Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.022761
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.060017
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.072781
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.012724
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.077209
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background
Finished invoke:
  name: bg  status: 0  time: 0.019825
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 971.700675
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 67.167425
Invoking:
  centrimo -seqlen 486 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.188722
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.526227
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background -primary MBSGGRATCGAACCSVKGAYCTYHHG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.639016
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background -primary SSCTYTWMCCACTRVRCYAHNNRVSCW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.674653
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background -primary ARADAAAAAAAAAAAARAAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.50673
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background -primary GTAAACAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.311112
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background -primary AACTKGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.286366
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background -primary RCGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.253033
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background -primary GRAGAAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.328397
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background -primary TAATCAKA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.503169
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background -primary TCCGKACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.238589
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background -primary CTCTCSCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.218818
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background -primary CKTTGGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.344509
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background -primary CCAGWTC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.266854
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background -primary CSCGCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.259133
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background -primary ATGGCAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.397756
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background --motif MBSGGRATCGAACCSVKGAYCTYHHG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.352705
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background --motif SSCTYTWMCCACTRVRCYAHNNRVSCW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.34559
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background --motif ARADAAAAAAAAAAAARAAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.368777
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background --motif GTAAACAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.249091
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background --motif AACTKGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.229998
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background --motif RCGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.228287
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background --motif GRAGAAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.241548
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background --motif TAATCAKA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.237164
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background --motif TCCGKACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.240961
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background --motif CTCTCSCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.234087
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background --motif CKTTGGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.438594
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background --motif CCAGWTC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.239365
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background --motif CSCGCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.212947
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/background --motif ATGGCAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/BY4741--MIG1.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.228881
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MIG1/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.180324
Done