******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MOT1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:391806-395505 1.0000 100 chrVIII:125883-127843 1.0000 100 chrXV:21500-22419 1.0000 100 chrVI:233546-233998 1.0000 100 chrXI:158198-159610 1.0000 100 chrI:138862-139384 1.0000 100 chrIV:1236138-1238919 1.0000 100 chrXVI:810414-810912 1.0000 100 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chrII:167277-169778 1.0000 100 chrXV:710006-710635 1.0000 100 chrVII:436731-442077 1.0000 100 chrXII:793709-797445 1.0000 100 chrIII:82370-82837 1.0000 100 chrVII:962093-962394 1.0000 100 chrXV:514549-515342 1.0000 100 chrIX:323923-324702 1.0000 100 chrXV:438421-439402 1.0000 100 chrXI:46218-47160 1.0000 100 chrIV:1354418-1356055 1.0000 100 chrVI:63944-65391 1.0000 100 chrXI:379463-379950 1.0000 100 chrVII:422829-423625 1.0000 100 chrXV:762047-762504 1.0000 100 chrXI:333629-335355 1.0000 100 chrII:59454-61245 1.0000 100 chrV:53156-54402 1.0000 100 chrV:292741-293094 1.0000 100 chrXIII:305924-306242 1.0000 100 chrII:595288-595943 1.0000 100 chrXIV:186826-187635 1.0000 100 chrIV:83301-83836 1.0000 100 chrXV:444435-446256 1.0000 100 chrIV:1468073-1469202 1.0000 100 chrXVI:277330-278019 1.0000 100 chrII:234435-238170 1.0000 100 chrIV:217108-218068 1.0000 100 chrIV:1434387-1435127 1.0000 100 chrXV:741730-742997 1.0000 100 chrXIV:23380-26529 1.0000 100 chrXIV:228774-231046 1.0000 100 chrXV:866558-868387 1.0000 100 chrXV:522149-523034 1.0000 100 chrV:176888-177837 1.0000 100 chrVII:541595-542171 1.0000 100 chrVII:319604-320163 1.0000 100 chrIV:411206-411706 1.0000 100 chrVIII:488205-488675 1.0000 100 chrIX:137343-139773 1.0000 100 chrVII:544348-546300 1.0000 100 chrVII:555095-558198 1.0000 100 chrIV:1242088-1243334 1.0000 100 chrXVI:866508-866724 1.0000 100 chrV:491658-492564 1.0000 100 chrV:522592-523100 1.0000 100 chrV:321872-323385 1.0000 100 chrX:704060-704160 1.0000 100 chrXI:578771-579323 1.0000 100 chrXIII:861025-861527 1.0000 100 chrX:391889-391989 1.0000 100 chrIX:68176-69899 1.0000 100 chrII:291871-292230 1.0000 100 chrXIV:374648-375253 1.0000 100 chrXI:219278-220707 1.0000 100 chrII:604154-607674 1.0000 100 chrIV:1352357-1352740 1.0000 100 chrXII:231943-234972 1.0000 100 chrIX:386458-387044 1.0000 100 chrII:21230-21625 1.0000 100 chrXII:1071544-1071784 1.0000 100 chrII:299826-300261 1.0000 100 chrVII:823253-824034 1.0000 100 chrXII:11073-11951 1.0000 100 chrVI:164421-165105 1.0000 100 chrII:477118-477823 1.0000 100 chrIX:299979-300494 1.0000 100 chrXV:81315-83530 1.0000 100 chrIV:884161-884735 1.0000 100 chrX:662923-663023 1.0000 100 chrVIII:374954-375878 1.0000 100 chrIV:1441116-1442272 1.0000 100 chrXV:853910-854435 1.0000 100 chrII:613124-615289 1.0000 100 chrXIV:241407-241685 1.0000 100 chrXVI:204962-205262 1.0000 100 chrXIII:650751-654111 1.0000 100 chrVII:960308-961594 1.0000 100 chrXI:325903-328172 1.0000 100 chrXI:608361-608776 1.0000 100 chrIV:132589-133425 1.0000 100 chrIII:168855-169834 1.0000 100 chrIV:1201488-1202559 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MOT1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MOT1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MOT1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.308 C 0.192 G 0.192 T 0.308 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MOT1/background): A 0.313 C 0.187 G 0.187 T 0.313 ******************************************************************************** ******************************************************************************** MOTIF DSYSRGRATCGAACCSRSGAC MEME-1 width = 21 sites = 69 llr = 1098 E-value = 1.3e-174 ******************************************************************************** -------------------------------------------------------------------------------- Motif DSYSRGRATCGAACCSRSGAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 32:13:65:::aa:113:16: pos.-specific C :554:::1:7:::a6523:26 probability G 43256a41::a::::345911 matrix T 3:3:1::2a3::::31:2:12 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * * ** * * Relative 1.5 * ****** * Entropy 1.2 * ****** * (23.0 bits) 1.0 ** ****** * * 0.7 * **** ******* ** * 0.5 ******* *********** * 0.2 ********************* 0.0 --------------------- Multilevel GCCGGGAATCGAACCCGGGAC consensus AGTCA GT T TGAC CT sequence TAG C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSYSRGRATCGAACCSRSGAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXV:594076-594668 + 39 1.25e-13 AGATGCGCAA GCCGGGAATCGAACCCGGGCC TCATGCTTGG chrIV:1256816-1257278 + 18 1.25e-13 AAATGCGGAA GCCGGGAATCGAACCCGGGCC CCATGCTTGG chrIV:83301-83836 - 73 1.50e-11 TGCGCAA GCCCGGAATCGAACCGGGGGC CCAACGATGG chrXIII:183737-184163 + 5 1.50e-11 GCAA GCCCGGAATCGAACCGGGGGC CCAACGATGG chrX:531530-531630 - 44 1.50e-11 AACTGCGCAA GCCCGGAATCGAACCGGGGGC CCAACGATGG chrXI:379463-379950 - 70 6.62e-11 AATTGATTTC GCCCAGGATCGAACTGGGGAC GTTCTGCGTG chrXII:687633-688090 + 55 6.62e-11 AAATGATTTC GCCCAGGATCGAACTGGGGAC GTTCTGCGTG chrXI:307939-308448 + 8 6.62e-11 TGATTTC GCCCAGGATCGAACTGGGGAC GTTCTGCGTG chrXIII:420269-420906 + 58 6.62e-11 AAATGATTTC GCCCAGGATCGAACTGGGGAC GTTCTGCGTG chrIV:1075169-1075798 + 46 6.62e-11 AAATGTTCCA ACCGAGGATCGAACTCGGGAC CTTTGCCGTG chrV:469270-469810 - 13 6.62e-11 AAATGATTTC GCCCAGGATCGAACTGGGGAC GTTCTGCGTG chrVII:412064-412595 + 22 6.62e-11 ACTTGATTTC GCCCAGGATCGAACTGGGGAC GTTCTGCGTG chrIV:1016926-1017552 + 25 2.86e-10 AAACTCCGAA GCGGGGAGTCGAACCCCGGTC TCCACGGTGA chrVII:541595-542171 - 61 7.55e-10 ACACTCCGAT ACGGGGAGTCGAACCCCGGTC TCCACGGTGA chrV:487119-487571 + 43 7.55e-10 ATACTCCGAT ACGGGGAGTCGAACCCCGGTC TCCACGGTGA chrXV:853910-854435 + 72 1.37e-09 AATTGGACGC AACCGGAATCGAACCGATGAC CTCTTCCT chrXII:214668-215180 + 16 1.37e-09 AAATGGACGC AACCGGAATCGAACCGATGAC CTCTTCCTTG chrXV:980495-981098 - 14 1.37e-09 AAAGGGGCGA GCTGGGAATTGAACCCAGGGC CTCTCGCATG chrXII:92306-92891 - 75 1.37e-09 GGCGA GCTGGGAATTGAACCCAGGGC CTCTCGCATG chrVII:794164-794722 - 69 1.37e-09 ATATGGACGC AACCGGAATCGAACCGATGAC CTCTTCCTTG chrIV:884161-884735 - 68 1.58e-09 AAGTGCTCGA GGTGGGGTTTGAACCCACGAC GGTCGCGTTG chrIII:168058-168628 + 15 1.82e-09 AAAAGGTCCT ACCCGGATTCGAACCGGGGTT GTCCGGATCA chrIV:644921-645377 + 61 1.82e-09 AAAAGGTCCT ACCCGGATTCGAACCGGGGTT GTCCGGATCA chrXIII:667092-667640 + 14 5.22e-09 TTACGCTCCA GGGCAGAATCGAACCACGGCC CTCGTATAAG chrXI:578771-579323 - 36 7.53e-09 GAACTCCTCA TAGGGGGCTCGAACCCCTGAC ATTTCGGTAT chrXVI:435559-436210 + 66 1.50e-08 GAAAGCTCGC ACTCAGGATCGAACTAAGGAC CAACAGATTT chrII:642878-643227 + 12 1.50e-08 AGAAGCTCGC ACTCAGGATCGAACTAAGGAC CAACAGATTT chrII:347379-347909 - 65 1.86e-08 TACTGAAGGA TGCGAGGTTCGAACTCGCGCG GACAACCGTC chrIV:519541-520155 - 1 1.86e-08 TATTGAAGGA TGCGAGGTTCGAACTCGCGCG chrXIV:725884-726386 + 56 1.86e-08 TACTGAAGGA TGCGAGGTTCGAACTCGCGCG GACAACCGTC chrII:9368-9920 - 45 1.86e-08 TACTGAAGGA TGCGAGGTTCGAACTCGCGCG GACAACCGTC chrIX:323923-324702 + 48 2.30e-08 AATCTCCGCG ACGGGGAATTGAACCCCGATC TGGCACGCGA chrXIII:463264-463939 - 47 2.30e-08 AATCTCCGCG ACGGGGAATTGAACCCCGATC TGGCACGCGA chrX:355114-355214 - 75 2.30e-08 CCGCG ACGGGGAATTGAACCCCGATC TGGCACGCGA chrX:541344-541444 - 43 2.30e-08 AATCTCCGCG ACGGGGAATTGAACCCCGATC TGGCACGCGA chrXVI:819204-819888 - 79 2.55e-08 C TAGCGGGATCGAACCGCTGAT CCCCGCGTTA chrXIV:374648-375253 - 32 3.13e-08 AATTGCGAAC TCTGTGGATCGAACACAGGAC CTCCAGATGA chrIV:1094970-1095728 + 78 3.13e-08 AAATGCGAAC TCTGTGGATCGAACACAGGAC CT chrVIII:237615-238124 + 36 3.13e-08 AAATGCGAAT TCTGTGGATCGAACACAGGAC CTCCAGATAA chrXVI:622237-622805 + 76 3.13e-08 AAATGCGAAT TCTGTGGATCGAACACAGGAC CTCC chrXVI:559895-560503 + 56 3.13e-08 AAATGCGAAT TCTGTGGATCGAACACAGGAC CTCCAGATAA chrVIII:466737-467337 - 47 3.82e-08 TAATGCCACC TGCCAGAATTGAACTAGCGAC CTTTGCATTA chrX:390766-390866 + 75 5.60e-08 ATATGCTCCA GGGGAGGTTCGAACTCTCGAC CTTCA chrIX:299979-300494 + 49 6.73e-08 GATAGCCCTG TAGGGGGCTCGAACCCCTAAC CTTATGATTA chrV:135100-135715 + 75 6.73e-08 GAAAGCCCTG TAGGGGGCTCGAACCCCTAAC CTTAT chrXIII:768071-768648 + 67 8.06e-08 ATTTGGACGA GTCCGGAATCGAACCGGAGAC CTCTCCCATG chrIV:437486-438221 - 23 1.14e-07 TGACGACAAC TGCAGGACTCGAACCTGCGCG GGCAAAGCCC chrXIII:258871-259527 + 16 1.14e-07 TAACGACAAC TGCAGGACTCGAACCTGCGCG GGCAAAGCCC chrI:182319-182765 + 37 1.14e-07 TAACGACAAC TGCAGGACTCGAACCTGCGCG GGCAAAGCCC chrIV:568621-569212 - 60 1.24e-07 AAGCACTCAC GATGGGGGTCGAACCCATAAT CTTCTGATTA chrXI:302555-303487 - 25 1.72e-07 AAATGAAACG GACAGGAATTGAACCTGCAAC CCTTCGATTG chrXIV:102475-103133 - 8 1.72e-07 AAACGACCCC AGTGAGGGTTGAACTCACGAT CTTGCGA chrXVI:743819-744782 - 78 1.72e-07 CC TGTCAGAATTGAACTAACGAC CTTTGCATTA chrXIV:632387-632911 - 46 1.72e-07 AAACGACCCC AGTGAGGGTTGAACTCACGAT CTTGCGATTA chrXII:975721-976278 + 41 1.72e-07 AAACGACCCC AGTGAGGGTTGAACTCACGAT CTTGCGATTA chrXVI:689310-689977 - 26 2.02e-07 ATACGACACC AGCAGGATTTGAACCAGCGCG GGCAGAGCCC chrIII:227755-228298 - 39 2.02e-07 AAACGACACC AGCAGGATTTGAACCAGCGCG GGCAGAGCCC chrIX:325518-326145 - 12 2.02e-07 AATTGCTTCC AATCGGATTTGAACCGATGAT CTCCACATTA chrIV:434001-434543 + 49 2.02e-07 ATATGCTTCC AATCGGATTTGAACCGATGAT CTCCACATTA chrII:266122-266681 - 72 2.02e-07 ATGCTTCC AATCGGATTTGAACCGATGAT CTCCACATTA chrIX:174832-175371 - 25 2.02e-07 AATTGCTTCC AATCGGATTTGAACCGATGAT CTCCACATTA chrXII:374222-374657 - 11 3.18e-07 AATCTTCCCC GCCAGGACTTGAACCTGGAAT CTTCTGGTTC chrIV:946168-946637 - 21 3.68e-07 AAATCTCCCG GGGGCGAGTCGAACGCCCGAT CTCAAGATTT chrXV:287973-288611 - 11 3.68e-07 ATATCTCCCG GGGGCGAGTCGAACGCCCGAT CTCAAGATTT chrV:434378-434757 + 31 4.24e-07 AAATGCCATC TCCTAGAATCGAACCAGGGTT TCATCGGCCA chrX:517565-517665 + 33 5.22e-07 GCTTAGCGCC GCTCGGTTTCGATCCGAGGAC ATCAGGGTTA chrXII:784178-784744 - 15 6.81e-07 AAGCGTCACA GACAGGATTCGAACCTGCGCA GGTAAAACCC chrIV:768779-769513 + 52 1.51e-06 TTATATTTAT ACAGGGAATCGAACAGACACT TGTCAGCGTA chrXIII:408167-409138 + 24 2.22e-06 CGTACGCGGC GGCGCGACTCGAATCCTTGAC TCCGACTGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSYSRGRATCGAACCSRSGAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:594076-594668 1.3e-13 38_[+1]_41 chrIV:1256816-1257278 1.3e-13 17_[+1]_62 chrIV:83301-83836 1.5e-11 72_[-1]_7 chrXIII:183737-184163 1.5e-11 4_[+1]_75 chrX:531530-531630 1.5e-11 43_[-1]_36 chrXI:379463-379950 6.6e-11 69_[-1]_10 chrXII:687633-688090 6.6e-11 54_[+1]_25 chrXI:307939-308448 6.6e-11 7_[+1]_72 chrXIII:420269-420906 6.6e-11 57_[+1]_22 chrIV:1075169-1075798 6.6e-11 45_[+1]_34 chrV:469270-469810 6.6e-11 12_[-1]_67 chrVII:412064-412595 6.6e-11 21_[+1]_58 chrIV:1016926-1017552 2.9e-10 24_[+1]_55 chrVII:541595-542171 7.5e-10 60_[-1]_19 chrV:487119-487571 7.5e-10 42_[+1]_37 chrXV:853910-854435 1.4e-09 71_[+1]_8 chrXII:214668-215180 1.4e-09 15_[+1]_64 chrXV:980495-981098 1.4e-09 13_[-1]_66 chrXII:92306-92891 1.4e-09 74_[-1]_5 chrVII:794164-794722 1.4e-09 68_[-1]_11 chrIV:884161-884735 1.6e-09 67_[-1]_12 chrIII:168058-168628 1.8e-09 14_[+1]_65 chrIV:644921-645377 1.8e-09 60_[+1]_19 chrXIII:667092-667640 5.2e-09 13_[+1]_66 chrXI:578771-579323 7.5e-09 35_[-1]_44 chrXVI:435559-436210 1.5e-08 65_[+1]_14 chrII:642878-643227 1.5e-08 11_[+1]_68 chrII:347379-347909 1.9e-08 64_[-1]_15 chrIV:519541-520155 1.9e-08 [-1]_79 chrXIV:725884-726386 1.9e-08 55_[+1]_24 chrII:9368-9920 1.9e-08 44_[-1]_35 chrIX:323923-324702 2.3e-08 47_[+1]_32 chrXIII:463264-463939 2.3e-08 46_[-1]_33 chrX:355114-355214 2.3e-08 74_[-1]_5 chrX:541344-541444 2.3e-08 42_[-1]_37 chrXVI:819204-819888 2.6e-08 78_[-1]_1 chrXIV:374648-375253 3.1e-08 31_[-1]_48 chrIV:1094970-1095728 3.1e-08 77_[+1]_2 chrVIII:237615-238124 3.1e-08 35_[+1]_44 chrXVI:622237-622805 3.1e-08 75_[+1]_4 chrXVI:559895-560503 3.1e-08 55_[+1]_24 chrVIII:466737-467337 3.8e-08 46_[-1]_33 chrX:390766-390866 5.6e-08 74_[+1]_5 chrIX:299979-300494 6.7e-08 48_[+1]_31 chrV:135100-135715 6.7e-08 74_[+1]_5 chrXIII:768071-768648 8.1e-08 66_[+1]_13 chrIV:437486-438221 1.1e-07 22_[-1]_57 chrXIII:258871-259527 1.1e-07 15_[+1]_64 chrI:182319-182765 1.1e-07 36_[+1]_43 chrIV:568621-569212 1.2e-07 59_[-1]_20 chrXI:302555-303487 1.7e-07 24_[-1]_55 chrXIV:102475-103133 1.7e-07 7_[-1]_72 chrXVI:743819-744782 1.7e-07 77_[-1]_2 chrXIV:632387-632911 1.7e-07 45_[-1]_34 chrXII:975721-976278 1.7e-07 40_[+1]_39 chrXVI:689310-689977 2e-07 25_[-1]_54 chrIII:227755-228298 2e-07 38_[-1]_41 chrIX:325518-326145 2e-07 11_[-1]_68 chrIV:434001-434543 2e-07 48_[+1]_31 chrII:266122-266681 2e-07 71_[-1]_8 chrIX:174832-175371 2e-07 24_[-1]_55 chrXII:374222-374657 3.2e-07 10_[-1]_69 chrIV:946168-946637 3.7e-07 20_[-1]_59 chrXV:287973-288611 3.7e-07 10_[-1]_69 chrV:434378-434757 4.2e-07 30_[+1]_49 chrX:517565-517665 5.2e-07 32_[+1]_47 chrXII:784178-784744 6.8e-07 14_[-1]_65 chrIV:768779-769513 1.5e-06 51_[+1]_28 chrXIII:408167-409138 2.2e-06 23_[+1]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSYSRGRATCGAACCSRSGAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DSYSRGRATCGAACCSRSGAC width=21 seqs=69 chrXV:594076-594668 ( 39) GCCGGGAATCGAACCCGGGCC 1 chrIV:1256816-1257278 ( 18) GCCGGGAATCGAACCCGGGCC 1 chrIV:83301-83836 ( 73) GCCCGGAATCGAACCGGGGGC 1 chrXIII:183737-184163 ( 5) GCCCGGAATCGAACCGGGGGC 1 chrX:531530-531630 ( 44) GCCCGGAATCGAACCGGGGGC 1 chrXI:379463-379950 ( 70) GCCCAGGATCGAACTGGGGAC 1 chrXII:687633-688090 ( 55) GCCCAGGATCGAACTGGGGAC 1 chrXI:307939-308448 ( 8) GCCCAGGATCGAACTGGGGAC 1 chrXIII:420269-420906 ( 58) GCCCAGGATCGAACTGGGGAC 1 chrIV:1075169-1075798 ( 46) ACCGAGGATCGAACTCGGGAC 1 chrV:469270-469810 ( 13) GCCCAGGATCGAACTGGGGAC 1 chrVII:412064-412595 ( 22) GCCCAGGATCGAACTGGGGAC 1 chrIV:1016926-1017552 ( 25) GCGGGGAGTCGAACCCCGGTC 1 chrVII:541595-542171 ( 61) ACGGGGAGTCGAACCCCGGTC 1 chrV:487119-487571 ( 43) ACGGGGAGTCGAACCCCGGTC 1 chrXV:853910-854435 ( 72) AACCGGAATCGAACCGATGAC 1 chrXII:214668-215180 ( 16) AACCGGAATCGAACCGATGAC 1 chrXV:980495-981098 ( 14) GCTGGGAATTGAACCCAGGGC 1 chrXII:92306-92891 ( 75) GCTGGGAATTGAACCCAGGGC 1 chrVII:794164-794722 ( 69) AACCGGAATCGAACCGATGAC 1 chrIV:884161-884735 ( 68) GGTGGGGTTTGAACCCACGAC 1 chrIII:168058-168628 ( 15) ACCCGGATTCGAACCGGGGTT 1 chrIV:644921-645377 ( 61) ACCCGGATTCGAACCGGGGTT 1 chrXIII:667092-667640 ( 14) GGGCAGAATCGAACCACGGCC 1 chrXI:578771-579323 ( 36) TAGGGGGCTCGAACCCCTGAC 1 chrXVI:435559-436210 ( 66) ACTCAGGATCGAACTAAGGAC 1 chrII:642878-643227 ( 12) ACTCAGGATCGAACTAAGGAC 1 chrII:347379-347909 ( 65) TGCGAGGTTCGAACTCGCGCG 1 chrIV:519541-520155 ( 1) TGCGAGGTTCGAACTCGCGCG 1 chrXIV:725884-726386 ( 56) TGCGAGGTTCGAACTCGCGCG 1 chrII:9368-9920 ( 45) TGCGAGGTTCGAACTCGCGCG 1 chrIX:323923-324702 ( 48) ACGGGGAATTGAACCCCGATC 1 chrXIII:463264-463939 ( 47) ACGGGGAATTGAACCCCGATC 1 chrX:355114-355214 ( 75) ACGGGGAATTGAACCCCGATC 1 chrX:541344-541444 ( 43) ACGGGGAATTGAACCCCGATC 1 chrXVI:819204-819888 ( 79) TAGCGGGATCGAACCGCTGAT 1 chrXIV:374648-375253 ( 32) TCTGTGGATCGAACACAGGAC 1 chrIV:1094970-1095728 ( 78) TCTGTGGATCGAACACAGGAC 1 chrVIII:237615-238124 ( 36) TCTGTGGATCGAACACAGGAC 1 chrXVI:622237-622805 ( 76) TCTGTGGATCGAACACAGGAC 1 chrXVI:559895-560503 ( 56) TCTGTGGATCGAACACAGGAC 1 chrVIII:466737-467337 ( 47) TGCCAGAATTGAACTAGCGAC 1 chrX:390766-390866 ( 75) GGGGAGGTTCGAACTCTCGAC 1 chrIX:299979-300494 ( 49) TAGGGGGCTCGAACCCCTAAC 1 chrV:135100-135715 ( 75) TAGGGGGCTCGAACCCCTAAC 1 chrXIII:768071-768648 ( 67) GTCCGGAATCGAACCGGAGAC 1 chrIV:437486-438221 ( 23) TGCAGGACTCGAACCTGCGCG 1 chrXIII:258871-259527 ( 16) TGCAGGACTCGAACCTGCGCG 1 chrI:182319-182765 ( 37) TGCAGGACTCGAACCTGCGCG 1 chrIV:568621-569212 ( 60) GATGGGGGTCGAACCCATAAT 1 chrXI:302555-303487 ( 25) GACAGGAATTGAACCTGCAAC 1 chrXIV:102475-103133 ( 8) AGTGAGGGTTGAACTCACGAT 1 chrXVI:743819-744782 ( 78) TGTCAGAATTGAACTAACGAC 1 chrXIV:632387-632911 ( 46) AGTGAGGGTTGAACTCACGAT 1 chrXII:975721-976278 ( 41) AGTGAGGGTTGAACTCACGAT 1 chrXVI:689310-689977 ( 26) AGCAGGATTTGAACCAGCGCG 1 chrIII:227755-228298 ( 39) AGCAGGATTTGAACCAGCGCG 1 chrIX:325518-326145 ( 12) AATCGGATTTGAACCGATGAT 1 chrIV:434001-434543 ( 49) AATCGGATTTGAACCGATGAT 1 chrII:266122-266681 ( 72) AATCGGATTTGAACCGATGAT 1 chrIX:174832-175371 ( 25) AATCGGATTTGAACCGATGAT 1 chrXII:374222-374657 ( 11) GCCAGGACTTGAACCTGGAAT 1 chrIV:946168-946637 ( 21) GGGGCGAGTCGAACGCCCGAT 1 chrXV:287973-288611 ( 11) GGGGCGAGTCGAACGCCCGAT 1 chrV:434378-434757 ( 31) TCCTAGAATCGAACCAGGGTT 1 chrX:517565-517665 ( 33) GCTCGGTTTCGATCCGAGGAC 1 chrXII:784178-784744 ( 15) GACAGGATTCGAACCTGCGCA 1 chrIV:768779-769513 ( 52) ACAGGGAATCGAACAGACACT 1 chrXIII:408167-409138 ( 24) GGCGCGACTCGAATCCTTGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSYSRGRATCGAACCSRSGAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.8166 E= 1.3e-174 15 -1275 101 -19 -63 140 63 -443 -443 136 22 -11 -143 101 140 -443 -4 -210 163 -211 -1275 -1275 242 -1275 89 -1275 112 -443 74 -69 -52 -43 -1275 -1275 -1275 167 -1275 193 -1275 -11 -1275 -1275 242 -1275 167 -1275 -1275 -1275 165 -1275 -1275 -443 -1275 240 -1275 -443 -185 170 -269 -19 -143 136 77 -185 15 12 117 -343 -443 70 140 -73 -111 -1275 219 -1275 89 12 -137 -111 -443 174 -52 -43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSYSRGRATCGAACCSRSGAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 69 E= 1.3e-174 0.347826 0.000000 0.376812 0.275362 0.202899 0.492754 0.289855 0.014493 0.014493 0.478261 0.217391 0.289855 0.115942 0.376812 0.492754 0.014493 0.304348 0.043478 0.579710 0.072464 0.000000 0.000000 1.000000 0.000000 0.579710 0.000000 0.405797 0.014493 0.521739 0.115942 0.130435 0.231884 0.000000 0.000000 0.000000 1.000000 0.000000 0.710145 0.000000 0.289855 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.985507 0.000000 0.000000 0.014493 0.000000 0.985507 0.000000 0.014493 0.086957 0.608696 0.028986 0.275362 0.115942 0.478261 0.318841 0.086957 0.347826 0.202899 0.420290 0.028986 0.014493 0.304348 0.492754 0.188406 0.144928 0.000000 0.855072 0.000000 0.579710 0.202899 0.072464 0.144928 0.014493 0.623188 0.130435 0.231884 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DSYSRGRATCGAACCSRSGAC MEME-1 regular expression -------------------------------------------------------------------------------- [GAT][CGA][CTG][GC][GA]G[AG][AT]T[CT]GAAC[CT][CG][GAC][GC]G[AC][CT] -------------------------------------------------------------------------------- Time 353.42 secs. ******************************************************************************** ******************************************************************************** MOTIF RAARAAAAAAAAAAA MEME-2 width = 15 sites = 112 llr = 1141 E-value = 7.6e-074 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAARAAAAAAAAAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 57769979a779888 pos.-specific C ::2:::::::1:::1 probability G 53131131:131122 matrix T :::1:::1:2::1:: bits 2.4 2.2 1.9 1.7 * Relative 1.5 * * Entropy 1.2 ** * * (14.7 bits) 1.0 ** ***** *** 0.7 *** *********** 0.5 *************** 0.2 *************** 0.0 --------------- Multilevel GAAAAAAAAAAAAAA consensus AGCG G TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAARAAAAAAAAAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrII:299826-300261 + 40 1.62e-08 TTTTCAATCT GAAAAAAAAAAAAAA AAAAAAAAAA chrX:58669-58769 + 43 1.62e-08 TCAAGAGCGT GAAAAAAAAAAAAAA AAAAAAATTA chrV:225165-225714 + 8 2.59e-08 GGTGAAC GAAGAAAAAAAAAAA GAAAAAAATT chrXI:517765-521053 + 5 2.59e-08 CTAA GAAGAAAAAAAAAAA AGTACGACCA chrII:372457-379251 - 70 4.52e-08 TCTTCAGCGA GAAAAAGAAAAAAAA TTTCAGGGTG chrXVI:452878-454142 + 3 4.52e-08 AA GAAAAAAAAAGAAAA AGATGGCTTA chrXI:549367-549653 - 6 4.52e-08 AATTTTCGAA GAAAAAAAAAGAAAA TTCAA chrVIII:374954-375878 + 37 9.94e-08 AAGTTGAAGA GGAGAAAAAAAAAAA GAGAGAGCCG chrXII:734704-735158 - 43 9.94e-08 AACGAGGATT AAAAAAAAAAAAAAA TTAAGTAATA chrVIII:85020-85494 + 63 1.21e-07 ACATTTTTCT AAAGAAAAAAAAAAA ATTCAAAAAA chrXII:704195-704662 - 74 1.21e-07 ATGGAGGAGA AAAGAAAAAAAAAAA TGAAAAAAAA chrXIII:411069-411660 - 67 1.21e-07 AAAAAAGGCA AAAGAAAAAAAAAAA AGAAAAAAGG chrX:570507-570607 - 12 1.21e-07 ACCACGCAAG AAAGAAAAAAAAAAA CATGTCTACT chrVII:574617-575884 - 53 1.46e-07 GTGGAAAAGA GGAAAAGAAAAAAAA ATACGAAAAC chrIV:1242088-1243334 - 21 1.91e-07 TCTGGTAAAA AAAAAAGAAAAAAAA GGAAGGAATT chrXIV:88605-90052 - 41 1.91e-07 TGTGAGAGAA AAAAAAAAAAGAAAA TAAAGGAAAA chrXV:514549-515342 + 31 2.77e-07 AAAAAAGCAC GAAGAAAAAAAAAGA AACCAAAAAT chrIV:644921-645377 + 3 2.77e-07 CT GAAAAAAAAAAAAAG TAACTGATGG chrX:538365-538465 - 30 4.48e-07 TCTATAAAGA AACGAAAAAAAAAAA ATAATCAACG chrVII:363912-364462 - 12 4.48e-07 GAACCTATAT AACGAAAAAAAAAAA AATGAAAACT chrXVI:188594-189068 - 50 4.48e-07 CAGGGTTCAT AACGAAAAAAAAAAA ATCGTAAGTA chrVII:706693-707323 + 84 5.04e-07 AATGAGGCCC AAAAAAAAAAAAAGA AC chrXI:302555-303487 - 53 5.04e-07 CTAAATGTAT GGCAAAAAAAGAAAA TGAAACGGAC chrX:390766-390866 + 15 6.01e-07 GCTACGAAAA AACAAAGAAAAAAAA AACAAAATAG chrXVI:699939-700724 + 54 7.18e-07 CTAAAGGTTT GGAAAAGAAAAAAGA GACCGCCTCG chrX:154593-154693 + 74 8.40e-07 TATGATGCTG AAAAAAAAATAAAAA AATTTCGAAA chrXIV:575987-577360 - 10 8.40e-07 GAATAAATTA AGCGAAAAAAAAAAA ATCTCTTTC chrXII:11-229 + 66 1.31e-06 ACCGAAATTA AAAAAAAAATGAAAA TGAAACCCTG chrXVI:879965-880547 + 69 1.31e-06 TCTCTTTCGA GAAAAAGAAAGAGAA AAGAAATGGT chrIX:197325-198050 - 31 1.31e-06 GTCCCTAAAA AAAAAAGAATAAAAA ATAACTCCGA chrX:464759-464859 - 18 1.53e-06 GCAATTCACT GAAGAAGAAAGAGAA GATGTTGTGG chrXV:571468-572268 - 73 2.04e-06 CATATGATTT GAAAAAATAAAAAAA TGTTGCAGCA chrXV:216273-216818 + 70 2.32e-06 AATTCGGGAG GGCGAAAAATAAAAA CTGGAGCAAG chrXIV:632387-632911 - 74 2.32e-06 AGACTATCTG AAATAAGAAAAAAAA CGACCCCAGT chrIV:1441116-1442272 - 47 2.64e-06 TAAATGGAAT AACAAAGAAAAAAAG GTCATACCAT chrVIII:422685-423017 + 2 2.64e-06 A AGAAGAAAAAGAAAA GCGTTGAGTA chrVII:115218-116049 - 5 2.64e-06 TAGTGAACCG GGAAAAAAATAAAGA AGAA chrIX:231102-233018 - 63 3.00e-06 GGGTTGGAAA GAATAAAAAAAAAAG TACTGCTGTA chrX:531530-531630 - 73 3.00e-06 ATTTTCCAGA AAAAAAGAAAAGAAA CTGCGCAAGC chrIV:1328525-1328836 - 30 3.00e-06 CCCTTTGGGT GGCGAAAAAAAAGAA TGTAAAAAAT chrV:511944-512443 - 25 3.00e-06 TAGTATTTAA GACAAAAAAAAAAGG GAAGGGAGAA chrIV:132589-133425 + 35 3.41e-06 CACACGTAGT AAAAGAAAAAAAAGA TCTCTTCGCG chrV:238032-238388 - 37 3.85e-06 GGAACGAACA GGAAACAAAAAAAAA GGTACGATCC chrX:227722-227822 + 29 4.29e-06 TTAGCCTTTT GAAAAAAAATCAAAA GAAAAATTTG chrXV:774978-775730 - 4 4.83e-06 AACTAAACCA GGCAGAGAAAGAAAA AAG chrVII:535458-535838 - 62 4.83e-06 AGAAAACAGT AAAAGAAAATAAAAA TAACGTAATA chrXIV:725884-726386 + 29 4.83e-06 TGGTGGCCCC GACAAAATAAAAAAA AATACTGAAG chrXIII:534575-535164 + 48 5.45e-06 TCACGGCTCG AACGAAAAAAGAAAC GTGATCACGA chrII:477118-477823 - 86 6.05e-06 . GAAAAAAAAAAATAG GAAAAGCCAG chrIV:1094970-1095728 + 56 6.05e-06 TTGCGTCACT GGGAAAAAATAAAAA TGCGAACTCT chrVII:648739-649430 + 49 6.05e-06 AAAGATCTTC GGATAAAAATAAAAA GAAGGCGGTG chrX:701788-701888 + 13 6.70e-06 CTTTCTGTAC GGAAAAAAATGAGAA AAAAGGGCAA chrVII:798109-798683 + 6 6.70e-06 CACCG AAAGGAAAAAAAGAA ACCAACACCG chrVII:95537-96187 + 25 6.70e-06 AGAACAAACA AAATAAAAATAAAAA AAGAGAATGC chrXI:591058-591814 + 25 6.70e-06 ATAAAAATAA GGGAAAAAAAGAAAG ATCATTTGTA chrXIII:91675-92188 + 31 7.47e-06 AAATATACCG AAAAAAGAAACAAGA CATTTTTTAG chrXII:657447-658789 - 73 7.47e-06 ACAATCTCCA GGCGGAAAAAAAAGA CCGAATACAA chrVIII:227105-227441 + 70 8.30e-06 CATCACATTC GACGAAGAAAAAGAG CTAAAATATG chrXIII:131380-132209 + 66 9.15e-06 CATATTCAAA AAAGAAGAAACAAAG CACTCACGAT chrXI:158198-159610 + 57 9.15e-06 ACCGAGATGA GGAGAAAAAAGGAAG TTTACTAACA chrVIII:401016-401376 - 76 1.01e-05 TTTTCATTAG GAGAAAAAAAGGAAA GATGCCCTGT chrII:591501-591789 + 81 1.12e-05 TATCTAAAAG GAAAAAGTATAAAAA TTATG chrXV:1003192-1004989 + 62 1.12e-05 TCCTTTTTAT GAAAGGGAAAAAAAA CCGAAATACT chrXI:608361-608776 - 79 1.24e-05 TATTAGA AAAAAGGAAAAAAGA TCTTAAGGGG chrIV:1016926-1017552 + 4 1.24e-05 AGA AAATAAAAAAGAAAC TCCGAAGCGG chrXII:365968-366673 - 68 1.36e-05 ACTCGATGAT AAAAAAAAAACGAAA TAAATCTCTT chrXIII:674389-675576 + 16 1.36e-05 ATAAAGGACA AAAAGAAGAAAAAAA TATTATTGTT chrIII:78026-79050 + 20 1.36e-05 TATGCCGGTC AAGGAAAAAAAGAAA CCAAAAAAAA chrII:595288-595943 + 61 1.49e-05 GACGTTAAAC GAAGGCGAAAAAAAA TACTTGGCAA chrV:178176-178919 - 76 1.49e-05 TCACTCTGCC AACAAAAAATGAGAA ATTGTCTTAT chrVII:779380-780095 - 16 1.49e-05 GATATTAGGA GAAAAAGTATGAAAA TTAAAAAAGT chrIV:550607-551620 + 49 1.49e-05 GGTGCCATGA GAAGGAAAATAAAAC TCAATGGGAC chrXIV:241407-241685 + 2 1.64e-05 T AGCGAGAAAAGAAAA CAAAACCGAA chrV:99919-100562 - 17 1.64e-05 TGTTGCGGGC AAAAAGAAATGAAAA ATTAGCGCCG chrXII:1001686-1003024 - 80 1.64e-05 AGAAGC AAGAAAGAAAAGAAA TAGAGTAAAA chrXIII:751147-752006 + 25 1.80e-05 ATAAAGATCA CGCAAAAAAAAAAGA TGATTGGCTA chrXV:677822-679251 - 60 1.80e-05 GTAAATGTAC AAAAAAGGAAGAAAG ACGAGAATTT chrV:434378-434757 + 9 1.97e-05 AATAAGAC AGGTAAAAAAGAAAA TGCCATCTCC chrXVI:555783-556446 + 26 2.35e-05 TCAGTTGAAA GACAAAAAAACATAA ATATTTCTAT chrII:564806-565196 + 68 2.35e-05 CTAAATCGCC AACGAAAAAGGAAAG TCGCCAACGC chrXIV:251722-252170 - 57 2.35e-05 AAATAGGTGA GGATAACAAAAAAAA TTCGATTGAG chrX:662923-663023 - 50 2.56e-05 TAGAATTAAC AAATAAGAAGGAAAA GCGAAAAACA chrXV:605997-606649 + 14 2.56e-05 GTATGATAAT AAGGAAAGAAGAAAA ATTTTTTCCC chrXIV:585309-586636 - 4 2.56e-05 ACAAACTGTT AAAAAAATAAAAAGG GGT chrVIII:104989-106047 - 78 2.56e-05 CTTAAAAA CGCGAAAAATAAAAA AATGATTATT chrXVI:435559-436210 + 47 2.78e-05 AAAATTCTTT GGAAAAAAAGAAAGC TCGCACTCAG chrVIII:466737-467337 - 86 2.78e-05 . AGGGAAAAAAAATAA TACCGGTATA chrIV:453729-454293 - 3 2.78e-05 GGAGTAGCGA GAAAAACAAAAATAA AA chrXVI:376916-377353 - 81 2.78e-05 ATTAA CAAAAAGAAAAATAA TCATATGTAT chrV:135100-135715 + 56 3.01e-05 TCTTATTTTC GGAGAAAAAGAAAGC CCTGTAGGGG chrXVI:277330-278019 - 6 3.26e-05 TTTCACTTCT AAAAAAGAAAAGAGC AATAA chrII:167277-169778 + 34 3.26e-05 GGAGAGAAAT AGATAAGGAAAAAAA TTGAGGATAC chrIV:355156-357665 + 82 3.26e-05 CGGAGTTTAG GACGAAAAATGGAGA GTTG chrIII:238699-238962 - 44 3.26e-05 ATCAGACAAT GGAAGAAAAAAAGGG CGCATAGGCC chrXIII:747735-748218 - 47 3.52e-05 ATCAGATGAA AAAGACGAAAGAAAC ATATGACTAG chrXI:229816-231744 + 76 3.52e-05 CGCGGTAGGC GAAAAGCAAAGAAAA CTACAGTAAT chrVIII:517292-517621 + 1 3.80e-05 . GAAAAAAAAAAAGCA TCTGAAAAAA chrII:504449-504877 - 61 4.10e-05 TATCTCATAC CACGAGAAAAAAAAA TCACCTGACA chrXIV:567880-568618 - 17 4.42e-05 CGTTGATGGT GAAAAAATATAAAGG GGCGAGCTGG chrII:478924-479435 - 4 4.75e-05 CCCCTATATG AAAAGAAAATGATAA GCA chrVII:422829-423625 - 26 5.49e-05 CATTTTAAAT GGAAAAAAATAATGG TTGCTAAGAG chrXVI:242471-243198 - 5 6.30e-05 AGTGTATTTA AAAGACGTAAGAAAA TGAA chrXII:918972-920535 - 21 6.75e-05 ACAAGTGCGG GAAGCAGAAAGAGAA GATCTAAGGC chrVI:191146-191821 + 49 6.75e-05 TATTATAGAA GGATAAGAAGCAAAA ATTTAAAAAA chrVIII:488205-488675 + 56 7.22e-05 ACGCCCTATT AAATAAAGAAGAAAC CTAAAGAAGA chrXIII:504676-505269 - 84 7.71e-05 CG AGAAAAAAATAATGG TTGCTAAGAG chrXI:578771-579323 - 63 8.75e-05 CGCCGAATCT AAAAAAGTAAAGAAC TCCTCATAGG chrXII:459635-460680 - 1 8.75e-05 AGGAAAGCGG GAAGGAATAAGAAGC chrV:469270-469810 - 71 8.75e-05 AATAGAGACA GACAGAGAAACAGAG TTACACTTTA chrII:300987-301672 - 73 9.33e-05 AACAAATATC CAAAAAAAAGAATAA TTTTAAGTTC chrVII:472419-472859 - 65 9.92e-05 AATAGCGCCA AGGAACGAAAAAGAA ATGAGTCTCG chrX:348778-348878 - 41 1.12e-04 CATACTATCG AAATGAAGATAAAAA TTTCCATCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAARAAAAAAAAAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:299826-300261 1.6e-08 39_[+2]_46 chrX:58669-58769 1.6e-08 42_[+2]_43 chrV:225165-225714 2.6e-08 7_[+2]_78 chrXI:517765-521053 2.6e-08 4_[+2]_81 chrII:372457-379251 4.5e-08 69_[-2]_16 chrXVI:452878-454142 4.5e-08 2_[+2]_83 chrXI:549367-549653 4.5e-08 5_[-2]_80 chrVIII:374954-375878 9.9e-08 36_[+2]_49 chrXII:734704-735158 9.9e-08 42_[-2]_43 chrVIII:85020-85494 1.2e-07 62_[+2]_23 chrXII:704195-704662 1.2e-07 73_[-2]_12 chrXIII:411069-411660 1.2e-07 66_[-2]_19 chrX:570507-570607 1.2e-07 11_[-2]_74 chrVII:574617-575884 1.5e-07 52_[-2]_33 chrIV:1242088-1243334 1.9e-07 20_[-2]_65 chrXIV:88605-90052 1.9e-07 40_[-2]_45 chrXV:514549-515342 2.8e-07 30_[+2]_55 chrIV:644921-645377 2.8e-07 2_[+2]_83 chrX:538365-538465 4.5e-07 29_[-2]_56 chrVII:363912-364462 4.5e-07 11_[-2]_74 chrXVI:188594-189068 4.5e-07 49_[-2]_36 chrVII:706693-707323 5e-07 83_[+2]_2 chrXI:302555-303487 5e-07 52_[-2]_33 chrX:390766-390866 6e-07 14_[+2]_71 chrXVI:699939-700724 7.2e-07 53_[+2]_32 chrX:154593-154693 8.4e-07 73_[+2]_12 chrXIV:575987-577360 8.4e-07 9_[-2]_76 chrXII:11-229 1.3e-06 65_[+2]_20 chrXVI:879965-880547 1.3e-06 68_[+2]_17 chrIX:197325-198050 1.3e-06 30_[-2]_55 chrX:464759-464859 1.5e-06 17_[-2]_68 chrXV:571468-572268 2e-06 72_[-2]_13 chrXV:216273-216818 2.3e-06 69_[+2]_16 chrXIV:632387-632911 2.3e-06 73_[-2]_12 chrIV:1441116-1442272 2.6e-06 46_[-2]_39 chrVIII:422685-423017 2.6e-06 1_[+2]_84 chrVII:115218-116049 2.6e-06 4_[-2]_81 chrIX:231102-233018 3e-06 62_[-2]_23 chrX:531530-531630 3e-06 72_[-2]_13 chrIV:1328525-1328836 3e-06 29_[-2]_56 chrV:511944-512443 3e-06 24_[-2]_61 chrIV:132589-133425 3.4e-06 34_[+2]_51 chrV:238032-238388 3.9e-06 36_[-2]_49 chrX:227722-227822 4.3e-06 28_[+2]_57 chrXV:774978-775730 4.8e-06 3_[-2]_82 chrVII:535458-535838 4.8e-06 61_[-2]_24 chrXIV:725884-726386 4.8e-06 28_[+2]_57 chrXIII:534575-535164 5.5e-06 47_[+2]_38 chrII:477118-477823 6e-06 85_[-2] chrIV:1094970-1095728 6e-06 55_[+2]_30 chrVII:648739-649430 6e-06 48_[+2]_37 chrX:701788-701888 6.7e-06 12_[+2]_73 chrVII:798109-798683 6.7e-06 5_[+2]_80 chrVII:95537-96187 6.7e-06 24_[+2]_61 chrXI:591058-591814 6.7e-06 24_[+2]_61 chrXIII:91675-92188 7.5e-06 30_[+2]_55 chrXII:657447-658789 7.5e-06 72_[-2]_13 chrVIII:227105-227441 8.3e-06 69_[+2]_16 chrXIII:131380-132209 9.1e-06 65_[+2]_20 chrXI:158198-159610 9.1e-06 56_[+2]_29 chrVIII:401016-401376 1e-05 75_[-2]_10 chrII:591501-591789 1.1e-05 80_[+2]_5 chrXV:1003192-1004989 1.1e-05 61_[+2]_24 chrXI:608361-608776 1.2e-05 78_[-2]_7 chrIV:1016926-1017552 1.2e-05 3_[+2]_82 chrXII:365968-366673 1.4e-05 67_[-2]_18 chrXIII:674389-675576 1.4e-05 15_[+2]_70 chrIII:78026-79050 1.4e-05 19_[+2]_66 chrII:595288-595943 1.5e-05 60_[+2]_25 chrV:178176-178919 1.5e-05 75_[-2]_10 chrVII:779380-780095 1.5e-05 15_[-2]_70 chrIV:550607-551620 1.5e-05 48_[+2]_37 chrXIV:241407-241685 1.6e-05 1_[+2]_84 chrV:99919-100562 1.6e-05 16_[-2]_69 chrXII:1001686-1003024 1.6e-05 79_[-2]_6 chrXIII:751147-752006 1.8e-05 24_[+2]_61 chrXV:677822-679251 1.8e-05 59_[-2]_26 chrV:434378-434757 2e-05 8_[+2]_77 chrXVI:555783-556446 2.3e-05 25_[+2]_60 chrII:564806-565196 2.3e-05 67_[+2]_18 chrXIV:251722-252170 2.3e-05 56_[-2]_29 chrX:662923-663023 2.6e-05 49_[-2]_36 chrXV:605997-606649 2.6e-05 13_[+2]_72 chrXIV:585309-586636 2.6e-05 3_[-2]_82 chrVIII:104989-106047 2.6e-05 77_[-2]_8 chrXVI:435559-436210 2.8e-05 46_[+2]_39 chrVIII:466737-467337 2.8e-05 85_[-2] chrIV:453729-454293 2.8e-05 2_[-2]_83 chrXVI:376916-377353 2.8e-05 80_[-2]_5 chrV:135100-135715 3e-05 55_[+2]_30 chrXVI:277330-278019 3.3e-05 5_[-2]_80 chrII:167277-169778 3.3e-05 33_[+2]_52 chrIV:355156-357665 3.3e-05 81_[+2]_4 chrIII:238699-238962 3.3e-05 43_[-2]_42 chrXIII:747735-748218 3.5e-05 46_[-2]_39 chrXI:229816-231744 3.5e-05 75_[+2]_10 chrVIII:517292-517621 3.8e-05 [+2]_85 chrII:504449-504877 4.1e-05 60_[-2]_25 chrXIV:567880-568618 4.4e-05 16_[-2]_69 chrII:478924-479435 4.8e-05 3_[-2]_82 chrVII:422829-423625 5.5e-05 25_[-2]_60 chrXVI:242471-243198 6.3e-05 4_[-2]_81 chrXII:918972-920535 6.7e-05 20_[-2]_65 chrVI:191146-191821 6.7e-05 48_[+2]_37 chrVIII:488205-488675 7.2e-05 55_[+2]_30 chrXIII:504676-505269 7.7e-05 83_[-2]_2 chrXI:578771-579323 8.8e-05 62_[-2]_23 chrXII:459635-460680 8.8e-05 [-2]_85 chrV:469270-469810 8.8e-05 70_[-2]_15 chrII:300987-301672 9.3e-05 72_[-2]_13 chrVII:472419-472859 9.9e-05 64_[-2]_21 chrX:348778-348878 0.00011 40_[-2]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAARAAAAAAAAAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAARAAAAAAAAAAA width=15 seqs=112 chrII:299826-300261 ( 40) GAAAAAAAAAAAAAA 1 chrX:58669-58769 ( 43) GAAAAAAAAAAAAAA 1 chrV:225165-225714 ( 8) GAAGAAAAAAAAAAA 1 chrXI:517765-521053 ( 5) GAAGAAAAAAAAAAA 1 chrII:372457-379251 ( 70) GAAAAAGAAAAAAAA 1 chrXVI:452878-454142 ( 3) GAAAAAAAAAGAAAA 1 chrXI:549367-549653 ( 6) GAAAAAAAAAGAAAA 1 chrVIII:374954-375878 ( 37) GGAGAAAAAAAAAAA 1 chrXII:734704-735158 ( 43) AAAAAAAAAAAAAAA 1 chrVIII:85020-85494 ( 63) AAAGAAAAAAAAAAA 1 chrXII:704195-704662 ( 74) AAAGAAAAAAAAAAA 1 chrXIII:411069-411660 ( 67) AAAGAAAAAAAAAAA 1 chrX:570507-570607 ( 12) AAAGAAAAAAAAAAA 1 chrVII:574617-575884 ( 53) GGAAAAGAAAAAAAA 1 chrIV:1242088-1243334 ( 21) AAAAAAGAAAAAAAA 1 chrXIV:88605-90052 ( 41) AAAAAAAAAAGAAAA 1 chrXV:514549-515342 ( 31) GAAGAAAAAAAAAGA 1 chrIV:644921-645377 ( 3) GAAAAAAAAAAAAAG 1 chrX:538365-538465 ( 30) AACGAAAAAAAAAAA 1 chrVII:363912-364462 ( 12) AACGAAAAAAAAAAA 1 chrXVI:188594-189068 ( 50) AACGAAAAAAAAAAA 1 chrVII:706693-707323 ( 84) AAAAAAAAAAAAAGA 1 chrXI:302555-303487 ( 53) GGCAAAAAAAGAAAA 1 chrX:390766-390866 ( 15) AACAAAGAAAAAAAA 1 chrXVI:699939-700724 ( 54) GGAAAAGAAAAAAGA 1 chrX:154593-154693 ( 74) AAAAAAAAATAAAAA 1 chrXIV:575987-577360 ( 10) AGCGAAAAAAAAAAA 1 chrXII:11-229 ( 66) AAAAAAAAATGAAAA 1 chrXVI:879965-880547 ( 69) GAAAAAGAAAGAGAA 1 chrIX:197325-198050 ( 31) AAAAAAGAATAAAAA 1 chrX:464759-464859 ( 18) GAAGAAGAAAGAGAA 1 chrXV:571468-572268 ( 73) GAAAAAATAAAAAAA 1 chrXV:216273-216818 ( 70) GGCGAAAAATAAAAA 1 chrXIV:632387-632911 ( 74) AAATAAGAAAAAAAA 1 chrIV:1441116-1442272 ( 47) AACAAAGAAAAAAAG 1 chrVIII:422685-423017 ( 2) AGAAGAAAAAGAAAA 1 chrVII:115218-116049 ( 5) GGAAAAAAATAAAGA 1 chrIX:231102-233018 ( 63) GAATAAAAAAAAAAG 1 chrX:531530-531630 ( 73) AAAAAAGAAAAGAAA 1 chrIV:1328525-1328836 ( 30) GGCGAAAAAAAAGAA 1 chrV:511944-512443 ( 25) GACAAAAAAAAAAGG 1 chrIV:132589-133425 ( 35) AAAAGAAAAAAAAGA 1 chrV:238032-238388 ( 37) GGAAACAAAAAAAAA 1 chrX:227722-227822 ( 29) GAAAAAAAATCAAAA 1 chrXV:774978-775730 ( 4) GGCAGAGAAAGAAAA 1 chrVII:535458-535838 ( 62) AAAAGAAAATAAAAA 1 chrXIV:725884-726386 ( 29) GACAAAATAAAAAAA 1 chrXIII:534575-535164 ( 48) AACGAAAAAAGAAAC 1 chrII:477118-477823 ( 86) GAAAAAAAAAAATAG 1 chrIV:1094970-1095728 ( 56) GGGAAAAAATAAAAA 1 chrVII:648739-649430 ( 49) GGATAAAAATAAAAA 1 chrX:701788-701888 ( 13) GGAAAAAAATGAGAA 1 chrVII:798109-798683 ( 6) AAAGGAAAAAAAGAA 1 chrVII:95537-96187 ( 25) AAATAAAAATAAAAA 1 chrXI:591058-591814 ( 25) GGGAAAAAAAGAAAG 1 chrXIII:91675-92188 ( 31) AAAAAAGAAACAAGA 1 chrXII:657447-658789 ( 73) GGCGGAAAAAAAAGA 1 chrVIII:227105-227441 ( 70) GACGAAGAAAAAGAG 1 chrXIII:131380-132209 ( 66) AAAGAAGAAACAAAG 1 chrXI:158198-159610 ( 57) GGAGAAAAAAGGAAG 1 chrVIII:401016-401376 ( 76) GAGAAAAAAAGGAAA 1 chrII:591501-591789 ( 81) GAAAAAGTATAAAAA 1 chrXV:1003192-1004989 ( 62) GAAAGGGAAAAAAAA 1 chrXI:608361-608776 ( 79) AAAAAGGAAAAAAGA 1 chrIV:1016926-1017552 ( 4) AAATAAAAAAGAAAC 1 chrXII:365968-366673 ( 68) AAAAAAAAAACGAAA 1 chrXIII:674389-675576 ( 16) AAAAGAAGAAAAAAA 1 chrIII:78026-79050 ( 20) AAGGAAAAAAAGAAA 1 chrII:595288-595943 ( 61) GAAGGCGAAAAAAAA 1 chrV:178176-178919 ( 76) AACAAAAAATGAGAA 1 chrVII:779380-780095 ( 16) GAAAAAGTATGAAAA 1 chrIV:550607-551620 ( 49) GAAGGAAAATAAAAC 1 chrXIV:241407-241685 ( 2) AGCGAGAAAAGAAAA 1 chrV:99919-100562 ( 17) AAAAAGAAATGAAAA 1 chrXII:1001686-1003024 ( 80) AAGAAAGAAAAGAAA 1 chrXIII:751147-752006 ( 25) CGCAAAAAAAAAAGA 1 chrXV:677822-679251 ( 60) AAAAAAGGAAGAAAG 1 chrV:434378-434757 ( 9) AGGTAAAAAAGAAAA 1 chrXVI:555783-556446 ( 26) GACAAAAAAACATAA 1 chrII:564806-565196 ( 68) AACGAAAAAGGAAAG 1 chrXIV:251722-252170 ( 57) GGATAACAAAAAAAA 1 chrX:662923-663023 ( 50) AAATAAGAAGGAAAA 1 chrXV:605997-606649 ( 14) AAGGAAAGAAGAAAA 1 chrXIV:585309-586636 ( 4) AAAAAAATAAAAAGG 1 chrVIII:104989-106047 ( 78) CGCGAAAAATAAAAA 1 chrXVI:435559-436210 ( 47) GGAAAAAAAGAAAGC 1 chrVIII:466737-467337 ( 86) AGGGAAAAAAAATAA 1 chrIV:453729-454293 ( 3) GAAAAACAAAAATAA 1 chrXVI:376916-377353 ( 81) CAAAAAGAAAAATAA 1 chrV:135100-135715 ( 56) GGAGAAAAAGAAAGC 1 chrXVI:277330-278019 ( 6) AAAAAAGAAAAGAGC 1 chrII:167277-169778 ( 34) AGATAAGGAAAAAAA 1 chrIV:355156-357665 ( 82) GACGAAAAATGGAGA 1 chrIII:238699-238962 ( 44) GGAAGAAAAAAAGGG 1 chrXIII:747735-748218 ( 47) AAAGACGAAAGAAAC 1 chrXI:229816-231744 ( 76) GAAAAGCAAAGAAAA 1 chrVIII:517292-517621 ( 1) GAAAAAAAAAAAGCA 1 chrII:504449-504877 ( 61) CACGAGAAAAAAAAA 1 chrXIV:567880-568618 ( 17) GAAAAAATATAAAGG 1 chrII:478924-479435 ( 4) AAAAGAAAATGATAA 1 chrVII:422829-423625 ( 26) GGAAAAAAATAATGG 1 chrXVI:242471-243198 ( 5) AAAGACGTAAGAAAA 1 chrXII:918972-920535 ( 21) GAAGCAGAAAGAGAA 1 chrVI:191146-191821 ( 49) GGATAAGAAGCAAAA 1 chrVIII:488205-488675 ( 56) AAATAAAGAAGAAAC 1 chrXIII:504676-505269 ( 84) AGAAAAAAATAATGG 1 chrXI:578771-579323 ( 63) AAAAAAGTAAAGAAC 1 chrXII:459635-460680 ( 1) GAAGGAATAAGAAGC 1 chrV:469270-469810 ( 71) GACAGAGAAACAGAG 1 chrII:300987-301672 ( 73) CAAAAAAAAGAATAA 1 chrVII:472419-472859 ( 65) AGGAACGAAAAAGAA 1 chrX:348778-348878 ( 41) AAATGAAGATAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAARAAAAAAAAAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 10.0688 E= 7.6e-074 60 -206 137 -1345 121 -1345 57 -1345 117 20 -122 -1345 87 -1345 78 -155 145 -438 -48 -1345 153 -206 -180 -1345 112 -280 66 -1345 147 -1345 -180 -196 167 -1345 -1345 -1345 124 -1345 -180 -61 106 -158 61 -1345 155 -1345 -122 -1345 138 -1345 -80 -196 138 -438 -6 -1345 128 -106 -30 -1345 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAARAAAAAAAAAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 112 E= 7.6e-074 0.473214 0.044643 0.482143 0.000000 0.723214 0.000000 0.276786 0.000000 0.705357 0.214286 0.080357 0.000000 0.571429 0.000000 0.321429 0.107143 0.857143 0.008929 0.133929 0.000000 0.901786 0.044643 0.053571 0.000000 0.678571 0.026786 0.294643 0.000000 0.866071 0.000000 0.053571 0.080357 1.000000 0.000000 0.000000 0.000000 0.741071 0.000000 0.053571 0.205357 0.651786 0.062500 0.285714 0.000000 0.919643 0.000000 0.080357 0.000000 0.812500 0.000000 0.107143 0.080357 0.812500 0.008929 0.178571 0.000000 0.758929 0.089286 0.151786 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAARAAAAAAAAAAA MEME-2 regular expression -------------------------------------------------------------------------------- [GA][AG][AC][AG]AA[AG]AA[AT][AG]AAAA -------------------------------------------------------------------------------- Time 673.70 secs. ******************************************************************************** ******************************************************************************** MOTIF WWACCACTAVRCCAMRHGVSC MEME-3 width = 21 sites = 33 llr = 527 E-value = 4.3e-055 ******************************************************************************** -------------------------------------------------------------------------------- Motif WWACCACTAVRCCAMRHGVSC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 356:1a::725::a42323:: pos.-specific C 1:3a7:9:13:a8:524145a probability G :11:2:::245::::41525: matrix T 64::::1a:1::2:22221:: bits 2.4 * * 2.2 * * * 1.9 * * * * 1.7 * ** * * * Relative 1.5 * *** *** ** Entropy 1.2 ***** *** ** (23.0 bits) 1.0 ***** **** ** 0.7 ******* **** ** 0.5 ******** ***** **** 0.2 ********************* 0.0 --------------------- Multilevel TAACCACTAGACCACGCGCCC consensus ATC GCG T AAAAAG sequence A T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWACCACTAVRCCAMRHGVSC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXV:300830-301398 - 33 6.97e-11 AGCGAGAATC ATACCACTAGACCACACGCCC GATCTTTTCT chrXVI:856512-857286 - 53 6.97e-11 GGGAGCGCGC TACCGACTACGCCACACGCCC GAATCTTGTT chrVI:101159-101606 - 44 6.97e-11 AGCGAGAATC ATACCACTAGACCACACGCCC GAATTATTGT chrX:197145-197245 + 25 6.97e-11 GGGAGCGCGC TACCGACTACGCCACACGCCC TAATATTATT chrI:138862-139384 - 79 6.97e-11 C ATACCACTAGACCACACGCCC GTACTAATTG chrXIV:96011-96651 + 11 1.04e-09 GGTGGGATGA TAACCACTACACTAACCGCCC ATGTGTTGGA chrIV:83301-83836 - 30 1.59e-09 ACGTTGGATT TTACCACTAAACCACTTGCGC TAAGTGAACT chrXIII:183737-184163 + 48 1.59e-09 ACGTTGGATT TTACCACTAAACCACTTGCGC GATCTTTATT chrX:531530-531630 - 1 1.59e-09 ACGTTGGATT TTACCACTAAACCACTTGCGC chrXVI:571854-572658 - 63 1.59e-09 ACGTTGGATT TTACCACTAAACCACTTGCGC GAAGTATTGT chrXIII:258871-259527 + 70 6.52e-09 TCTTTCGCCT TAACCACTCGGCCAAGTTGCC ATACTAACTT chrXI:379463-379950 - 24 8.22e-09 CAGATGCCAT AACCGACTAGACCACGAAACC TATTAATCTG chrXI:307939-308448 + 54 8.22e-09 CAGATGCCAT AACCGACTAGACCACGAAACC ACTTAATTGT chrVII:412064-412595 + 68 8.22e-09 CAGATGCCAT AACCGACTAGACCACGAAACC AGTTTTTTGA chrXII:214668-215180 + 61 1.03e-08 GGAAGCGCGC TACCAACTGCGCCATGTGCCC TAAAACGCGT chrVII:794164-794722 - 24 1.03e-08 GGAAGCGCGC TACCAACTGCGCCATGTGCCC GCAATCTATG chrXIII:747735-748218 + 17 1.58e-08 GTCAGACGCG TTGCCATTACGCCACGCGAGC TAGTCATATG chrXVI:819204-819888 - 33 1.58e-08 ACGGTGCCTT AACCAACTGGGCCAAGAGACC ATTCTATTGT chrIV:568621-569212 - 16 1.58e-08 GTCAGACGCG TTGCCATTACGCCACGCGAGC TACTATTTGT chrII:642878-643227 + 56 1.94e-08 ATCTGCTGCG CTACCACTGCGCCATACGAGC TTTCTATTAC chrIV:1256816-1257278 + 62 1.94e-08 GCATGAATTC TAACCACTGAACCACTTTCGC TAAGAAGATC chrIII:168058-168628 + 59 3.79e-08 CCGAAAGTGA TAACCACTACACTATAGGACC AGGACTTCTT chrVIII:62516-62992 - 51 9.61e-08 CGATGTGTAC TAACCACTATACTAAGATGGC ATATGATTTT chrV:434378-434757 + 75 9.61e-08 CGATGTGTAC TAACCACTATACTAAGATGGC GACTT chrXI:313133-313786 + 43 9.61e-08 CGATGTGTAC TAACCACTATACTAAGATGGC AAACAACTGT chrII:326561-327189 + 20 1.30e-07 GCGACGTCTT GAACCACTGGACCATTGGACC CGGAACTCGA chrXVI:743819-744782 - 34 1.62e-07 GTGCAACGCT CTACCACTAAGCTAAGGAGGC TTTTACACTG chrVIII:466737-467337 - 3 1.62e-07 GTGCAACGCT CTACCACTAAGCTAAGGAGGC TA chrXI:83939-84438 - 70 2.13e-07 CTGCCGCCTT AGACCACTCGGCCAACCCTCC ATACAAATTT chrII:347379-347909 - 9 2.13e-07 CTGCCGCCTT AGACCACTCGGCCAACCCTCC GTATAAAT chrIV:1352357-1352740 + 20 3.54e-07 TCATACGCGC TACCGATTGCGCCAACAAGGC TATTTCGTTG chrI:180866-181510 - 3 4.22e-07 CAGGCGCCTT AGACCGCTCGGCCAAACAACC AC chrII:167277-169778 - 64 2.76e-06 TGGATGTTGC TACCAACTATGCGACCACCGG ATGCTGTATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWACCACTAVRCCAMRHGVSC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:300830-301398 7e-11 32_[-3]_47 chrXVI:856512-857286 7e-11 52_[-3]_27 chrVI:101159-101606 7e-11 43_[-3]_36 chrX:197145-197245 7e-11 24_[+3]_55 chrI:138862-139384 7e-11 78_[-3]_1 chrXIV:96011-96651 1e-09 10_[+3]_69 chrIV:83301-83836 1.6e-09 29_[-3]_50 chrXIII:183737-184163 1.6e-09 47_[+3]_32 chrX:531530-531630 1.6e-09 [-3]_79 chrXVI:571854-572658 1.6e-09 62_[-3]_17 chrXIII:258871-259527 6.5e-09 69_[+3]_10 chrXI:379463-379950 8.2e-09 23_[-3]_56 chrXI:307939-308448 8.2e-09 53_[+3]_26 chrVII:412064-412595 8.2e-09 67_[+3]_12 chrXII:214668-215180 1e-08 60_[+3]_19 chrVII:794164-794722 1e-08 23_[-3]_56 chrXIII:747735-748218 1.6e-08 16_[+3]_63 chrXVI:819204-819888 1.6e-08 32_[-3]_47 chrIV:568621-569212 1.6e-08 15_[-3]_64 chrII:642878-643227 1.9e-08 55_[+3]_24 chrIV:1256816-1257278 1.9e-08 61_[+3]_18 chrIII:168058-168628 3.8e-08 58_[+3]_21 chrVIII:62516-62992 9.6e-08 50_[-3]_29 chrV:434378-434757 9.6e-08 74_[+3]_5 chrXI:313133-313786 9.6e-08 42_[+3]_37 chrII:326561-327189 1.3e-07 19_[+3]_60 chrXVI:743819-744782 1.6e-07 33_[-3]_46 chrVIII:466737-467337 1.6e-07 2_[-3]_77 chrXI:83939-84438 2.1e-07 69_[-3]_10 chrII:347379-347909 2.1e-07 8_[-3]_71 chrIV:1352357-1352740 3.5e-07 19_[+3]_60 chrI:180866-181510 4.2e-07 2_[-3]_77 chrII:167277-169778 2.8e-06 63_[-3]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWACCACTAVRCCAMRHGVSC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WWACCACTAVRCCAMRHGVSC width=21 seqs=33 chrXV:300830-301398 ( 33) ATACCACTAGACCACACGCCC 1 chrXVI:856512-857286 ( 53) TACCGACTACGCCACACGCCC 1 chrVI:101159-101606 ( 44) ATACCACTAGACCACACGCCC 1 chrX:197145-197245 ( 25) TACCGACTACGCCACACGCCC 1 chrI:138862-139384 ( 79) ATACCACTAGACCACACGCCC 1 chrXIV:96011-96651 ( 11) TAACCACTACACTAACCGCCC 1 chrIV:83301-83836 ( 30) TTACCACTAAACCACTTGCGC 1 chrXIII:183737-184163 ( 48) TTACCACTAAACCACTTGCGC 1 chrX:531530-531630 ( 1) TTACCACTAAACCACTTGCGC 1 chrXVI:571854-572658 ( 63) TTACCACTAAACCACTTGCGC 1 chrXIII:258871-259527 ( 70) TAACCACTCGGCCAAGTTGCC 1 chrXI:379463-379950 ( 24) AACCGACTAGACCACGAAACC 1 chrXI:307939-308448 ( 54) AACCGACTAGACCACGAAACC 1 chrVII:412064-412595 ( 68) AACCGACTAGACCACGAAACC 1 chrXII:214668-215180 ( 61) TACCAACTGCGCCATGTGCCC 1 chrVII:794164-794722 ( 24) TACCAACTGCGCCATGTGCCC 1 chrXIII:747735-748218 ( 17) TTGCCATTACGCCACGCGAGC 1 chrXVI:819204-819888 ( 33) AACCAACTGGGCCAAGAGACC 1 chrIV:568621-569212 ( 16) TTGCCATTACGCCACGCGAGC 1 chrII:642878-643227 ( 56) CTACCACTGCGCCATACGAGC 1 chrIV:1256816-1257278 ( 62) TAACCACTGAACCACTTTCGC 1 chrIII:168058-168628 ( 59) TAACCACTACACTATAGGACC 1 chrVIII:62516-62992 ( 51) TAACCACTATACTAAGATGGC 1 chrV:434378-434757 ( 75) TAACCACTATACTAAGATGGC 1 chrXI:313133-313786 ( 43) TAACCACTATACTAAGATGGC 1 chrII:326561-327189 ( 20) GAACCACTGGACCATTGGACC 1 chrXVI:743819-744782 ( 34) CTACCACTAAGCTAAGGAGGC 1 chrVIII:466737-467337 ( 3) CTACCACTAAGCTAAGGAGGC 1 chrXI:83939-84438 ( 70) AGACCACTCGGCCAACCCTCC 1 chrII:347379-347909 ( 9) AGACCACTCGGCCAACCCTCC 1 chrIV:1352357-1352740 ( 20) TACCGATTGCGCCAACAAGGC 1 chrI:180866-181510 ( 3) AGACCGCTCGGCCAAACAACC 1 chrII:167277-169778 ( 64) TACCAACTATGCGACCACCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWACCACTAVRCCAMRHGVSC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 8.77928 E= 4.3e-055 -5 -104 -262 88 80 -1169 -104 22 102 70 -162 -1169 -1169 242 -1169 -1169 -137 190 -4 -1169 163 -1169 -262 -1169 -1169 228 -1169 -178 -1169 -1169 -1169 167 109 -62 18 -1169 -56 70 96 -137 72 -1169 138 -1169 -1169 242 -1169 -1169 -1169 202 -262 -56 167 -1169 -1169 -1169 22 138 -1169 -105 -37 -30 118 -78 -20 96 -62 -37 -56 -104 155 -105 -5 118 18 -237 -1169 155 128 -1169 -1169 238 -262 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWACCACTAVRCCAMRHGVSC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 33 E= 4.3e-055 0.303030 0.090909 0.030303 0.575758 0.545455 0.000000 0.090909 0.363636 0.636364 0.303030 0.060606 0.000000 0.000000 1.000000 0.000000 0.000000 0.121212 0.696970 0.181818 0.000000 0.969697 0.000000 0.030303 0.000000 0.000000 0.909091 0.000000 0.090909 0.000000 0.000000 0.000000 1.000000 0.666667 0.121212 0.212121 0.000000 0.212121 0.303030 0.363636 0.121212 0.515152 0.000000 0.484848 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.757576 0.030303 0.212121 1.000000 0.000000 0.000000 0.000000 0.363636 0.484848 0.000000 0.151515 0.242424 0.151515 0.424242 0.181818 0.272727 0.363636 0.121212 0.242424 0.212121 0.090909 0.545455 0.151515 0.303030 0.424242 0.212121 0.060606 0.000000 0.545455 0.454545 0.000000 0.000000 0.969697 0.030303 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWACCACTAVRCCAMRHGVSC MEME-3 regular expression -------------------------------------------------------------------------------- [TA][AT][AC]CCACT[AG][GCA][AG]C[CT]A[CA][GA][CAT][GA][CAG][CG]C -------------------------------------------------------------------------------- Time 988.17 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:391806-395505 4.66e-01 100 chrVIII:125883-127843 6.36e-01 100 chrXV:21500-22419 1.85e-01 100 chrVI:233546-233998 6.00e-01 100 chrXI:158198-159610 3.75e-02 56_[+2(9.15e-06)]_29 chrI:138862-139384 1.13e-06 78_[-3(6.97e-11)]_1 chrIV:1236138-1238919 3.15e-01 100 chrXVI:810414-810912 7.69e-02 100 chrXIII:534575-535164 1.50e-03 47_[+2(5.45e-06)]_38 chrVII:412064-412595 6.86e-12 21_[+1(6.62e-11)]_25_[+3(8.22e-09)]_\ 12 chrVII:276784-278727 7.75e-01 100 chrXI:258410-259957 5.17e-02 100 chrIV:506636-506832 3.96e-01 100 chrIII:106923-107953 4.15e-01 100 chrXVI:377873-379012 7.64e-01 100 chrIV:847651-848790 6.16e-01 100 chrXI:432633-433201 6.47e-01 100 chrIX:197325-198050 3.08e-03 30_[-2(1.31e-06)]_55 chrXIV:499106-503822 5.21e-01 100 chrIV:644921-645377 2.92e-09 2_[+2(2.77e-07)]_43_[+1(1.82e-09)]_\ 19 chrXII:341477-341804 7.20e-02 100 chrIX:174832-175371 5.07e-04 24_[-1(2.02e-07)]_55 chrII:254807-257060 4.65e-01 100 chrXI:313133-313786 1.74e-04 42_[+3(9.61e-08)]_37 chrXVI:188594-189068 2.56e-03 49_[-2(4.48e-07)]_36 chrI:182319-182765 1.44e-05 36_[+1(1.14e-07)]_43 chrXV:759018-759834 2.74e-01 100 chrXI:591058-591814 2.67e-02 24_[+2(6.70e-06)]_61 chrVII:787428-788884 4.91e-01 100 chrXV:832108-832881 1.09e-01 100 chrXII:1064025-1065366 6.86e-01 100 chrV:41976-42338 5.77e-01 100 chrXVI:559895-560503 5.17e-05 55_[+1(3.13e-08)]_24 chrII:466193-466917 6.89e-02 100 chrII:9368-9920 4.33e-05 44_[-1(1.86e-08)]_35 chrXV:677822-679251 3.95e-02 59_[-2(1.80e-05)]_26 chrIV:555334-557186 4.00e-01 100 chrXIII:625916-627184 4.08e-02 100 chrVI:157586-158602 1.00e+00 100 chrXII:628182-628941 2.83e-01 100 chrVIII:109486-110337 4.20e-01 100 chrX:415729-415829 3.85e-02 74_[+3(3.87e-05)]_5 chrVII:95537-96187 1.88e-02 24_[+2(6.70e-06)]_61 chrVIII:241282-242455 7.63e-01 100 chrXII:734704-735158 5.82e-04 42_[-2(9.94e-08)]_43 chrXIII:161838-164723 3.10e-01 100 chrXIV:96011-96651 2.00e-05 10_[+3(1.04e-09)]_3_[-3(7.08e-05)]_\ 45 chrXIV:619439-620016 9.66e-01 100 chrVII:253819-254768 3.50e-01 100 chrXVI:752074-752400 8.85e-02 100 chrXII:975721-976278 3.07e-05 40_[+1(1.72e-07)]_39 chrIV:1256816-1257278 1.85e-14 17_[+1(1.25e-13)]_23_[+3(1.94e-08)]_\ 18 chrXV:594076-594668 2.53e-09 38_[+1(1.25e-13)]_41 chrXIII:131380-132209 2.42e-02 65_[+2(9.15e-06)]_20 chrVII:798109-798683 1.88e-02 5_[+2(6.70e-06)]_80 chrXI:430477-432394 3.00e-01 100 chrX:197145-197245 1.75e-06 24_[+3(6.97e-11)]_55 chrVI:53547-55252 5.50e-02 48_[+2(9.33e-05)]_37 chrXVI:279839-280396 1.53e-01 100 chrV:469270-469810 2.76e-08 12_[-1(6.62e-11)]_37_[-2(8.75e-05)]_\ 15 chrXI:163277-165426 2.07e-01 100 chrXII:707975-710097 4.60e-01 100 chrXI:549367-549653 3.02e-04 5_[-2(4.52e-08)]_80 chrX:570507-570607 1.19e-03 11_[-2(1.21e-07)]_74 chrV:60861-62191 2.67e-01 100 chrIV:568621-569212 6.66e-09 15_[-3(1.58e-08)]_23_[-1(1.24e-07)]_\ 20 chrVI:204714-205380 1.95e-01 100 chrXIII:258871-259527 2.07e-09 15_[+1(1.14e-07)]_33_[+3(6.52e-09)]_\ 10 chrXIII:872666-872970 7.20e-01 100 chrXII:962773-963860 3.62e-01 100 chrXII:388293-388802 1.01e-01 100 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6.29e-02 100 chrXIII:510395-511633 7.30e-01 100 chrV:135100-135715 6.51e-09 6_[-3(2.41e-06)]_11_[-2(2.78e-05)]_\ 2_[+2(3.01e-05)]_4_[+1(6.73e-08)]_5 chrIV:507008-509897 6.87e-01 100 chrIV:399053-399325 2.93e-01 100 chrII:326561-327189 2.26e-05 19_[+3(1.30e-07)]_60 chrXII:568001-568460 4.04e-01 100 chrIV:1150308-1151697 4.50e-01 100 chrXVI:692426-695596 2.64e-01 100 chrXII:921305-922545 6.16e-01 100 chrVIII:422685-423017 1.11e-02 1_[+2(2.64e-06)]_16_[+2(1.97e-05)]_\ 53 chrIV:998334-998611 6.33e-01 100 chrV:238032-238388 7.45e-04 36_[-2(3.85e-06)]_49 chrVII:857219-857655 7.20e-01 100 chrX:396518-396618 3.33e-01 100 chrVI:180640-181212 1.85e-01 100 chrIV:437486-438221 1.17e-04 22_[-1(1.14e-07)]_57 chrVI:220050-222026 8.71e-01 100 chrXII:1017673-1019379 5.22e-01 100 chrXI:218009-218872 7.67e-01 100 chrXI:570870-571412 2.76e-01 100 chrXIII:219863-221052 2.21e-01 100 chrIV:1011424-1012045 5.06e-02 100 chrXVI:828821-829693 1.95e-01 100 chrXII:875086-875664 1.29e-02 50_[-3(2.46e-05)]_29 chrXIV:663558-664280 6.03e-01 100 chrIII:197143-197970 3.01e-01 100 chrXV:234149-234854 1.08e-01 100 chrIV:768779-769513 1.88e-03 51_[+1(1.51e-06)]_28 chrXVI:856512-857286 4.48e-07 52_[-3(6.97e-11)]_27 chrXIII:664140-664732 9.87e-01 100 chrIV:1493707-1494311 4.93e-02 6_[+3(4.54e-05)]_73 chrXV:431699-432302 7.09e-01 100 chrXIII:145838-147233 4.66e-01 100 chrIV:1094970-1095728 6.35e-07 55_[+2(6.05e-06)]_7_[+1(3.13e-08)]_\ 2 chrII:88939-89979 7.28e-01 100 chrV:406616-409476 3.47e-01 100 chrIX:231102-233018 1.75e-02 62_[-2(3.00e-06)]_23 chrIV:591296-592405 6.14e-01 100 chrIII:176309-179554 3.07e-01 100 chrXV:300830-301398 1.64e-07 32_[-3(6.97e-11)]_47 chrXIII:183737-184163 2.72e-14 4_[+1(1.50e-11)]_22_[+3(1.59e-09)]_\ 32 chrXIII:463264-463939 3.73e-06 2_[-3(6.33e-05)]_23_[-1(2.30e-08)]_\ 33 chrIV:946168-946637 2.25e-03 20_[-1(3.68e-07)]_59 chrXV:663369-664172 4.09e-01 100 chrVIII:74922-75911 6.93e-01 100 chrX:373189-373289 1.58e-01 100 chrVIII:410567-412206 5.93e-01 100 chrXV:486953-487715 5.34e-01 100 chrVII:363912-364462 3.51e-03 11_[-2(4.48e-07)]_19_[+2(2.78e-05)]_\ 40 chrX:538365-538465 2.42e-03 29_[-2(4.48e-07)]_56 chrX:155993-156093 4.05e-01 100 chrXI:558743-559618 1.40e-01 100 chrIV:599522-600917 4.75e-01 100 chrXVI:108214-108833 8.82e-01 100 chrVII:726258-728204 4.49e-01 100 chrXI:302555-303487 3.14e-07 24_[-1(1.72e-07)]_7_[-2(5.04e-07)]_\ 33 chrXII:712032-713529 6.98e-01 100 chrXV:571468-572268 1.08e-02 72_[-2(2.04e-06)]_13 chrVII:328376-329143 3.03e-01 100 chrIV:1449825-1451195 6.28e-01 100 chrVII:84189-84688 3.05e-01 100 chrXVI:689310-689977 3.98e-04 25_[-1(2.02e-07)]_54 chrXI:490234-491362 9.82e-01 100 chrXVI:555783-556446 8.27e-02 25_[+2(2.35e-05)]_60 chrXIV:417221-418817 9.02e-01 100 chrXII:728176-730793 2.49e-02 50_[-3(2.05e-05)]_29 chrVII:472419-472859 2.46e-02 64_[-2(9.92e-05)]_21 chrXIII:572665-573237 9.07e-03 33_[+3(1.08e-05)]_46 chrVII:574617-575884 5.37e-04 52_[-2(1.46e-07)]_33 chrII:347379-347909 2.92e-08 8_[-3(2.13e-07)]_35_[-1(1.86e-08)]_\ 15 chrI:229612-230181 1.26e-01 100 chrXIII:747735-748218 2.36e-06 16_[+3(1.58e-08)]_9_[-2(3.52e-05)]_\ 39 chrIX:210526-211019 2.93e-01 100 chrVII:547325-547886 3.32e-01 100 chrXI:83939-84438 1.23e-03 69_[-3(2.13e-07)]_10 chrIV:835781-836439 5.29e-01 100 chrXVI:214194-216063 9.71e-01 100 chrXV:796751-797798 7.92e-01 100 chrIV:355156-357665 5.22e-02 81_[+2(3.26e-05)]_4 chrII:181326-181574 8.38e-01 100 chrXIV:552034-552905 4.47e-01 100 chrVII:843596-843887 4.62e-01 100 chrV:225165-225714 2.15e-04 7_[+2(2.59e-08)]_8_[-2(8.40e-07)]_\ 21_[-2(2.56e-05)]_19 chrIII:168058-168628 1.75e-10 14_[+1(1.82e-09)]_23_[+3(3.79e-08)]_\ 21 chrXVI:338624-339972 6.74e-01 100 chrXII:645752-646272 1.76e-01 100 chrXIV:585309-586636 3.96e-02 3_[-2(2.56e-05)]_82 chrXII:489292-489791 5.90e-01 100 chrXIII:252964-253706 7.03e-01 100 chrIV:1086819-1087512 6.58e-01 100 chrXII:490492-491150 1.76e-01 100 chrXV:820185-820487 2.50e-01 100 chrXV:605997-606649 8.46e-02 13_[+2(2.56e-05)]_72 chrVII:706693-707323 3.14e-03 83_[+2(5.04e-07)]_2 chrXIV:88605-90052 1.61e-03 40_[-2(1.91e-07)]_45 chrXIII:43653-43931 6.68e-02 100 chrXII:710262-711327 9.78e-01 100 chrVI:95152-95890 3.33e-01 100 chrV:423130-425349 3.49e-02 100 chrIX:336115-336761 5.93e-02 11_[+3(6.33e-05)]_68 chrII:167277-169778 1.18e-04 33_[+2(3.26e-05)]_15_[-3(2.76e-06)]_\ 16 chrXV:710006-710635 6.77e-01 100 chrVII:436731-442077 3.83e-01 100 chrXII:793709-797445 2.93e-01 100 chrIII:82370-82837 9.47e-01 100 chrVII:962093-962394 8.93e-01 100 chrXV:514549-515342 2.87e-03 13_[+2(3.85e-06)]_2_[+2(2.77e-07)]_\ 55 chrIX:323923-324702 1.49e-04 47_[+1(2.30e-08)]_32 chrXV:438421-439402 7.41e-01 100 chrXI:46218-47160 7.13e-01 100 chrIV:1354418-1356055 1.18e-01 100 chrVI:63944-65391 6.11e-01 100 chrXI:379463-379950 6.86e-12 23_[-3(8.22e-09)]_25_[-1(6.62e-11)]_\ 10 chrVII:422829-423625 5.75e-04 [-1(2.08e-05)]_4_[-2(5.49e-05)]_60 chrXV:762047-762504 2.00e-02 100 chrXI:333629-335355 4.33e-01 100 chrII:59454-61245 7.22e-01 100 chrV:53156-54402 2.93e-01 100 chrV:292741-293094 7.83e-02 100 chrXIII:305924-306242 4.23e-02 100 chrII:595288-595943 4.55e-02 60_[+2(1.49e-05)]_25 chrXIV:186826-187635 2.71e-01 100 chrIV:83301-83836 3.02e-13 29_[-3(1.59e-09)]_22_[-1(1.50e-11)]_\ 7 chrXV:444435-446256 8.74e-01 100 chrIV:1468073-1469202 5.97e-02 100 chrXVI:277330-278019 1.00e-01 5_[-2(3.26e-05)]_80 chrII:234435-238170 5.18e-01 100 chrIV:217108-218068 6.82e-03 12_[-3(1.36e-05)]_67 chrIV:1434387-1435127 3.45e-01 100 chrXV:741730-742997 7.85e-01 100 chrXIV:23380-26529 1.84e-01 100 chrXIV:228774-231046 9.86e-01 100 chrXV:866558-868387 2.10e-01 100 chrXV:522149-523034 1.25e-01 100 chrV:176888-177837 4.73e-02 100 chrVII:541595-542171 5.27e-07 60_[-1(7.55e-10)]_19 chrVII:319604-320163 2.40e-01 100 chrIV:411206-411706 9.35e-02 100 chrVIII:488205-488675 5.37e-03 14_[+3(5.97e-05)]_20_[+2(7.22e-05)]_\ 30 chrIX:137343-139773 3.69e-01 100 chrVII:544348-546300 1.89e-01 100 chrVII:555095-558198 5.01e-02 100 chrIV:1242088-1243334 1.16e-03 20_[-2(1.91e-07)]_65 chrXVI:866508-866724 8.08e-01 100 chrV:491658-492564 2.47e-01 100 chrV:522592-523100 2.44e-01 100 chrV:321872-323385 8.81e-01 100 chrX:704060-704160 8.22e-01 100 chrXI:578771-579323 2.03e-06 35_[-1(7.53e-09)]_6_[-2(8.75e-05)]_\ 23 chrXIII:861025-861527 2.98e-01 100 chrX:391889-391989 5.56e-01 100 chrIX:68176-69899 7.65e-01 100 chrII:291871-292230 6.04e-01 100 chrXIV:374648-375253 1.55e-04 31_[-1(3.13e-08)]_48 chrXI:219278-220707 6.94e-01 100 chrII:604154-607674 7.13e-01 100 chrIV:1352357-1352740 2.92e-03 19_[+3(3.54e-07)]_60 chrXII:231943-234972 3.63e-01 100 chrIX:386458-387044 3.35e-01 100 chrII:21230-21625 8.47e-01 100 chrXII:1071544-1071784 7.38e-01 100 chrII:299826-300261 2.08e-04 39_[+2(1.62e-08)]_46 chrVII:823253-824034 6.37e-01 100 chrXII:11073-11951 2.53e-01 100 chrVI:164421-165105 8.88e-01 100 chrII:477118-477823 7.59e-03 85_[-2(6.05e-06)] chrIX:299979-300494 1.93e-04 48_[+1(6.73e-08)]_31 chrXV:81315-83530 2.12e-01 100 chrIV:884161-884735 6.42e-06 67_[-1(1.58e-09)]_12 chrX:662923-663023 8.03e-02 4_[+2(4.10e-05)]_30_[-2(2.56e-05)]_\ 36 chrVIII:374954-375878 3.87e-04 36_[+2(9.94e-08)]_49 chrIV:1441116-1442272 7.83e-03 46_[-2(2.64e-06)]_39 chrXV:853910-854435 6.75e-06 71_[+1(1.37e-09)]_8 chrII:613124-615289 8.92e-01 100 chrXIV:241407-241685 8.19e-03 6_[+2(1.24e-05)]_79 chrXVI:204962-205262 7.11e-01 100 chrXIII:650751-654111 5.11e-01 100 chrVII:960308-961594 7.82e-01 100 chrXI:325903-328172 1.02e-01 100 chrXI:608361-608776 3.65e-02 78_[-2(1.24e-05)]_7 chrIV:132589-133425 1.05e-02 34_[+2(3.41e-06)]_51 chrIII:168855-169834 1.23e-01 100 chrIV:1201488-1202559 6.01e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************