******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--IES2/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:6-229 1.0000 100 chrI:71578-73654 1.0000 100 chrI:81918-82284 1.0000 100 chrI:138790-139347 1.0000 100 chrI:142106-143670 1.0000 100 chrI:151597-152005 1.0000 100 chrI:166016-166823 1.0000 100 chrI:180916-181518 1.0000 100 chrI:182326-182784 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chrXV:287775-288423 1.0000 100 chrXV:300766-301576 1.0000 100 chrXV:339927-340611 1.0000 100 chrXV:353775-354319 1.0000 100 chrXV:438442-439021 1.0000 100 chrXV:444653-446211 1.0000 100 chrXV:464089-464756 1.0000 100 chrXV:487184-487742 1.0000 100 chrXV:505032-505491 1.0000 100 chrXV:505750-506784 1.0000 100 chrXV:571390-572267 1.0000 100 chrXV:594240-594831 1.0000 100 chrXV:619595-624750 1.0000 100 chrXV:663438-664406 1.0000 100 chrXV:677878-679211 1.0000 100 chrXV:709984-710522 1.0000 100 chrXV:779698-780968 1.0000 100 chrXV:832361-832845 1.0000 100 chrXV:842387-843114 1.0000 100 chrXV:853972-854440 1.0000 100 chrXV:866539-868390 1.0000 100 chrXV:900023-901259 1.0000 100 chrXV:901475-901807 1.0000 100 chrXV:925217-925433 1.0000 100 chrXV:968176-968403 1.0000 100 chrXV:976169-977285 1.0000 100 chrXV:978820-979144 1.0000 100 chrXV:980477-981412 1.0000 100 chrXV:1003879-1005003 1.0000 100 chrXV:1024907-1026106 1.0000 100 chrXV:1027513-1029661 1.0000 100 chrXVI:55567-56543 1.0000 100 chrXVI:75444-76749 1.0000 100 chrXVI:109727-110363 1.0000 100 chrXVI:135541-135851 1.0000 100 chrXVI:172826-174111 1.0000 100 chrXVI:188549-189186 1.0000 100 chrXVI:209561-211058 1.0000 100 chrXVI:252329-252813 1.0000 100 chrXVI:280611-282964 1.0000 100 chrXVI:302549-304377 1.0000 100 chrXVI:338635-339267 1.0000 100 chrXVI:376908-377393 1.0000 100 chrXVI:378653-379012 1.0000 100 chrXVI:406200-407854 1.0000 100 chrXVI:435125-436242 1.0000 100 chrXVI:514593-517067 1.0000 100 chrXVI:520157-520725 1.0000 100 chrXVI:559985-560535 1.0000 100 chrXVI:571742-572869 1.0000 100 chrXVI:575193-575635 1.0000 100 chrXVI:581824-582740 1.0000 100 chrXVI:622203-622868 1.0000 100 chrXVI:642756-643351 1.0000 100 chrXVI:655196-655458 1.0000 100 chrXVI:689333-690585 1.0000 100 chrXVI:699856-700667 1.0000 100 chrXVI:701859-702351 1.0000 100 chrXVI:718345-719444 1.0000 100 chrXVI:731627-732303 1.0000 100 chrXVI:743934-744650 1.0000 100 chrXVI:745429-746253 1.0000 100 chrXVI:768929-769483 1.0000 100 chrXVI:775598-776240 1.0000 100 chrXVI:794411-796146 1.0000 100 chrXVI:810438-811108 1.0000 100 chrXVI:819136-819974 1.0000 100 chrXVI:821555-822147 1.0000 100 chrXVI:850326-850665 1.0000 100 chrXVI:856535-857163 1.0000 100 chrXVI:860049-860695 1.0000 100 chrXVI:868596-868911 1.0000 100 chrXVI:880104-880823 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--IES2/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--IES2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--IES2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 591 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 59100 N= 591 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.309 C 0.191 G 0.191 T 0.309 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--IES2/background): A 0.317 C 0.183 G 0.183 T 0.317 ******************************************************************************** ******************************************************************************** MOTIF TCNKRAGRTCVBSGGTTCGAHYCCS MEME-1 width = 25 sites = 70 llr = 1365 E-value = 3.1e-278 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCNKRAGRTCVBSGGTTCGAHYCCS MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::2247141:4::2::::2a2:::: pos.-specific C 2721::1:184341:::a::25a75 probability G 23345376::2357a:::8:1::15 matrix T 6:331:1:82:4:::aa:::45:2: bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 * * ** * * Relative 1.5 * * ****** * Entropy 1.2 * * * * ****** * * (28.1 bits) 1.0 * ** * ******** **** 0.7 * ****** ******** **** 0.5 ** **************** **** 0.2 ** ***************** **** 0.0 ------------------------- Multilevel TCGGGAGGTCATGGGTTCGATCCCC consensus CGTTAG A CCCA A AT TG sequence G A GG C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCNKRAGRTCVBSGGTTCGAHYCCS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------- chrIII:123310-123835 - 65 3.98e-14 CGCTTAGGGT GCGGGAGGTCCCGGGTTCGAGTCCC GGCTCGCCCC chrXVI:819136-819974 + 63 4.74e-12 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrXIV:602116-602593 + 47 4.74e-12 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrXIV:569579-570140 - 68 4.74e-12 GCTAATAA CGCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrV:442952-443518 - 27 4.74e-12 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrIX:210514-210957 + 19 4.74e-12 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrIV:667741-668253 - 70 4.74e-12 TAATAA CGCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrXV:853972-854440 - 41 3.73e-11 TCCCTTGCAA GGAAGAGGTCATCGGTTCGATTCCG GTTGCGTCCA chrXII:214621-215180 - 43 3.73e-11 TCCCTTGCAA GGAAGAGGTCATCGGTTCGATTCCG GTTGCGTCCA chrV:311771-312313 - 41 3.73e-11 TCCCTTGCAA GGAAGAGGTCATCGGTTCGATTCCG GTTGCGTCCA chrXVI:571742-572869 + 50 7.18e-11 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrXV:300766-301576 + 43 7.18e-11 GACAAAGCAT GCGAGAGGCCCTGGGTTCAATTCCC AGCTCGCCCC chrXI:202831-203324 + 10 7.18e-11 GACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrX:531531-532212 + 43 7.18e-11 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrX:374170-374865 - 49 7.18e-11 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrX:355114-355748 + 30 7.18e-11 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrVIII:388609-389254 - 22 7.18e-11 GACAAAGCAT GCGAGAGGCCCTGGGTTCAATTCCC AGCTCGCCCC chrVII:876138-876736 + 45 7.18e-11 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrVII:185373-186089 - 43 7.18e-11 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrVI:226500-226945 - 26 7.18e-11 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrVI:180666-181258 - 72 7.18e-11 GCCA TCGTTGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrV:135112-135718 - 70 7.18e-11 TCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrIV:992608-993162 + 33 7.18e-11 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrIV:83106-84017 + 73 7.18e-11 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTCCG GGC chrII:405549-406300 + 41 7.18e-11 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrXVI:768929-769483 - 61 1.18e-10 AGCAAGGATA CCGAAATGTCAGGGGTTCGAGCCCC CTATGAGGAG chrXV:438442-439021 + 23 1.18e-10 AGCAAGGATA CCGAAATGTCAGGGGTTCGAGCCCC CTATGAGGAG chrXII:875214-875689 + 36 1.18e-10 AGCAAGGATA CCGAAATGTCAGGGGTTCGAGCCCC CTATGAGGAG chrXII:656716-657200 - 36 1.33e-10 CCCTTAGCAT GGGAGAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrIV:410126-410737 + 36 1.33e-10 CCCTTAGCAT GGGAGAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrXV:353775-354319 - 54 1.50e-10 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrXIV:560225-561257 - 12 1.50e-10 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrX:58790-59477 - 27 1.50e-10 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrIX:325475-326128 + 35 1.50e-10 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrIX:174756-175354 + 64 1.50e-10 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrII:266152-266729 + 26 1.50e-10 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrIV:802411-803031 - 70 1.89e-10 TTTTGA TCCGGACAACCCCGGTTCGAATCCG GGTAGGACCT chrIV:644948-645393 - 43 1.89e-10 TCGGTTTTGA TCCGGACAACCCCGGTTCGAATCCG GGTAGGACCT chrXIII:420276-420978 - 21 3.34e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTG GGCGAAATCA chrXIII:372178-372758 - 37 3.34e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTG GGCGAAATCA chrXI:379481-379922 + 68 3.34e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTG GGCGAAAT chrVII:412094-412601 - 7 3.34e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTG GGCGAA chrXVI:622203-622868 - 65 4.62e-10 GGTCAAGTTA TCTGGAGGTCCTGTGTTCGATCCAC AGAATTCGCA chrXIV:374649-375231 + 35 4.62e-10 GGTCAAGTCA TCTGGAGGTCCTGTGTTCGATCCAC AGAGTTCGCA chrV:130828-131445 - 6 4.62e-10 TCGGTTTTGA TCCGAACAACCCCGGTTCGAATCCG GGTAA chrIV:1095081-1095724 - 28 4.62e-10 GGTCAAGATA TCTGGAGGTCCTGTGTTCGATCCAC AGAGTTCGCA chrIV:488421-489219 - 37 4.62e-10 GCCTTTACAC GGCGAAGATCCCGAGTTCGAACCTC GGTTGGATCA chrVII:541593-542184 + 49 5.14e-10 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCCC CGTATCGGAG chrV:176743-177493 + 68 5.14e-10 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCCC CGTATCGG chrIX:197284-198011 + 32 5.14e-10 CACGTTCTCA CCGTGGAGACCGGGGTTCGACTCCC CGCTTCGGAG chrX:353964-354621 + 56 1.16e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTCGC CCCCGGGAGA chrVI:210411-210929 - 9 1.16e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTCGC CCCCGGGA chrVI:167242-167724 + 58 1.16e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTCGC CCCCGGGAGA chrIV:946145-946608 + 40 1.16e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTCGC CCCCGGGAGA chrX:390779-391316 - 56 1.28e-09 AGTCTCATAA TCTGAAGGTCGAGAGTTCGAACCTC CCCTGGAGCA chrIV:1175559-1176236 + 20 1.28e-09 AGTCTCATAA TCTGAAGGTCGAGAGTTCGAACCTC CCCTGGAGCA chrXV:487184-487742 + 65 1.87e-09 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXIV:632387-632923 + 33 1.87e-09 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXIV:102493-103043 + 37 1.87e-09 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXII:975776-976291 - 10 1.87e-09 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCCTC ACTGGGGTC chrVII:730900-731438 + 57 1.87e-09 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXV:709984-710522 + 35 3.08e-08 GGGCTCATAA CCCTGATGTCCTCGGATCGAAACCG AGCGGCGCTA chrX:517602-518132 - 6 3.08e-08 GGGCTCATAA CCCTGATGTCCTCGGATCGAAACCG AGCGG chrXIII:378573-380026 - 64 4.30e-08 AAGATTGCAA TCGAAGGGTTGCAGGTTCAATTCCT GTCCGTTTCA chrXI:302650-303303 + 63 4.30e-08 AAGATTGCAA TCGAAGGGTTGCAGGTTCAATTCCT GTCCGTTTCA chrVII:286996-287799 - 13 4.30e-08 AAGATTGCAA TCGAAGGGTTGCAGGTTCAATTCCT GTCCGTTTCA chrVII:706933-707356 - 24 5.21e-08 AGATTGCAAA TCTGTTGGTCCTTAGTTCGATCCTG AGTGCGAGCT chrVII:700192-701311 + 21 1.43e-07 GTCCTGATCT CTTCGGAGGCGCGGGTTCAAACCCC GCGGGTATCA chrII:347365-347960 + 40 3.11e-07 TCTGTTGGAC GGTTGTCCGCGCGAGTTCGAACCTC GCATCCTTCA chrII:9341-9918 + 53 3.11e-07 TCTGTTGGAC GGTTGTCCGCGCGAGTTCGAACCTC GCATCCTTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCNKRAGRTCVBSGGTTCGAHYCCS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123310-123835 4e-14 64_[-1]_11 chrXVI:819136-819974 4.7e-12 62_[+1]_13 chrXIV:602116-602593 4.7e-12 46_[+1]_29 chrXIV:569579-570140 4.7e-12 67_[-1]_8 chrV:442952-443518 4.7e-12 26_[-1]_49 chrIX:210514-210957 4.7e-12 18_[+1]_57 chrIV:667741-668253 4.7e-12 69_[-1]_6 chrXV:853972-854440 3.7e-11 40_[-1]_35 chrXII:214621-215180 3.7e-11 42_[-1]_33 chrV:311771-312313 3.7e-11 40_[-1]_35 chrXVI:571742-572869 7.2e-11 49_[+1]_26 chrXV:300766-301576 7.2e-11 42_[+1]_33 chrXI:202831-203324 7.2e-11 9_[+1]_66 chrX:531531-532212 7.2e-11 42_[+1]_33 chrX:374170-374865 7.2e-11 48_[-1]_27 chrX:355114-355748 7.2e-11 29_[+1]_46 chrVIII:388609-389254 7.2e-11 21_[-1]_54 chrVII:876138-876736 7.2e-11 44_[+1]_31 chrVII:185373-186089 7.2e-11 42_[-1]_33 chrVI:226500-226945 7.2e-11 25_[-1]_50 chrVI:180666-181258 7.2e-11 71_[-1]_4 chrV:135112-135718 7.2e-11 69_[-1]_6 chrIV:992608-993162 7.2e-11 32_[+1]_43 chrIV:83106-84017 7.2e-11 72_[+1]_3 chrII:405549-406300 7.2e-11 40_[+1]_35 chrXVI:768929-769483 1.2e-10 60_[-1]_15 chrXV:438442-439021 1.2e-10 22_[+1]_53 chrXII:875214-875689 1.2e-10 35_[+1]_40 chrXII:656716-657200 1.3e-10 35_[-1]_40 chrIV:410126-410737 1.3e-10 35_[+1]_40 chrXV:353775-354319 1.5e-10 53_[-1]_22 chrXIV:560225-561257 1.5e-10 11_[-1]_64 chrX:58790-59477 1.5e-10 26_[-1]_49 chrIX:325475-326128 1.5e-10 34_[+1]_41 chrIX:174756-175354 1.5e-10 63_[+1]_12 chrII:266152-266729 1.5e-10 25_[+1]_50 chrIV:802411-803031 1.9e-10 69_[-1]_6 chrIV:644948-645393 1.9e-10 42_[-1]_33 chrXIII:420276-420978 3.3e-10 20_[-1]_55 chrXIII:372178-372758 3.3e-10 36_[-1]_39 chrXI:379481-379922 3.3e-10 67_[+1]_8 chrVII:412094-412601 3.3e-10 6_[-1]_69 chrXVI:622203-622868 4.6e-10 64_[-1]_11 chrXIV:374649-375231 4.6e-10 34_[+1]_41 chrV:130828-131445 4.6e-10 5_[-1]_70 chrIV:1095081-1095724 4.6e-10 27_[-1]_48 chrIV:488421-489219 4.6e-10 36_[-1]_39 chrVII:541593-542184 5.1e-10 48_[+1]_27 chrV:176743-177493 5.1e-10 67_[+1]_8 chrIX:197284-198011 5.1e-10 31_[+1]_44 chrX:353964-354621 1.2e-09 55_[+1]_20 chrVI:210411-210929 1.2e-09 8_[-1]_67 chrVI:167242-167724 1.2e-09 57_[+1]_18 chrIV:946145-946608 1.2e-09 39_[+1]_36 chrX:390779-391316 1.3e-09 55_[-1]_20 chrIV:1175559-1176236 1.3e-09 19_[+1]_56 chrXV:487184-487742 1.9e-09 64_[+1]_11 chrXIV:632387-632923 1.9e-09 32_[+1]_43 chrXIV:102493-103043 1.9e-09 36_[+1]_39 chrXII:975776-976291 1.9e-09 9_[-1]_66 chrVII:730900-731438 1.9e-09 56_[+1]_19 chrXV:709984-710522 3.1e-08 34_[+1]_41 chrX:517602-518132 3.1e-08 5_[-1]_70 chrXIII:378573-380026 4.3e-08 63_[-1]_12 chrXI:302650-303303 4.3e-08 62_[+1]_13 chrVII:286996-287799 4.3e-08 12_[-1]_63 chrVII:706933-707356 5.2e-08 23_[-1]_52 chrVII:700192-701311 1.4e-07 20_[+1]_55 chrII:347365-347960 3.1e-07 39_[+1]_36 chrII:9341-9918 3.1e-07 52_[+1]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCNKRAGRTCVBSGGTTCGAHYCCS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCNKRAGRTCVBSGGTTCGAHYCCS width=25 seqs=70 chrIII:123310-123835 ( 65) GCGGGAGGTCCCGGGTTCGAGTCCC 1 chrXVI:819136-819974 ( 63) CGCGGGGATCAGCGGTTCGATCCCG 1 chrXIV:602116-602593 ( 47) CGCGGGGATCAGCGGTTCGATCCCG 1 chrXIV:569579-570140 ( 68) CGCGGGGATCAGCGGTTCGATCCCG 1 chrV:442952-443518 ( 27) CGCGGGGATCAGCGGTTCGATCCCG 1 chrIX:210514-210957 ( 19) CGCGGGGATCAGCGGTTCGATCCCG 1 chrIV:667741-668253 ( 70) CGCGGGGATCAGCGGTTCGATCCCG 1 chrXV:853972-854440 ( 41) GGAAGAGGTCATCGGTTCGATTCCG 1 chrXII:214621-215180 ( 43) GGAAGAGGTCATCGGTTCGATTCCG 1 chrV:311771-312313 ( 41) GGAAGAGGTCATCGGTTCGATTCCG 1 chrXVI:571742-572869 ( 50) TCGTTGGGCCCCCGGTTCGATTCCG 1 chrXV:300766-301576 ( 43) GCGAGAGGCCCTGGGTTCAATTCCC 1 chrXI:202831-203324 ( 10) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrX:531531-532212 ( 43) TCGTTGGGCCCCCGGTTCGATTCCG 1 chrX:374170-374865 ( 49) TCAGAAGATTATGGGTTCGACCCCC 1 chrX:355114-355748 ( 30) TCAGAAGATTATGGGTTCGACCCCC 1 chrVIII:388609-389254 ( 22) GCGAGAGGCCCTGGGTTCAATTCCC 1 chrVII:876138-876736 ( 45) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrVII:185373-186089 ( 43) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrVI:226500-226945 ( 26) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrVI:180666-181258 ( 72) TCGTTGGGCCCCCGGTTCGATTCCG 1 chrV:135112-135718 ( 70) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrIV:992608-993162 ( 33) TCGTTGGGCCCCCGGTTCGATTCCG 1 chrIV:83106-84017 ( 73) TCGTTGGGCCCCCGGTTCGATTCCG 1 chrII:405549-406300 ( 41) TCAGAAGATTATGGGTTCGACCCCC 1 chrXVI:768929-769483 ( 61) CCGAAATGTCAGGGGTTCGAGCCCC 1 chrXV:438442-439021 ( 23) CCGAAATGTCAGGGGTTCGAGCCCC 1 chrXII:875214-875689 ( 36) CCGAAATGTCAGGGGTTCGAGCCCC 1 chrXII:656716-657200 ( 36) GGGAGAGGTCTCCGGTTCGATTCCG 1 chrIV:410126-410737 ( 36) GGGAGAGGTCTCCGGTTCGATTCCG 1 chrXV:353775-354319 ( 54) TGTGGAGATCATCGGTTCAAATCCG 1 chrXIV:560225-561257 ( 12) TGTGGAGATCATCGGTTCAAATCCG 1 chrX:58790-59477 ( 27) TGTGGAGATCATCGGTTCAAATCCG 1 chrIX:325475-326128 ( 35) TGTGGAGATCATCGGTTCAAATCCG 1 chrIX:174756-175354 ( 64) TGTGGAGATCATCGGTTCAAATCCG 1 chrII:266152-266729 ( 26) TGTGGAGATCATCGGTTCAAATCCG 1 chrIV:802411-803031 ( 70) TCCGGACAACCCCGGTTCGAATCCG 1 chrIV:644948-645393 ( 43) TCCGGACAACCCCGGTTCGAATCCG 1 chrXIII:420276-420978 ( 21) GCAGAACGTCCCCAGTTCGATCCTG 1 chrXIII:372178-372758 ( 37) GCAGAACGTCCCCAGTTCGATCCTG 1 chrXI:379481-379922 ( 68) GCAGAACGTCCCCAGTTCGATCCTG 1 chrVII:412094-412601 ( 7) GCAGAACGTCCCCAGTTCGATCCTG 1 chrXVI:622203-622868 ( 65) TCTGGAGGTCCTGTGTTCGATCCAC 1 chrXIV:374649-375231 ( 35) TCTGGAGGTCCTGTGTTCGATCCAC 1 chrV:130828-131445 ( 6) TCCGAACAACCCCGGTTCGAATCCG 1 chrIV:1095081-1095724 ( 28) TCTGGAGGTCCTGTGTTCGATCCAC 1 chrIV:488421-489219 ( 37) GGCGAAGATCCCGAGTTCGAACCTC 1 chrVII:541593-542184 ( 49) CCGTGGAGACCGGGGTTCGACTCCC 1 chrV:176743-177493 ( 68) CCGTGGAGACCGGGGTTCGACTCCC 1 chrIX:197284-198011 ( 32) CCGTGGAGACCGGGGTTCGACTCCC 1 chrX:353964-354621 ( 56) TCTTGAGATCGGGCGTTCGACTCGC 1 chrVI:210411-210929 ( 9) TCTTGAGATCGGGCGTTCGACTCGC 1 chrVI:167242-167724 ( 58) TCTTGAGATCGGGCGTTCGACTCGC 1 chrIV:946145-946608 ( 40) TCTTGAGATCGGGCGTTCGACTCGC 1 chrX:390779-391316 ( 56) TCTGAAGGTCGAGAGTTCGAACCTC 1 chrIV:1175559-1176236 ( 20) TCTGAAGGTCGAGAGTTCGAACCTC 1 chrXV:487184-487742 ( 65) TCGCAAGATCGTGAGTTCAACCCTC 1 chrXIV:632387-632923 ( 33) TCGCAAGATCGTGAGTTCAACCCTC 1 chrXIV:102493-103043 ( 37) TCGCAAGATCGTGAGTTCAACCCTC 1 chrXII:975776-976291 ( 10) TCGCAAGATCGTGAGTTCAACCCTC 1 chrVII:730900-731438 ( 57) TCGCAAGATCGTGAGTTCAACCCTC 1 chrXV:709984-710522 ( 35) CCCTGATGTCCTCGGATCGAAACCG 1 chrX:517602-518132 ( 6) CCCTGATGTCCTCGGATCGAAACCG 1 chrXIII:378573-380026 ( 64) TCGAAGGGTTGCAGGTTCAATTCCT 1 chrXI:302650-303303 ( 63) TCGAAGGGTTGCAGGTTCAATTCCT 1 chrVII:286996-287799 ( 13) TCGAAGGGTTGCAGGTTCAATTCCT 1 chrVII:706933-707356 ( 24) TCTGTTGGTCCTTAGTTCGATCCTG 1 chrVII:700192-701311 ( 21) CTTCGGAGGCGCGGGTTCAAACCCC 1 chrII:347365-347960 ( 40) GGTTGTCCGCGCGAGTTCGAACCTC 1 chrII:9341-9918 ( 53) GGTTGTCCGCGCGAGTTCGAACCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCNKRAGRTCVBSGGTTCGAHYCCS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 44916 bayes= 10.7099 E= 3.1e-278 -1277 23 23 85 -1277 194 64 -447 -57 -9 91 -22 -77 -109 123 -8 28 -1277 153 -189 114 -1277 49 -289 -247 -51 202 -215 33 -268 164 -1277 -189 -87 -209 128 -1277 220 -1277 -101 23 97 41 -347 -347 78 71 17 -289 128 145 -447 -57 -168 191 -289 -1277 -1277 245 -1277 -347 -1277 -1277 161 -1277 -1277 -1277 166 -1277 245 -1277 -1277 -39 -1277 205 -1277 166 -1277 -1277 -1277 -39 23 -51 39 -347 149 -1277 53 -1277 245 -1277 -1277 -289 191 -168 -57 -1277 145 132 -289 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCNKRAGRTCVBSGGTTCGAHYCCS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 70 E= 3.1e-278 0.000000 0.214286 0.214286 0.571429 0.000000 0.700000 0.285714 0.014286 0.214286 0.171429 0.342857 0.271429 0.185714 0.085714 0.428571 0.300000 0.385714 0.000000 0.528571 0.085714 0.700000 0.000000 0.257143 0.042857 0.057143 0.128571 0.742857 0.071429 0.400000 0.028571 0.571429 0.000000 0.085714 0.100000 0.042857 0.771429 0.000000 0.842857 0.000000 0.157143 0.371429 0.357143 0.242857 0.028571 0.028571 0.314286 0.300000 0.357143 0.042857 0.442857 0.500000 0.014286 0.214286 0.057143 0.685714 0.042857 0.000000 0.000000 1.000000 0.000000 0.028571 0.000000 0.000000 0.971429 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.242857 0.000000 0.757143 0.000000 1.000000 0.000000 0.000000 0.000000 0.242857 0.214286 0.128571 0.414286 0.028571 0.514286 0.000000 0.457143 0.000000 1.000000 0.000000 0.000000 0.042857 0.685714 0.057143 0.214286 0.000000 0.500000 0.457143 0.042857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCNKRAGRTCVBSGGTTCGAHYCCS MEME-1 regular expression -------------------------------------------------------------------------------- [TCG][CG][GTA][GT][GA][AG]G[GA]TC[ACG][TCG][GC][GA]GTTC[GA]A[TAC][CT]C[CT][CG] -------------------------------------------------------------------------------- Time 337.98 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCSMAGTTGGTWAAGSSVT MEME-2 width = 21 sites = 61 llr = 996 E-value = 9.3e-161 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCSMAGTTGGTWAAGSSVT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :2:::3a3:::::4561::21 pos.-specific C :::964:::2::1::2:4432 probability G :7a:41:722a8::2294641 matrix T 9::1:2::86:29621:2:16 bits 2.5 * * 2.2 * * 2.0 * * * 1.7 ** * * Relative 1.5 ** ** ** * * Entropy 1.2 **** ** *** * * (23.6 bits) 1.0 ***** *** *** * * 0.7 ***** *** *** *** 0.5 ***** ******** *** 0.2 ********************* 0.0 --------------------- Multilevel TGGCCCAGTTGGTTAAGGGGT consensus A GA A C AG CCCC sequence T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCSMAGTTGGTWAAGSSVT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXV:487184-487742 + 33 1.11e-11 TTAGACTCCA TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrXIV:632387-632923 + 1 1.11e-11 . TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrXIV:102493-103043 + 5 1.11e-11 TCCA TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrXII:975776-976291 - 46 1.11e-11 AAAGACTCCA TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrVII:730900-731438 + 25 1.11e-11 AAAGACTCCA TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrVI:137107-137982 - 38 1.11e-11 ACTGACTCCA TGGCCAAGTTGGTTAAGGCGT GCGACTGTTA chrIII:127527-127872 + 74 1.11e-11 AATGACTCCA TGGCCAAGTTGGTTAAGGCGT GCGACT chrXVI:819136-819974 + 31 2.70e-11 AATGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrXIV:602116-602593 + 15 2.70e-11 AATGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrXII:1051583-1052701 - 25 2.70e-11 CATGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrV:442952-443518 - 63 2.70e-11 TTTGGTCTCT TGGCCCAGTTGGTTAAGGCAC CGTGCTAATA chrXV:853972-854440 - 76 4.21e-11 CACA TGGCGCAGTTGGTAGCGCGCT TCCCTTGCAA chrXII:214621-215180 - 78 4.21e-11 CA TGGCGCAGTTGGTAGCGCGCT TCCCTTGCAA chrV:311771-312313 - 76 4.21e-11 CACA TGGCGCAGTTGGTAGCGCGCT TCCCTTGCAA chrXIV:560225-561257 - 47 1.54e-10 CGGGCTTCTA TGGCCAAGTTGGTAAGGCGCC ACACTAGTAA chrX:58790-59477 - 62 1.54e-10 GAAGCTTCTA TGGCCAAGTTGGTAAGGCGCC ACACTAGTAA chrIX:325475-326128 + 4 1.54e-10 CTA TGGCCAAGTTGGTAAGGCGCC ACACTAGTAA chrIX:174756-175354 + 33 1.54e-10 CGAGCTTCTA TGGCCAAGTTGGTAAGGCGCC ACACTAGTAA chrXII:656716-657200 - 71 7.43e-10 TTGGGCGTG TGGCGTAGTCGGTAGCGCGCT CCCTTAGCAT chrX:197180-197622 - 7 7.43e-10 TTAGGGCGTG TGGCGTAGTCGGTAGCGCGCT CCCTTA chrIV:410126-410737 + 5 7.43e-10 CGTG TGGCGTAGTCGGTAGCGCGCT CCCTTAGCAT chrXII:731880-732263 + 76 8.55e-10 AATGGGAGTT TGGCCGAGTGGTTTAAGGCGT CAGA chrXII:784169-784550 + 52 5.75e-09 ACCGTCCCAG TGGCCGAGTGGTTAAGGCGAT GCCTGCTATT chrIX:248635-249041 + 69 9.00e-09 TTAGGCACTA TGGCCGAGTGGTTAAGGCGAC AGACTTGAAA chrIII:227704-228214 + 40 1.69e-08 AATGGCACTA TGGCCGAGTGGTTAAGGCGAG AGACTCGAAT chrVII:876138-876736 + 14 2.06e-08 ATAGCCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrVII:185373-186089 - 78 2.06e-08 GT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrVII:121905-122655 + 46 2.06e-08 TTAGCCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrVI:226500-226945 - 61 2.06e-08 AATGCCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrIV:1352332-1352766 - 12 2.06e-08 ATAGCCTTGT TGGCGCAATCGGTAGCGCGTA TGACTCTTAA chrIV:980722-981283 - 76 2.76e-08 AACT TGGCCGAGTGGTTAAGGCGAA AGATTAGAAA chrIV:519519-519963 + 59 2.76e-08 TACGGAGGGT TGGCCGAGTGGTCTAAGGCGG CAGACTTAAG chrII:9341-9918 + 11 2.76e-08 CGTGGAGGGT TGGCCGAGTGGTCTAAGGCGG CAGACTTAAG chrI:182326-182784 - 71 2.76e-08 TTGGCAACT TGGCCGAGTGGTTAAGGCGAA AGATTAGAAA chrXIII:420276-420978 - 57 3.34e-08 ACAGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrXIII:372178-372758 - 73 3.34e-08 GGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrXI:379481-379922 + 36 3.34e-08 ATAGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrXI:307968-308462 - 25 3.34e-08 AGTGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrVII:823254-823693 + 66 3.34e-08 AGTGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrVII:412094-412601 - 43 3.34e-08 ACTGGTTTCG TGGTCTAGTCGGTTATGGCAT CTGCTTAACA chrIV:83106-84017 + 35 3.34e-08 CAAGTTCACT TAGCGCAAGTGGTTTAGTGGT AAAATCCAAC chrXIII:168564-169080 + 30 6.83e-08 TCACTCTCGG TAGCCAAGTTGGTTTAAGGCG CAAGACTGTA chrX:353964-354621 + 9 6.83e-08 ACTCTCGG TAGCCAAGTTGGTTTAAGGCG CAAGACTGTA chrVI:210411-210929 - 60 6.83e-08 CGACTCTCGG TAGCCAAGTTGGTTTAAGGCG CAAGACTGTA chrVI:167242-167724 + 11 6.83e-08 CGACTCTCGG TAGCCAAGTTGGTTTAAGGCG CAAGACTGTA chrXVI:571742-572869 + 12 7.44e-08 ACACAATACT TCGCGCAAGTGGTTTAGTGGT AAAATCCAAC chrXIII:183779-184191 - 15 7.44e-08 CCAATAAAGA TCGCGCAAGTGGTTTAGTGGT AAAATCCAAC chrXVI:559985-560535 - 52 1.93e-07 TGAGCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrXIII:352087-352516 + 36 1.93e-07 TAAGCGGATT TAGCTCAGTTGGGAGAGCGCC AGACTGAAGA chrIV:1256845-1257315 - 31 2.24e-07 TAGATCTTCT TAGCGAAAGTGGTTCAGTGGT TAGAATTCAT chrVII:857215-857686 - 64 2.40e-07 AGTGGTTGTT TGGCCGAGCGGTCTAAGGCGC CTGATTCAAG chrX:531531-532212 + 5 2.97e-07 TAGT GAGCGCAAGTGGTTTAGTGGT AAAATCCAAC chrXVI:860049-860695 + 55 3.19e-07 TGTAAATAAC AAGCGCAAGTGGTTTAGTGGT AAAATCCAAC chrVII:930352-931690 - 34 3.19e-07 TATAATCAGT AAGCGCAAGTGGTTTAGTGGT AAAATCCAAC chrVI:161979-162455 + 59 3.19e-07 ACAAGAAAAC AAGCGCAAGTGGTTTAGTGGT AAAATCCAAC chrIV:488421-489219 - 73 3.91e-07 GGTCCAA TGGTCCAGTGGTTCAAGACGT CGCCTTTACA chrII:326530-327233 - 7 3.91e-07 CCGGGTCCAA TGGTCCAGTGGTTCAAGACGT CGCCTT chrXV:226402-226969 - 28 4.47e-07 TCAAGAAATT CAGCGCAAGTGGTTTAGTGGT AAAATCCAAC chrXV:281688-282613 + 62 5.42e-07 TAACATGAAA GCGCGCAAGTGGTTTAGTGGT AAAATCCAAC chrIV:619670-620410 - 24 7.40e-07 TTGTTCCTCG TGGCCCAATGGTCACGGCGTC TGGCTACGAA chrV:77968-79464 + 55 2.44e-06 GGTCCATCGA TGGTGTCGTCGGTAGAACCTT GTACAAGAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCSMAGTTGGTWAAGSSVT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:487184-487742 1.1e-11 32_[+2]_47 chrXIV:632387-632923 1.1e-11 [+2]_79 chrXIV:102493-103043 1.1e-11 4_[+2]_75 chrXII:975776-976291 1.1e-11 45_[-2]_34 chrVII:730900-731438 1.1e-11 24_[+2]_55 chrVI:137107-137982 1.1e-11 37_[-2]_42 chrIII:127527-127872 1.1e-11 73_[+2]_6 chrXVI:819136-819974 2.7e-11 30_[+2]_49 chrXIV:602116-602593 2.7e-11 14_[+2]_65 chrXII:1051583-1052701 2.7e-11 24_[-2]_55 chrV:442952-443518 2.7e-11 62_[-2]_17 chrXV:853972-854440 4.2e-11 75_[-2]_4 chrXII:214621-215180 4.2e-11 77_[-2]_2 chrV:311771-312313 4.2e-11 75_[-2]_4 chrXIV:560225-561257 1.5e-10 46_[-2]_33 chrX:58790-59477 1.5e-10 61_[-2]_18 chrIX:325475-326128 1.5e-10 3_[+2]_76 chrIX:174756-175354 1.5e-10 32_[+2]_47 chrXII:656716-657200 7.4e-10 70_[-2]_9 chrX:197180-197622 7.4e-10 6_[-2]_73 chrIV:410126-410737 7.4e-10 4_[+2]_75 chrXII:731880-732263 8.5e-10 75_[+2]_4 chrXII:784169-784550 5.7e-09 51_[+2]_28 chrIX:248635-249041 9e-09 68_[+2]_11 chrIII:227704-228214 1.7e-08 39_[+2]_40 chrVII:876138-876736 2.1e-08 13_[+2]_66 chrVII:185373-186089 2.1e-08 77_[-2]_2 chrVII:121905-122655 2.1e-08 45_[+2]_34 chrVI:226500-226945 2.1e-08 60_[-2]_19 chrIV:1352332-1352766 2.1e-08 11_[-2]_68 chrIV:980722-981283 2.8e-08 75_[-2]_4 chrIV:519519-519963 2.8e-08 58_[+2]_21 chrII:9341-9918 2.8e-08 10_[+2]_69 chrI:182326-182784 2.8e-08 70_[-2]_9 chrXIII:420276-420978 3.3e-08 56_[-2]_23 chrXIII:372178-372758 3.3e-08 72_[-2]_7 chrXI:379481-379922 3.3e-08 35_[+2]_44 chrXI:307968-308462 3.3e-08 24_[-2]_55 chrVII:823254-823693 3.3e-08 65_[+2]_14 chrVII:412094-412601 3.3e-08 42_[-2]_37 chrIV:83106-84017 3.3e-08 34_[+2]_45 chrXIII:168564-169080 6.8e-08 29_[+2]_50 chrX:353964-354621 6.8e-08 8_[+2]_71 chrVI:210411-210929 6.8e-08 59_[-2]_20 chrVI:167242-167724 6.8e-08 10_[+2]_69 chrXVI:571742-572869 7.4e-08 11_[+2]_68 chrXIII:183779-184191 7.4e-08 14_[-2]_65 chrXVI:559985-560535 1.9e-07 51_[-2]_28 chrXIII:352087-352516 1.9e-07 35_[+2]_44 chrIV:1256845-1257315 2.2e-07 30_[-2]_49 chrVII:857215-857686 2.4e-07 63_[-2]_16 chrX:531531-532212 3e-07 4_[+2]_75 chrXVI:860049-860695 3.2e-07 54_[+2]_25 chrVII:930352-931690 3.2e-07 33_[-2]_46 chrVI:161979-162455 3.2e-07 58_[+2]_21 chrIV:488421-489219 3.9e-07 72_[-2]_7 chrII:326530-327233 3.9e-07 6_[-2]_73 chrXV:226402-226969 4.5e-07 27_[-2]_52 chrXV:281688-282613 5.4e-07 61_[+2]_18 chrIV:619670-620410 7.4e-07 23_[-2]_56 chrV:77968-79464 2.4e-06 54_[+2]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCSMAGTTGGTWAAGSSVT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCSMAGTTGGTWAAGSSVT width=21 seqs=61 chrXV:487184-487742 ( 33) TGGCCAAGTTGGTTAAGGCGT 1 chrXIV:632387-632923 ( 1) TGGCCAAGTTGGTTAAGGCGT 1 chrXIV:102493-103043 ( 5) TGGCCAAGTTGGTTAAGGCGT 1 chrXII:975776-976291 ( 46) TGGCCAAGTTGGTTAAGGCGT 1 chrVII:730900-731438 ( 25) TGGCCAAGTTGGTTAAGGCGT 1 chrVI:137107-137982 ( 38) TGGCCAAGTTGGTTAAGGCGT 1 chrIII:127527-127872 ( 74) TGGCCAAGTTGGTTAAGGCGT 1 chrXVI:819136-819974 ( 31) TGGCCCAGTTGGTTAAGGCAC 1 chrXIV:602116-602593 ( 15) TGGCCCAGTTGGTTAAGGCAC 1 chrXII:1051583-1052701 ( 25) TGGCCCAGTTGGTTAAGGCAC 1 chrV:442952-443518 ( 63) TGGCCCAGTTGGTTAAGGCAC 1 chrXV:853972-854440 ( 76) TGGCGCAGTTGGTAGCGCGCT 1 chrXII:214621-215180 ( 78) TGGCGCAGTTGGTAGCGCGCT 1 chrV:311771-312313 ( 76) TGGCGCAGTTGGTAGCGCGCT 1 chrXIV:560225-561257 ( 47) TGGCCAAGTTGGTAAGGCGCC 1 chrX:58790-59477 ( 62) TGGCCAAGTTGGTAAGGCGCC 1 chrIX:325475-326128 ( 4) TGGCCAAGTTGGTAAGGCGCC 1 chrIX:174756-175354 ( 33) TGGCCAAGTTGGTAAGGCGCC 1 chrXII:656716-657200 ( 71) TGGCGTAGTCGGTAGCGCGCT 1 chrX:197180-197622 ( 7) TGGCGTAGTCGGTAGCGCGCT 1 chrIV:410126-410737 ( 5) TGGCGTAGTCGGTAGCGCGCT 1 chrXII:731880-732263 ( 76) TGGCCGAGTGGTTTAAGGCGT 1 chrXII:784169-784550 ( 52) TGGCCGAGTGGTTAAGGCGAT 1 chrIX:248635-249041 ( 69) TGGCCGAGTGGTTAAGGCGAC 1 chrIII:227704-228214 ( 40) TGGCCGAGTGGTTAAGGCGAG 1 chrVII:876138-876736 ( 14) TGGCGCAATCGGTAGCGCGTA 1 chrVII:185373-186089 ( 78) TGGCGCAATCGGTAGCGCGTA 1 chrVII:121905-122655 ( 46) TGGCGCAATCGGTAGCGCGTA 1 chrVI:226500-226945 ( 61) TGGCGCAATCGGTAGCGCGTA 1 chrIV:1352332-1352766 ( 12) TGGCGCAATCGGTAGCGCGTA 1 chrIV:980722-981283 ( 76) TGGCCGAGTGGTTAAGGCGAA 1 chrIV:519519-519963 ( 59) TGGCCGAGTGGTCTAAGGCGG 1 chrII:9341-9918 ( 11) TGGCCGAGTGGTCTAAGGCGG 1 chrI:182326-182784 ( 71) TGGCCGAGTGGTTAAGGCGAA 1 chrXIII:420276-420978 ( 57) TGGTCTAGTCGGTTATGGCAT 1 chrXIII:372178-372758 ( 73) TGGTCTAGTCGGTTATGGCAT 1 chrXI:379481-379922 ( 36) TGGTCTAGTCGGTTATGGCAT 1 chrXI:307968-308462 ( 25) TGGTCTAGTCGGTTATGGCAT 1 chrVII:823254-823693 ( 66) TGGTCTAGTCGGTTATGGCAT 1 chrVII:412094-412601 ( 43) TGGTCTAGTCGGTTATGGCAT 1 chrIV:83106-84017 ( 35) TAGCGCAAGTGGTTTAGTGGT 1 chrXIII:168564-169080 ( 30) TAGCCAAGTTGGTTTAAGGCG 1 chrX:353964-354621 ( 9) TAGCCAAGTTGGTTTAAGGCG 1 chrVI:210411-210929 ( 60) TAGCCAAGTTGGTTTAAGGCG 1 chrVI:167242-167724 ( 11) TAGCCAAGTTGGTTTAAGGCG 1 chrXVI:571742-572869 ( 12) TCGCGCAAGTGGTTTAGTGGT 1 chrXIII:183779-184191 ( 15) TCGCGCAAGTGGTTTAGTGGT 1 chrXVI:559985-560535 ( 52) TAGCTCAGTTGGGAGAGCGCC 1 chrXIII:352087-352516 ( 36) TAGCTCAGTTGGGAGAGCGCC 1 chrIV:1256845-1257315 ( 31) TAGCGAAAGTGGTTCAGTGGT 1 chrVII:857215-857686 ( 64) TGGCCGAGCGGTCTAAGGCGC 1 chrX:531531-532212 ( 5) GAGCGCAAGTGGTTTAGTGGT 1 chrXVI:860049-860695 ( 55) AAGCGCAAGTGGTTTAGTGGT 1 chrVII:930352-931690 ( 34) AAGCGCAAGTGGTTTAGTGGT 1 chrVI:161979-162455 ( 59) AAGCGCAAGTGGTTTAGTGGT 1 chrIV:488421-489219 ( 73) TGGTCCAGTGGTTCAAGACGT 1 chrII:326530-327233 ( 7) TGGTCCAGTGGTTCAAGACGT 1 chrXV:226402-226969 ( 28) CAGCGCAAGTGGTTTAGTGGT 1 chrXV:281688-282613 ( 62) GCGCGCAAGTGGTTTAGTGGT 1 chrIV:619670-620410 ( 24) TGGCCCAATGGTCACGGCGTC 1 chrV:77968-79464 ( 55) TGGTGTCGTCGGTAGAACCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCSMAGTTGGTWAAGSSVT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 47280 bayes= 10.2875 E= 9.3e-161 -269 -348 -248 151 -57 -189 201 -1257 -1257 -1257 245 -1257 -1257 222 -1257 -110 -1257 173 98 -327 -27 122 -31 -95 163 -348 -1257 -1257 -27 -1257 201 -1257 -1257 -348 -16 137 -1257 43 11 81 -1257 -1257 245 -1257 -1257 -1257 214 -69 -1257 -148 -248 151 31 -248 -1257 85 73 -248 33 -57 81 -2 -16 -169 -195 -1257 233 -1257 -327 111 116 -95 -1257 111 173 -1257 -37 52 104 -147 -147 22 -67 81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCSMAGTTGGTWAAGSSVT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 61 E= 9.3e-161 0.049180 0.016393 0.032787 0.901639 0.213115 0.049180 0.737705 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.852459 0.000000 0.147541 0.000000 0.606557 0.360656 0.032787 0.262295 0.426230 0.147541 0.163934 0.983607 0.016393 0.000000 0.000000 0.262295 0.000000 0.737705 0.000000 0.000000 0.016393 0.163934 0.819672 0.000000 0.245902 0.196721 0.557377 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.803279 0.196721 0.000000 0.065574 0.032787 0.901639 0.393443 0.032787 0.000000 0.573770 0.524590 0.032787 0.229508 0.213115 0.557377 0.180328 0.163934 0.098361 0.081967 0.000000 0.918033 0.000000 0.032787 0.393443 0.409836 0.163934 0.000000 0.393443 0.606557 0.000000 0.245902 0.262295 0.377049 0.114754 0.114754 0.213115 0.114754 0.557377 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCSMAGTTGGTWAAGSSVT MEME-2 regular expression -------------------------------------------------------------------------------- T[GA]GC[CG][CA]A[GA]T[TC]GGT[TA][AGT]AG[GC][GC][GCA][TC] -------------------------------------------------------------------------------- Time 647.03 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAWAAYGVCMRCKVCGRGAHTCGAACC MEME-3 width = 30 sites = 29 llr = 613 E-value = 4.1e-088 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAWAAYGVCMRCKVCGRGAHTCGAACC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 89889777:13:43323224:94::19a:: pos.-specific C 1:::::::5:36427:35::::2:8:::a8 probability G ::11::11183214133166a11::9:::: matrix T :11:1312411221:5:21:::3a2:1::2 bits 2.5 * * 2.2 * * 2.0 * * * 1.7 * * * ** Relative 1.5 * * *** *** Entropy 1.2 * * * *** ******* (30.5 bits) 1.0 ** * * * *** ******* 0.7 ******* ** * * **** ******* 0.5 ********** * ******** ******* 0.2 ********************** ******* 0.0 ------------------------------ Multilevel AAAAAAAACGCCAGCTACGGGAATCGAACC consensus T TT GTCAAGCAAA T T T sequence A AG C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAWAAYGVCMRCKVCGRGAHTCGAACC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrX:523741-524317 + 25 2.80e-14 AAGGGAAATA AAAAATAACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrVII:561353-561969 + 43 2.80e-14 CGGAAAACTC AAAAATAACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrI:182326-182784 + 9 2.80e-14 CAGTAAAA AAAAATAACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrIV:437492-438223 - 25 1.93e-13 TTGGGAATAT AAAAATGACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrXII:591839-593186 + 49 7.09e-13 GCAAAAAACA AAAAATAATGAGAGCTAAGGGATTCGAACC CTTGCATCCG chrX:617750-618244 - 51 7.09e-13 AAAAAATACA AAAAATAATGAGAGCTAAGGGATTCGAACC CTTGCATCCG chrV:434380-434763 + 12 6.26e-12 GACAGGTAAA AAAGAAAATGCCATCTCCTAGAATCGAACC AGGGTTTCAT chrVIII:62494-63112 - 52 3.02e-11 CAATTTCAAA AAAATAAATGCCATCTCCTAGAATCGAACC AGGGTTTCAT chrXIII:195672-196422 + 63 3.36e-11 AAAAAAATAT CAAAAAAAGGGGCGAGCTGGGAATTGAACC CAGGGCCT chrXII:627927-629013 - 56 3.36e-11 TTCGGAAGGC AAAAATAATGGTTGCTAAGAGATTCGAACT CTTGCATCTT chrVII:422873-423558 - 19 3.36e-11 TTAAATGGAA AAAAATAATGGTTGCTAAGAGATTCGAACT CTTGCATCTT chrVII:205167-206158 - 1 3.36e-11 CAAAAAGATA AAAAATAATGGTTGCTAAGAGATTCGAACT chrI:180916-181518 - 66 3.36e-11 AAAGA AAAAATAATGGTTGCTAAGAGATTCGAACT CTTGCATCTT chrXI:313149-313717 + 10 5.63e-11 AAAGGAAAA AAATAAAATGCCATCTCCTAGAATCGAACC AGGGTTTCAT chrXII:374208-374678 - 13 8.40e-11 TTGTCGGAGC AAAAAAATCTTCCCCGCCAGGACTTGAACC TGGAATCTTC chrVII:828226-829162 + 71 1.36e-10 TTTTTATTGC AAAAAAAGCACTCACGATGGGGGTCGAACC chrVII:405284-405849 - 4 1.36e-10 AAGCTTATTC AAAAAAAGCACTCACGATGGGGGTCGAACC CAT chrIV:980722-981283 + 14 1.50e-10 GAAAATTTTT GGTAAAAACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrXV:274471-275019 - 57 2.38e-10 ATTCACAAAA AAGAAATGCGTCACAGACAGGATTCGAACC TGCGCAGGTA chrXIV:631497-632143 + 68 3.40e-10 GATAAAAATA AATCAATGGGGGCGAGCCGGGACTCGAACC CGG chrXIV:567846-568627 - 10 7.93e-10 ATGGTGAAAA AATATAAAGGGGCGAGCTGGGAATTGAACC CAGGGCCTC chrXI:458310-459021 - 34 9.33e-10 ATAAAAAAAT ATAAAATATGGTTGCTAAGAGATTCGAACT CTTGCATCTT chrXVI:810438-811108 - 5 1.01e-09 CTAATTTAGT AAAAAATACGACCCCAGTGAGGGTTGAACT CACG chrXIII:463268-463916 - 62 1.88e-09 TGGTCTGAT AAAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrIX:335835-336812 + 68 1.88e-09 CAGTTATGGT AAAAAAATCTCCGCGACGGGGAATTGAACC CCG chrXIII:320916-321324 + 69 2.93e-09 AGCCAAAAAA ATAAAAAATGGACGAGTCCGGAATCGAACC GG chrXII:92235-92945 - 24 4.80e-09 CCTGTTTAGT CAGGAAGTCGCCCAAAGCGAGAATCATACC ACTAGACCAC chrVIII:388609-389254 + 69 4.80e-09 CCTGTTTAGG CAGGAAGTCGCCCAAAGCGAGAATCATACC AC chrVI:100991-101751 - 71 4.80e-09 . CAGGAAGTCGCCCAAAGCGAGAATCATACC ACTAGACCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAWAAYGVCMRCKVCGRGAHTCGAACC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:523741-524317 2.8e-14 24_[+3]_46 chrVII:561353-561969 2.8e-14 42_[+3]_28 chrI:182326-182784 2.8e-14 8_[+3]_62 chrIV:437492-438223 1.9e-13 24_[-3]_46 chrXII:591839-593186 7.1e-13 48_[+3]_22 chrX:617750-618244 7.1e-13 50_[-3]_20 chrV:434380-434763 6.3e-12 11_[+3]_59 chrVIII:62494-63112 3e-11 51_[-3]_19 chrXIII:195672-196422 3.4e-11 62_[+3]_8 chrXII:627927-629013 3.4e-11 55_[-3]_15 chrVII:422873-423558 3.4e-11 18_[-3]_52 chrVII:205167-206158 3.4e-11 [-3]_70 chrI:180916-181518 3.4e-11 65_[-3]_5 chrXI:313149-313717 5.6e-11 9_[+3]_61 chrXII:374208-374678 8.4e-11 12_[-3]_58 chrVII:828226-829162 1.4e-10 70_[+3] chrVII:405284-405849 1.4e-10 3_[-3]_67 chrIV:980722-981283 1.5e-10 13_[+3]_57 chrXV:274471-275019 2.4e-10 56_[-3]_14 chrXIV:631497-632143 3.4e-10 67_[+3]_3 chrXIV:567846-568627 7.9e-10 9_[-3]_61 chrXI:458310-459021 9.3e-10 33_[-3]_37 chrXVI:810438-811108 1e-09 4_[-3]_66 chrXIII:463268-463916 1.9e-09 61_[-3]_9 chrIX:335835-336812 1.9e-09 67_[+3]_3 chrXIII:320916-321324 2.9e-09 68_[+3]_2 chrXII:92235-92945 4.8e-09 23_[-3]_47 chrVIII:388609-389254 4.8e-09 68_[+3]_2 chrVI:100991-101751 4.8e-09 70_[-3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAWAAYGVCMRCKVCGRGAHTCGAACC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAWAAYGVCMRCKVCGRGAHTCGAACC width=30 seqs=29 chrX:523741-524317 ( 25) AAAAATAACGACAACTGCAGGACTCGAACC 1 chrVII:561353-561969 ( 43) AAAAATAACGACAACTGCAGGACTCGAACC 1 chrI:182326-182784 ( 9) AAAAATAACGACAACTGCAGGACTCGAACC 1 chrIV:437492-438223 ( 25) AAAAATGACGACAACTGCAGGACTCGAACC 1 chrXII:591839-593186 ( 49) AAAAATAATGAGAGCTAAGGGATTCGAACC 1 chrX:617750-618244 ( 51) AAAAATAATGAGAGCTAAGGGATTCGAACC 1 chrV:434380-434763 ( 12) AAAGAAAATGCCATCTCCTAGAATCGAACC 1 chrVIII:62494-63112 ( 52) AAAATAAATGCCATCTCCTAGAATCGAACC 1 chrXIII:195672-196422 ( 63) CAAAAAAAGGGGCGAGCTGGGAATTGAACC 1 chrXII:627927-629013 ( 56) AAAAATAATGGTTGCTAAGAGATTCGAACT 1 chrVII:422873-423558 ( 19) AAAAATAATGGTTGCTAAGAGATTCGAACT 1 chrVII:205167-206158 ( 1) AAAAATAATGGTTGCTAAGAGATTCGAACT 1 chrI:180916-181518 ( 66) AAAAATAATGGTTGCTAAGAGATTCGAACT 1 chrXI:313149-313717 ( 10) AAATAAAATGCCATCTCCTAGAATCGAACC 1 chrXII:374208-374678 ( 13) AAAAAAATCTTCCCCGCCAGGACTTGAACC 1 chrVII:828226-829162 ( 71) AAAAAAAGCACTCACGATGGGGGTCGAACC 1 chrVII:405284-405849 ( 4) AAAAAAAGCACTCACGATGGGGGTCGAACC 1 chrIV:980722-981283 ( 14) GGTAAAAACGACAACTGCAGGACTCGAACC 1 chrXV:274471-275019 ( 57) AAGAAATGCGTCACAGACAGGATTCGAACC 1 chrXIV:631497-632143 ( 68) AATCAATGGGGGCGAGCCGGGACTCGAACC 1 chrXIV:567846-568627 ( 10) AATATAAAGGGGCGAGCTGGGAATTGAACC 1 chrXI:458310-459021 ( 34) ATAAAATATGGTTGCTAAGAGATTCGAACT 1 chrXVI:810438-811108 ( 5) AAAAAATACGACCCCAGTGAGGGTTGAACT 1 chrXIII:463268-463916 ( 62) AAAAAAATCTCCGCGACGGGGAATTGAACC 1 chrIX:335835-336812 ( 68) AAAAAAATCTCCGCGACGGGGAATTGAACC 1 chrXIII:320916-321324 ( 69) ATAAAAAATGGACGAGTCCGGAATCGAACC 1 chrXII:92235-92945 ( 24) CAGGAAGTCGCCCAAAGCGAGAATCATACC 1 chrVIII:388609-389254 ( 69) CAGGAAGTCGCCCAAAGCGAGAATCATACC 1 chrVI:100991-101751 ( 71) CAGGAAGTCGCCCAAAGCGAGAATCATACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAWAAYGVCMRCKVCGRGAHTCGAACC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 41961 bayes= 10.383 E= 4.1e-088 138 -41 -240 -1150 150 -1150 -240 -220 126 -1150 -41 -162 132 -240 -41 -320 155 -1150 -1150 -220 105 -1150 -1150 12 119 -1150 -41 -120 105 -1150 -41 -62 -1150 150 -82 26 -220 -1150 218 -162 -20 92 76 -220 -320 159 -8 -39 26 105 -141 -88 12 -8 105 -162 -20 184 -141 -1150 -62 -1150 59 71 12 76 76 -320 -39 150 -141 -88 -39 -240 176 -162 38 -1150 168 -1150 -1150 -1150 245 -1150 150 -1150 -82 -1150 26 40 -82 -20 -1150 -1150 -1150 166 -1150 212 -1150 -62 -162 -1150 229 -1150 150 -1150 -1150 -162 166 -1150 -1150 -1150 -1150 245 -1150 -1150 -1150 212 -1150 -62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAWAAYGVCMRCKVCGRGAHTCGAACC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 29 E= 4.1e-088 0.827586 0.137931 0.034483 0.000000 0.896552 0.000000 0.034483 0.068966 0.758621 0.000000 0.137931 0.103448 0.793103 0.034483 0.137931 0.034483 0.931034 0.000000 0.000000 0.068966 0.655172 0.000000 0.000000 0.344828 0.724138 0.000000 0.137931 0.137931 0.655172 0.000000 0.137931 0.206897 0.000000 0.517241 0.103448 0.379310 0.068966 0.000000 0.827586 0.103448 0.275862 0.344828 0.310345 0.068966 0.034483 0.551724 0.172414 0.241379 0.379310 0.379310 0.068966 0.172414 0.344828 0.172414 0.379310 0.103448 0.275862 0.655172 0.068966 0.000000 0.206897 0.000000 0.275862 0.517241 0.344828 0.310345 0.310345 0.034483 0.241379 0.517241 0.068966 0.172414 0.241379 0.034483 0.620690 0.103448 0.413793 0.000000 0.586207 0.000000 0.000000 0.000000 1.000000 0.000000 0.896552 0.000000 0.103448 0.000000 0.379310 0.241379 0.103448 0.275862 0.000000 0.000000 0.000000 1.000000 0.000000 0.793103 0.000000 0.206897 0.103448 0.000000 0.896552 0.000000 0.896552 0.000000 0.000000 0.103448 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.793103 0.000000 0.206897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAWAAYGVCMRCKVCGRGAHTCGAACC MEME-3 regular expression -------------------------------------------------------------------------------- AAAAA[AT]A[AT][CT]G[CGA][CT][AC][GA][CA][TGA][ACG][CA][GA][GA]GA[ATC]T[CT]GAAC[CT] -------------------------------------------------------------------------------- Time 955.58 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6-229 1.80e-01 100 chrI:71578-73654 1.31e-02 19_[-1(1.59e-05)]_56 chrI:81918-82284 3.51e-01 100 chrI:138790-139347 1.86e-01 100 chrI:142106-143670 1.04e-01 31_[-2(4.18e-05)]_48 chrI:151597-152005 8.23e-01 100 chrI:166016-166823 6.22e-01 100 chrI:180916-181518 2.24e-09 65_[-3(3.36e-11)]_5 chrI:182326-182784 1.01e-16 8_[+3(2.80e-14)]_32_[-2(2.76e-08)]_\ 9 chrI:229203-230189 3.95e-01 100 chrII:9341-9918 4.73e-12 10_[+2(2.76e-08)]_34_[-3(2.85e-07)]_\ 5 chrII:36147-36600 8.69e-01 100 chrII:44922-45352 2.00e-01 100 chrII:60028-61286 8.98e-01 100 chrII:87962-88602 7.85e-01 100 chrII:88918-89975 7.76e-01 100 chrII:165118-165695 2.41e-03 51_[-2(8.45e-05)]_28 chrII:167820-171252 3.67e-01 100 chrII:181315-181610 4.58e-01 100 chrII:196950-197873 9.81e-01 100 chrII:226839-227795 8.38e-01 100 chrII:236489-237366 7.09e-01 100 chrII:254797-255720 9.13e-01 100 chrII:256342-257136 5.13e-01 100 chrII:266152-266729 3.98e-13 25_[+1(1.50e-10)]_50 chrII:300976-301578 9.99e-01 100 chrII:326530-327233 7.30e-05 6_[-2(3.91e-07)]_73 chrII:332262-334261 5.55e-01 100 chrII:347365-347960 1.00e-06 39_[+1(3.11e-07)]_36 chrII:350397-351175 6.71e-01 100 chrII:376279-378025 5.31e-01 100 chrII:405549-406300 2.53e-13 40_[+1(7.18e-11)]_35 chrII:415500-415911 1.95e-01 100 chrII:477095-477774 6.29e-04 55_[+2(8.35e-06)]_24 chrII:556151-558498 8.32e-01 100 chrII:591515-591811 9.29e-01 100 chrII:592328-593287 2.46e-01 100 chrII:604084-607159 7.56e-01 100 chrII:607325-607569 5.35e-02 100 chrII:642902-643324 9.91e-01 100 chrII:644967-645634 8.59e-01 100 chrIII:5-1298 6.80e-01 100 chrIII:14410-16889 9.93e-01 100 chrIII:29536-31149 9.38e-01 100 chrIII:56507-57006 3.37e-01 100 chrIII:81935-82805 6.13e-01 100 chrIII:107078-107779 3.44e-01 100 chrIII:113363-114355 9.66e-01 100 chrIII:123310-123835 1.14e-15 64_[-1(3.98e-14)]_11 chrIII:127527-127872 1.45e-07 73_[+2(1.11e-11)]_6 chrIII:141950-143021 4.39e-01 100 chrIII:161784-163892 3.50e-01 100 chrIII:168097-168633 2.04e-02 100 chrIII:169476-169755 8.82e-01 100 chrIII:177044-178792 1.67e-01 100 chrIII:227704-228214 1.38e-05 39_[+2(1.69e-08)]_40 chrIII:293657-294433 5.81e-01 100 chrIII:294625-295867 7.40e-01 100 chrIII:315659-316617 1.65e-01 100 chrIV:29-349 1.43e-01 100 chrIV:45196-46205 3.91e-01 100 chrIV:83106-84017 2.09e-11 34_[+2(3.34e-08)]_17_[+1(7.18e-11)]_\ 3 chrIV:116322-118220 6.29e-02 45_[+1(9.33e-05)]_30 chrIV:129457-131000 7.02e-01 100 chrIV:216640-216842 2.40e-01 100 chrIV:217053-218082 7.95e-01 100 chrIV:221083-222373 1.80e-01 100 chrIV:229249-230681 1.54e-01 100 chrIV:308007-310190 7.77e-01 100 chrIV:321597-321959 4.09e-01 100 chrIV:322149-323634 6.12e-01 100 chrIV:340186-341686 7.23e-01 100 chrIV:355055-356987 5.35e-02 100 chrIV:358035-358576 7.74e-01 100 chrIV:359079-359879 7.15e-01 100 chrIV:410126-410737 1.10e-17 4_[+2(7.43e-10)]_10_[+1(1.33e-10)]_\ 40 chrIV:411244-411660 2.14e-01 100 chrIV:433999-435148 7.41e-01 100 chrIV:437492-438223 9.03e-12 24_[-3(1.93e-13)]_46 chrIV:488421-489219 1.75e-13 36_[-1(4.62e-10)]_11_[-2(3.91e-07)]_\ 7 chrIV:489621-491265 2.04e-01 100 chrIV:491446-492669 1.14e-01 100 chrIV:509028-510354 1.42e-01 100 chrIV:519519-519963 1.82e-05 58_[+2(2.76e-08)]_21 chrIV:520193-521357 7.94e-01 100 chrIV:539005-539211 3.37e-01 100 chrIV:540875-542191 9.95e-01 100 chrIV:568376-569371 6.74e-01 100 chrIV:579043-580999 2.96e-01 100 chrIV:619670-620410 1.67e-03 23_[-2(7.40e-07)]_56 chrIV:644948-645393 3.11e-10 42_[-1(1.89e-10)]_33 chrIV:667741-668253 3.14e-14 69_[-1(4.74e-12)]_6 chrIV:802411-803031 2.46e-09 69_[-1(1.89e-10)]_6 chrIV:835770-836300 4.89e-01 100 chrIV:884147-884693 2.12e-01 100 chrIV:913958-914910 3.56e-01 100 chrIV:915295-916256 9.51e-01 100 chrIV:946145-946608 6.73e-07 39_[+1(1.16e-09)]_36 chrIV:980722-981283 3.53e-13 13_[+3(1.50e-10)]_32_[-2(2.76e-08)]_\ 4 chrIV:992608-993162 2.88e-12 32_[+1(7.18e-11)]_43 chrIV:1012684-1013944 7.66e-01 100 chrIV:1016516-1018154 7.88e-01 100 chrIV:1062659-1063109 3.16e-01 100 chrIV:1075269-1075802 1.98e-01 100 chrIV:1095081-1095724 1.10e-09 27_[-1(4.62e-10)]_48 chrIV:1150228-1151806 7.92e-01 100 chrIV:1175559-1176236 2.61e-09 19_[+1(1.28e-09)]_56 chrIV:1200815-1202910 7.38e-01 100 chrIV:1236381-1238753 9.80e-01 100 chrIV:1245683-1246170 9.88e-01 100 chrIV:1256845-1257315 1.28e-04 30_[-2(2.24e-07)]_49 chrIV:1300517-1301334 4.40e-01 100 chrIV:1301816-1302974 8.65e-02 5_[-3(5.64e-05)]_65 chrIV:1305185-1306015 3.35e-01 100 chrIV:1352332-1352766 9.85e-05 11_[-2(2.06e-08)]_68 chrIV:1354329-1355542 2.08e-01 100 chrIV:1355712-1356029 8.73e-01 100 chrIV:1359154-1361271 1.22e-01 100 chrIV:1401223-1401905 8.42e-02 100 chrIV:1441019-1442914 1.82e-01 100 chrIV:1449819-1451246 4.50e-01 100 chrIV:1461472-1462487 3.27e-01 100 chrIV:1488824-1489843 8.24e-01 100 chrIV:1525104-1525660 1.56e-01 100 chrIX:2-227 1.82e-01 100 chrIX:66946-69763 8.50e-01 100 chrIX:98504-100061 6.12e-01 100 chrIX:131836-132087 6.32e-01 100 chrIX:174756-175354 1.43e-14 32_[+2(1.54e-10)]_10_[+1(1.50e-10)]_\ 12 chrIX:182688-183752 8.69e-01 100 chrIX:197284-198011 1.28e-13 44_[-3(7.61e-11)]_26 chrIX:210514-210957 1.46e-14 18_[+1(4.74e-12)]_57 chrIX:231202-232433 4.22e-01 100 chrIX:248635-249041 5.07e-05 68_[+2(9.00e-09)]_11 chrIX:254251-254543 1.71e-01 100 chrIX:254972-257182 1.31e-01 100 chrIX:257361-258154 3.39e-01 100 chrIX:300007-300683 8.01e-01 100 chrIX:316120-318272 2.23e-01 100 chrIX:323956-324583 3.43e-01 100 chrIX:325475-326128 2.28e-19 3_[+2(1.54e-10)]_10_[+1(1.50e-10)]_\ 41 chrIX:335835-336812 8.24e-07 67_[+3(1.88e-09)]_3 chrIX:370179-370637 6.66e-01 100 chrIX:438528-439885 3.23e-01 100 chrV:6153-6548 7.37e-01 100 chrV:51878-53016 9.10e-01 100 chrV:53529-54261 5.96e-01 100 chrV:61024-62193 3.02e-01 100 chrV:66891-68854 4.00e-01 100 chrV:77968-79464 1.66e-03 54_[+2(2.44e-06)]_25 chrV:85140-85418 2.82e-02 100 chrV:85625-86941 9.75e-01 100 chrV:99596-100368 9.30e-01 100 chrV:110060-111148 9.91e-01 100 chrV:117175-118461 9.82e-02 100 chrV:130828-131445 1.97e-07 5_[-1(4.62e-10)]_70 chrV:135112-135718 3.29e-11 69_[-1(7.18e-11)]_6 chrV:138353-140904 4.99e-01 100 chrV:150921-151923 9.47e-01 100 chrV:166713-167666 4.35e-01 100 chrV:176743-177493 1.63e-06 67_[+1(5.14e-10)]_8 chrV:206764-207776 1.09e-01 100 chrV:250108-251521 4.25e-01 100 chrV:269180-270712 7.26e-01 100 chrV:287448-288799 6.84e-01 100 chrV:302723-303462 1.51e-01 100 chrV:303902-307658 6.78e-01 100 chrV:311771-312313 2.15e-17 40_[-1(3.73e-11)]_10_[-2(4.21e-11)]_\ 4 chrV:321503-323324 8.69e-01 100 chrV:354664-355425 8.54e-01 100 chrV:362144-362485 1.13e-01 100 chrV:363662-364326 5.26e-01 100 chrV:396157-397942 7.82e-01 100 chrV:405279-409341 1.47e-01 100 chrV:423098-425344 2.38e-01 100 chrV:430954-431606 1.28e-02 14_[-1(2.15e-05)]_61 chrV:434380-434763 3.71e-11 11_[+3(6.26e-12)]_59 chrV:434966-436065 7.87e-01 100 chrV:436293-436539 7.29e-01 100 chrV:438089-439261 2.37e-01 100 chrV:441575-442668 3.31e-01 100 chrV:442952-443518 7.29e-22 26_[-1(4.74e-12)]_11_[-2(2.70e-11)]_\ 17 chrV:469075-469770 7.29e-01 100 chrV:487172-487699 5.68e-01 100 chrV:492187-492741 4.79e-01 100 chrV:551001-551856 7.15e-02 24_[-3(3.85e-05)]_46 chrVI:4475-5386 2.43e-01 100 chrVI:63929-65411 5.74e-01 100 chrVI:82473-84825 9.29e-01 100 chrVI:95490-95884 3.32e-01 100 chrVI:100991-101751 2.38e-06 70_[-3(4.80e-09)] chrVI:137107-137982 1.94e-14 1_[-1(1.87e-09)]_11_[-2(1.11e-11)]_\ 42 chrVI:157551-158646 5.10e-01 100 chrVI:161979-162455 4.46e-04 58_[+2(3.19e-07)]_21 chrVI:167242-167724 1.04e-11 10_[+2(6.83e-08)]_26_[+1(1.16e-09)]_\ 18 chrVI:180666-181258 3.77e-09 71_[-1(7.18e-11)]_4 chrVI:191062-191836 4.45e-01 100 chrVI:204692-205471 3.21e-01 100 chrVI:210411-210929 4.70e-10 8_[-1(1.16e-09)]_26_[-2(6.83e-08)]_\ 20 chrVI:221589-222062 2.61e-01 100 chrVI:222935-224150 4.78e-01 100 chrVI:226500-226945 1.52e-14 25_[-1(7.18e-11)]_10_[-2(2.06e-08)]_\ 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