:423100-425337 5.27e-02 100 chrVIII:555921-557203 2.17e-01 100 chrXIII:362836-363414 3.95e-07 31_[+1(2.69e-07)]_22_[+3(2.84e-07)]_\ 5 chrXV:663502-664103 1.90e-06 67_[-1(7.75e-10)]_12 chrXI:513193-513673 1.23e-01 100 chrXIV:330400-332423 7.24e-01 100 chrV:362228-362465 3.78e-01 100 chrIII:176741-178847 8.09e-01 100 chrXIII:320940-321324 5.57e-08 51_[+3(4.25e-06)]_[-1(2.54e-09)]_7 chrV:321550-323386 2.09e-02 17_[+3(1.18e-05)]_62 chrIV:802550-803018 1.15e-10 4_[-1(5.26e-10)]_22_[-2(2.70e-08)]_\ 32 chrXV:185572-186295 5.38e-02 10_[-3(4.63e-05)]_69 chrXVI:645339-645793 8.49e-01 100 chrX:156211-156311 5.35e-01 100 chrVII:787004-788770 6.78e-01 100 chrXIV:6534-7170 1.08e-01 73_[-2(7.01e-05)]_6 chrVII:779381-779915 3.04e-11 17_[+2(3.59e-09)]_22_[+1(6.81e-10)]_\ 19 chrVII:661521-661942 3.47e-04 67_[+2(9.46e-08)]_12 chrXII:5473-5937 3.80e-01 100 chrVI:204804-205200 1.70e-07 23_[-2(1.77e-10)]_56 chrXV:407592-408227 7.09e-01 100 chrXII:687663-688156 2.21e-10 7_[-1(7.75e-10)]_24_[-2(3.06e-08)]_\ 27 chrV:99854-100406 6.97e-03 52_[+2(1.80e-06)]_27 chrVII:877395-879141 2.38e-01 100 chrXVI:718347-719570 7.81e-02 100 chrXIV:632401-632872 3.90e-07 12_[+2(9.39e-06)]_24_[+1(5.93e-07)]_\ 22 chrV:224689-225712 5.96e-01 100 chrXV:631741-632083 1.18e-02 5_[-3(2.50e-05)]_74 chrXV:31949-33776 2.57e-01 100 chrV:435567-436027 2.96e-11 12_[-1(3.54e-10)]_23_[-2(9.46e-08)]_\ 23 chrV:85112-86904 6.02e-01 100 chrXII:737725-738167 9.56e-02 100 chrXVI:775634-776197 9.18e-01 100 chrVII:479102-483001 7.81e-01 100 chrXIV:412997-417350 5.31e-01 100 chrIV:118402-118870 8.42e-01 100 chrXV:232012-232461 1.05e-01 23_[+2(8.29e-05)]_56 chrV:442933-443518 4.34e-12 34_[-1(7.12e-11)]_24_[-2(6.79e-09)] chrIX:370220-370642 5.22e-09 35_[+2(2.67e-05)]_22_[+1(1.75e-10)]_\ 1 chrIX:129235-130179 1.65e-01 100 chrIV:946136-946787 8.83e-01 100 chrXIV:505155-507587 9.66e-01 100 chrX:414775-414875 2.43e-11 8_[+2(9.46e-08)]_23_[+1(3.54e-10)]_\ 27 chrV:288177-288783 1.11e-07 [+3(3.17e-05)]_52_[-2(1.84e-08)]_6 chrIV:667693-668244 9.06e-02 100 chrXI:38598-39244 8.49e-01 100 chrIX:174812-175357 9.85e-05 40_[+1(2.53e-08)]_39 chrIX:231195-232456 8.00e-01 100 chrXIV:499171-503328 5.22e-01 100 chrX:435649-435749 8.65e-01 100 chrXV:778164-779482 6.87e-01 100 chrIII:124463-125135 6.53e-01 100 chrXV:866559-868405 1.06e-01 100 chrXI:617686-619270 6.30e-01 100 chrVIII:175090-175413 2.54e-01 100 chrVIII:554079-554618 5.07e-01 100 chrI:81913-82245 4.69e-01 100 chrXII:1028770-1030537 8.74e-03 1_[+3(7.51e-06)]_78 chrX:355129-355229 1.69e-07 31_[+1(8.13e-09)]_18_[+2(3.88e-06)]_\ 9 chrIV:359352-359846 3.96e-03 27_[+2(6.22e-07)]_52 chrVIII:504117-505625 7.04e-01 100 chrIX:137815-139357 5.03e-01 100 chrXVI:701809-702405 3.64e-01 100 chrV:53533-53919 2.34e-01 100 chrXII:707878-710973 2.61e-01 100 chrXII:793700-797408 5.96e-03 15_[+3(7.65e-07)]_64 chrXIII:701656-703633 9.99e-01 100 chrXVI:514156-517121 6.85e-01 100 chrIV:489642-491266 5.39e-01 100 chrXV:167976-168554 7.98e-01 100 chrXIII:631781-634830 6.73e-01 100 chrXIV:569660-570146 2.68e-12 21_[-1(7.12e-11)]_24_[-2(6.79e-09)]_\ 13 chrIV:599574-600184 4.68e-02 14_[-1(3.35e-05)]_65 chrXII:588884-589323 2.97e-01 100 chrI:71577-73685 2.28e-01 100 chrVI:101154-101673 2.47e-06 12_[+2(1.49e-09)]_67 chrVII:255169-255685 9.89e-01 100 chrIV:132755-133619 3.19e-01 100 chrIV:322148-323660 3.24e-02 100 chrVII:700183-701264 1.58e-07 1_[+2(1.48e-06)]_32_[+1(1.89e-07)]_\ 25 chrV:461736-462175 8.73e-01 100 chrXIII:549875-553388 9.61e-01 100 chrXI:307909-308429 8.97e-11 32_[-1(7.75e-10)]_24_[-2(3.06e-08)]_\ 2 chrVII:555161-558118 4.86e-01 100 chrXI:393422-393660 3.00e-05 3_[+3(3.13e-08)]_76 chrIV:1524109-1525641 4.10e-01 100 chrXV:438416-439008 2.38e-06 47_[+1(1.12e-09)]_32 chrII:226869-227416 1.51e-03 52_[-3(4.30e-05)]_27 chrVII:440302-443712 8.03e-01 100 chrXIV:619417-620013 8.27e-01 100 chrVII:438602-440123 1.09e-01 9_[+1(5.89e-05)]_70 chrXIII:296701-299128 2.25e-01 100 chrIII:141962-143001 1.36e-01 100 chrXIII:224076-224424 8.31e-01 100 chrII:165055-165571 6.23e-01 100 chrXII:780681-781880 5.15e-02 100 chrIII:162090-164137 2.30e-02 36_[+3(9.42e-05)]_43 chrVII:774114-774607 5.04e-07 38_[+2(1.77e-10)]_41 chrIX:325549-326094 1.04e-05 20_[+1(2.53e-08)]_59 chrXVI:75067-76740 1.70e-01 100 chrXIII:372152-372717 4.00e-06 68_[-1(7.75e-10)]_11 chrXII:368273-371699 7.82e-01 100 chrIX:316130-318282 6.48e-02 100 chrII:300070-300268 8.34e-01 100 chrVIII:160435-160798 2.43e-02 67_[+3(8.23e-06)]_12 chrXVI:856766-857155 3.54e-06 35_[+1(2.54e-09)]_44 chrV:141067-141451 1.25e-01 100 chrXV:113588-114249 5.70e-01 100 chrXIV:631534-632136 3.74e-09 68_[-1(5.94e-13)]_11 chrIV:1201465-1202907 9.84e-05 40_[+3(7.23e-09)]_39 chrXIII:290538-291197 4.44e-07 26_[+1(1.75e-10)]_53 chrXVI:860096-860665 4.10e-05 48_[+2(6.79e-09)]_31 chrVII:254120-254781 5.12e-01 100 chrXII:1051904-1052384 3.81e-05 29_[-2(6.79e-09)]_50 chrXV:505682-507020 5.35e-03 7_[-3(2.32e-06)]_72 chrIV:992601-993156 5.31e-13 3_[+2(6.79e-09)]_21_[+1(6.82e-12)]_\ 34 chrIX:68213-69883 3.79e-01 100 chrII:236265-237361 2.09e-01 100 chrIV:472782-473502 8.08e-01 100 chrXII:348081-348838 3.81e-01 100 chrXI:302635-303262 1.26e-02 19_[+2(1.54e-05)]_60 chrVIII:74778-76452 6.02e-01 100 chrVII:319600-320155 9.42e-01 100 chrXIII:667224-667540 8.32e-01 100 chrXIII:923409-924361 4.33e-01 100 chrVIII:147500-149271 9.65e-01 100 chrXV:709992-710487 3.45e-06 11_[+2(1.80e-06)]_22_[+1(4.90e-07)]_\ 25 chrXIV:61521-64650 2.55e-01 100 chrXI:517759-518120 9.57e-01 100 chrX:745254-745354 6.51e-01 100 chrXV:605129-606633 2.08e-01 100 chrIV:129483-130984 3.46e-02 100 chrXII:92314-92866 7.40e-06 7_[+2(1.49e-09)]_72 chrII:592280-593295 2.47e-02 32_[+2(8.21e-06)]_47 chrX:701747-701847 1.59e-01 100 chrVII:640884-642083 1.22e-02 56_[+1(8.27e-05)]_23 chrXVI:172877-174154 4.01e-01 100 chrXII:498279-499751 2.93e-01 100 chrVI:180692-181242 2.49e-08 64_[-1(6.82e-12)]_15 chrXIII:258980-259479 2.18e-07 39_[-2(5.82e-09)]_15_[-3(7.51e-06)]_\ 4 chrIV:619687-620201 3.52e-01 100 chrVII:533364-535232 2.92e-01 100 chrVI:147979-148924 1.30e-02 30_[+3(3.15e-06)]_49 chrXII:97143-97848 8.39e-01 100 chrX:450841-450941 2.09e-01 100 chrVII:738675-739500 8.21e-01 100 chrXVI:642042-643474 3.79e-01 100 chrXIV:776681-777160 2.60e-02 32_[-3(1.80e-05)]_47 chrXI:67798-68420 7.28e-04 40_[+3(1.09e-07)]_39 chrXII:489293-489574 5.58e-07 35_[+2(9.07e-07)]_21_[-3(1.44e-07)]_\ 2 chrXIV:234161-235726 2.91e-01 100 chrIV:229478-230966 3.23e-01 100 chrVII:23-978 2.80e-01 100 chrXII:605139-605658 2.47e-06 63_[-2(1.01e-09)]_16 chrIV:305600-310235 3.68e-01 100 chrXVI:377862-378497 3.67e-01 100 chrXV:216245-216670 2.78e-01 100 chrXI:645303-645752 8.22e-01 100 chrXIII:183752-184175 7.63e-05 34_[-2(6.79e-09)]_45 chrIV:1269875-1271087 6.04e-01 100 chrVII:345821-346761 6.23e-01 100 chrIII:6-1333 6.61e-01 100 chrXII:656696-657187 1.28e-05 50_[-1(2.54e-09)]_29 chrV:135148-135689 4.47e-08 25_[-3(1.80e-05)]_18_[-1(3.54e-10)]_\ 15 chrVIII:384825-386974 8.97e-01 100 chrIII:78334-78764 3.94e-03 8_[+3(1.21e-06)]_71 chrV:151615-153078 2.76e-01 100 chrXVI:435630-436202 1.43e-09 34_[-1(2.31e-08)]_22_[-2(1.84e-08)]_\ 2 chrXI:458367-459019 6.40e-02 28_[-3(3.99e-05)]_51 chrXV:159210-160774 3.82e-01 100 chrXIII:159286-160186 2.02e-02 16_[-3(6.24e-06)]_15_[-3(6.20e-05)]_\ 27 chrVII:939044-939768 1.88e-02 77_[+3(4.25e-06)]_2 chrXII:86891-87174 6.98e-01 100 chrVII:436704-438434 1.63e-03 57_[-3(7.65e-07)]_22 chrVIII:132791-133830 2.50e-01 100 chrXV:758985-759671 9.78e-01 100 chrIV:1488831-1490410 3.16e-01 100 chrVII:328310-329035 7.40e-07 3_[+1(1.75e-10)]_76 chrXIII:748394-748647 3.52e-01 100 chrVII:363826-364469 1.60e-04 44_[-3(1.87e-08)]_35 chrX:607863-607963 5.31e-04 7_[-3(4.35e-08)]_72 chrVII:609251-610135 3.04e-03 77_[+3(4.72e-07)]_2 chrX:617766-617866 7.45e-05 8_[+2(1.84e-08)]_71 chrV:438331-438991 6.11e-01 100 chrXV:832224-832858 4.03e-02 62_[-3(1.28e-05)]_17 chrII:376108-378609 9.37e-01 100 chrI:166020-166660 9.34e-07 20_[+1(8.33e-11)]_59 chrXVI:730856-731332 6.74e-01 100 chrIV:1359180-1361248 4.54e-01 100 chrIV:1492167-1493122 6.02e-02 7_[-1(4.78e-05)]_72 chrXIV:442750-444784 5.66e-01 100 chrVII:919588-920205 2.45e-01 100 chrII:256207-257245 2.55e-01 100 chrXIII:253323-253639 2.77e-01 100 chrII:237669-238849 4.96e-01 100 chrV:250110-251448 8.32e-01 100 chrVIII:237466-238134 3.38e-02 100 chrX:204456-204556 1.04e-02 58_[+2(3.88e-06)]_21 chrV:491046-491463 2.57e-01 100 chrIV:83335-83826 6.93e-13 17_[+2(6.79e-09)]_21_[+1(6.82e-12)]_\ 20 chrVI:221739-222043 1.41e-03 34_[+3(2.84e-07)]_45 chrVII:398332-401766 7.76e-01 100 chrXIV:96029-96589 5.86e-05 32_[-2(3.59e-09)]_3_[+2(2.32e-05)]_\ 23 chrXII:867494-868798 9.97e-01 100 chrVII:535469-535790 5.76e-03 72_[-3(1.68e-06)]_7 chrXIII:168602-169354 7.86e-01 100 chrXI:490731-491466 8.83e-02 5_[-3(2.93e-05)]_74 chrVII:845377-845954 6.05e-13 33_[+2(6.79e-09)]_21_[+1(6.82e-12)]_\ 4 chrXVI:404508-407873 8.13e-02 46_[+3(2.50e-05)]_33 chrVII:986836-987651 3.77e-01 100 chrVIII:16830-17399 4.58e-01 100 chrV:117606-118292 9.53e-01 100 chrIV:358092-358412 1.95e-01 69_[-3(9.42e-05)]_10 chrIX:248628-249407 8.72e-01 100 chrXV:6-997 2.22e-01 100 chrVI:210438-210917 1.67e-01 100 chrVIII:410748-412061 3.67e-01 100 chrIV:1080483-1080990 5.24e-01 100 chrVII:227461-228398 8.55e-01 100 chrII:167142-169718 1.89e-01 100 chrIX:254252-254523 6.10e-01 100 chrV:269072-270245 2.88e-01 100 chrXVI:520129-520521 6.62e-01 100 chrVIII:455650-456024 9.40e-02 57_[+3(7.15e-05)]_22 chrII:45572-46708 2.65e-01 100 chrVIII:145935-146454 7.06e-01 100 chrIV:555343-556680 4.00e-02 100 chrII:332340-334288 3.69e-01 100 chrVIII:85109-85514 6.21e-11 9_[+3(1.08e-08)]_14_[-1(7.75e-10)]_\ 35 chrXVI:689280-689881 1.27e-04 34_[+2(1.84e-08)]_45 chrX:396565-396665 4.11e-05 37_[-2(6.79e-09)]_42 chrXIII:5327-5764 9.74e-01 100 chrIV:1256888-1257301 1.49e-04 14_[-2(2.38e-08)]_65 chrII:350582-351148 3.54e-10 11_[+2(9.46e-08)]_22_[+1(5.26e-10)]_\ 25 chrXIII:849708-850674 6.10e-01 100 chrII:444772-445025 8.82e-02 70_[-2(8.86e-05)]_9 chrXV:161130-161484 1.36e-01 100 chrV:487148-487669 3.35e-02 23_[-2(2.67e-05)]_56 chrXV:841679-842980 5.54e-01 100 chrII:452856-453725 6.34e-03 71_[+3(6.24e-06)]_8 chrX:651865-651965 9.22e-01 100 chrXV:258937-259979 4.97e-02 100 chrIII:292679-292970 8.31e-01 100 chrXIV:23831-26599 5.76e-01 100 chrXIV:88188-90021 1.07e-02 100 chrVIII:505828-506189 9.12e-01 100 chrVIII:358221-358764 4.69e-04 43_[-1(5.05e-08)]_36 chrXII:460195-460696 1.42e-02 52_[+2(7.01e-05)]_27 chrVII:706869-707334 1.75e-05 64_[-1(2.31e-08)]_15 chrIV:220575-220753 2.91e-01 100 chrIX:213284-213731 9.54e-01 100 chrIX:322149-324610 4.29e-01 100 chrIII:168924-169254 7.09e-01 100 chrXIII:91690-92114 1.35e-01 56_[+3(8.21e-05)]_23 chrII:197239-197871 2.83e-07 33_[+1(7.12e-11)]_46 chrIV:915102-916708 2.19e-01 100 chrXV:287796-288414 6.65e-02 57_[+1(4.46e-05)]_22 chrXII:262692-264325 2.85e-01 100 chrXVI:378661-378994 4.14e-01 100 chrXII:817346-820580 3.73e-02 100 chrXI:558662-559525 1.41e-01 77_[-2(6.56e-05)]_2 chrXV:79461-80134 7.71e-01 100 chrX:390795-390895 8.34e-05 5_[+3(8.21e-05)]_16_[-1(3.77e-07)]_\ 37 chrIV:1301534-1302955 8.77e-03 18_[-3(5.16e-06)]_61 chrXII:546015-547961 3.48e-01 100 chrIV:437546-438040 4.35e-05 28_[+2(5.82e-09)]_51 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************