Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.039608
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.073087
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.079716
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.03572
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.280596
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background
Finished invoke:
  name: bg  status: 0  time: 0.018597
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 952.372725
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 63.185897
Invoking:
  centrimo -seqlen 499 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.267136
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.527116
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background -primary HSKDNSSCTYWAMCMACTVGGCCAHRNRV /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.642089
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background -primary BCRDRAGRTCMBSGGTTCGATYCCSV /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.633265
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background -primary RDGRTGTAYGGGTGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.493957
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background -primary CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.345165
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background -primary AARAAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.560827
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.268513
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background -primary CCWTAACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.307836
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background -primary CASACGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.245159
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background -primary CCGTGMTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.23339
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background -primary GACTSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.248975
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background -primary AKGAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.323098
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background -primary TCAGWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.441449
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background -primary GCACYCAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.231639
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background --motif HSKDNSSCTYWAMCMACTVGGCCAHRNRV /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.290236
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background --motif BCRDRAGRTCMBSGGTTCGATYCCSV /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.261699
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background --motif RDGRTGTAYGGGTGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.262076
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background --motif CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.157656
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background --motif AARAAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.143317
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.160526
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background --motif CCWTAACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.155488
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background --motif CASACGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.155048
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background --motif CCGTGMTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.155654
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background --motif GACTSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.161232
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background --motif AKGAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.154533
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background --motif TCAGWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.138602
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/background --motif GCACYCAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/BY4741--MGA2.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.156374
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MGA2/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.163694
Done