# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MOT1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MOT1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MOT1/seqs-shuffled
#   positives: 937 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MOT1/seqs-centered (Fri Jan 17 21:36:14 PST 2020)
#   negatives: 937 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MOT1/seqs-shuffled (Fri Jan 17 21:36:14 PST 2020)
#        host: kali.stanford.edu
#        when: Fri Jan 17 21:52:47 PST 2020

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.309 C 0.196 G 0.191 T 0.305


MOTIF GGHTCGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GGHTCGA    TCGADCC         92         10   7.2e-019   2.6e-014
#          GGTTCGA    TCGAACC         64          3   1.2e-016   4.6e-012
#          GGATCGA    TCGATCC         27          5   5.0e-005   1.8e+000
#          GGCTCGA    TCGAGCC         13          2   3.6e-003   1.3e+002

letter-probability matrix: alength= 4 w= 7 nsites= 92 E= 2.6e-014
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.271739 0.097826 0.000000 0.630435
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAAAWAW DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAWAW   WTWTTTTT        239        113   4.4e-014   1.6e-009
#         AAAAAAAT   ATTTTTTT        120         49   5.3e-009   1.9e-004
#         AAAAAAAA   TTTTTTTT        122         56   1.1e-007   4.2e-003
#         AAAAATAA   TTATTTTT         76         27   3.7e-007   1.3e-002
#         AAAAATAT   ATATTTTT         50         19   9.4e-005   3.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 301 E= 1.6e-009
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.617940 0.000000 0.000000 0.382060
1.000000 0.000000 0.000000 0.000000
0.588040 0.000000 0.000000 0.411960


MOTIF AYATAYA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     AYATAYA    TRTATRT        108         40   2.7e-009   9.9e-005
#          ATATATA    TATATAT         51         15   3.5e-006   1.3e-001
#          ATATACA    TGTATAT         42         14   9.5e-005   3.5e+000
#          ACATACA    TGTATGT         18          5   5.1e-003   1.9e+002
#          ACATATA    TATATGT         29         13   9.1e-003   3.3e+002

letter-probability matrix: alength= 4 w= 7 nsites= 121 E= 9.9e-005
1.000000 0.000000 0.000000 0.000000
0.000000 0.347107 0.000000 0.652893
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.446281 0.000000 0.553719
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 24.54 seconds