******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MAC1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:237677-238815 1.0000 100 chrVIII:103854-106028 1.0000 100 chrXIV:715979-716649 1.0000 100 chrVI:223262-224174 1.0000 100 chrXI:67791-68367 1.0000 100 chrI:151319-151956 1.0000 100 chrIV:1256859-1257313 1.0000 100 chrXVI:821640-822147 1.0000 100 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1.0000 100 chrV:138392-140918 1.0000 100 chrV:13189-13662 1.0000 100 chrXIV:392396-392686 1.0000 100 chrV:423056-425285 1.0000 100 chrX:160006-160106 1.0000 100 chrXIV:632380-632890 1.0000 100 chrVII:930723-931242 1.0000 100 chrII:301040-301601 1.0000 100 chrI:182352-182799 1.0000 100 chrXV:853955-854459 1.0000 100 chrXV:281660-282541 1.0000 100 chrV:435035-436061 1.0000 100 chrVIII:562243-562576 1.0000 100 chrIV:1305364-1306131 1.0000 100 chrIV:229391-230742 1.0000 100 chrXII:468734-468996 1.0000 100 chrIX:254194-254573 1.0000 100 chrIV:1236401-1238638 1.0000 100 chrXII:424181-424452 1.0000 100 chrIX:336109-336670 1.0000 100 chrX:355126-355226 1.0000 100 chrXV:1070863-1071162 1.0000 100 chrXII:817731-820431 1.0000 100 chrXIV:442773-444838 1.0000 100 chrVII:364016-364440 1.0000 100 chrXVI:768609-769508 1.0000 100 chrXVI:622307-622870 1.0000 100 chrII:644959-645441 1.0000 100 chrIV:578989-580995 1.0000 100 chrX:378008-378108 1.0000 100 chrVI:191279-191835 1.0000 100 chrVII:110393-110949 1.0000 100 chrIV:667725-668262 1.0000 100 chrV:460590-462184 1.0000 100 chrXV:663510-664328 1.0000 100 chrXIII:760961-763157 1.0000 100 chrIV:132736-133724 1.0000 100 chrX:414769-414869 1.0000 100 chrXIII:222581-224418 1.0000 100 chrXII:592336-593153 1.0000 100 chrXIV:330388-331175 1.0000 100 chrXIII:362820-363396 1.0000 100 chrV:99847-100368 1.0000 100 chrIV:233995-234507 1.0000 100 chrXIV:6484-7203 1.0000 100 chrVIII:505800-506235 1.0000 100 chrXI:99737-99986 1.0000 100 chrVII:773810-774648 1.0000 100 chrVIII:296802-297272 1.0000 100 chrV:442964-443513 1.0000 100 chrXII:805371-807160 1.0000 100 chrXI:38680-39179 1.0000 100 chrX:415792-415892 1.0000 100 chrXI:140673-142165 1.0000 100 chrVII:371209-371500 1.0000 100 chrVI:95438-95888 1.0000 100 chrXI:518937-519182 1.0000 100 chrXV:558646-559013 1.0000 100 chrV:551043-551625 1.0000 100 chrII:680416-682227 1.0000 100 chrXVI:135346-135859 1.0000 100 chrXI:439901-440928 1.0000 100 chrV:122763-123081 1.0000 100 chrIV:802528-803038 1.0000 100 chrIV:437497-438252 1.0000 100 chrM:58224-58975 1.0000 100 chrVII:364890-366754 1.0000 100 chrII:347376-347924 1.0000 100 chrXII:875192-875688 1.0000 100 chrX:663667-663767 1.0000 100 chrXV:709972-710465 1.0000 100 chrIV:83306-83825 1.0000 100 chrVII:533828-535241 1.0000 100 chrVII:412127-412606 1.0000 100 chrIV:1259573-1259935 1.0000 100 chrIV:568627-569289 1.0000 100 chrXII:712276-713625 1.0000 100 chrII:234619-236017 1.0000 100 chrII:60180-61303 1.0000 100 chrIV:216531-218045 1.0000 100 chrIX:438693-439886 1.0000 100 chrIX:68147-69799 1.0000 100 chrV:406482-409342 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MAC1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MAC1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MAC1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.302 C 0.198 G 0.198 T 0.302 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--MAC1/background): A 0.315 C 0.185 G 0.185 T 0.315 ******************************************************************************** ******************************************************************************** MOTIF GRTCMBSGGTTCGAYYCCSVK MEME-1 width = 21 sites = 107 llr = 1874 E-value = 2.4e-392 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRTCMBSGGTTCGAYYCCSVK MEME-1 Description -------------------------------------------------------------------------------- Simplified A 252:4::2::::3a2::::3: pos.-specific C 1:17534::::a::35a7541 probability G 75::1457a:::7:1:::435 matrix T ::72:31::aa:::45:2::4 bits 2.4 * * 2.2 * * * 1.9 * * * 1.7 **** * * Relative 1.5 * ****** * Entropy 1.2 * ******* ** (25.3 bits) 1.0 ** * ******** **** 0.7 ** * ******** ***** 0.5 ************** ****** 0.2 ************** ****** 0.0 --------------------- Multilevel GGTCCGGGGTTCGATTCCCCG consensus AATATC A CC TGGT sequence C A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCMBSGGTTCGAYYCCSVK MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIII:123368-123834 - 34 2.66e-12 GGGTGCGGGA GGTCCCGGGTTCGAGTCCCGG CTCGCCCCAC chrV:551043-551625 - 9 3.20e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCT AGAGACCA chrV:442964-443513 - 22 3.20e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCT AGAGACCATA chrIV:667725-668262 - 72 3.20e-11 AACGCGGG GATCAGCGGTTCGATCCCGCT AGAGACCATT chrIX:210493-210988 + 20 3.20e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCT AGAGACCATA chrII:197199-197896 + 42 3.20e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCT AGAGACCATT chrIX:183111-183750 - 68 3.20e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCT AGAGACCACT chrXIV:569633-570165 - 26 3.20e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCT AGAGACCATT chrXII:1051843-1052401 - 7 3.20e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCT AGAGAC chrXVI:819164-819979 + 53 3.20e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCT AGAGACCATT chrIV:83306-83825 + 75 5.53e-11 GCCATCGTTG GGCCCCCGGTTCGATTCCGGG CTTGC chrVII:930723-931242 - 29 5.53e-11 GCCATCGTTG GGCCCCCGGTTCGATTCCGGG CTTGCGCATT chrXVI:571977-572594 + 76 5.53e-11 GCCATCGTTG GGCCCCCGGTTCGATTCCGGG CTTG chrIV:992591-993185 + 36 5.53e-11 GCCATCGTTG GGCCCCCGGTTCGATTCCGGG CTTGCGCACT chrXV:853955-854459 - 38 9.34e-11 GCAAGGAAGA GGTCATCGGTTCGATTCCGGT TGCGTCCAAT chrV:311761-312319 - 41 9.34e-11 GCAAGGAAGA GGTCATCGGTTCGATTCCGGT TGCGTCCAAT chrXII:214655-215188 - 20 9.34e-11 GCAAGGAAGA GGTCATCGGTTCGATTCCGGT TGCGTCCATT chrI:166026-166621 + 38 9.34e-11 GCAAGGAAGA GGTCATCGGTTCGATTCCGGT TGCGTCCAAA chrX:414769-414869 + 31 1.78e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTAA chrII:644959-645441 + 60 1.78e-10 TTCACCGTGG AGACCGGGGTTCGACTCCCCG TATCGGAGTT chrV:487125-487644 - 5 1.78e-10 TTCACCGTGG AGACCGGGGTTCGACTCCCCG TATC chrVII:541605-542195 + 43 1.78e-10 TTCACCGTGG AGACCGGGGTTCGACTCCCCG TATCGGAGTG chrIX:370208-370658 + 77 1.78e-10 TTCACCGTGG AGACCGGGGTTCGACTCCCCG TAT chrV:135158-135718 - 45 1.78e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrVII:328338-328976 + 19 1.78e-10 TTCACCGTGG AGACCGGGGTTCGACTCCCCG TATCGGAGTT chrV:176817-177454 + 57 1.78e-10 TTCACCGTGG AGACCGGGGTTCGACTCCCCG TATCGGAGTA chrVII:185462-186024 - 29 1.78e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTAT chrIX:197323-197968 + 40 1.78e-10 CTCACCGTGG AGACCGGGGTTCGACTCCCCG CTTCGGAGTT chrVI:226522-226945 - 13 1.78e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTTA chrX:115696-115796 - 26 1.78e-10 TTCACCGTGG AGACCGGGGTTCGACTCCCCG TATCGGAGTA chrVII:876086-876819 + 36 1.78e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrIV:1016933-1017523 - 37 1.78e-10 CTCACCGTGG AGACCGGGGTTCGACTCCCCG CTTCGGAGTT chrXIII:480370-480928 - 30 1.78e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTTC chrXVI:581819-582441 + 26 1.78e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrXI:202818-203271 + 49 1.78e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCT ACAGGGCTTT chrVIII:475461-475921 - 73 2.08e-10 CGGCAAA GGTCCCGAGTTCGATCCTCGG TTGGAACATT chrXIV:546921-547422 + 47 9.72e-10 GCATGCGAGA GGCCCTGGGTTCAATTCCCAG CTCGCCCCGT chrXII:92240-92973 + 66 9.72e-10 GCATGCGAGA GGCCCTGGGTTCAATTCCCAG CTCGCCCCTT chrXIV:567877-568479 + 61 9.72e-10 GCATGCGAGA GGCCCTGGGTTCAATTCCCAG CTCGCCCCTT chrVIII:388653-389226 - 12 9.72e-10 GCATGCGAGA GGCCCTGGGTTCAATTCCCAG CTCGCCCCAT chrIV:568627-569289 + 17 1.25e-09 CTAATCAGAA GATTATGGGTTCGACCCCCAT CGTGAGTGCT chrX:355126-355226 + 34 1.25e-09 CTAATCAGAA GATTATGGGTTCGACCCCCAT CGTGAGTGCT chrVII:828428-829024 - 55 1.25e-09 CTAATCAGAA GATTATGGGTTCGACCCCCAT CGTGAGTGCT chrVII:405256-405791 + 40 1.25e-09 CTAATCAGAA GATTATGGGTTCGACCCCCAT CGTGAGTGCT chrII:405604-406257 + 41 1.25e-09 CTAATCAGAA GATTATGGGTTCGACCCCCAT CGTGAGTGCT chrXIII:131478-132158 - 65 1.25e-09 CTAATCAGAA GATTATGGGTTCGACCCCCAT CGTGAGTGCT chrVII:736159-736621 + 43 1.25e-09 CTAATCAGAA GATTATGGGTTCGACCCCCAT CGTGAGTGTT chrX:374185-374285 - 38 1.25e-09 CTAATCAGAA GATTATGGGTTCGACCCCCAT CGTGAGTGCT chrIV:488512-489170 - 14 1.60e-09 ACACGGCGAA GATCCCGAGTTCGAACCTCGG TTGGATCAGA chrIV:802528-803038 - 6 2.57e-09 TTGATCCGGA CAACCCCGGTTCGAATCCGGG TAGGA chrIV:644885-645422 - 58 2.57e-09 TTGATCCGGA CAACCCCGGTTCGAATCCGGG TAGGACCTTT chrIII:168059-168627 - 16 2.57e-09 TTGATCCGGA CAACCCCGGTTCGAATCCGGG TAGGACCTTT chrVIII:134041-134649 + 69 2.57e-09 TTGATCCGGA CAACCCCGGTTCGAATCCGGG TAGGACCTTT chrV:130837-131400 - 22 2.57e-09 TTGATCCGAA CAACCCCGGTTCGAATCCGGG TAAGACCTAT chrVIII:85048-85578 - 43 3.22e-09 ACACGCAGAA CGTCCCCAGTTCGATCCTGGG CGAAATCAAT chrXIII:586415-586925 - 24 3.22e-09 ACACGCAGAA CGTCCCCAGTTCGATCCTGGG CGAAATCATT chrXIII:372170-372754 - 41 3.22e-09 ACACGCAGAA CGTCCCCAGTTCGATCCTGGG CGAAATCATT chrV:438440-439023 + 64 3.22e-09 ACACGCAGAA CGTCCCCAGTTCGATCCTGGG CGAAATCAAT chrV:469248-469710 + 73 3.22e-09 ACACGCAGAA CGTCCCCAGTTCGATCCTGGG CGAAATC chrXI:307971-308431 - 1 3.22e-09 ACACGCAGAA CGTCCCCAGTTCGATCCTGGG chrXI:379451-379948 + 76 3.22e-09 ACACGCAGAA CGTCCCCAGTTCGATCCTGGG CGAA chrXIII:420296-420903 - 47 3.22e-09 ACACGCAGAA CGTCCCCAGTTCGATCCTGGG CGAAATCATT chrXII:875192-875688 + 53 3.60e-09 GATACCGAAA TGTCAGGGGTTCGAGCCCCCT ATGAGGAGTT chrXI:578720-579320 + 62 3.60e-09 GATACCGAAA TGTCAGGGGTTCGAGCCCCCT ATGAGGAGTT chrXI:46541-47042 - 2 4.02e-09 GTAATGCGGG GATCGTGGGTTCAATTCCCAC A chrIX:336109-336670 - 18 6.16e-09 GTCGCGTGCC AGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrX:541306-541406 + 25 6.16e-09 GTCGCGTGCC AGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrXIII:463270-463927 + 49 6.16e-09 GTCGCGTGCC AGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrXII:426906-427433 + 56 6.16e-09 GTCGCGTGCC AGATCGGGGTTCAATTCCCCG TCGCGGAGAA chrIX:324030-324643 - 25 6.16e-09 GTCGCGTGCC AGATCGGGGTTCAATTCCCCG TCGCGGAGAT chrXIV:104572-105149 + 39 8.37e-09 GTAATGTGGA GATCATCGGTTCAAATCCGAT TGGAAGCATA chrIX:174812-175288 + 75 8.37e-09 GTAATGTGGA GATCATCGGTTCAAATCCGAT TGGAA chrXIV:560163-561202 - 69 8.37e-09 GTAATGTGGA GATCATCGGTTCAAATCCGAT TGGAAGCATA chrX:58720-58820 - 19 8.37e-09 GTAATGTGGA GATCATCGGTTCAAATCCGAT TGGAAGCATA chrXV:113516-114121 + 78 8.37e-09 GTAATGTGGA GATCATCGGTTCAAATCCGAT TG chrIV:433993-434610 - 21 8.37e-09 GTAATGTGGA GATCATCGGTTCAAATCCGAT TGGAAGCATA chrIX:325480-326124 + 40 8.37e-09 GTAATGTGGA GATCATCGGTTCAAATCCGAT TGGAAGCAAT chrX:538325-538425 + 76 9.24e-09 CTAAGGAGAA GACTGCGGGTTCGAGTCCCGT ACGG chrXVI:435555-436228 - 60 1.64e-08 CAAATCTGTT GGTCCTTAGTTCGATCCTGAG TGCGAGCTTT chrVII:706911-707352 - 35 1.64e-08 CAAATCTGTT GGTCCTTAGTTCGATCCTGAG TGCGAGCTTT chrIV:884144-884734 + 76 1.64e-08 GCAACGCGAC CGTCGTGGGTTCAAACCCCAC CTCG chrXVI:622307-622870 - 10 3.34e-08 GTTATCTGGA GGTCCTGTGTTCGATCCACAG AATTCGCAT chrIV:1095103-1095699 - 27 3.34e-08 GATATCTGGA GGTCCTGTGTTCGATCCACAG AGTTCGCATT chrXIII:320936-321359 - 58 3.34e-08 GCATGGGAGA GGTCTCCGGTTCGATTCCGGA CTCGTCCATT chrIV:410165-410725 + 28 3.34e-08 GCATGGGAGA GGTCTCCGGTTCGATTCCGGA CTCGTCCAAA chrVI:157632-158301 - 8 3.34e-08 GTTATCTGGA GGTCCTGTGTTCGATCCACAG AATTCGC chrIV:946119-946638 + 44 5.46e-08 GAAATCTTGA GATCGGGCGTTCGACTCGCCC CCGGGAGATT chrXIII:168580-169089 + 71 5.46e-08 GAAATCTTGA GATCGGGCGTTCGACTCGCCC CCGGGAGAT chrXIII:837691-838302 + 42 5.46e-08 GAAATCTTGA GATCGGGCGTTCGACTCGCCC CCGGGAGATA chrVI:167252-167722 + 60 5.46e-08 GAAATCTTGA GATCGGGCGTTCGACTCGCCC CCGGGAGATA chrXIV:632380-632890 + 59 5.90e-08 TTAATCGCAA GATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrXV:228080-228629 + 72 5.90e-08 TTAATCGCAA GATCGTGAGTTCAACCCTCAC TGGGGTCG chrXVI:810438-811030 + 37 5.90e-08 TTAATCGCAA GATCGTGAGTTCAACCCTCAC TGGGGTCGTA chrXI:74389-74998 + 26 5.90e-08 TTAATCGCAA GATCGTGAGTTCAACCCTCAC TGGGGTCGCT chrVII:730915-731408 + 71 5.90e-08 TTAATCGCAA GATCGTGAGTTCAACCCTCAC TGGGGTCGT chrXII:975725-976278 - 40 5.90e-08 TTAATCGCAA GATCGTGAGTTCAACCCTCAC TGGGGTCGTT chrVII:700124-701326 + 53 1.43e-07 ATCTCTTCGG AGGCGCGGGTTCAAACCCCGC GGGTATCAAT chrX:390774-390874 - 54 1.53e-07 ATAATCTGAA GGTCGAGAGTTCGAACCTCCC CTGGAGCATA chrVIII:466736-467276 + 77 1.76e-07 GTAATGCAAA GGTCGCTAGTTCAATTCTGGC AGG chrV:492184-492616 - 10 2.29e-07 CGAACCAGAA GATTCCAGGTTCAAGTCCTGG CGGGGAAGG chrXII:374168-374674 + 28 2.29e-07 CGAACCAGAA GATTCCAGGTTCAAGTCCTGG CGGGGAAGAT chrIV:619695-620274 - 43 2.29e-07 CGAACCAGAA GATTCCAGGTTCAAGTCCTGG CGGGGAAGAT chrXIII:362820-363396 + 49 3.76e-07 GTGGCCGATG AAACCCTGGTTCGATTCTAGG AGATGGCATT chrVII:110393-110949 - 12 3.76e-07 GTGGCCGATG AAACCCTGGTTCGATTCTAGG AGATGGCAAT chrV:434367-434794 - 19 3.76e-07 GTGGCCGATG AAACCCTGGTTCGATTCTAGG AGATGGCATT chrII:347376-347924 - 61 4.48e-07 ATTACTGAAG GATGCGAGGTTCGAACTCGCG CGGACAACCG chrII:9349-10010 - 12 4.48e-07 AATACTGAAG GATGCGAGGTTCGAACTCGCG CGGACAACCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCMBSGGTTCGAYYCCSVK MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123368-123834 2.7e-12 33_[-1]_46 chrV:551043-551625 3.2e-11 8_[-1]_71 chrV:442964-443513 3.2e-11 21_[-1]_58 chrIV:667725-668262 3.2e-11 71_[-1]_8 chrIX:210493-210988 3.2e-11 19_[+1]_60 chrII:197199-197896 3.2e-11 41_[+1]_38 chrIX:183111-183750 3.2e-11 67_[-1]_12 chrXIV:569633-570165 3.2e-11 25_[-1]_54 chrXII:1051843-1052401 3.2e-11 6_[-1]_73 chrXVI:819164-819979 3.2e-11 52_[+1]_27 chrIV:83306-83825 5.5e-11 74_[+1]_5 chrVII:930723-931242 5.5e-11 28_[-1]_51 chrXVI:571977-572594 5.5e-11 75_[+1]_4 chrIV:992591-993185 5.5e-11 35_[+1]_44 chrXV:853955-854459 9.3e-11 37_[-1]_42 chrV:311761-312319 9.3e-11 40_[-1]_39 chrXII:214655-215188 9.3e-11 19_[-1]_60 chrI:166026-166621 9.3e-11 37_[+1]_42 chrX:414769-414869 1.8e-10 30_[+1]_49 chrII:644959-645441 1.8e-10 59_[+1]_20 chrV:487125-487644 1.8e-10 4_[-1]_75 chrVII:541605-542195 1.8e-10 42_[+1]_37 chrIX:370208-370658 1.8e-10 76_[+1]_3 chrV:135158-135718 1.8e-10 44_[-1]_35 chrVII:328338-328976 1.8e-10 18_[+1]_61 chrV:176817-177454 1.8e-10 56_[+1]_23 chrVII:185462-186024 1.8e-10 28_[-1]_51 chrIX:197323-197968 1.8e-10 39_[+1]_40 chrVI:226522-226945 1.8e-10 12_[-1]_67 chrX:115696-115796 1.8e-10 25_[-1]_54 chrVII:876086-876819 1.8e-10 35_[+1]_44 chrIV:1016933-1017523 1.8e-10 36_[-1]_43 chrXIII:480370-480928 1.8e-10 29_[-1]_50 chrXVI:581819-582441 1.8e-10 25_[+1]_54 chrXI:202818-203271 1.8e-10 48_[+1]_31 chrVIII:475461-475921 2.1e-10 72_[-1]_7 chrXIV:546921-547422 9.7e-10 46_[+1]_33 chrXII:92240-92973 9.7e-10 65_[+1]_14 chrXIV:567877-568479 9.7e-10 60_[+1]_19 chrVIII:388653-389226 9.7e-10 11_[-1]_68 chrIV:568627-569289 1.3e-09 16_[+1]_63 chrX:355126-355226 1.3e-09 33_[+1]_46 chrVII:828428-829024 1.3e-09 54_[-1]_25 chrVII:405256-405791 1.3e-09 39_[+1]_40 chrII:405604-406257 1.3e-09 40_[+1]_39 chrXIII:131478-132158 1.3e-09 64_[-1]_15 chrVII:736159-736621 1.3e-09 42_[+1]_37 chrX:374185-374285 1.3e-09 37_[-1]_42 chrIV:488512-489170 1.6e-09 13_[-1]_66 chrIV:802528-803038 2.6e-09 5_[-1]_74 chrIV:644885-645422 2.6e-09 57_[-1]_22 chrIII:168059-168627 2.6e-09 15_[-1]_64 chrVIII:134041-134649 2.6e-09 68_[+1]_11 chrV:130837-131400 2.6e-09 21_[-1]_58 chrVIII:85048-85578 3.2e-09 42_[-1]_37 chrXIII:586415-586925 3.2e-09 23_[-1]_56 chrXIII:372170-372754 3.2e-09 40_[-1]_39 chrV:438440-439023 3.2e-09 63_[+1]_16 chrV:469248-469710 3.2e-09 72_[+1]_7 chrXI:307971-308431 3.2e-09 [-1]_79 chrXI:379451-379948 3.2e-09 75_[+1]_4 chrXIII:420296-420903 3.2e-09 46_[-1]_33 chrXII:875192-875688 3.6e-09 52_[+1]_27 chrXI:578720-579320 3.6e-09 61_[+1]_18 chrXI:46541-47042 4e-09 1_[-1]_78 chrIX:336109-336670 6.2e-09 17_[-1]_62 chrX:541306-541406 6.2e-09 24_[+1]_55 chrXIII:463270-463927 6.2e-09 48_[+1]_31 chrXII:426906-427433 6.2e-09 55_[+1]_24 chrIX:324030-324643 6.2e-09 24_[-1]_55 chrXIV:104572-105149 8.4e-09 38_[+1]_41 chrIX:174812-175288 8.4e-09 74_[+1]_5 chrXIV:560163-561202 8.4e-09 68_[-1]_11 chrX:58720-58820 8.4e-09 18_[-1]_61 chrXV:113516-114121 8.4e-09 77_[+1]_2 chrIV:433993-434610 8.4e-09 20_[-1]_59 chrIX:325480-326124 8.4e-09 39_[+1]_40 chrX:538325-538425 9.2e-09 75_[+1]_4 chrXVI:435555-436228 1.6e-08 59_[-1]_20 chrVII:706911-707352 1.6e-08 34_[-1]_45 chrIV:884144-884734 1.6e-08 75_[+1]_4 chrXVI:622307-622870 3.3e-08 9_[-1]_70 chrIV:1095103-1095699 3.3e-08 26_[-1]_53 chrXIII:320936-321359 3.3e-08 57_[-1]_22 chrIV:410165-410725 3.3e-08 27_[+1]_52 chrVI:157632-158301 3.3e-08 7_[-1]_72 chrIV:946119-946638 5.5e-08 43_[+1]_36 chrXIII:168580-169089 5.5e-08 70_[+1]_9 chrXIII:837691-838302 5.5e-08 41_[+1]_38 chrVI:167252-167722 5.5e-08 59_[+1]_20 chrXIV:632380-632890 5.9e-08 58_[+1]_21 chrXV:228080-228629 5.9e-08 71_[+1]_8 chrXVI:810438-811030 5.9e-08 36_[+1]_43 chrXI:74389-74998 5.9e-08 25_[+1]_54 chrVII:730915-731408 5.9e-08 70_[+1]_9 chrXII:975725-976278 5.9e-08 39_[-1]_40 chrVII:700124-701326 1.4e-07 52_[+1]_27 chrX:390774-390874 1.5e-07 53_[-1]_26 chrVIII:466736-467276 1.8e-07 76_[+1]_3 chrV:492184-492616 2.3e-07 9_[-1]_70 chrXII:374168-374674 2.3e-07 27_[+1]_52 chrIV:619695-620274 2.3e-07 42_[-1]_37 chrXIII:362820-363396 3.8e-07 48_[+1]_31 chrVII:110393-110949 3.8e-07 11_[-1]_68 chrV:434367-434794 3.8e-07 18_[-1]_61 chrII:347376-347924 4.5e-07 60_[-1]_19 chrII:9349-10010 4.5e-07 11_[-1]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCMBSGGTTCGAYYCCSVK MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRTCMBSGGTTCGAYYCCSVK width=21 seqs=107 chrIII:123368-123834 ( 34) GGTCCCGGGTTCGAGTCCCGG 1 chrV:551043-551625 ( 9) GATCAGCGGTTCGATCCCGCT 1 chrV:442964-443513 ( 22) GATCAGCGGTTCGATCCCGCT 1 chrIV:667725-668262 ( 72) GATCAGCGGTTCGATCCCGCT 1 chrIX:210493-210988 ( 20) GATCAGCGGTTCGATCCCGCT 1 chrII:197199-197896 ( 42) GATCAGCGGTTCGATCCCGCT 1 chrIX:183111-183750 ( 68) GATCAGCGGTTCGATCCCGCT 1 chrXIV:569633-570165 ( 26) GATCAGCGGTTCGATCCCGCT 1 chrXII:1051843-1052401 ( 7) GATCAGCGGTTCGATCCCGCT 1 chrXVI:819164-819979 ( 53) GATCAGCGGTTCGATCCCGCT 1 chrIV:83306-83825 ( 75) GGCCCCCGGTTCGATTCCGGG 1 chrVII:930723-931242 ( 29) GGCCCCCGGTTCGATTCCGGG 1 chrXVI:571977-572594 ( 76) GGCCCCCGGTTCGATTCCGGG 1 chrIV:992591-993185 ( 36) GGCCCCCGGTTCGATTCCGGG 1 chrXV:853955-854459 ( 38) GGTCATCGGTTCGATTCCGGT 1 chrV:311761-312319 ( 41) GGTCATCGGTTCGATTCCGGT 1 chrXII:214655-215188 ( 20) GGTCATCGGTTCGATTCCGGT 1 chrI:166026-166621 ( 38) GGTCATCGGTTCGATTCCGGT 1 chrX:414769-414869 ( 31) GGTTAGGGGTTCGAGCCCCCT 1 chrII:644959-645441 ( 60) AGACCGGGGTTCGACTCCCCG 1 chrV:487125-487644 ( 5) AGACCGGGGTTCGACTCCCCG 1 chrVII:541605-542195 ( 43) AGACCGGGGTTCGACTCCCCG 1 chrIX:370208-370658 ( 77) AGACCGGGGTTCGACTCCCCG 1 chrV:135158-135718 ( 45) GGTTAGGGGTTCGAGCCCCCT 1 chrVII:328338-328976 ( 19) AGACCGGGGTTCGACTCCCCG 1 chrV:176817-177454 ( 57) AGACCGGGGTTCGACTCCCCG 1 chrVII:185462-186024 ( 29) GGTTAGGGGTTCGAGCCCCCT 1 chrIX:197323-197968 ( 40) AGACCGGGGTTCGACTCCCCG 1 chrVI:226522-226945 ( 13) GGTTAGGGGTTCGAGCCCCCT 1 chrX:115696-115796 ( 26) AGACCGGGGTTCGACTCCCCG 1 chrVII:876086-876819 ( 36) GGTTAGGGGTTCGAGCCCCCT 1 chrIV:1016933-1017523 ( 37) AGACCGGGGTTCGACTCCCCG 1 chrXIII:480370-480928 ( 30) GGTTAGGGGTTCGAGCCCCCT 1 chrXVI:581819-582441 ( 26) GGTTAGGGGTTCGAGCCCCCT 1 chrXI:202818-203271 ( 49) GGTTAGGGGTTCGAGCCCCCT 1 chrVIII:475461-475921 ( 73) GGTCCCGAGTTCGATCCTCGG 1 chrXIV:546921-547422 ( 47) GGCCCTGGGTTCAATTCCCAG 1 chrXII:92240-92973 ( 66) GGCCCTGGGTTCAATTCCCAG 1 chrXIV:567877-568479 ( 61) GGCCCTGGGTTCAATTCCCAG 1 chrVIII:388653-389226 ( 12) GGCCCTGGGTTCAATTCCCAG 1 chrIV:568627-569289 ( 17) GATTATGGGTTCGACCCCCAT 1 chrX:355126-355226 ( 34) GATTATGGGTTCGACCCCCAT 1 chrVII:828428-829024 ( 55) GATTATGGGTTCGACCCCCAT 1 chrVII:405256-405791 ( 40) GATTATGGGTTCGACCCCCAT 1 chrII:405604-406257 ( 41) GATTATGGGTTCGACCCCCAT 1 chrXIII:131478-132158 ( 65) GATTATGGGTTCGACCCCCAT 1 chrVII:736159-736621 ( 43) GATTATGGGTTCGACCCCCAT 1 chrX:374185-374285 ( 38) GATTATGGGTTCGACCCCCAT 1 chrIV:488512-489170 ( 14) GATCCCGAGTTCGAACCTCGG 1 chrIV:802528-803038 ( 6) CAACCCCGGTTCGAATCCGGG 1 chrIV:644885-645422 ( 58) CAACCCCGGTTCGAATCCGGG 1 chrIII:168059-168627 ( 16) CAACCCCGGTTCGAATCCGGG 1 chrVIII:134041-134649 ( 69) CAACCCCGGTTCGAATCCGGG 1 chrV:130837-131400 ( 22) CAACCCCGGTTCGAATCCGGG 1 chrVIII:85048-85578 ( 43) CGTCCCCAGTTCGATCCTGGG 1 chrXIII:586415-586925 ( 24) CGTCCCCAGTTCGATCCTGGG 1 chrXIII:372170-372754 ( 41) CGTCCCCAGTTCGATCCTGGG 1 chrV:438440-439023 ( 64) CGTCCCCAGTTCGATCCTGGG 1 chrV:469248-469710 ( 73) CGTCCCCAGTTCGATCCTGGG 1 chrXI:307971-308431 ( 1) CGTCCCCAGTTCGATCCTGGG 1 chrXI:379451-379948 ( 76) CGTCCCCAGTTCGATCCTGGG 1 chrXIII:420296-420903 ( 47) CGTCCCCAGTTCGATCCTGGG 1 chrXII:875192-875688 ( 53) TGTCAGGGGTTCGAGCCCCCT 1 chrXI:578720-579320 ( 62) TGTCAGGGGTTCGAGCCCCCT 1 chrXI:46541-47042 ( 2) GATCGTGGGTTCAATTCCCAC 1 chrIX:336109-336670 ( 18) AGATCGGGGTTCAATTCCCCG 1 chrX:541306-541406 ( 25) AGATCGGGGTTCAATTCCCCG 1 chrXIII:463270-463927 ( 49) AGATCGGGGTTCAATTCCCCG 1 chrXII:426906-427433 ( 56) AGATCGGGGTTCAATTCCCCG 1 chrIX:324030-324643 ( 25) AGATCGGGGTTCAATTCCCCG 1 chrXIV:104572-105149 ( 39) GATCATCGGTTCAAATCCGAT 1 chrIX:174812-175288 ( 75) GATCATCGGTTCAAATCCGAT 1 chrXIV:560163-561202 ( 69) GATCATCGGTTCAAATCCGAT 1 chrX:58720-58820 ( 19) GATCATCGGTTCAAATCCGAT 1 chrXV:113516-114121 ( 78) GATCATCGGTTCAAATCCGAT 1 chrIV:433993-434610 ( 21) GATCATCGGTTCAAATCCGAT 1 chrIX:325480-326124 ( 40) GATCATCGGTTCAAATCCGAT 1 chrX:538325-538425 ( 76) GACTGCGGGTTCGAGTCCCGT 1 chrXVI:435555-436228 ( 60) GGTCCTTAGTTCGATCCTGAG 1 chrVII:706911-707352 ( 35) GGTCCTTAGTTCGATCCTGAG 1 chrIV:884144-884734 ( 76) CGTCGTGGGTTCAAACCCCAC 1 chrXVI:622307-622870 ( 10) GGTCCTGTGTTCGATCCACAG 1 chrIV:1095103-1095699 ( 27) GGTCCTGTGTTCGATCCACAG 1 chrXIII:320936-321359 ( 58) GGTCTCCGGTTCGATTCCGGA 1 chrIV:410165-410725 ( 28) GGTCTCCGGTTCGATTCCGGA 1 chrVI:157632-158301 ( 8) GGTCCTGTGTTCGATCCACAG 1 chrIV:946119-946638 ( 44) GATCGGGCGTTCGACTCGCCC 1 chrXIII:168580-169089 ( 71) GATCGGGCGTTCGACTCGCCC 1 chrXIII:837691-838302 ( 42) GATCGGGCGTTCGACTCGCCC 1 chrVI:167252-167722 ( 60) GATCGGGCGTTCGACTCGCCC 1 chrXIV:632380-632890 ( 59) GATCGTGAGTTCAACCCTCAC 1 chrXV:228080-228629 ( 72) GATCGTGAGTTCAACCCTCAC 1 chrXVI:810438-811030 ( 37) GATCGTGAGTTCAACCCTCAC 1 chrXI:74389-74998 ( 26) GATCGTGAGTTCAACCCTCAC 1 chrVII:730915-731408 ( 71) GATCGTGAGTTCAACCCTCAC 1 chrXII:975725-976278 ( 40) GATCGTGAGTTCAACCCTCAC 1 chrVII:700124-701326 ( 53) AGGCGCGGGTTCAAACCCCGC 1 chrX:390774-390874 ( 54) GGTCGAGAGTTCGAACCTCCC 1 chrVIII:466736-467276 ( 77) GGTCGCTAGTTCAATTCTGGC 1 chrV:492184-492616 ( 10) GATTCCAGGTTCAAGTCCTGG 1 chrXII:374168-374674 ( 28) GATTCCAGGTTCAAGTCCTGG 1 chrIV:619695-620274 ( 43) GATTCCAGGTTCAAGTCCTGG 1 chrXIII:362820-363396 ( 49) AAACCCTGGTTCGATTCTAGG 1 chrVII:110393-110949 ( 12) AAACCCTGGTTCGATTCTAGG 1 chrV:434367-434794 ( 19) AAACCCTGGTTCGATTCTAGG 1 chrII:347376-347924 ( 61) GATGCGAGGTTCGAACTCGCG 1 chrII:9349-10010 ( 12) GATGCGAGGTTCGAACTCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCMBSGGTTCGAYYCCSVK MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.7529 E= 2.4e-392 -90 -50 188 -407 57 -1339 152 -1339 -61 -114 -431 115 -1339 201 -331 -43 17 136 -31 -407 -507 65 98 10 -275 98 152 -249 -75 -231 201 -349 -1339 -1339 243 -1339 -1339 -1339 -1339 167 -1339 -1339 -1339 167 -1339 243 -1339 -1339 -22 -1339 198 -1339 167 -1339 -1339 -1339 -90 45 -40 48 -1339 142 -1339 68 -1339 241 -1339 -407 -349 196 -231 -55 -349 152 115 -349 -7 101 82 -1339 -407 -40 136 21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCMBSGGTTCGAYYCCSVK MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 107 E= 2.4e-392 0.168224 0.130841 0.682243 0.018692 0.467290 0.000000 0.532710 0.000000 0.205607 0.084112 0.009346 0.700935 0.000000 0.747664 0.018692 0.233645 0.355140 0.476636 0.149533 0.018692 0.009346 0.289720 0.364486 0.336449 0.046729 0.364486 0.532710 0.056075 0.186916 0.037383 0.747664 0.028037 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.271028 0.000000 0.728972 0.000000 1.000000 0.000000 0.000000 0.000000 0.168224 0.252336 0.140187 0.439252 0.000000 0.495327 0.000000 0.504673 0.000000 0.981308 0.000000 0.018692 0.028037 0.719626 0.037383 0.214953 0.028037 0.532710 0.411215 0.028037 0.299065 0.373832 0.327103 0.000000 0.018692 0.140187 0.476636 0.364486 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCMBSGGTTCGAYYCCSVK MEME-1 regular expression -------------------------------------------------------------------------------- G[GA][TA][CT][CA][GTC][GC]GGTTC[GA]A[TC][TC]C[CT][CG][CGA][GT] -------------------------------------------------------------------------------- Time 357.24 secs. ******************************************************************************** ******************************************************************************** MOTIF DNSSCTTWAMCMACTRRGCCA MEME-2 width = 21 sites = 108 llr = 1652 E-value = 1.0e-294 ******************************************************************************** -------------------------------------------------------------------------------- Motif DNSSCTTWAMCMACTRRGCCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 42::12:464:49::233::a pos.-specific C 1254823:16a4:9:21:98: probability G 3356:1::2::21::4571:: matrix T 23::15652::::1a2:::2: bits 2.4 * 2.2 * * 1.9 * * * 1.7 * ** *** Relative 1.5 * ** **** Entropy 1.2 * * ** *** **** (22.1 bits) 1.0 *** ** *** **** 0.7 *** * ** *** ***** 0.5 *** ** ****** ***** 0.2 * ******************* 0.0 --------------------- Multilevel ATGGCTTTACCCACTGGGCCA consensus GGCC CCA A A AAA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNSSCTTWAMCMACTRRGCCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrV:551043-551625 + 47 1.26e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCTGT chrV:442964-443513 + 60 1.26e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCAAA chrII:197199-197896 - 4 1.26e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGA chrXIV:602105-602543 - 45 1.26e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCATT chrXIV:569633-570165 + 64 1.26e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCACT chrXII:1051843-1052401 + 45 1.26e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCATG chrXVI:819164-819979 - 15 1.26e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCATT chrXIV:104572-105149 - 2 7.71e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA T chrIX:174812-175288 - 38 7.71e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTCG chrVIII:115933-116431 + 20 7.71e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTCT chrX:58720-58820 + 56 7.71e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTTC chrXV:113516-114121 - 41 7.71e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTAA chrIV:433993-434610 + 58 7.71e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTTC chrIX:325480-326124 - 3 7.71e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TA chrVI:191279-191835 + 79 2.84e-10 ATAGCAGGGC ATCGCCTTAACCACTCGGCCA C chrXV:274454-274995 - 6 2.84e-10 ATAGCAGGGC ATCGCCTTAACCACTCGGCCA CTGGG chrXII:784109-784606 - 54 2.84e-10 AATAGCAGGC ATCGCCTTAACCACTCGGCCA CTGGGACGGT chrXII:731880-732264 - 75 4.18e-10 ATCTG ACGCCTTAAACCACTCGGCCA AACTCCCATT chrXV:853955-854459 + 75 7.28e-10 TTGCAAGGGA AGCGCGCTACCAACTGCGCCA TGTGC chrI:182352-182799 + 51 7.28e-10 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCAAA chrXIV:632380-632890 - 21 7.28e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCACT chrXIII:258994-259502 + 14 7.28e-10 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCATA chrVI:137221-137908 + 18 7.28e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCAGT chrVIII:132810-133382 + 34 7.28e-10 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCACT chrV:311761-312319 + 78 7.28e-10 TTGCAAGGGA AGCGCGCTACCAACTGCGCCA TG chrIII:127516-127941 - 45 7.28e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCATT chrXV:228080-228629 - 34 7.28e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTAA chrXII:214655-215188 + 57 7.28e-10 TTGCAAGGGA AGCGCGCTACCAACTGCGCCA TGTGCCCTAA chrII:226837-227395 - 16 7.28e-10 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCTCG chrI:166026-166621 - 1 7.28e-10 TTGCAAGGGA AGCGCGCTACCAACTGCGCCA chrVII:730915-731408 - 33 7.28e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTTT chrXII:975725-976278 + 78 7.28e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TG chrIV:980741-981277 + 69 7.28e-10 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCTCA chrVII:700124-701326 - 7 1.44e-09 CCTCGACCTG ACGCCTTAGACCACTCGGCCA GAGTAC chrIII:227706-228214 - 39 2.31e-09 ATTCGAGTCT CTCGCCTTAACCACTCGGCCA TAGTGCCATT chrVI:204742-205229 + 34 5.54e-09 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCGAA chrX:197150-197250 + 11 5.54e-09 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCTAA chrVII:857212-857684 + 66 5.54e-09 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrXI:517758-518174 - 79 5.54e-09 G AGCGCGCTACCGACTACGCCA CACGCCCATA chrXII:628128-628713 - 20 5.54e-09 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrIV:1461458-1462106 + 70 5.54e-09 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrVII:422862-423382 - 27 5.54e-09 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrI:180917-181470 - 5 5.54e-09 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACA chrII:347376-347924 - 10 8.30e-09 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCGT chrX:424288-424388 + 15 8.30e-09 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCATC chrVII:115205-115786 - 50 9.46e-09 TTAAAAGCCG AACGCTCTACCAACTGAGCTA ACAAGGATGA chrIV:359299-359854 - 58 9.46e-09 TTAAAAGCCG AACGCTCTACCAACTGAGCTA ACAAGGATGA chrXI:578720-579320 - 2 9.46e-09 TTAAAAGCCG AACGCTCTACCAACTGAGCTA A chrXVI:622307-622870 + 66 1.08e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCATA chrVIII:358274-358814 + 48 1.08e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrXIII:352075-352543 - 28 1.08e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrVI:157632-158301 + 64 1.08e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTC chrII:36167-36630 - 57 1.08e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrXVI:559988-560535 + 51 1.08e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTCA chrXIV:374681-375118 - 27 1.08e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AGTCCGCTTA chrVII:412127-412606 + 24 1.77e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCAGT chrXIII:586415-586925 + 62 1.77e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCATA chrXII:687660-688174 + 38 1.77e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCTAT chrXIII:372170-372754 + 79 1.77e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA C chrV:438440-439023 - 26 1.77e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCTAA chrV:469248-469710 - 35 1.77e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCAAT chrVII:823253-823713 - 56 1.77e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCACT chrXI:307971-308431 + 39 1.77e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCACT chrXI:379451-379948 - 38 1.77e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCTAT chrVII:121980-122554 - 59 1.75e-07 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAA chrIV:1352305-1352744 + 37 1.75e-07 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAT chrVII:185462-186024 + 66 1.75e-07 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAT chrVI:226522-226945 + 50 1.75e-07 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCATT chrXIII:480370-480928 + 67 1.75e-07 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAC chrXI:202818-203271 - 12 1.75e-07 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTTT chrV:492184-492616 + 47 2.09e-07 TTCGTAGCCA GACGCCGTGACCATTGGGCCA CGAGGAATAG chrXV:340095-340632 + 31 2.09e-07 TTCGTAGCCA GACGCCGTGACCATTGGGCCA CGAGGAACAG chrXII:605137-605656 + 59 2.09e-07 CTATAAGCAC GAAGCTCTAACCACTGAGCTA CACGAGCATT chrIV:619695-620274 + 80 2.09e-07 TTCGTAGCCA GACGCCGTGACCATTGGGCCA chrXIII:923190-924361 + 45 3.77e-07 TAAATGGAAC AGGGTATAGACCACTGAGGCA AGTGCCGTGC chrXIII:572672-573268 + 8 4.09e-07 TGAGACT GACGCTCTTCCTACTGAGCTA CTGAAGCTGT chrIV:1175576-1176093 - 52 4.09e-07 TTATGAGACT GACGCTCTTCCTACTGAGCTA CTGAAGCTTT chrIV:488512-489170 + 52 4.79e-07 TGTAAAGGCG ACGTCTTGAACCACTGGACCA TTGGACCGGA chrII:326561-327180 + 18 4.79e-07 TGTAAAGGCG ACGTCTTGAACCACTGGACCA TTGGACCCGG chrIV:83306-83825 - 40 5.18e-07 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCTAA chrVII:930723-931242 + 64 5.18e-07 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCTTA chrXVI:571977-572594 - 41 5.18e-07 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCGAA chrIV:992591-993185 - 1 5.18e-07 GATGGCAACG TTGGATTTTACCACTAAACCA chrXIII:183740-184203 + 20 5.18e-07 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCGAT chrXV:226407-226939 + 31 5.18e-07 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCTGA chrX:531484-531584 - 61 5.18e-07 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCTCA chrVI:161988-162451 - 66 5.18e-07 GATGGCAACG TTGGATTTTACCACTAAACCA CTTGCGCTTG chrVII:845344-845918 - 75 5.18e-07 CAACG TTGGATTTTACCACTAAACCA CTTGCGCTTG chrXI:1-1069 - 71 6.03e-07 AAATTGCAC AGGGTATAAACCGCTGAGGCA AGTGCCGTGA chrIX:438693-439886 + 60 1.00e-06 TAAATGGCAC AGGGTATAGACCGCTGAGGCA AGTACCGTGC chrIV:1524095-1525673 + 22 1.00e-06 TAAATGGCAC AGGGTATAGACCGCTGAGGCA AGTGCCGTGT chrI:229159-230193 + 18 1.00e-06 TAAATGGGAC AGGGTATAGACCGCTGAGGCA AGTGCCGTGT chrII:6001-6717 - 48 1.00e-06 TAAATGGCTC AGGGTATAGACCGCTGAGGCA AGTGCCGTGC chrI:3-1109 - 44 1.00e-06 TAAATGGCAC AGGGTATAGACCGCTGAGGCA AGTGCCGTGC chrX:745166-745266 - 47 1.40e-06 ACCCTCCAAT TACCCATATCCAACTCCACTA CCATTACCCT chrXII:10993-12024 + 73 1.40e-06 ACCCTCCAAT TACCCATATCCAACTCCACTA CCGCTTA chrXII:468734-468996 - 47 1.50e-06 CTACTCGGTC AGGCTCTTACCAGCTTAACTA CAGTTGATCG chrXII:489284-489567 - 23 1.50e-06 CTACTCGGTC AGGCTCTTACCAGCTTAACTA CAGTTGATCG chrXV:287991-288402 - 53 1.60e-06 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGAAG chrXIII:168580-169089 - 18 1.60e-06 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGTGA chrVI:167252-167722 - 7 1.60e-06 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGA chrI:138882-139384 - 76 1.70e-06 AAGC GAGAATCATACCACTAGACCA CACGCCCGTA chrXV:300827-301431 - 25 1.70e-06 CGCCCAAAGC GAGAATCATACCACTAGACCA CACGCCCGAT chrVIII:388653-389226 + 79 1.70e-06 CGCCCAAAGC GAGAATCATACCACTAGACCA C chrXV:464221-464754 - 20 1.70e-06 CGCCCAAAGC GAGAATCATACCACTAGACCA CACGCCCTTG chrI:142082-143693 + 33 3.46e-06 CGCTAAGAAG GCTGCTAAGCCAGCTAAGCCA GCTGCTAAGT chrIV:28-413 + 66 3.46e-06 TCCCCACTCG TTACCCTGCCCCACTCAACCA TCCACTCCCA chrIV:1256859-1257313 + 16 4.30e-06 TTGGGAAGCA TGAATTCTAACCACTGAACCA CTTTCGCTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNSSCTTWAMCMACTRRGCCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:551043-551625 1.3e-11 46_[+2]_33 chrV:442964-443513 1.3e-11 59_[+2]_20 chrII:197199-197896 1.3e-11 3_[-2]_76 chrXIV:602105-602543 1.3e-11 44_[-2]_35 chrXIV:569633-570165 1.3e-11 63_[+2]_16 chrXII:1051843-1052401 1.3e-11 44_[+2]_35 chrXVI:819164-819979 1.3e-11 14_[-2]_65 chrXIV:104572-105149 7.7e-11 1_[-2]_78 chrIX:174812-175288 7.7e-11 37_[-2]_42 chrVIII:115933-116431 7.7e-11 19_[+2]_60 chrX:58720-58820 7.7e-11 55_[+2]_24 chrXV:113516-114121 7.7e-11 40_[-2]_39 chrIV:433993-434610 7.7e-11 57_[+2]_22 chrIX:325480-326124 7.7e-11 2_[-2]_77 chrVI:191279-191835 2.8e-10 78_[+2]_1 chrXV:274454-274995 2.8e-10 5_[-2]_74 chrXII:784109-784606 2.8e-10 53_[-2]_26 chrXII:731880-732264 4.2e-10 74_[-2]_5 chrXV:853955-854459 7.3e-10 74_[+2]_5 chrI:182352-182799 7.3e-10 50_[+2]_29 chrXIV:632380-632890 7.3e-10 20_[-2]_59 chrXIII:258994-259502 7.3e-10 13_[+2]_66 chrVI:137221-137908 7.3e-10 17_[+2]_62 chrVIII:132810-133382 7.3e-10 33_[+2]_46 chrV:311761-312319 7.3e-10 77_[+2]_2 chrIII:127516-127941 7.3e-10 44_[-2]_35 chrXV:228080-228629 7.3e-10 33_[-2]_46 chrXII:214655-215188 7.3e-10 56_[+2]_23 chrII:226837-227395 7.3e-10 15_[-2]_64 chrI:166026-166621 7.3e-10 [-2]_79 chrVII:730915-731408 7.3e-10 32_[-2]_47 chrXII:975725-976278 7.3e-10 77_[+2]_2 chrIV:980741-981277 7.3e-10 68_[+2]_11 chrVII:700124-701326 1.4e-09 6_[-2]_73 chrIII:227706-228214 2.3e-09 38_[-2]_41 chrVI:204742-205229 5.5e-09 33_[+2]_46 chrX:197150-197250 5.5e-09 10_[+2]_69 chrVII:857212-857684 5.5e-09 65_[+2]_14 chrXI:517758-518174 5.5e-09 78_[-2]_1 chrXII:628128-628713 5.5e-09 19_[-2]_60 chrIV:1461458-1462106 5.5e-09 69_[+2]_10 chrVII:422862-423382 5.5e-09 26_[-2]_53 chrI:180917-181470 5.5e-09 4_[-2]_75 chrII:347376-347924 8.3e-09 9_[-2]_70 chrX:424288-424388 8.3e-09 14_[+2]_65 chrVII:115205-115786 9.5e-09 49_[-2]_30 chrIV:359299-359854 9.5e-09 57_[-2]_22 chrXI:578720-579320 9.5e-09 1_[-2]_78 chrXVI:622307-622870 1.1e-08 65_[+2]_14 chrVIII:358274-358814 1.1e-08 47_[+2]_32 chrXIII:352075-352543 1.1e-08 27_[-2]_52 chrVI:157632-158301 1.1e-08 63_[+2]_16 chrII:36167-36630 1.1e-08 56_[-2]_23 chrXVI:559988-560535 1.1e-08 50_[+2]_29 chrXIV:374681-375118 1.1e-08 26_[-2]_53 chrVII:412127-412606 1.8e-08 23_[+2]_56 chrXIII:586415-586925 1.8e-08 61_[+2]_18 chrXII:687660-688174 1.8e-08 37_[+2]_42 chrXIII:372170-372754 1.8e-08 78_[+2]_1 chrV:438440-439023 1.8e-08 25_[-2]_54 chrV:469248-469710 1.8e-08 34_[-2]_45 chrVII:823253-823713 1.8e-08 55_[-2]_24 chrXI:307971-308431 1.8e-08 38_[+2]_41 chrXI:379451-379948 1.8e-08 37_[-2]_42 chrVII:121980-122554 1.8e-07 58_[-2]_21 chrIV:1352305-1352744 1.8e-07 36_[+2]_43 chrVII:185462-186024 1.8e-07 65_[+2]_14 chrVI:226522-226945 1.8e-07 49_[+2]_30 chrXIII:480370-480928 1.8e-07 66_[+2]_13 chrXI:202818-203271 1.8e-07 11_[-2]_68 chrV:492184-492616 2.1e-07 46_[+2]_33 chrXV:340095-340632 2.1e-07 30_[+2]_49 chrXII:605137-605656 2.1e-07 58_[+2]_21 chrIV:619695-620274 2.1e-07 79_[+2] chrXIII:923190-924361 3.8e-07 44_[+2]_35 chrXIII:572672-573268 4.1e-07 7_[+2]_72 chrIV:1175576-1176093 4.1e-07 51_[-2]_28 chrIV:488512-489170 4.8e-07 51_[+2]_28 chrII:326561-327180 4.8e-07 17_[+2]_62 chrIV:83306-83825 5.2e-07 39_[-2]_40 chrVII:930723-931242 5.2e-07 63_[+2]_16 chrXVI:571977-572594 5.2e-07 40_[-2]_39 chrIV:992591-993185 5.2e-07 [-2]_79 chrXIII:183740-184203 5.2e-07 19_[+2]_60 chrXV:226407-226939 5.2e-07 30_[+2]_49 chrX:531484-531584 5.2e-07 60_[-2]_19 chrVI:161988-162451 5.2e-07 65_[-2]_14 chrVII:845344-845918 5.2e-07 74_[-2]_5 chrXI:1-1069 6e-07 70_[-2]_9 chrIX:438693-439886 1e-06 59_[+2]_20 chrIV:1524095-1525673 1e-06 21_[+2]_58 chrI:229159-230193 1e-06 17_[+2]_62 chrII:6001-6717 1e-06 47_[-2]_32 chrI:3-1109 1e-06 43_[-2]_36 chrX:745166-745266 1.4e-06 46_[-2]_33 chrXII:10993-12024 1.4e-06 72_[+2]_7 chrXII:468734-468996 1.5e-06 46_[-2]_33 chrXII:489284-489567 1.5e-06 22_[-2]_57 chrXV:287991-288402 1.6e-06 52_[-2]_27 chrXIII:168580-169089 1.6e-06 17_[-2]_62 chrVI:167252-167722 1.6e-06 6_[-2]_73 chrI:138882-139384 1.7e-06 75_[-2]_4 chrXV:300827-301431 1.7e-06 24_[-2]_55 chrVIII:388653-389226 1.7e-06 78_[+2]_1 chrXV:464221-464754 1.7e-06 19_[-2]_60 chrI:142082-143693 3.5e-06 32_[+2]_47 chrIV:28-413 3.5e-06 65_[+2]_14 chrIV:1256859-1257313 4.3e-06 15_[+2]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNSSCTTWAMCMACTRRGCCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DNSSCTTWAMCMACTRRGCCA width=21 seqs=108 chrV:551043-551625 ( 47) GTGCCTTAACCAACTGGGCCA 1 chrV:442964-443513 ( 60) GTGCCTTAACCAACTGGGCCA 1 chrII:197199-197896 ( 4) GTGCCTTAACCAACTGGGCCA 1 chrXIV:602105-602543 ( 45) GTGCCTTAACCAACTGGGCCA 1 chrXIV:569633-570165 ( 64) GTGCCTTAACCAACTGGGCCA 1 chrXII:1051843-1052401 ( 45) GTGCCTTAACCAACTGGGCCA 1 chrXVI:819164-819979 ( 15) GTGCCTTAACCAACTGGGCCA 1 chrXIV:104572-105149 ( 2) GGCGCCTTACCAACTTGGCCA 1 chrIX:174812-175288 ( 38) GGCGCCTTACCAACTTGGCCA 1 chrVIII:115933-116431 ( 20) GGCGCCTTACCAACTTGGCCA 1 chrX:58720-58820 ( 56) GGCGCCTTACCAACTTGGCCA 1 chrXV:113516-114121 ( 41) GGCGCCTTACCAACTTGGCCA 1 chrIV:433993-434610 ( 58) GGCGCCTTACCAACTTGGCCA 1 chrIX:325480-326124 ( 3) GGCGCCTTACCAACTTGGCCA 1 chrVI:191279-191835 ( 79) ATCGCCTTAACCACTCGGCCA 1 chrXV:274454-274995 ( 6) ATCGCCTTAACCACTCGGCCA 1 chrXII:784109-784606 ( 54) ATCGCCTTAACCACTCGGCCA 1 chrXII:731880-732264 ( 75) ACGCCTTAAACCACTCGGCCA 1 chrXV:853955-854459 ( 75) AGCGCGCTACCAACTGCGCCA 1 chrI:182352-182799 ( 51) TTCGCCTTAACCACTCGGCCA 1 chrXIV:632380-632890 ( 21) ACGCCTTAACCAACTTGGCCA 1 chrXIII:258994-259502 ( 14) TTCGCCTTAACCACTCGGCCA 1 chrVI:137221-137908 ( 18) ACGCCTTAACCAACTTGGCCA 1 chrVIII:132810-133382 ( 34) TTCGCCTTAACCACTCGGCCA 1 chrV:311761-312319 ( 78) AGCGCGCTACCAACTGCGCCA 1 chrIII:127516-127941 ( 45) ACGCCTTAACCAACTTGGCCA 1 chrXV:228080-228629 ( 34) ACGCCTTAACCAACTTGGCCA 1 chrXII:214655-215188 ( 57) AGCGCGCTACCAACTGCGCCA 1 chrII:226837-227395 ( 16) TTCGCCTTAACCACTCGGCCA 1 chrI:166026-166621 ( 1) AGCGCGCTACCAACTGCGCCA 1 chrVII:730915-731408 ( 33) ACGCCTTAACCAACTTGGCCA 1 chrXII:975725-976278 ( 78) ACGCCTTAACCAACTTGGCCA 1 chrIV:980741-981277 ( 69) TTCGCCTTAACCACTCGGCCA 1 chrVII:700124-701326 ( 7) ACGCCTTAGACCACTCGGCCA 1 chrIII:227706-228214 ( 39) CTCGCCTTAACCACTCGGCCA 1 chrVI:204742-205229 ( 34) AGCGCGCTACCGACTACGCCA 1 chrX:197150-197250 ( 11) AGCGCGCTACCGACTACGCCA 1 chrVII:857212-857684 ( 66) GCGCCTTAGACCGCTCGGCCA 1 chrXI:517758-518174 ( 79) AGCGCGCTACCGACTACGCCA 1 chrXII:628128-628713 ( 20) GCGCCTTAGACCGCTCGGCCA 1 chrIV:1461458-1462106 ( 70) GCGCCTTAGACCGCTCGGCCA 1 chrVII:422862-423382 ( 27) GCGCCTTAGACCGCTCGGCCA 1 chrI:180917-181470 ( 5) GCGCCTTAGACCGCTCGGCCA 1 chrII:347376-347924 ( 10) CCGCCTTAGACCACTCGGCCA 1 chrX:424288-424388 ( 15) CCGCCTTAGACCACTCGGCCA 1 chrVII:115205-115786 ( 50) AACGCTCTACCAACTGAGCTA 1 chrIV:359299-359854 ( 58) AACGCTCTACCAACTGAGCTA 1 chrXI:578720-579320 ( 2) AACGCTCTACCAACTGAGCTA 1 chrXVI:622307-622870 ( 66) GGCGCTCTCCCAACTGAGCTA 1 chrVIII:358274-358814 ( 48) GGCGCTCTCCCAACTGAGCTA 1 chrXIII:352075-352543 ( 28) GGCGCTCTCCCAACTGAGCTA 1 chrVI:157632-158301 ( 64) GGCGCTCTCCCAACTGAGCTA 1 chrII:36167-36630 ( 57) GGCGCTCTCCCAACTGAGCTA 1 chrXVI:559988-560535 ( 51) GGCGCTCTCCCAACTGAGCTA 1 chrXIV:374681-375118 ( 27) GGCGCTCTCCCAACTGAGCTA 1 chrVII:412127-412606 ( 24) ATGCCATAACCGACTAGACCA 1 chrXIII:586415-586925 ( 62) ATGCCATAACCGACTAGACCA 1 chrXII:687660-688174 ( 38) ATGCCATAACCGACTAGACCA 1 chrXIII:372170-372754 ( 79) ATGCCATAACCGACTAGACCA 1 chrV:438440-439023 ( 26) ATGCCATAACCGACTAGACCA 1 chrV:469248-469710 ( 35) ATGCCATAACCGACTAGACCA 1 chrVII:823253-823713 ( 56) ATGCCATAACCGACTAGACCA 1 chrXI:307971-308431 ( 39) ATGCCATAACCGACTAGACCA 1 chrXI:379451-379948 ( 38) ATGCCATAACCGACTAGACCA 1 chrVII:121980-122554 ( 59) TACGCGCTACCGATTGCGCCA 1 chrIV:1352305-1352744 ( 37) TACGCGCTACCGATTGCGCCA 1 chrVII:185462-186024 ( 66) TACGCGCTACCGATTGCGCCA 1 chrVI:226522-226945 ( 50) TACGCGCTACCGATTGCGCCA 1 chrXIII:480370-480928 ( 67) TACGCGCTACCGATTGCGCCA 1 chrXI:202818-203271 ( 12) TACGCGCTACCGATTGCGCCA 1 chrV:492184-492616 ( 47) GACGCCGTGACCATTGGGCCA 1 chrXV:340095-340632 ( 31) GACGCCGTGACCATTGGGCCA 1 chrXII:605137-605656 ( 59) GAAGCTCTAACCACTGAGCTA 1 chrIV:619695-620274 ( 80) GACGCCGTGACCATTGGGCCA 1 chrXIII:923190-924361 ( 45) AGGGTATAGACCACTGAGGCA 1 chrXIII:572672-573268 ( 8) GACGCTCTTCCTACTGAGCTA 1 chrIV:1175576-1176093 ( 52) GACGCTCTTCCTACTGAGCTA 1 chrIV:488512-489170 ( 52) ACGTCTTGAACCACTGGACCA 1 chrII:326561-327180 ( 18) ACGTCTTGAACCACTGGACCA 1 chrIV:83306-83825 ( 40) TTGGATTTTACCACTAAACCA 1 chrVII:930723-931242 ( 64) TTGGATTTTACCACTAAACCA 1 chrXVI:571977-572594 ( 41) TTGGATTTTACCACTAAACCA 1 chrIV:992591-993185 ( 1) TTGGATTTTACCACTAAACCA 1 chrXIII:183740-184203 ( 20) TTGGATTTTACCACTAAACCA 1 chrXV:226407-226939 ( 31) TTGGATTTTACCACTAAACCA 1 chrX:531484-531584 ( 61) TTGGATTTTACCACTAAACCA 1 chrVI:161988-162451 ( 66) TTGGATTTTACCACTAAACCA 1 chrVII:845344-845918 ( 75) TTGGATTTTACCACTAAACCA 1 chrXI:1-1069 ( 71) AGGGTATAAACCGCTGAGGCA 1 chrIX:438693-439886 ( 60) AGGGTATAGACCGCTGAGGCA 1 chrIV:1524095-1525673 ( 22) AGGGTATAGACCGCTGAGGCA 1 chrI:229159-230193 ( 18) AGGGTATAGACCGCTGAGGCA 1 chrII:6001-6717 ( 48) AGGGTATAGACCGCTGAGGCA 1 chrI:3-1109 ( 44) AGGGTATAGACCGCTGAGGCA 1 chrX:745166-745266 ( 47) TACCCATATCCAACTCCACTA 1 chrXII:10993-12024 ( 73) TACCCATATCCAACTCCACTA 1 chrXII:468734-468996 ( 47) AGGCTCTTACCAGCTTAACTA 1 chrXII:489284-489567 ( 23) AGGCTCTTACCAGCTTAACTA 1 chrXV:287991-288402 ( 53) CGCCTTAAACCAACTTGGCTA 1 chrXIII:168580-169089 ( 18) CGCCTTAAACCAACTTGGCTA 1 chrVI:167252-167722 ( 7) CGCCTTAAACCAACTTGGCTA 1 chrI:138882-139384 ( 76) GAGAATCATACCACTAGACCA 1 chrXV:300827-301431 ( 25) GAGAATCATACCACTAGACCA 1 chrVIII:388653-389226 ( 79) GAGAATCATACCACTAGACCA 1 chrXV:464221-464754 ( 20) GAGAATCATACCACTAGACCA 1 chrI:142082-143693 ( 33) GCTGCTAAGCCAGCTAAGCCA 1 chrIV:28-413 ( 66) TTACCCTGCCCCACTCAACCA 1 chrIV:1256859-1257313 ( 16) TGAATTCTAACCACTGAACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNSSCTTWAMCMACTRRGCCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 9.36269 E= 1.0e-294 27 -174 89 -50 -69 -15 77 4 -350 129 146 -508 -276 96 163 -409 -139 204 -1340 -139 -92 14 -62 69 -309 63 -274 104 50 -1340 -274 75 93 -132 -15 -100 40 166 -1340 -1340 -1340 243 -1340 -1340 30 120 -15 -409 147 -1340 -51 -1340 -1340 231 -1340 -192 -1340 -1340 -1340 167 -39 7 110 -92 0 -42 156 -1340 -18 -1340 196 -1340 -1340 234 -151 -1340 -1340 214 -1340 -77 167 -1340 -1340 -1340 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNSSCTTWAMCMACTRRGCCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 108 E= 1.0e-294 0.379630 0.055556 0.342593 0.222222 0.194444 0.166667 0.314815 0.324074 0.027778 0.453704 0.509259 0.009259 0.046296 0.361111 0.574074 0.018519 0.120370 0.759259 0.000000 0.120370 0.166667 0.203704 0.120370 0.509259 0.037037 0.287037 0.027778 0.648148 0.444444 0.000000 0.027778 0.527778 0.601852 0.074074 0.166667 0.157407 0.416667 0.583333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.388889 0.425926 0.166667 0.018519 0.870370 0.000000 0.129630 0.000000 0.000000 0.916667 0.000000 0.083333 0.000000 0.000000 0.000000 1.000000 0.240741 0.194444 0.398148 0.166667 0.314815 0.138889 0.546296 0.000000 0.277778 0.000000 0.722222 0.000000 0.000000 0.935185 0.064815 0.000000 0.000000 0.814815 0.000000 0.185185 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DNSSCTTWAMCMACTRRGCCA MEME-2 regular expression -------------------------------------------------------------------------------- [AGT][TG][GC][GC]C[TC][TC][TA]A[CA]C[CA]ACT[GA][GA][GA]CCA -------------------------------------------------------------------------------- Time 679.33 secs. ******************************************************************************** ******************************************************************************** MOTIF AMAACSKNMYRTKMTAACCRYTACACTATA MEME-3 width = 30 sites = 32 llr = 787 E-value = 1.5e-148 ******************************************************************************** -------------------------------------------------------------------------------- Motif AMAACSKNMYRTKMTAACCRYTACACTATA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 9498::12524:16:87::6::a39::916 pos.-specific C :51:76:344:114:::aa:3::61a:123 probability G :1:234631:6:5::33::4:::::::::1 matrix T 1:::::32:4:93:a:::::7a:1::a:7: bits 2.4 ** * 2.2 ** * 1.9 ** * 1.7 * ** ** ** Relative 1.5 ** * ** ** ** Entropy 1.2 * * ** ** * ** ** **** (35.5 bits) 1.0 * **** ** ********** **** 0.7 ******* * ** **************** 0.5 ******* ********************** 0.2 ****************************** 0.0 ------------------------------ Multilevel ACAACCGCACGTGATAACCATTACACTATA consensus A GGGTGCTA TC GG GC A C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAACSKNMYRTKMTAACCRYTACACTATA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrIV:802528-803038 + 35 6.81e-14 TGTCCGGATC AAAACCGAAAGTGATAACCACTACACTATA GGACCGACAA chrIII:168059-168627 + 45 6.81e-14 TGTCCGGATC AAAACCGAAAGTGATAACCACTACACTATA GGACCAGGAC chrII:350548-351128 - 44 6.81e-14 TGTCCGGATC AAAACCGAAAGTGATAACCACTACACTATA AAACCCTTTT chrXII:448486-448987 + 1 6.81e-14 . AAAACCGAAAGTGATAACCACTACACTATA GGACCGGAAC chrVIII:134041-134649 - 31 6.81e-14 TGTCCGGATC AAAACCGAAAGTGATAACCACTACACTATA GGACCGGAAC chrV:130837-131400 + 51 6.81e-14 TGTTCGGATC AAAACCGAAAGTGATAACCACTACACTATA AAACCTCTTA chrII:644959-645441 - 22 1.51e-13 CTCCACGGTG AAAGCGTGATGTGATAGCCGTTACACTATA TCGGATAATA chrV:487125-487644 + 34 1.51e-13 CTCCACGGTG AAAGCGTGATGTGATAGCCGTTACACTATA TCGGATTAAA chrXIII:290485-291137 - 45 1.51e-13 CTCCACGGTG AAAGCGTGATGTGATAGCCGTTACACTATA TCGGATTATA chrVII:541605-542195 - 5 1.51e-13 CTCCACGGTG AAAGCGTGATGTGATAGCCGTTACACTATA TCGG chrIX:370208-370658 - 39 1.51e-13 CTCCACGGTG AAAGCGTGATGTGATAGCCGTTACACTATA TCGGATTATA chrV:176817-177454 - 19 1.51e-13 CTCCACGGTG AAAGCGTGATGTGATAGCCGTTACACTATA TCGGATCAAA chrX:115696-115796 + 55 1.51e-13 CTCCACGGTG AAAGCGTGATGTGATAGCCGTTACACTATA TCGGATTATA chrIX:197323-197968 - 2 5.45e-13 CTCCACGGTG AGAACGTGATGTGATAGCCGTTACACTACA T chrIV:1016933-1017523 + 66 5.45e-13 CTCCACGGTG AGAACGTGATGTGATAGCCGTTACACTACA TCGGA chrIV:568627-569289 - 61 1.48e-12 CTGGCACGCG ACAAGCGCCCATTCTGACCATTAAACTATC ACGGAAGAAA chrIX:336109-336670 + 47 1.48e-12 CTGGCACGCG ACAAGCGCCCATTCTGACCATTAAACTATC ACGGATTTGT chrXIII:463270-463927 - 11 1.48e-12 CTGGCACGCG ACAAGCGCCCATTCTGACCATTAAACTATC ACGGACAAAT chrVII:531423-531809 - 49 1.48e-12 CTGGCACGCG ACAAGCGCCCATTCTGACCATTAAACTATC ACGGAAGTAA chrXV:571678-572258 - 45 1.48e-12 CTGGCACGCG ACAAGCGCCCATTCTGACCATTAAACTATC ACGGATTTTA chrXII:426906-427433 - 18 1.48e-12 CTGGCACGCG ACAAGCGCCCATTCTGACCATTAAACTATC ACGGATAAGA chrX:204435-204535 - 62 1.48e-12 TGGCACGCG ACAAGCGCCCATTCTGACCATTAAACTATC ACGGATTTTT chrIX:324030-324643 + 54 1.48e-12 CTGGCACGCG ACAAGCGCCCATTCTGACCATTAAACTATC ACGGAATATT chrXIV:783357-784322 - 60 2.90e-11 CTTACCACTA ACCACCGCCCACCATAACCGTTACCCTCCA ATTACCCATA chrXIV:6484-7203 + 44 4.37e-11 ACTACTACCA TCCACCGCCCATCATAACCGTTACCCTCCA ATTACCCAAA chrXII:10993-12024 + 41 5.98e-11 CTTACCACTA ACCACCGTCCACCATAACCGTTACCCTCCA ATTACCCATA chrXIII:362820-363396 - 11 1.77e-10 TTCATCGGCC ACAACGATGTGTACTAACCACTATACTAAG ATGGCAAACT chrVII:110393-110949 + 41 1.77e-10 TTCATCGGCC ACAACGATGTGTACTAACCACTATACTAAG ATGGCAGGTA chrVIII:62481-62997 - 71 1.77e-10 . ACAACGATGTGTACTAACCACTATACTAAG ATGGCATATG chrV:434367-434794 + 48 1.77e-10 TTCATCGGCC ACAACGATGTGTACTAACCACTATACTAAG ATGGCGACTT chrX:745166-745266 - 70 1.92e-10 A TCCACCGTCCACCATAACCGTTACCCTCCA ATTACCCATA chrIV:1075281-1075782 + 29 2.00e-10 CTTTGCCGTG TGAAGGCAACGTGATAGCCGCTACACTATT GGAACAATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAACSKNMYRTKMTAACCRYTACACTATA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:802528-803038 6.8e-14 34_[+3]_36 chrIII:168059-168627 6.8e-14 44_[+3]_26 chrII:350548-351128 6.8e-14 43_[-3]_27 chrXII:448486-448987 6.8e-14 [+3]_70 chrVIII:134041-134649 6.8e-14 30_[-3]_40 chrV:130837-131400 6.8e-14 50_[+3]_20 chrII:644959-645441 1.5e-13 21_[-3]_49 chrV:487125-487644 1.5e-13 33_[+3]_37 chrXIII:290485-291137 1.5e-13 44_[-3]_26 chrVII:541605-542195 1.5e-13 4_[-3]_66 chrIX:370208-370658 1.5e-13 38_[-3]_32 chrV:176817-177454 1.5e-13 18_[-3]_52 chrX:115696-115796 1.5e-13 54_[+3]_16 chrIX:197323-197968 5.4e-13 1_[-3]_69 chrIV:1016933-1017523 5.4e-13 65_[+3]_5 chrIV:568627-569289 1.5e-12 60_[-3]_10 chrIX:336109-336670 1.5e-12 46_[+3]_24 chrXIII:463270-463927 1.5e-12 10_[-3]_60 chrVII:531423-531809 1.5e-12 48_[-3]_22 chrXV:571678-572258 1.5e-12 44_[-3]_26 chrXII:426906-427433 1.5e-12 17_[-3]_53 chrX:204435-204535 1.5e-12 61_[-3]_9 chrIX:324030-324643 1.5e-12 53_[+3]_17 chrXIV:783357-784322 2.9e-11 59_[-3]_11 chrXIV:6484-7203 4.4e-11 43_[+3]_27 chrXII:10993-12024 6e-11 40_[+3]_30 chrXIII:362820-363396 1.8e-10 10_[-3]_60 chrVII:110393-110949 1.8e-10 40_[+3]_30 chrVIII:62481-62997 1.8e-10 70_[-3] chrV:434367-434794 1.8e-10 47_[+3]_23 chrX:745166-745266 1.9e-10 69_[-3]_1 chrIV:1075281-1075782 2e-10 28_[+3]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAACSKNMYRTKMTAACCRYTACACTATA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AMAACSKNMYRTKMTAACCRYTACACTATA width=30 seqs=32 chrIV:802528-803038 ( 35) AAAACCGAAAGTGATAACCACTACACTATA 1 chrIII:168059-168627 ( 45) AAAACCGAAAGTGATAACCACTACACTATA 1 chrII:350548-351128 ( 44) AAAACCGAAAGTGATAACCACTACACTATA 1 chrXII:448486-448987 ( 1) AAAACCGAAAGTGATAACCACTACACTATA 1 chrVIII:134041-134649 ( 31) AAAACCGAAAGTGATAACCACTACACTATA 1 chrV:130837-131400 ( 51) AAAACCGAAAGTGATAACCACTACACTATA 1 chrII:644959-645441 ( 22) AAAGCGTGATGTGATAGCCGTTACACTATA 1 chrV:487125-487644 ( 34) AAAGCGTGATGTGATAGCCGTTACACTATA 1 chrXIII:290485-291137 ( 45) AAAGCGTGATGTGATAGCCGTTACACTATA 1 chrVII:541605-542195 ( 5) AAAGCGTGATGTGATAGCCGTTACACTATA 1 chrIX:370208-370658 ( 39) AAAGCGTGATGTGATAGCCGTTACACTATA 1 chrV:176817-177454 ( 19) AAAGCGTGATGTGATAGCCGTTACACTATA 1 chrX:115696-115796 ( 55) AAAGCGTGATGTGATAGCCGTTACACTATA 1 chrIX:197323-197968 ( 2) AGAACGTGATGTGATAGCCGTTACACTACA 1 chrIV:1016933-1017523 ( 66) AGAACGTGATGTGATAGCCGTTACACTACA 1 chrIV:568627-569289 ( 61) ACAAGCGCCCATTCTGACCATTAAACTATC 1 chrIX:336109-336670 ( 47) ACAAGCGCCCATTCTGACCATTAAACTATC 1 chrXIII:463270-463927 ( 11) ACAAGCGCCCATTCTGACCATTAAACTATC 1 chrVII:531423-531809 ( 49) ACAAGCGCCCATTCTGACCATTAAACTATC 1 chrXV:571678-572258 ( 45) ACAAGCGCCCATTCTGACCATTAAACTATC 1 chrXII:426906-427433 ( 18) ACAAGCGCCCATTCTGACCATTAAACTATC 1 chrX:204435-204535 ( 62) ACAAGCGCCCATTCTGACCATTAAACTATC 1 chrIX:324030-324643 ( 54) ACAAGCGCCCATTCTGACCATTAAACTATC 1 chrXIV:783357-784322 ( 60) ACCACCGCCCACCATAACCGTTACCCTCCA 1 chrXIV:6484-7203 ( 44) TCCACCGCCCATCATAACCGTTACCCTCCA 1 chrXII:10993-12024 ( 41) ACCACCGTCCACCATAACCGTTACCCTCCA 1 chrXIII:362820-363396 ( 11) ACAACGATGTGTACTAACCACTATACTAAG 1 chrVII:110393-110949 ( 41) ACAACGATGTGTACTAACCACTATACTAAG 1 chrVIII:62481-62997 ( 71) ACAACGATGTGTACTAACCACTATACTAAG 1 chrV:434367-434794 ( 48) ACAACGATGTGTACTAACCACTATACTAAG 1 chrX:745166-745266 ( 70) TCCACCGTCCACCATAACCGTTACCCTCCA 1 chrIV:1075281-1075782 ( 29) TGAAGGCAACGTGATAGCCGCTACACTATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAACSKNMYRTKMTAACCRYTACACTATA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 10.3775 E= 1.5e-148 153 -1164 -1164 -175 37 143 -98 -1164 147 -57 -1164 -1164 131 -1164 24 -1164 -1164 196 60 -1164 -1164 160 124 -1164 -133 -256 160 -16 -52 75 60 -75 67 102 -57 -1164 -75 113 -1164 37 25 -1164 175 -1164 -1164 -98 -1164 153 -133 -57 143 -33 99 102 -1164 -1164 -1164 -1164 -1164 167 125 -1164 43 -1164 113 -1164 75 -1164 -1164 243 -1164 -1164 -1164 243 -1164 -1164 84 -1164 124 -1164 -1164 89 -1164 106 -1164 -1164 -1164 167 167 -1164 -1164 -1164 -33 175 -1164 -133 147 -57 -1164 -1164 -1164 243 -1164 -1164 -1164 -1164 -1164 167 147 -57 -1164 -1164 -133 2 -1164 113 92 43 -57 -333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAACSKNMYRTKMTAACCRYTACACTATA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 32 E= 1.5e-148 0.906250 0.000000 0.000000 0.093750 0.406250 0.500000 0.093750 0.000000 0.875000 0.125000 0.000000 0.000000 0.781250 0.000000 0.218750 0.000000 0.000000 0.718750 0.281250 0.000000 0.000000 0.562500 0.437500 0.000000 0.125000 0.031250 0.562500 0.281250 0.218750 0.312500 0.281250 0.187500 0.500000 0.375000 0.125000 0.000000 0.187500 0.406250 0.000000 0.406250 0.375000 0.000000 0.625000 0.000000 0.000000 0.093750 0.000000 0.906250 0.125000 0.125000 0.500000 0.250000 0.625000 0.375000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.750000 0.000000 0.250000 0.000000 0.687500 0.000000 0.312500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.562500 0.000000 0.437500 0.000000 0.000000 0.343750 0.000000 0.656250 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.625000 0.000000 0.125000 0.875000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.875000 0.125000 0.000000 0.000000 0.125000 0.187500 0.000000 0.687500 0.593750 0.250000 0.125000 0.031250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAACSKNMYRTKMTAACCRYTACACTATA MEME-3 regular expression -------------------------------------------------------------------------------- A[CA]A[AG][CG][CG][GT][CGA][AC][CT][GA]T[GT][AC]T[AG][AG]CC[AG][TC]TA[CA]ACTAT[AC] -------------------------------------------------------------------------------- Time 981.38 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:237677-238815 9.99e-01 100 chrVIII:103854-106028 6.49e-01 100 chrXIV:715979-716649 3.11e-01 100 chrVI:223262-224174 3.19e-01 100 chrXI:67791-68367 7.31e-01 100 chrI:151319-151956 6.13e-01 100 chrIV:1256859-1257313 2.78e-05 15_[+2(4.30e-06)]_64 chrXVI:821640-822147 9.48e-01 100 chrXIII:420296-420903 3.97e-06 46_[-1(3.22e-09)]_33 chrVII:345880-346640 7.35e-01 100 chrVII:254064-254727 6.59e-01 100 chrXI:162027-162790 4.30e-01 100 chrIV:519534-521400 3.52e-01 100 chrIII:81984-82789 9.74e-01 100 chrXVI:406165-407810 5.97e-01 100 chrIV:980741-981277 1.96e-08 22_[-1(5.31e-05)]_25_[+2(7.28e-10)]_\ 11 chrXI:379451-379948 2.08e-10 37_[-2(1.77e-08)]_17_[+1(3.22e-09)]_\ 4 chrIX:324030-324643 8.26e-16 24_[-1(6.16e-09)]_8_[+3(1.48e-12)]_\ 17 chrXIV:374681-375118 9.14e-06 26_[-2(1.08e-08)]_53 chrIV:835728-836280 6.30e-01 100 chrXII:167664-168701 7.67e-01 100 chrIX:300019-300744 6.41e-01 100 chrI:3-1109 4.86e-03 43_[-2(1.00e-06)]_36 chrXI:307971-308431 2.08e-10 [-1(3.22e-09)]_17_[+2(1.77e-08)]_41 chrXVI:209689-210589 9.86e-01 100 chrVII:287082-287750 2.46e-01 100 chrXV:725094-725643 7.48e-01 100 chrXI:578720-579320 2.59e-10 1_[-2(9.46e-09)]_39_[+1(3.60e-09)]_\ 18 chrVII:766188-766437 1.49e-01 100 chrXV:842362-842919 9.41e-01 100 chrXII:975725-976278 1.38e-10 39_[-1(5.90e-08)]_17_[+2(7.28e-10)]_\ 2 chrV:130837-131400 1.66e-17 21_[-1(2.57e-09)]_8_[+3(6.81e-14)]_\ 20 chrXVI:627344-627629 5.10e-01 100 chrII:555500-558493 1.06e-01 100 chrIV:619695-620274 2.15e-07 42_[-1(2.29e-07)]_16_[+2(2.09e-07)] chrXV:677911-679235 8.09e-01 100 chrIV:884144-884734 2.62e-05 75_[+1(1.64e-08)]_4 chrXIII:549875-553254 5.45e-01 100 chrVI:222843-223033 9.05e-02 100 chrXII:605137-605656 1.72e-07 58_[+2(2.09e-07)]_21 chrVIII:134041-134649 1.66e-17 30_[-3(6.81e-14)]_8_[+1(2.57e-09)]_\ 11 chrX:424288-424388 1.82e-05 14_[+2(8.30e-09)]_65 chrVII:228534-228833 9.13e-01 100 chrVIII:381436-383506 6.56e-01 100 chrXII:734697-735680 5.43e-01 100 chrXIII:91574-92089 8.51e-01 100 chrXIII:923190-924361 6.26e-04 44_[+2(3.77e-07)]_35 chrXIV:575078-576124 9.70e-01 100 chrVII:316522-317367 4.32e-01 100 chrXVI:784125-788316 9.86e-01 100 chrXII:932053-932551 9.32e-01 100 chrIX:1-266 8.40e-01 100 chrXV:619631-624698 9.10e-01 100 chrXIII:23752-26061 6.70e-01 100 chrVII:845344-845918 1.69e-03 74_[-2(5.18e-07)]_5 chrXI:458338-459014 2.91e-01 100 chrX:374185-374285 3.46e-06 37_[-1(1.25e-09)]_42 chrII:504509-504720 2.79e-01 100 chrXVI:338679-339209 4.38e-01 100 chrVI:161988-162451 1.38e-03 65_[-2(5.18e-07)]_14 chrXI:202818-203271 2.55e-11 11_[-2(1.75e-07)]_16_[+1(1.78e-10)]_\ 31 chrXII:731880-732264 2.67e-06 74_[-2(4.18e-10)]_5 chrII:254844-257144 2.66e-01 100 chrX:704127-704227 4.45e-01 100 chrV:288154-288771 2.36e-02 38_[-1(8.55e-05)]_41 chrIV:1075281-1075782 2.28e-07 28_[+3(2.00e-10)]_42 chrVII:147996-149570 2.19e-01 100 chrXIII:225319-226694 7.03e-02 100 chrXIII:861167-861450 8.58e-03 5_[-3(3.67e-05)]_65 chrXII:938999-941372 1.82e-01 100 chrXII:374168-374674 9.27e-04 27_[+1(2.29e-07)]_52 chrVII:939035-939716 7.83e-01 100 chrI:141646-141894 2.67e-01 100 chrXI:490311-491301 7.83e-01 100 chrXII:897594-899627 8.80e-01 100 chrXVI:340541-340743 5.88e-02 100 chrV:362127-363266 2.81e-01 100 chrXII:282471-283856 8.14e-01 100 chrIV:1245705-1246091 9.88e-01 100 chrXII:10993-12024 6.01e-10 40_[+3(5.98e-11)]_2_[+2(1.40e-06)]_\ 7 chrVII:205037-205821 5.65e-01 100 chrXVI:559988-560535 1.18e-05 50_[+2(1.08e-08)]_29 chrVI:167252-167722 4.60e-07 6_[-2(1.60e-06)]_32_[+1(5.46e-08)]_\ 20 chrXIV:576625-577347 5.63e-01 100 chrVII:787964-788794 3.97e-02 100 chrXII:241526-243681 7.77e-01 100 chrII:36167-36630 1.76e-05 56_[-2(1.08e-08)]_23 chrXII:837670-839406 1.11e-01 100 chrXV:978788-979149 1.65e-01 100 chrI:71715-73615 4.64e-01 100 chrVII:73691-74489 9.52e-01 100 chrXI:24908-26386 9.41e-01 100 chrXVI:75484-76757 8.19e-01 100 chrVII:823253-823713 7.47e-05 55_[-2(1.77e-08)]_24 chrXV:167918-168522 4.61e-01 100 chrVII:736159-736621 3.46e-06 42_[+1(1.25e-09)]_37 chrIII:162075-164071 1.29e-02 61_[-2(2.49e-05)]_18 chrXII:448486-448987 1.49e-11 [+3(6.81e-14)]_70 chrXVI:819164-819979 6.27e-15 14_[-2(1.26e-11)]_17_[+1(3.20e-11)]_\ 27 chrVIII:466736-467276 1.35e-04 76_[+1(1.76e-07)]_3 chrVI:101033-101656 7.36e-01 100 chrXI:617716-619332 9.58e-01 100 chrXVI:653821-655050 7.57e-01 100 chrXII:962777-963404 3.55e-01 100 chrXII:231985-234270 8.74e-01 100 chrIII:11086-11555 4.05e-01 100 chrVIII:125875-127762 8.77e-01 100 chrXVI:911268-911836 5.14e-01 100 chrII:326561-327180 1.25e-04 17_[+2(4.79e-07)]_62 chrXV:109564-111327 1.01e-01 100 chrXII:1051843-1052401 6.27e-15 6_[-1(3.20e-11)]_17_[+2(1.26e-11)]_\ 35 chrIX:325480-326124 8.27e-12 2_[-2(7.71e-11)]_16_[+1(8.37e-09)]_\ 40 chrVI:157632-158301 3.52e-10 7_[-1(3.34e-08)]_35_[+2(1.08e-08)]_\ 16 chrIV:449415-450096 5.43e-01 100 chrV:141097-141333 3.76e-01 100 chrIV:884931-885292 3.39e-01 100 chrIII:78419-78737 9.05e-01 100 chrIV:155778-156332 3.57e-01 100 chrII:87960-88592 1.45e-01 100 chrXV:464221-464754 1.44e-03 19_[-2(1.70e-06)]_60 chrVII:779182-779907 7.19e-01 100 chrXIII:504631-505301 2.80e-01 100 chrII:642862-643364 9.32e-01 100 chrIII:293656-295889 9.97e-01 100 chrV:469248-469710 2.08e-10 34_[-2(1.77e-08)]_17_[+1(3.22e-09)]_\ 7 chrVII:544359-546090 9.58e-01 100 chrXVI:55622-56532 4.42e-01 100 chrXIII:652012-652920 8.01e-01 100 chrXV:925197-925418 1.18e-01 100 chrX:542760-542860 7.04e-01 100 chrIV:525077-525298 5.42e-01 100 chrX:517624-517724 6.52e-01 100 chrXII:567517-570838 7.18e-01 100 chrXII:198674-199755 4.69e-01 100 chrXVI:794420-796083 6.45e-01 100 chrXIII:511449-511705 7.85e-01 100 chrII:88931-90003 3.30e-01 100 chrIII:29556-31210 4.15e-01 100 chrVII:648763-649410 3.03e-01 100 chrXI:513172-513732 2.02e-01 100 chrXI:325966-327568 3.46e-01 100 chrV:434367-434794 2.46e-11 18_[-1(3.76e-07)]_8_[+3(1.77e-10)]_\ 23 chrIII:227706-228214 2.56e-06 38_[-2(2.31e-09)]_41 chrII:181297-181677 5.81e-01 100 chrX:523827-523927 5.39e-01 100 chrIV:1449926-1451397 8.94e-01 100 chrVII:555113-557517 7.63e-01 100 chrX:651156-651256 8.70e-01 100 chrXI:108552-110157 4.41e-02 100 chrII:350548-351128 9.56e-12 43_[-3(6.81e-14)]_27 chrXIII:872668-872936 3.17e-01 100 chrIV:449012-449231 8.18e-03 78_[+2(1.48e-05)]_1 chrI:180917-181470 6.97e-05 4_[-2(5.54e-09)]_75 chrXII:1012112-1012314 2.12e-02 41_[+1(4.21e-05)]_38 chrVIII:455613-455846 2.99e-01 100 chrV:438440-439023 2.08e-10 25_[-2(1.77e-08)]_17_[+1(3.22e-09)]_\ 16 chrVII:730915-731408 2.20e-10 32_[-2(7.28e-10)]_17_[+1(5.90e-08)]_\ 9 chrX:204435-204535 3.75e-10 61_[-3(1.48e-12)]_9 chrXVI:432565-434410 2.27e-01 100 chrIV:541195-541921 9.25e-01 100 chrVIII:175050-175391 4.55e-01 100 chrXIII:253369-253567 4.53e-02 100 chrVI:263443-265901 9.57e-02 100 chrVII:400722-401782 2.73e-01 100 chrXII:1028160-1028600 8.79e-01 100 chrIV:118414-118870 9.31e-01 100 chrIV:929254-930310 7.88e-01 100 chrVIII:388653-389226 3.46e-09 11_[-1(9.72e-10)]_46_[+2(1.70e-06)]_\ 1 chrX:617757-617857 2.29e-01 100 chrXV:161080-161415 7.23e-01 100 chrX:391825-391925 4.07e-01 100 chrXV:216228-216721 6.04e-01 100 chrIII:123368-123834 6.34e-10 33_[-1(2.66e-12)]_15_[+2(8.52e-05)]_\ 10 chrXIV:88903-90099 5.80e-01 100 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chrVII:1083447-1083896 9.17e-01 100 chrXII:903389-903718 4.25e-01 100 chrXVI:207964-208554 4.43e-01 100 chrXII:1017720-1019447 1.91e-01 100 chrIX:255095-258132 8.32e-01 100 chrVI:4449-5854 4.34e-01 100 chrXII:522152-523575 9.25e-01 100 chrXI:46541-47042 2.63e-06 1_[-1(4.02e-09)]_78 chrV:311761-312319 7.36e-14 40_[-1(9.34e-11)]_16_[+2(7.28e-10)]_\ 2 chrXIII:747746-748344 3.04e-01 100 chrX:453373-453473 4.21e-01 100 chrXIV:585410-586586 7.64e-01 100 chrV:269191-270726 9.99e-01 100 chrV:176431-176639 8.91e-01 100 chrI:138882-139384 3.17e-03 75_[-2(1.70e-06)]_4 chrVII:882392-884023 1.98e-01 100 chrIX:210493-210988 1.79e-07 19_[+1(3.20e-11)]_60 chrXIV:61976-63604 5.02e-01 100 chrXVI:775620-776197 6.72e-01 100 chrV:53490-54143 6.63e-01 100 chrVII:1000321-1000613 3.60e-01 100 chrVII:121980-122554 1.15e-04 58_[-2(1.75e-07)]_21 chrIV:1401187-1402214 7.81e-01 100 chrV:303978-307413 9.29e-01 100 chrVI:269360-270159 1.20e-01 100 chrXIV:61569-61780 8.10e-01 100 chrXII:366010-366579 1.41e-01 100 chrIV:1233680-1234143 5.78e-01 100 chrXII:489284-489567 5.71e-03 22_[-2(1.50e-06)]_57 chrIX:248608-249341 4.97e-01 100 chrVII:878544-879091 2.11e-01 100 chrXII:149951-150845 3.83e-01 100 chrVIII:132810-133382 8.51e-06 33_[+2(7.28e-10)]_46 chrX:90020-90120 6.89e-01 100 chrXIV:229482-230763 3.29e-01 100 chrXV:970158-970408 9.99e-01 100 chrXVI:645426-646619 9.17e-01 100 chrVIII:62481-62997 1.78e-07 70_[-3(1.77e-10)] chrVII:561167-561963 3.17e-01 100 chrV:6124-6670 9.82e-01 100 chrIV:946119-946638 6.38e-04 43_[+1(5.46e-08)]_36 chrVI:137221-137908 1.27e-05 17_[+2(7.28e-10)]_62 chrVII:541605-542195 1.11e-16 4_[-3(1.51e-13)]_8_[+1(1.78e-10)]_\ 37 chrIV:1201454-1202906 7.20e-01 100 chrXIV:104572-105149 8.27e-12 1_[-2(7.71e-11)]_16_[+1(8.37e-09)]_\ 41 chrII:592348-593353 6.42e-01 100 chrVI:204742-205229 1.86e-07 33_[+2(5.54e-09)]_46 chrXVI:377898-379035 6.66e-01 100 chrXIII:290485-291137 1.03e-09 44_[-3(1.51e-13)]_26 chrV:487125-487644 1.11e-16 4_[-1(1.78e-10)]_8_[+3(1.51e-13)]_\ 37 chrXV:438415-439196 9.72e-01 100 chrVIII:145968-146465 7.25e-01 100 chrXIII:258994-259502 3.11e-06 13_[+2(7.28e-10)]_66 chrXII:348171-348719 7.03e-01 100 chrXIII:807876-808570 3.28e-01 100 chrV:138392-140918 7.44e-01 100 chrV:13189-13662 5.88e-01 100 chrXIV:392396-392686 6.80e-01 100 chrV:423056-425285 1.92e-01 100 chrX:160006-160106 9.88e-01 100 chrXIV:632380-632890 4.53e-11 20_[-2(7.28e-10)]_17_[+1(5.90e-08)]_\ 21 chrVII:930723-931242 2.01e-10 28_[-1(5.53e-11)]_14_[+2(5.18e-07)]_\ 16 chrII:301040-301601 2.95e-01 100 chrI:182352-182799 2.16e-07 4_[-1(5.31e-05)]_25_[+2(7.28e-10)]_\ 29 chrXV:853955-854459 7.36e-14 37_[-1(9.34e-11)]_16_[+2(7.28e-10)]_\ 5 chrXV:281660-282541 8.94e-01 100 chrV:435035-436061 7.91e-01 100 chrVIII:562243-562576 6.08e-01 100 chrIV:1305364-1306131 9.94e-01 100 chrIV:229391-230742 8.26e-01 100 chrXII:468734-468996 1.24e-03 46_[-2(1.50e-06)]_33 chrIX:254194-254573 3.61e-01 100 chrIV:1236401-1238638 9.41e-01 100 chrXII:424181-424452 5.63e-01 100 chrIX:336109-336670 8.26e-16 17_[-1(6.16e-09)]_8_[+3(1.48e-12)]_\ 24 chrX:355126-355226 1.11e-07 33_[+1(1.25e-09)]_25_[-2(2.76e-05)] chrXV:1070863-1071162 9.33e-01 100 chrXII:817731-820431 9.96e-01 100 chrXIV:442773-444838 7.84e-01 100 chrVII:364016-364440 7.49e-01 100 chrXVI:768609-769508 2.70e-01 100 chrXVI:622307-622870 3.52e-10 9_[-1(3.34e-08)]_35_[+2(1.08e-08)]_\ 14 chrII:644959-645441 1.11e-16 21_[-3(1.51e-13)]_8_[+1(1.78e-10)]_\ 20 chrIV:578989-580995 3.02e-02 37_[+2(1.06e-05)]_42 chrX:378008-378108 8.78e-01 100 chrVI:191279-191835 5.80e-08 13_[-1(5.14e-05)]_44_[+2(2.84e-10)]_\ 1 chrVII:110393-110949 2.46e-11 11_[-1(3.76e-07)]_8_[+3(1.77e-10)]_\ 30 chrIV:667725-668262 1.80e-07 71_[-1(3.20e-11)]_8 chrV:460590-462184 6.30e-01 100 chrXV:663510-664328 2.88e-01 100 chrXIII:760961-763157 9.61e-01 100 chrIV:132736-133724 5.44e-01 100 chrX:414769-414869 8.51e-07 30_[+1(1.78e-10)]_49 chrXIII:222581-224418 3.21e-01 100 chrXII:592336-593153 5.54e-01 100 chrXIV:330388-331175 8.08e-01 100 chrXIII:362820-363396 2.46e-11 10_[-3(1.77e-10)]_8_[+1(3.76e-07)]_\ 31 chrV:99847-100368 8.63e-01 100 chrIV:233995-234507 6.27e-01 100 chrXIV:6484-7203 1.76e-08 43_[+3(4.37e-11)]_27 chrVIII:505800-506235 8.06e-01 100 chrXI:99737-99986 8.03e-01 100 chrVII:773810-774648 5.96e-01 100 chrVIII:296802-297272 2.58e-01 100 chrV:442964-443513 6.27e-15 21_[-1(3.20e-11)]_17_[+2(1.26e-11)]_\ 20 chrXII:805371-807160 3.40e-01 100 chrXI:38680-39179 4.27e-01 100 chrX:415792-415892 8.53e-02 100 chrXI:140673-142165 4.33e-01 100 chrVII:371209-371500 1.24e-01 100 chrVI:95438-95888 2.30e-01 100 chrXI:518937-519182 7.51e-01 100 chrXV:558646-559013 9.04e-02 100 chrV:551043-551625 6.27e-15 8_[-1(3.20e-11)]_17_[+2(1.26e-11)]_\ 33 chrII:680416-682227 6.92e-01 100 chrXVI:135346-135859 8.07e-01 100 chrXI:439901-440928 3.06e-01 100 chrV:122763-123081 2.19e-01 100 chrIV:802528-803038 1.66e-17 5_[-1(2.57e-09)]_8_[+3(6.81e-14)]_\ 36 chrIV:437497-438252 8.77e-02 [+1(5.31e-05)]_79 chrM:58224-58975 1.16e-01 100 chrVII:364890-366754 6.52e-01 100 chrII:347376-347924 2.70e-08 9_[-2(8.30e-09)]_30_[-1(4.48e-07)]_\ 19 chrXII:875192-875688 1.89e-05 52_[+1(3.60e-09)]_27 chrX:663667-663767 2.45e-01 100 chrXV:709972-710465 1.07e-01 75_[+1(8.82e-05)]_4 chrIV:83306-83825 2.01e-10 39_[-2(5.18e-07)]_14_[+1(5.53e-11)]_\ 5 chrVII:533828-535241 2.61e-01 100 chrVII:412127-412606 7.47e-05 23_[+2(1.77e-08)]_56 chrIV:1259573-1259935 9.11e-01 100 chrIV:568627-569289 1.81e-16 16_[+1(1.25e-09)]_23_[-3(1.48e-12)]_\ 10 chrXII:712276-713625 9.98e-01 100 chrII:234619-236017 7.76e-01 100 chrII:60180-61303 5.16e-01 100 chrIV:216531-218045 7.85e-02 100 chrIX:438693-439886 1.72e-03 59_[+2(1.00e-06)]_20 chrIX:68147-69799 1.92e-01 100 chrV:406482-409342 7.03e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************