******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--HIR1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:5-1278 1.0000 100 chrI:81888-82284 1.0000 100 chrI:138820-139365 1.0000 100 chrI:142091-143667 1.0000 100 chrI:165963-166796 1.0000 100 chrI:180920-181559 1.0000 100 chrI:182337-183257 1.0000 100 chrI:229103-230190 1.0000 100 chrII:9335-9935 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chrXV:594123-594839 1.0000 100 chrXV:619568-624690 1.0000 100 chrXV:663486-664280 1.0000 100 chrXV:677760-679383 1.0000 100 chrXV:709966-710803 1.0000 100 chrXV:759154-759782 1.0000 100 chrXV:769730-770204 1.0000 100 chrXV:779704-780931 1.0000 100 chrXV:832317-832818 1.0000 100 chrXV:854003-854435 1.0000 100 chrXV:866538-867346 1.0000 100 chrXV:901466-902077 1.0000 100 chrXV:904314-905344 1.0000 100 chrXV:967417-968429 1.0000 100 chrXV:976163-978477 1.0000 100 chrXV:978848-979158 1.0000 100 chrXV:979778-981207 1.0000 100 chrXV:1003355-1005508 1.0000 100 chrXV:1025229-1026359 1.0000 100 chrXV:1028534-1029662 1.0000 100 chrXV:1070772-1071137 1.0000 100 chrXVI:55482-56628 1.0000 100 chrXVI:76194-76689 1.0000 100 chrXVI:135325-135878 1.0000 100 chrXVI:172778-174112 1.0000 100 chrXVI:188525-189282 1.0000 100 chrXVI:209565-210566 1.0000 100 chrXVI:277699-278419 1.0000 100 chrXVI:280609-282817 1.0000 100 chrXVI:302552-304722 1.0000 100 chrXVI:338697-339134 1.0000 100 chrXVI:378675-379011 1.0000 100 chrXVI:404512-405834 1.0000 100 chrXVI:406081-408486 1.0000 100 chrXVI:435649-436218 1.0000 100 chrXVI:520181-520547 1.0000 100 chrXVI:559669-560557 1.0000 100 chrXVI:571592-572602 1.0000 100 chrXVI:575793-576373 1.0000 100 chrXVI:581507-582466 1.0000 100 chrXVI:586420-587161 1.0000 100 chrXVI:587547-588099 1.0000 100 chrXVI:622151-622842 1.0000 100 chrXVI:689188-690212 1.0000 100 chrXVI:699938-700700 1.0000 100 chrXVI:701821-702589 1.0000 100 chrXVI:718470-719453 1.0000 100 chrXVI:731627-732333 1.0000 100 chrXVI:743777-744663 1.0000 100 chrXVI:768537-768754 1.0000 100 chrXVI:768935-770743 1.0000 100 chrXVI:775638-776230 1.0000 100 chrXVI:794348-794779 1.0000 100 chrXVI:794966-795994 1.0000 100 chrXVI:810390-810884 1.0000 100 chrXVI:819261-820003 1.0000 100 chrXVI:820538-820784 1.0000 100 chrXVI:856252-857233 1.0000 100 chrXVI:860097-860659 1.0000 100 chrXVI:880020-881135 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--HIR1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--HIR1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--HIR1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 576 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 57600 N= 576 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.314 C 0.186 G 0.186 T 0.314 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--HIR1/background): A 0.320 C 0.180 G 0.180 T 0.320 ******************************************************************************** ******************************************************************************** MOTIF MDVBSRGRATCGAACYSVBGAYCTYMHGV MEME-1 width = 29 sites = 54 llr = 1067 E-value = 5.5e-195 ******************************************************************************** -------------------------------------------------------------------------------- Motif MDVBSRGRATCGAACYSVBGAYCTYMHGV MEME-1 Description -------------------------------------------------------------------------------- Simplified A 333:13:44:::aa::13117::113315 pos.-specific C 6:444:::2:7:::a6523:156145333 probability G 143256a52::a::::44491131:1163 matrix T :213::::2a3::::31:2:1416412:: bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 * * ** * * Relative 1.5 * ****** * Entropy 1.2 * ****** * * (28.5 bits) 1.0 **** ******* * * * 0.7 * ***** ******** * ** * 0.5 ******** ***************** ** 0.2 ******** ***************** ** 0.0 ----------------------------- Multilevel CGCCGGGGATCGAACCCGGGACCTTCAGA consensus AAGTCA AG T TGAC TG CACCC sequence TAG T CT T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MDVBSRGRATCGAACYSVBGAYCTYMHGV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIV:631492-632205 + 54 3.37e-16 AATGGGGGCG AGCCGGGACTCGAACCCGGGACCTCCCGC ACCCTAAGCG chrXIII:586408-586922 + 27 8.78e-14 AAAATGATTT CGCCCAGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrXIII:372045-372815 + 71 8.78e-14 AAAATGATTT CGCCCAGGATCGAACTGGGGACGTTCTGC G chrXI:379491-379918 - 65 8.78e-14 TTGATTT CGCCCAGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrXI:307782-308543 + 38 8.78e-14 AAATTGATTT CGCCCAGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrVIII:85037-85602 + 35 8.78e-14 AAATTGATTT CGCCCAGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrVII:412059-412608 + 17 8.78e-14 AACTTGATTT CGCCCAGGATCGAACTGGGGACGTTCTGC GTGTTAAGCA chrII:326466-327200 + 15 1.61e-11 AGTTTGATCC AACCGAGGTTCGAACTCGGGATCTTCGCC GTGTAAAGGC chrXV:854003-854435 + 24 2.39e-11 AAATTGGACG CAACCGGAATCGAACCGATGACCTCTTCC TTGCAAGGGA chrXIII:183666-184184 + 29 2.39e-11 AATATGCGCA AGCCCGGAATCGAACCGGGGGCCCAACGA TGGCAACGTT chrVII:930364-931560 + 47 2.39e-11 AAAATGCGCA AGCCCGGAATCGAACCGGGGGCCCAACGA TGGCAACGTT chrIV:83281-83856 - 66 2.39e-11 TGCGCA AGCCCGGAATCGAACCGGGGGCCCAACGA TGGCAACGTT chrXIV:569609-570128 + 55 2.72e-11 AGAATGGTCT CTAGCGGGATCGAACCGCTGATCCCCGCG TTATTAGCAC chrV:550883-551687 + 56 2.72e-11 AAATTGGTCT CTAGCGGGATCGAACCGCTGATCCCCGCG TTATTAGCAC chrII:197148-197879 - 70 2.72e-11 CT CTAGCGGGATCGAACCGCTGATCCCCGCG TTATTAGCAC chrX:374176-374836 + 56 3.51e-11 AAAGCACTCA CGATGGGGGTCGAACCCATAATCTTCTGA TTAGAAGTCA chrVII:405109-405879 - 63 3.51e-11 AAGCACTCA CGATGGGGGTCGAACCCATAATCTTCTGA TTAGAAGTCA chrXII:604935-605651 + 63 3.98e-11 AAAGTGCTCG AGGTGGGGATTGAACCCACGACGGTCGCG TTGCTTTTA chrVIII:388612-389244 + 21 5.75e-11 TAATGGGGCG AGCTGGGAATTGAACCCAGGGCCTCTCGC ATGCTTTGTC chrXV:487213-487741 - 51 2.04e-10 TTAACGACCC CAGTGAGGGTTGAACTCACGATCTTGCGA TTAACAGTCG chrXIV:632385-632893 - 49 2.04e-10 AAAACGACCC CAGTGAGGGTTGAACTCACGATCTTGCGA TTAACAGTCG chrXIV:102433-103040 - 69 2.04e-10 CCC CAGTGAGGGTTGAACTCACGATCTTGCGA TTAACAGTCG chrXII:975689-976311 + 39 2.04e-10 TAAACGACCC CAGTGAGGGTTGAACTCACGATCTTGCGA TTAACAGTCG chrVII:730924-731395 - 67 2.04e-10 GACCC CAGTGAGGGTTGAACTCACGATCTTGCGA TTAACAGTCG chrVI:137059-138000 + 13 2.04e-10 AAAACGACCC CAGTGAGGGTTGAACTCACGATCTTGCGA TTAACAGTCG chrX:422491-423549 - 5 2.27e-10 AATGTGCTCC AGGGGAGGTTCGAACTCTCGACCTTCAGA TTAT chrX:197059-197631 + 24 2.27e-10 AAATTGGACG AGTCCGGAATCGAACCGGAGACCTCTCCC ATGCTAAGGG chrVI:204695-205231 + 17 2.27e-10 TAAATGGACG AGTCCGGAATCGAACCGGAGACCTCTCCC ATGCTAAGGG chrIV:410173-410724 - 19 2.27e-10 AATTTGGACG AGTCCGGAATCGAACCGGAGACCTCTCCC ATGCTAAGGG chrXV:113439-114216 - 63 2.53e-10 AAATGCTTC CAATCGGATTTGAACCGATGATCTCCACA TTACTAGTGT chrX:58634-59546 + 66 2.53e-10 TATATGCTTC CAATCGGATTTGAACCGATGATCTCCACA TTACTA chrIX:174807-175369 - 31 2.53e-10 AAATTGCTTC CAATCGGATTTGAACCGATGATCTCCACA TTACTAGTGT chrVII:876019-876845 - 50 4.72e-10 AGAAAGCCCT GTAGGGGGCTCGAACCCCTAACCTTATGA TTAAGAGTCA chrV:135181-135752 + 15 4.72e-10 AGAAAGCCCT GTAGGGGGCTCGAACCCCTAACCTTATGA TTAAGAGTCA chrIV:1200782-1202802 - 46 4.72e-10 TATTAGCCCT GTAGGGGGCTCGAACCCCTAACCTTATGA TTAAGAGTCA chrV:130713-131426 + 69 6.37e-10 AAATAGGTCT TACCCGGATTCGAACCGGGGTTGTTCGGA TCA chrV:492068-492733 + 8 8.54e-10 CCTTCCC CGCCAGGACTTGAACCTGGAATCTTCTGG TTCGTAGCCA chrIV:1094965-1095755 + 66 8.54e-10 AAAATGCGAA CTCTGTGGATCGAACACAGGACCTCCAGA TATCTT chrXII:875214-875642 - 59 1.64e-09 AGAACTCCTC ATAGGGGGCTCGAACCCCTGACATTTCGG TATCCTTGCT chrXIII:837646-838280 - 69 1.79e-09 CCC GGGGGCGAGTCGAACGCCCGATCTCAAGA TTTCGTAGTG chrXIII:168563-169149 - 43 1.79e-09 AATATCTCCC GGGGGCGAGTCGAACGCCCGATCTCAAGA TTTCGTAGTG chrXVI:435649-436218 + 16 2.34e-09 AGAAAGCTCG CACTCAGGATCGAACTAAGGACCAACAGA TTTGCAATCT chrVII:706925-707349 + 27 2.34e-09 AAAAAGCTCG CACTCAGGATCGAACTAAGGACCAACAGA TTTGCAATCT chrII:644960-645464 - 42 5.87e-09 ATAACTCCGA TACGGGGAGTCGAACCCCGGTCTCCACGG TGAAAGCGTG chrII:347352-347959 - 47 5.87e-09 TTACTGAAGG ATGCGAGGTTCGAACTCGCGCGGACAACC GTCCAACAGA chrII:9335-9935 - 47 5.87e-09 ATACTGAAGG ATGCGAGGTTCGAACTCGCGCGGACAACC GTCCAACAGA chrXII:167614-168278 + 54 1.94e-08 ATAACGACAA CTGCAGGACTCGAACCTGCGCGGGCAAAG CCCAAAAGAT chrIV:980731-981312 + 9 1.94e-08 AACGACAA CTGCAGGACTCGAACCTGCGCGGGCAAAG CCCAAAAGAT chrIV:437458-438226 - 27 1.94e-08 ATGACGACAA CTGCAGGACTCGAACCTGCGCGGGCAAAG CCCAAAAGAT chrX:517587-518121 + 15 2.56e-08 AGCTTAGCGC CGCTCGGTTTCGATCCGAGGACATCAGGG TTATGAGCCC chrV:287984-288883 + 66 7.97e-08 AAAACGACAC CAGCAGGATTTGAACCAGCGCGGGCAGAG CCCAAC chrXII:426940-427482 - 8 1.00e-07 AATTCTCCGC GACGGGGAATTGAACCCCGATCTGGCACG CGACAAG chrIV:568611-569351 - 70 1.00e-07 GC GACGGGGAATTGAACCCCGATCTGGCACG CGACAAGCGC chrXV:274465-275050 - 32 2.14e-07 AATGCGTCAC AGACAGGATTCGAACCTGCGCAGGTAAAA CCCAATGCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MDVBSRGRATCGAACYSVBGAYCTYMHGV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631492-632205 3.4e-16 53_[+1]_18 chrXIII:586408-586922 8.8e-14 26_[+1]_45 chrXIII:372045-372815 8.8e-14 70_[+1]_1 chrXI:379491-379918 8.8e-14 64_[-1]_7 chrXI:307782-308543 8.8e-14 37_[+1]_34 chrVIII:85037-85602 8.8e-14 34_[+1]_37 chrVII:412059-412608 8.8e-14 16_[+1]_55 chrII:326466-327200 1.6e-11 14_[+1]_57 chrXV:854003-854435 2.4e-11 23_[+1]_48 chrXIII:183666-184184 2.4e-11 28_[+1]_43 chrVII:930364-931560 2.4e-11 46_[+1]_25 chrIV:83281-83856 2.4e-11 65_[-1]_6 chrXIV:569609-570128 2.7e-11 54_[+1]_17 chrV:550883-551687 2.7e-11 55_[+1]_16 chrII:197148-197879 2.7e-11 69_[-1]_2 chrX:374176-374836 3.5e-11 55_[+1]_16 chrVII:405109-405879 3.5e-11 62_[-1]_9 chrXII:604935-605651 4e-11 62_[+1]_9 chrVIII:388612-389244 5.7e-11 20_[+1]_51 chrXV:487213-487741 2e-10 50_[-1]_21 chrXIV:632385-632893 2e-10 48_[-1]_23 chrXIV:102433-103040 2e-10 68_[-1]_3 chrXII:975689-976311 2e-10 38_[+1]_33 chrVII:730924-731395 2e-10 66_[-1]_5 chrVI:137059-138000 2e-10 12_[+1]_59 chrX:422491-423549 2.3e-10 4_[-1]_67 chrX:197059-197631 2.3e-10 23_[+1]_48 chrVI:204695-205231 2.3e-10 16_[+1]_55 chrIV:410173-410724 2.3e-10 18_[-1]_53 chrXV:113439-114216 2.5e-10 62_[-1]_9 chrX:58634-59546 2.5e-10 65_[+1]_6 chrIX:174807-175369 2.5e-10 30_[-1]_41 chrVII:876019-876845 4.7e-10 49_[-1]_22 chrV:135181-135752 4.7e-10 14_[+1]_57 chrIV:1200782-1202802 4.7e-10 45_[-1]_26 chrV:130713-131426 6.4e-10 68_[+1]_3 chrV:492068-492733 8.5e-10 7_[+1]_64 chrIV:1094965-1095755 8.5e-10 65_[+1]_6 chrXII:875214-875642 1.6e-09 58_[-1]_13 chrXIII:837646-838280 1.8e-09 68_[-1]_3 chrXIII:168563-169149 1.8e-09 42_[-1]_29 chrXVI:435649-436218 2.3e-09 15_[+1]_56 chrVII:706925-707349 2.3e-09 26_[+1]_45 chrII:644960-645464 5.9e-09 41_[-1]_30 chrII:347352-347959 5.9e-09 46_[-1]_25 chrII:9335-9935 5.9e-09 46_[-1]_25 chrXII:167614-168278 1.9e-08 53_[+1]_18 chrIV:980731-981312 1.9e-08 8_[+1]_63 chrIV:437458-438226 1.9e-08 26_[-1]_45 chrX:517587-518121 2.6e-08 14_[+1]_57 chrV:287984-288883 8e-08 65_[+1]_6 chrXII:426940-427482 1e-07 7_[-1]_64 chrIV:568611-569351 1e-07 69_[-1]_2 chrXV:274465-275050 2.1e-07 31_[-1]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MDVBSRGRATCGAACYSVBGAYCTYMHGV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MDVBSRGRATCGAACYSVBGAYCTYMHGV width=29 seqs=54 chrXIV:631492-632205 ( 54) AGCCGGGACTCGAACCCGGGACCTCCCGC 1 chrXIII:586408-586922 ( 27) CGCCCAGGATCGAACTGGGGACGTTCTGC 1 chrXIII:372045-372815 ( 71) CGCCCAGGATCGAACTGGGGACGTTCTGC 1 chrXI:379491-379918 ( 65) CGCCCAGGATCGAACTGGGGACGTTCTGC 1 chrXI:307782-308543 ( 38) CGCCCAGGATCGAACTGGGGACGTTCTGC 1 chrVIII:85037-85602 ( 35) CGCCCAGGATCGAACTGGGGACGTTCTGC 1 chrVII:412059-412608 ( 17) CGCCCAGGATCGAACTGGGGACGTTCTGC 1 chrII:326466-327200 ( 15) AACCGAGGTTCGAACTCGGGATCTTCGCC 1 chrXV:854003-854435 ( 24) CAACCGGAATCGAACCGATGACCTCTTCC 1 chrXIII:183666-184184 ( 29) AGCCCGGAATCGAACCGGGGGCCCAACGA 1 chrVII:930364-931560 ( 47) AGCCCGGAATCGAACCGGGGGCCCAACGA 1 chrIV:83281-83856 ( 66) AGCCCGGAATCGAACCGGGGGCCCAACGA 1 chrXIV:569609-570128 ( 55) CTAGCGGGATCGAACCGCTGATCCCCGCG 1 chrV:550883-551687 ( 56) CTAGCGGGATCGAACCGCTGATCCCCGCG 1 chrII:197148-197879 ( 70) CTAGCGGGATCGAACCGCTGATCCCCGCG 1 chrX:374176-374836 ( 56) CGATGGGGGTCGAACCCATAATCTTCTGA 1 chrVII:405109-405879 ( 63) CGATGGGGGTCGAACCCATAATCTTCTGA 1 chrXII:604935-605651 ( 63) AGGTGGGGATTGAACCCACGACGGTCGCG 1 chrVIII:388612-389244 ( 21) AGCTGGGAATTGAACCCAGGGCCTCTCGC 1 chrXV:487213-487741 ( 51) CAGTGAGGGTTGAACTCACGATCTTGCGA 1 chrXIV:632385-632893 ( 49) CAGTGAGGGTTGAACTCACGATCTTGCGA 1 chrXIV:102433-103040 ( 69) CAGTGAGGGTTGAACTCACGATCTTGCGA 1 chrXII:975689-976311 ( 39) CAGTGAGGGTTGAACTCACGATCTTGCGA 1 chrVII:730924-731395 ( 67) CAGTGAGGGTTGAACTCACGATCTTGCGA 1 chrVI:137059-138000 ( 13) CAGTGAGGGTTGAACTCACGATCTTGCGA 1 chrX:422491-423549 ( 5) AGGGGAGGTTCGAACTCTCGACCTTCAGA 1 chrX:197059-197631 ( 24) AGTCCGGAATCGAACCGGAGACCTCTCCC 1 chrVI:204695-205231 ( 17) AGTCCGGAATCGAACCGGAGACCTCTCCC 1 chrIV:410173-410724 ( 19) AGTCCGGAATCGAACCGGAGACCTCTCCC 1 chrXV:113439-114216 ( 63) CAATCGGATTTGAACCGATGATCTCCACA 1 chrX:58634-59546 ( 66) CAATCGGATTTGAACCGATGATCTCCACA 1 chrIX:174807-175369 ( 31) CAATCGGATTTGAACCGATGATCTCCACA 1 chrVII:876019-876845 ( 50) GTAGGGGGCTCGAACCCCTAACCTTATGA 1 chrV:135181-135752 ( 15) GTAGGGGGCTCGAACCCCTAACCTTATGA 1 chrIV:1200782-1202802 ( 46) GTAGGGGGCTCGAACCCCTAACCTTATGA 1 chrV:130713-131426 ( 69) TACCCGGATTCGAACCGGGGTTGTTCGGA 1 chrV:492068-492733 ( 8) CGCCAGGACTTGAACCTGGAATCTTCTGG 1 chrIV:1094965-1095755 ( 66) CTCTGTGGATCGAACACAGGACCTCCAGA 1 chrXII:875214-875642 ( 59) ATAGGGGGCTCGAACCCCTGACATTTCGG 1 chrXIII:837646-838280 ( 69) GGGGGCGAGTCGAACGCCCGATCTCAAGA 1 chrXIII:168563-169149 ( 43) GGGGGCGAGTCGAACGCCCGATCTCAAGA 1 chrXVI:435649-436218 ( 16) CACTCAGGATCGAACTAAGGACCAACAGA 1 chrVII:706925-707349 ( 27) CACTCAGGATCGAACTAAGGACCAACAGA 1 chrII:644960-645464 ( 42) TACGGGGAGTCGAACCCCGGTCTCCACGG 1 chrII:347352-347959 ( 47) ATGCGAGGTTCGAACTCGCGCGGACAACC 1 chrII:9335-9935 ( 47) ATGCGAGGTTCGAACTCGCGCGGACAACC 1 chrXII:167614-168278 ( 54) CTGCAGGACTCGAACCTGCGCGGGCAAAG 1 chrIV:980731-981312 ( 9) CTGCAGGACTCGAACCTGCGCGGGCAAAG 1 chrIV:437458-438226 ( 27) CTGCAGGACTCGAACCTGCGCGGGCAAAG 1 chrX:517587-518121 ( 15) CGCTCGGTTTCGATCCGAGGACATCAGGG 1 chrV:287984-288883 ( 66) CAGCAGGATTTGAACCAGCGCGGGCAGAG 1 chrXII:426940-427482 ( 8) GACGGGGAATTGAACCCCGATCTGGCACG 1 chrIV:568611-569351 ( 70) GACGGGGAATTGAACCCCGATCTGGCACG 1 chrXV:274465-275050 ( 32) AGACAGGATTCGAACCTGCGCAGGTAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MDVBSRGRATCGAACYSVBGAYCTYMHGV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 41472 bayes= 9.3835 E= 5.5e-195 -20 162 -47 -311 6 -1240 124 -41 -30 111 72 -252 -1240 130 42 -2 -153 124 136 -1240 6 -228 176 -411 -1240 -1240 247 -1240 47 -1240 158 -411 41 -11 18 -65 -1240 -1240 -1240 164 -1240 200 -1240 -20 -1240 -1240 247 -1240 164 -1240 -1240 -1240 162 -1240 -1240 -411 -1240 247 -1240 -1240 -411 176 -228 6 -252 136 111 -179 6 30 124 -411 -252 81 111 -41 -111 -1240 224 -1240 117 -47 -128 -211 -411 153 -70 14 -311 181 63 -252 -211 -47 -28 102 -179 124 -228 47 -2 136 -70 -153 -2 72 -28 -41 -179 72 176 -1240 53 63 53 -1240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MDVBSRGRATCGAACYSVBGAYCTYMHGV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 54 E= 5.5e-195 0.277778 0.555556 0.129630 0.037037 0.333333 0.000000 0.425926 0.240741 0.259259 0.388889 0.296296 0.055556 0.000000 0.444444 0.240741 0.314815 0.111111 0.425926 0.462963 0.000000 0.333333 0.037037 0.611111 0.018519 0.000000 0.000000 1.000000 0.000000 0.444444 0.000000 0.537037 0.018519 0.425926 0.166667 0.203704 0.203704 0.000000 0.000000 0.000000 1.000000 0.000000 0.722222 0.000000 0.277778 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.981481 0.000000 0.000000 0.018519 0.000000 1.000000 0.000000 0.000000 0.018519 0.611111 0.037037 0.333333 0.055556 0.462963 0.388889 0.092593 0.333333 0.222222 0.425926 0.018519 0.055556 0.314815 0.388889 0.240741 0.148148 0.000000 0.851852 0.000000 0.722222 0.129630 0.074074 0.074074 0.018519 0.518519 0.111111 0.351852 0.037037 0.629630 0.277778 0.055556 0.074074 0.129630 0.148148 0.648148 0.092593 0.425926 0.037037 0.444444 0.314815 0.462963 0.111111 0.111111 0.314815 0.296296 0.148148 0.240741 0.092593 0.296296 0.611111 0.000000 0.462963 0.277778 0.259259 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MDVBSRGRATCGAACYSVBGAYCTYMHGV MEME-1 regular expression -------------------------------------------------------------------------------- [CA][GAT][CGA][CTG][GC][GA]G[GA][AGT]T[CT]GAAC[CT][CG][GAC][GCT]GA[CT][CG]T[TC][CA][ACT][GC][ACG] -------------------------------------------------------------------------------- Time 329.10 secs. ******************************************************************************** ******************************************************************************** MOTIF GBCBMRKTGGKTADGGCGTCHGMYTDWH MEME-2 width = 28 sites = 39 llr = 754 E-value = 3.1e-117 ******************************************************************************** -------------------------------------------------------------------------------- Motif GBCBMRKTGGKTADGGCGTCHGMYTDWH MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1::2652:::::a41::2112:5::452 pos.-specific C :3a23::21:11:12:a:263236:113 probability G 95:315327831:37a:712182::221 matrix T :2:31:562268:2::::6241:4a334 bits 2.5 * * 2.2 * ** 2.0 * ** 1.7 * * * * ** * Relative 1.5 * * * * ** * * Entropy 1.2 * * ** * **** * ** (27.9 bits) 1.0 * * * ** ** **** * ** 0.7 *** * ****** **** * ** 0.5 *** ** ****** ****** **** 0.2 ******************** **** * 0.0 ---------------------------- Multilevel GGCTAGTTGGTTAAGGCGTCTGACTAAT consensus C GCAGC G G AC C CT TTC sequence T C T A G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBCBMRKTGGKTADGGCGTCHGMYTDWH MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------- chrXV:487213-487741 + 21 2.41e-12 AGACTCCATG GCCAAGTTGGTTAAGGCGTGCGACTGTT AATCGCAAGA chrXIV:632385-632893 + 19 2.41e-12 TGACTCCATG GCCAAGTTGGTTAAGGCGTGCGACTGTT AATCGCAAGA chrXIV:102433-103040 + 39 2.41e-12 AGACTCCATG GCCAAGTTGGTTAAGGCGTGCGACTGTT AATCGCAAGA chrXII:975689-976311 - 70 2.41e-12 ATG GCCAAGTTGGTTAAGGCGTGCGACTGTT AATCGCAAGA chrVII:730924-731395 + 37 2.41e-12 AGACTCCATG GCCAAGTTGGTTAAGGCGTGCGACTGTT AATCGCAAGA chrVI:137059-138000 - 44 2.41e-12 TGACTCCATG GCCAAGTTGGTTAAGGCGTGCGACTGTT AATCGCAAGA chrXV:663486-664280 - 16 3.41e-11 TGGTTTCGTG GTCTAGTCGGTTATGGCATCTGCTTAAC ACGCAGAACG chrXIII:586408-586922 - 58 3.41e-11 TGGTTTCGTG GTCTAGTCGGTTATGGCATCTGCTTAAC ACGCAGAACG chrXI:379491-379918 + 35 3.41e-11 AGGTTTCGTG GTCTAGTCGGTTATGGCATCTGCTTAAC ACGCAGAACG chrXI:307782-308543 - 69 3.41e-11 CGTG GTCTAGTCGGTTATGGCATCTGCTTAAC ACGCAGAACG chrVIII:85037-85602 - 66 3.41e-11 TTTCGTG GTCTAGTCGGTTATGGCATCTGCTTAAC ACGCAGAACG chrVII:823256-823681 + 73 3.41e-11 TGGTTTCGTG GTCTAGTCGGTTATGGCATCTGCTTAAC chrVII:412059-412608 - 48 3.41e-11 TGGTTTCGTG GTCTAGTCGGTTATGGCATCTGCTTAAC ACGCAGAACG chrV:469233-469665 + 67 3.41e-11 TGGTTTCGTG GTCTAGTCGGTTATGGCATCTGCTTAAC ACGCAG chrXV:113439-114216 + 33 1.33e-10 TAGCTTCTAT GGCCAAGTTGGTAAGGCGCCACACTAGT AATGTGGAGA chrX:617748-618157 + 26 1.68e-10 TGGGAGTTTG GCCGAGTGGTTTAAGGCGTCAGATTTAG GTGGATTTAA chrXV:339972-340743 - 29 4.96e-10 TGTTCCTCGT GGCCCAATGGTCACGGCGTCTGGCTACG AACCAGAAGA chrXII:373978-374748 + 50 4.96e-10 TGTTCCTCGT GGCCCAATGGTCACGGCGTCTGGCTACG AACCAGAAGA chrV:492068-492733 - 39 4.96e-10 TATTCCTCGT GGCCCAATGGTCACGGCGTCTGGCTACG AACCAGAAGA chrXV:854003-854435 - 55 7.43e-10 CAGGGCACAT GGCGCAGTTGGTAGCGCGCTTCCCTTGC AAGGAAGAGG chrXII:214722-215206 - 6 7.43e-10 TAGGGCACAT GGCGCAGTTGGTAGCGCGCTTCCCTTGC AAGGA chrII:197148-197879 + 40 7.43e-10 AGGTCTCTTG GCCCAGTTGGTTAAGGCACCGTGCTAAT AACGCGGGGA chrXI:83931-84463 + 70 8.20e-10 TGGAGGGTTG GCCGAGTGGTCTAAGGCGGCAGACTTAA GAT chrII:347352-347959 + 7 8.20e-10 GGGTTG GCCGAGTGGTCTAAGGCGGCAGACTTAA GATCTGTTGG chrII:9335-9935 + 7 8.20e-10 GGGTTG GCCGAGTGGTCTAAGGCGGCAGACTTAA GATCTGTTGG chrVII:876019-876845 + 20 9.96e-10 TAGCCTTGTT GGCGCAATCGGTAGCGCGTATGACTCTT AATCATAAGG chrV:135181-135752 - 46 9.96e-10 AAGCCTTGTT GGCGCAATCGGTAGCGCGTATGACTCTT AATCATAAGG chrIV:1200782-1202802 + 16 9.96e-10 TAGCCTTGTT GGCGCAATCGGTAGCGCGTATGACTCTT AATCATAAGG chrIII:227731-228201 + 34 1.75e-09 ATGGCACTAT GGCCGAGTGGTTAAGGCGAGAGACTCGA ATGGAATAAA chrVII:857240-857663 - 54 5.73e-09 TGGTTGTTTG GCCGAGCGGTCTAAGGCGCCTGATTCAA GAAATATCTT chrIV:980731-981312 - 49 7.83e-09 GAGGCAACTT GGCCGAGTGGTTAAGGCGAAAGATTAGA AATCTTTTGG chrXII:875214-875642 + 6 9.11e-09 TTGTT AGCTCAGTTGGTAGAGCGTTCGGCTTTT AAGCGCATTT chrIV:359302-359906 + 31 9.11e-09 CATCCTTGTT AGCTCAGTTGGTAGAGCGTTCGGCTTTT AAGCGCATTT chrX:197059-197631 - 55 9.82e-09 TAGGGCGTGT GGCGTAGTCGGTAGCGCGCTCCCTTAGC ATGGGAGAGG chrVI:204695-205231 - 48 9.82e-09 TCGGGCGTGT GGCGTAGTCGGTAGCGCGCTCCCTTAGC ATGGGAGAGG chrXIII:352060-352506 + 55 1.74e-08 AAGCGGATTT AGCTCAGTTGGGAGAGCGCCAGACTGAA GAAATACTTC chrVIII:237665-238173 - 35 1.74e-08 AAGCGGATTT AGCTCAGTTGGGAGAGCGCCAGACTGAA GAAAAAACTT chrII:326466-327200 - 46 9.07e-08 GGGTCCAATG GTCCAGTGGTTCAAGACGTCGCCTTTAC ACGGCGAAGA chrIV:884111-884637 + 45 1.12e-07 ATGCTCGTGT AGCTCAGTGGTTAGAGCTTCGTGCTTAT AGCAACATTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBCBMRKTGGKTADGGCGTCHGMYTDWH MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:487213-487741 2.4e-12 20_[+2]_52 chrXIV:632385-632893 2.4e-12 18_[+2]_54 chrXIV:102433-103040 2.4e-12 38_[+2]_34 chrXII:975689-976311 2.4e-12 69_[-2]_3 chrVII:730924-731395 2.4e-12 36_[+2]_36 chrVI:137059-138000 2.4e-12 43_[-2]_29 chrXV:663486-664280 3.4e-11 15_[-2]_57 chrXIII:586408-586922 3.4e-11 57_[-2]_15 chrXI:379491-379918 3.4e-11 34_[+2]_38 chrXI:307782-308543 3.4e-11 68_[-2]_4 chrVIII:85037-85602 3.4e-11 65_[-2]_7 chrVII:823256-823681 3.4e-11 72_[+2] chrVII:412059-412608 3.4e-11 47_[-2]_25 chrV:469233-469665 3.4e-11 66_[+2]_6 chrXV:113439-114216 1.3e-10 32_[+2]_40 chrX:617748-618157 1.7e-10 25_[+2]_47 chrXV:339972-340743 5e-10 28_[-2]_44 chrXII:373978-374748 5e-10 49_[+2]_23 chrV:492068-492733 5e-10 38_[-2]_34 chrXV:854003-854435 7.4e-10 54_[-2]_18 chrXII:214722-215206 7.4e-10 5_[-2]_67 chrII:197148-197879 7.4e-10 39_[+2]_33 chrXI:83931-84463 8.2e-10 69_[+2]_3 chrII:347352-347959 8.2e-10 6_[+2]_66 chrII:9335-9935 8.2e-10 6_[+2]_66 chrVII:876019-876845 1e-09 19_[+2]_53 chrV:135181-135752 1e-09 45_[-2]_27 chrIV:1200782-1202802 1e-09 15_[+2]_57 chrIII:227731-228201 1.7e-09 33_[+2]_39 chrVII:857240-857663 5.7e-09 53_[-2]_19 chrIV:980731-981312 7.8e-09 48_[-2]_24 chrXII:875214-875642 9.1e-09 5_[+2]_67 chrIV:359302-359906 9.1e-09 30_[+2]_42 chrX:197059-197631 9.8e-09 54_[-2]_18 chrVI:204695-205231 9.8e-09 47_[-2]_25 chrXIII:352060-352506 1.7e-08 54_[+2]_18 chrVIII:237665-238173 1.7e-08 34_[-2]_38 chrII:326466-327200 9.1e-08 45_[-2]_27 chrIV:884111-884637 1.1e-07 44_[+2]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBCBMRKTGGKTADGGCGTCHGMYTDWH MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GBCBMRKTGGKTADGGCGTCHGMYTDWH width=28 seqs=39 chrXV:487213-487741 ( 21) GCCAAGTTGGTTAAGGCGTGCGACTGTT 1 chrXIV:632385-632893 ( 19) GCCAAGTTGGTTAAGGCGTGCGACTGTT 1 chrXIV:102433-103040 ( 39) GCCAAGTTGGTTAAGGCGTGCGACTGTT 1 chrXII:975689-976311 ( 70) GCCAAGTTGGTTAAGGCGTGCGACTGTT 1 chrVII:730924-731395 ( 37) GCCAAGTTGGTTAAGGCGTGCGACTGTT 1 chrVI:137059-138000 ( 44) GCCAAGTTGGTTAAGGCGTGCGACTGTT 1 chrXV:663486-664280 ( 16) GTCTAGTCGGTTATGGCATCTGCTTAAC 1 chrXIII:586408-586922 ( 58) GTCTAGTCGGTTATGGCATCTGCTTAAC 1 chrXI:379491-379918 ( 35) GTCTAGTCGGTTATGGCATCTGCTTAAC 1 chrXI:307782-308543 ( 69) GTCTAGTCGGTTATGGCATCTGCTTAAC 1 chrVIII:85037-85602 ( 66) GTCTAGTCGGTTATGGCATCTGCTTAAC 1 chrVII:823256-823681 ( 73) GTCTAGTCGGTTATGGCATCTGCTTAAC 1 chrVII:412059-412608 ( 48) GTCTAGTCGGTTATGGCATCTGCTTAAC 1 chrV:469233-469665 ( 67) GTCTAGTCGGTTATGGCATCTGCTTAAC 1 chrXV:113439-114216 ( 33) GGCCAAGTTGGTAAGGCGCCACACTAGT 1 chrX:617748-618157 ( 26) GCCGAGTGGTTTAAGGCGTCAGATTTAG 1 chrXV:339972-340743 ( 29) GGCCCAATGGTCACGGCGTCTGGCTACG 1 chrXII:373978-374748 ( 50) GGCCCAATGGTCACGGCGTCTGGCTACG 1 chrV:492068-492733 ( 39) GGCCCAATGGTCACGGCGTCTGGCTACG 1 chrXV:854003-854435 ( 55) GGCGCAGTTGGTAGCGCGCTTCCCTTGC 1 chrXII:214722-215206 ( 6) GGCGCAGTTGGTAGCGCGCTTCCCTTGC 1 chrII:197148-197879 ( 40) GCCCAGTTGGTTAAGGCACCGTGCTAAT 1 chrXI:83931-84463 ( 70) GCCGAGTGGTCTAAGGCGGCAGACTTAA 1 chrII:347352-347959 ( 7) GCCGAGTGGTCTAAGGCGGCAGACTTAA 1 chrII:9335-9935 ( 7) GCCGAGTGGTCTAAGGCGGCAGACTTAA 1 chrVII:876019-876845 ( 20) GGCGCAATCGGTAGCGCGTATGACTCTT 1 chrV:135181-135752 ( 46) GGCGCAATCGGTAGCGCGTATGACTCTT 1 chrIV:1200782-1202802 ( 16) GGCGCAATCGGTAGCGCGTATGACTCTT 1 chrIII:227731-228201 ( 34) GGCCGAGTGGTTAAGGCGAGAGACTCGA 1 chrVII:857240-857663 ( 54) GCCGAGCGGTCTAAGGCGCCTGATTCAA 1 chrIV:980731-981312 ( 49) GGCCGAGTGGTTAAGGCGAAAGATTAGA 1 chrXII:875214-875642 ( 6) AGCTCAGTTGGTAGAGCGTTCGGCTTTT 1 chrIV:359302-359906 ( 31) AGCTCAGTTGGTAGAGCGTTCGGCTTTT 1 chrX:197059-197631 ( 55) GGCGTAGTCGGTAGCGCGCTCCCTTAGC 1 chrVI:204695-205231 ( 48) GGCGTAGTCGGTAGCGCGCTCCCTTAGC 1 chrXIII:352060-352506 ( 55) AGCTCAGTTGGGAGAGCGCCAGACTGAA 1 chrVIII:237665-238173 ( 35) AGCTCAGTTGGGAGAGCGCCAGACTGAA 1 chrII:326466-327200 ( 46) GTCCAGTGGTTCAAGACGTCGCCTTTAC 1 chrIV:884111-884637 ( 45) AGCTCAGTGGTTAGAGCTTCGTGCTTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBCBMRKTGGKTADGGCGTCHGMYTDWH MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 42048 bayes= 10.9945 E= 3.1e-117 -132 -1193 227 -1193 -1193 77 136 -47 -1193 247 -1193 -1193 -106 19 77 6 82 89 -181 -264 53 -1193 158 -1193 -106 -281 77 68 -1193 19 -23 100 -1193 -49 194 -83 -1193 -1193 223 -106 -1193 -81 77 88 -1193 -81 -181 140 164 -1193 -1193 -1193 36 -123 77 -64 -132 0 194 -1193 -364 -1193 244 -1193 -1193 247 -1193 -1193 -47 -1193 205 -364 -264 36 -123 100 -164 165 0 -106 -47 51 -123 45 -1193 -23 214 -264 61 89 0 -1193 -1193 183 -1193 17 -1193 -1193 -1193 164 36 -49 19 -32 53 -123 0 -18 -64 89 -81 17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBCBMRKTGGKTADGGCGTCHGMYTDWH MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 39 E= 3.1e-117 0.128205 0.000000 0.871795 0.000000 0.000000 0.307692 0.461538 0.230769 0.000000 1.000000 0.000000 0.000000 0.153846 0.205128 0.307692 0.333333 0.564103 0.333333 0.051282 0.051282 0.461538 0.000000 0.538462 0.000000 0.153846 0.025641 0.307692 0.512821 0.000000 0.205128 0.153846 0.641026 0.000000 0.128205 0.692308 0.179487 0.000000 0.000000 0.846154 0.153846 0.000000 0.102564 0.307692 0.589744 0.000000 0.102564 0.051282 0.846154 1.000000 0.000000 0.000000 0.000000 0.410256 0.076923 0.307692 0.205128 0.128205 0.179487 0.692308 0.000000 0.025641 0.000000 0.974359 0.000000 0.000000 1.000000 0.000000 0.000000 0.230769 0.000000 0.743590 0.025641 0.051282 0.230769 0.076923 0.641026 0.102564 0.564103 0.179487 0.153846 0.230769 0.256410 0.076923 0.435897 0.000000 0.153846 0.794872 0.051282 0.487179 0.333333 0.179487 0.000000 0.000000 0.641026 0.000000 0.358974 0.000000 0.000000 0.000000 1.000000 0.410256 0.128205 0.205128 0.256410 0.461538 0.076923 0.179487 0.282051 0.205128 0.333333 0.102564 0.358974 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBCBMRKTGGKTADGGCGTCHGMYTDWH MEME-2 regular expression -------------------------------------------------------------------------------- G[GCT]C[TGC][AC][GA][TG][TC]GG[TG]TA[AGT]GGC[GA][TC]C[TCA]G[AC][CT]T[ATG][AT][TCA] -------------------------------------------------------------------------------- Time 633.44 secs. ******************************************************************************** ******************************************************************************** MOTIF RAAAAAARAAAAAARAWDR MEME-3 width = 19 sites = 100 llr = 1067 E-value = 1.8e-069 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAAAAAARAAAAAARAWDR MEME-3 Description -------------------------------------------------------------------------------- Simplified A 499988768a778868535 pos.-specific C :::::1:1::::::::11: probability G 6:21::331:222:31:34 matrix T :1::211:1:11:211441 bits 2.5 2.2 2.0 1.7 Relative 1.5 * Entropy 1.2 *** * (15.4 bits) 1.0 ***** * ** 0.7 *********** ** * 0.5 **************** * 0.2 ***************** * 0.0 ------------------- Multilevel GAAAAAAAAAAAAAAAATA consensus A GG G G TAG sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAAARAAAAAARAWDR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------- chrX:58634-59546 + 14 6.97e-09 TCAAGAGCGT GAAAAAAAAAAAAAAAAAA AAATTAATTG chrXII:167614-168278 + 21 9.19e-09 CTGCTTCAGA GAAAAAAAAAAGAAAAAGA AAAAATAACG chrXVI:188525-189282 - 74 1.18e-08 AGAAGAAA AAAAAAAGAAAAAAAAAGA GACCTAAACG chrXII:48586-49122 + 59 1.18e-08 GCCAAAAAAA AAAAAAAAAAAAAAAAAGA AAAAAAGAAA chrVIII:504028-504658 + 27 1.18e-08 CACATTTCAT GAAAAAAAAAGAAAAATTG TATGTATAAT chrVII:930364-931560 + 21 3.09e-08 ACTATTCAGG GAAAAAAGAAAAGAAAAAA ATGCGCAAGC chrIV:525073-525510 - 15 3.09e-08 CAAGCTAAAA AAAAAAGAAAAAAAAAAAG AAAAGCGCCG chrXII:84201-84833 - 45 5.27e-08 TGCACACATA AAAAAAAAAAAGAAAATGA CAATGTTCAA chrI:180920-181559 - 63 5.27e-08 AGTATAGGAG GAAAAAGAAAAAATAATGG TTGCTAAGAG chrVII:399150-401972 - 37 6.27e-08 AAAATAAAAA AAAAAAAAAAAAAAAACTA AAAGGTTGAG chrVII:255176-255716 - 77 8.76e-08 TCGCT GAGAAAGGAAAGAAAAATG GCATGATATG chrXV:967417-968429 - 67 1.03e-07 CTTCTGACGT GAAAAAAAAAAAAAAATTT CATCCATAAT chrII:476875-477795 + 47 1.03e-07 TAGGCTCACC AAAAAAGAAAGAAAAAATA CGAGTTGCTG chrXIV:632385-632893 - 81 1.42e-07 T GAAATAAGAAAAAAAACGA CCCCAGTGAG chrXII:348192-349253 + 64 1.93e-07 TGATCCCTTC AAAAAAAAAAAAAAAGAGA GTTGGTTACC chrXVI:819261-820003 - 81 2.24e-07 T GTAAAAAAAAAAAAAAATA GAAAATAGTA chrXIV:567841-568722 + 78 2.24e-07 TTTAATGCTG GAGATAAAAAAAAAAAATG CATT chrXIII:168563-169149 - 78 2.24e-07 TGGA GAAAAAGGGAAAAAAAATA TCTCCCGGGG chrXV:677760-679383 - 21 2.60e-07 GTAAATGTAC AAAAAAGGAAGAAAGACGA GAATTTCAAA chrXV:438357-439168 - 61 3.48e-07 TATAGTGGGG GAAAAAGAAAAGAAGAGGA TGGTACCCGA chrX:396552-397325 + 1 3.48e-07 . AAAGAAAGAAAAAAGACTG AATGAGAACT chrIX:197332-198048 - 25 3.99e-07 AGTCCCTAAA AAAAAAAGAATAAAAAATA ACTCCGAAGC chrXVI:559669-560557 - 70 5.23e-07 CTTGCAAGTT GAAGAAAGAAAAATAAATA GAGCCAATTA chrXIII:20-196 + 54 5.23e-07 ACCGAAATTA AAAAAAAAAAATGAAAATG AAACCCTGTT chrXII:1028172-1028561 - 19 5.23e-07 TTAAGACAAG GAAGAAAGAAGGAAAAAAG GTAGGACATG chrXII:817778-820426 - 11 5.23e-07 TGATTTTCAG AAAAAAAAAAAAGAAGAGA AAGGATTAGT chrV:85663-86920 - 15 6.76e-07 TATGCTTTAG GAGAACGAAAAAAAAATTG CAAAGAAAAA chrVIII:214133-214357 - 61 7.67e-07 CAGATTTCGA ATAAAAAAAAAAAAAAAAG CTATTCATGG chrIX:248627-249300 - 27 7.67e-07 AGTAAGCGAT AAAAAAAAAATAAAAATAA AAAAATAACG chrXII:734703-735150 - 44 8.70e-07 AACGAGGATT AAAAAAAAAAAAAAATTAA GTAATAAGTG chrXII:6-278 + 43 8.70e-07 GACCGAAATT AAAAAAAAAATGAAAATGA AACCCTGTTC chrVII:608715-609922 - 3 1.25e-06 AAAACGCTGT GAAGAATAAAAAAAAATTG TA chrXIII:145768-146377 - 4 1.41e-06 ATTATTTTAT GAAAAAGCAAAAAAGGTAA ACA chrII:44962-45323 + 31 1.41e-06 TCAAAATTAG GAAAAAGAAATGAAGAACG ATGAGCCAAA chrXII:604935-605651 + 40 1.58e-06 AACTTTTTTT AAAAAAAAAAGAGAAAGTG CTCGAGGTGG chrIX:232737-233005 + 3 1.58e-06 CC GAAAAAGGAATAAAATATG TACAGATGTA chrXIII:807653-808588 - 80 1.78e-06 AA GAGAAAGGTAAGAAAAAGA AACCAACCTC chrVIII:16180-18375 - 25 1.78e-06 TTTACGGAGA GAAATAAAAATAAAAATAA CTATGATTTC chrVII:228484-228804 + 66 1.78e-06 ACAGTCTTAC AAAATAAAAAAGAAGAACG ACACCAAAAT chrIX:210499-211273 + 49 1.78e-06 TTGCTGCAAT GAGAATGGAAAAAAAATTA AAAAAACTCA chrXIV:444457-444851 - 52 1.99e-06 AAAGGCACAG AAAATAACAAAAAAAAAAA AAAAGTCAAT chrX:390459-392057 + 39 1.99e-06 GAAAACAAAA AAAAAGGGAAGAAAAAAGA TATCACCACC chrII:415495-415922 + 38 1.99e-06 GCATGGGTGT AAAAAAGGAAATGAGACGA ACTTGTAATA chrXIII:761341-764687 + 17 2.23e-06 TTGAGAGAAT GAAAAAGGAAGAAAAGAGT GATAATTTGA chrVIII:85037-85602 + 1 2.23e-06 . AAAGAAAAAAAAAAAATTC AAAAAAAATT chrV:151010-153047 - 37 2.49e-06 AATAAATATT GAAATAGAAAATGAAATTA AATTTATATT chrIII:142143-142981 + 52 2.49e-06 TAATTCTTAT GAAAAAAAAAATGTGAAAG AGAGTAGAAA chrVII:738442-739480 - 4 2.78e-06 TTAGAACTCT AAAAAAGGAAATAAGAGTG CTA chrVII:363953-364479 + 19 2.78e-06 GCGCATGTGA AAAAAAAGAGAAGAAAATA AAGCCAATTA chrXIV:725768-726425 + 71 3.10e-06 TGGCCCCGAC AAAATAAAAAAAAATACTG AAGGATGCGA chrXIV:715479-716663 - 42 3.10e-06 TAAAATCAAG GAAAAAACAAGTGAGATTG CAATAAGCAA chrVIII:386270-386953 - 70 3.10e-06 AAGATCATGA GAAAAAAACAAAATAAAGA AATTAGGAAA chrIV:1488920-1489964 - 40 3.45e-06 TGAAGGGACC AAAGAAGGAAAAAAAATAT GTTGGAAGGG chrXV:382861-383483 + 6 3.84e-06 TGCGA AAAAAAAAAAGCGAGAATA TCTAAGCTCC chrIV:433956-435172 - 56 3.84e-06 ATGACAACGC ATAAAAGGAAAGAAGATAA AATAATAACA chrXVI:699938-700700 + 67 4.26e-06 TAAAGGTTTG GAAAAGAAAAAAGAGACCG CCTCGTTTCT chrVII:544316-546151 - 82 4.26e-06 . AAAATATAAAAAAAGATTG TTAGGCTCCT chrXI:67794-68390 + 57 4.71e-06 TCAGTGGCAA AAAAAAAATAAAAATATAG AAAATAACTA chrVIII:145959-146478 + 57 5.76e-06 TACTGTTATG GTAATAACAAAAAAGATTG GACGAGTCCG chrXIII:91647-92121 + 77 6.35e-06 CAAATATACC GAAAAAAGAAACAAGACAT TTTTT chrXV:904314-905344 + 25 7.00e-06 TGCGAACACC GAAATCAAAAAAAAAAATT GGGCTTGTAA chrXIII:550613-553360 + 74 7.00e-06 GTGAGATCAA GAGAAAAAAAATGAATATG TCAGCCAA chrIV:1301787-1302575 - 82 7.00e-06 . GTAAAAAAAAAGAATATAA CGTGAAGTAA chrIV:448679-450148 + 7 7.71e-06 ATTCTT ATAAAAAAGAAAAAAATTA CTGCAAAACA chrII:220437-221165 - 55 7.71e-06 TGTATTACAA AAAAAAAGAAATGAATTTA TCAAAGTAAC chrXIII:267622-268559 - 13 8.48e-06 TTTCAAATAT TAAAAAAGAAAAATAAATA TTTTGTTAGG chrX:197059-197631 + 2 8.48e-06 T GAGAACAAAAAGAAATTGG ACGAGTCCGG chrII:87962-88636 - 5 1.02e-05 GTTAAAGTCA GAGAAAAAAAGCAATATTG TTAT chrXV:1003355-1005508 - 20 1.34e-05 AAAAGTACAA GAAAAGGAGAAGAAGAAAA ATTTTTGACT chrIII:81910-82822 + 49 1.34e-05 ACTATTTTTT GAAAAAAATAAAATGGTAA TTTATTAAAT chrXI:46278-47039 + 32 1.46e-05 ATCATTGTTT GAAAAAAGAGAGGATATTA CTAGTAGGTA chrVI:226405-226917 + 61 1.46e-05 TTTTTTGTTA GAGAAAAAAAGAGATAAGC CCTGTAGGGG chrXIII:504634-505356 - 58 1.60e-05 AGGAATACGC GAGAAAAAAATAATGGTTG CTAAGAGATT chrXIV:602190-602620 - 29 1.74e-05 CACATTGCGA GAAATGTAAAAAAAGAATG GTCTCTAGCG chrX:172473-173131 - 22 1.74e-05 TGAATTGAAA GAAAAAGGAAACATTATAA TCCGTTAGCA chrXIV:499175-499772 - 49 2.07e-05 AAATTCACTA GAAGAAAAAAAAAAATTCC CAGTTAATAG chrVIII:475339-475926 + 11 2.07e-05 TGAATGTTAC GTAAACAGGAAAAAAAATA TGTCGAAGGA chrVIII:74874-75882 + 46 2.07e-05 AAACTCCTAC AAGAAAGCAAGTAAAATAA ACAAAAAGGT chrVII:440273-441934 - 66 2.07e-05 GGTATAGGTT AAAGATAAAATAAAGAAGA CAGGAAGCAA chrIX:370143-370697 + 22 2.07e-05 ACATAAGATC GAAGTAGAAAAAATATAGA TTATAATCCG chrVIII:296860-297250 - 76 2.25e-05 CTGCTA GCAAAAAGTAAAGAAATGA GAGCATGCTG chrVII:919315-920217 + 57 2.25e-05 AAGAAGCCGC GAAAAAAAAAAGAACACGC TAAACGATTC chrXV:709966-710803 + 42 2.44e-05 AAAAGTTTTG GAGAAAAGTAGGATGATAG GATTTGAAGG chrIV:358005-358499 - 21 2.65e-05 ATTATCTGAC AAGGAAACAAAAGTAATGA CAGTAAATTG chrXIII:499014-500400 + 22 2.87e-05 TCTGTTTGGA GAGAAAGCCAAAGAGAAAA CTTCATCTTG chrVIII:103855-104347 - 43 3.36e-05 GTCTCAAGAA AAAAAAGCAAGAAAGTTTT ACTGTGTGGT chrXIII:652020-652969 - 82 4.23e-05 . AAAAAAAAAAAGGTATGTG CGTGAAGAGA chrXII:805317-806120 + 13 4.23e-05 ATTTCTCAAA GAAAAAAGAAGTAATGCCG AACTGAGAGT chrXII:780765-781942 - 74 4.23e-05 AGTACGAC AAAATATCAAGGAAAAATG GCTAGAGAAA chrIV:490412-491988 - 5 4.23e-05 TTGAAATCGT GAAAAAGATGAAAAGAAAT GTTT chrXIII:320908-321330 + 65 4.56e-05 TAGTTAGCCA AAAAAATAAAAAATGGACG AGTCCGGAAT chrX:90023-90419 + 42 4.91e-05 GAAAAAGAAG GAAGACGGAAAAAGGACGG CATCCTTTTC chrXII:673292-674509 - 34 5.69e-05 AGATGCACCA AAAAAAAAGAAAGTTACAG TAAGAGACTT chrIX:1-208 + 79 5.69e-05 CTTTCTGACC GAAATTAAAAAAAATGAAA ATG chrXII:687615-688886 - 69 6.56e-05 GTGAAACATA TAAAATGGAAGAAAGATAA TTACAAAATT chrXII:241344-242029 - 35 6.56e-05 TTATGCATGT AAAATAAGTAATAAAATTT AAGTTTAGGG chrXV:832317-832818 - 39 7.55e-05 AGTTCTCCCT AAGAATAAAATAGTAAAGG AAGCTATTGC chrVII:555099-558427 - 25 8.65e-05 AAACTAAATT GAAATTGATAAAAAATATA CATAAAAGAA chrXII:522120-523508 + 57 9.25e-05 ATACTTGTAT GAAGACAGAATAGTGAACG AAAGACATGC chrX:745245-745734 + 66 9.25e-05 GTGGATGGTA GTAGTAAGTAGAGAGATGG ATGGTGGTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAAARAAAAAARAWDR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:58634-59546 7e-09 13_[+3]_68 chrXII:167614-168278 9.2e-09 20_[+3]_61 chrXVI:188525-189282 1.2e-08 73_[-3]_8 chrXII:48586-49122 1.2e-08 58_[+3]_23 chrVIII:504028-504658 1.2e-08 26_[+3]_55 chrVII:930364-931560 3.1e-08 20_[+3]_61 chrIV:525073-525510 3.1e-08 14_[-3]_67 chrXII:84201-84833 5.3e-08 44_[-3]_37 chrI:180920-181559 5.3e-08 62_[-3]_19 chrVII:399150-401972 6.3e-08 36_[-3]_45 chrVII:255176-255716 8.8e-08 76_[-3]_5 chrXV:967417-968429 1e-07 66_[-3]_15 chrII:476875-477795 1e-07 46_[+3]_35 chrXIV:632385-632893 1.4e-07 80_[-3]_1 chrXII:348192-349253 1.9e-07 63_[+3]_18 chrXVI:819261-820003 2.2e-07 80_[-3]_1 chrXIV:567841-568722 2.2e-07 77_[+3]_4 chrXIII:168563-169149 2.2e-07 77_[-3]_4 chrXV:677760-679383 2.6e-07 20_[-3]_61 chrXV:438357-439168 3.5e-07 60_[-3]_21 chrX:396552-397325 3.5e-07 [+3]_81 chrIX:197332-198048 4e-07 24_[-3]_57 chrXVI:559669-560557 5.2e-07 69_[-3]_12 chrXIII:20-196 5.2e-07 53_[+3]_28 chrXII:1028172-1028561 5.2e-07 18_[-3]_63 chrXII:817778-820426 5.2e-07 10_[-3]_71 chrV:85663-86920 6.8e-07 14_[-3]_67 chrVIII:214133-214357 7.7e-07 60_[-3]_21 chrIX:248627-249300 7.7e-07 26_[-3]_55 chrXII:734703-735150 8.7e-07 43_[-3]_38 chrXII:6-278 8.7e-07 42_[+3]_39 chrVII:608715-609922 1.2e-06 2_[-3]_79 chrXIII:145768-146377 1.4e-06 3_[-3]_78 chrII:44962-45323 1.4e-06 30_[+3]_51 chrXII:604935-605651 1.6e-06 39_[+3]_42 chrIX:232737-233005 1.6e-06 2_[+3]_79 chrXIII:807653-808588 1.8e-06 79_[-3]_2 chrVIII:16180-18375 1.8e-06 24_[-3]_57 chrVII:228484-228804 1.8e-06 65_[+3]_16 chrIX:210499-211273 1.8e-06 48_[+3]_33 chrXIV:444457-444851 2e-06 51_[-3]_30 chrX:390459-392057 2e-06 38_[+3]_43 chrII:415495-415922 2e-06 37_[+3]_44 chrXIII:761341-764687 2.2e-06 16_[+3]_65 chrVIII:85037-85602 2.2e-06 [+3]_81 chrV:151010-153047 2.5e-06 36_[-3]_45 chrIII:142143-142981 2.5e-06 51_[+3]_30 chrVII:738442-739480 2.8e-06 3_[-3]_78 chrVII:363953-364479 2.8e-06 18_[+3]_63 chrXIV:725768-726425 3.1e-06 70_[+3]_11 chrXIV:715479-716663 3.1e-06 41_[-3]_40 chrVIII:386270-386953 3.1e-06 69_[-3]_12 chrIV:1488920-1489964 3.5e-06 39_[-3]_42 chrXV:382861-383483 3.8e-06 5_[+3]_76 chrIV:433956-435172 3.8e-06 55_[-3]_26 chrXVI:699938-700700 4.3e-06 66_[+3]_15 chrVII:544316-546151 4.3e-06 81_[-3] chrXI:67794-68390 4.7e-06 56_[+3]_25 chrVIII:145959-146478 5.8e-06 56_[+3]_25 chrXIII:91647-92121 6.4e-06 76_[+3]_5 chrXV:904314-905344 7e-06 24_[+3]_57 chrXIII:550613-553360 7e-06 73_[+3]_8 chrIV:1301787-1302575 7e-06 81_[-3] chrIV:448679-450148 7.7e-06 6_[+3]_75 chrII:220437-221165 7.7e-06 54_[-3]_27 chrXIII:267622-268559 8.5e-06 12_[-3]_69 chrX:197059-197631 8.5e-06 1_[+3]_80 chrII:87962-88636 1e-05 4_[-3]_77 chrXV:1003355-1005508 1.3e-05 19_[-3]_62 chrIII:81910-82822 1.3e-05 48_[+3]_33 chrXI:46278-47039 1.5e-05 31_[+3]_50 chrVI:226405-226917 1.5e-05 60_[+3]_21 chrXIII:504634-505356 1.6e-05 57_[-3]_24 chrXIV:602190-602620 1.7e-05 28_[-3]_53 chrX:172473-173131 1.7e-05 21_[-3]_60 chrXIV:499175-499772 2.1e-05 48_[-3]_33 chrVIII:475339-475926 2.1e-05 10_[+3]_71 chrVIII:74874-75882 2.1e-05 45_[+3]_36 chrVII:440273-441934 2.1e-05 65_[-3]_16 chrIX:370143-370697 2.1e-05 21_[+3]_60 chrVIII:296860-297250 2.2e-05 75_[-3]_6 chrVII:919315-920217 2.2e-05 56_[+3]_25 chrXV:709966-710803 2.4e-05 41_[+3]_40 chrIV:358005-358499 2.6e-05 20_[-3]_61 chrXIII:499014-500400 2.9e-05 21_[+3]_60 chrVIII:103855-104347 3.4e-05 42_[-3]_39 chrXIII:652020-652969 4.2e-05 81_[-3] chrXII:805317-806120 4.2e-05 12_[+3]_69 chrXII:780765-781942 4.2e-05 73_[-3]_8 chrIV:490412-491988 4.2e-05 4_[-3]_77 chrXIII:320908-321330 4.6e-05 64_[+3]_17 chrX:90023-90419 4.9e-05 41_[+3]_40 chrXII:673292-674509 5.7e-05 33_[-3]_48 chrIX:1-208 5.7e-05 78_[+3]_3 chrXII:687615-688886 6.6e-05 68_[-3]_13 chrXII:241344-242029 6.6e-05 34_[-3]_47 chrXV:832317-832818 7.5e-05 38_[-3]_43 chrVII:555099-558427 8.7e-05 24_[-3]_57 chrXII:522120-523508 9.3e-05 56_[+3]_25 chrX:745245-745734 9.3e-05 65_[+3]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAAARAAAAAARAWDR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAAAAAARAAAAAARAWDR width=19 seqs=100 chrX:58634-59546 ( 14) GAAAAAAAAAAAAAAAAAA 1 chrXII:167614-168278 ( 21) GAAAAAAAAAAGAAAAAGA 1 chrXVI:188525-189282 ( 74) AAAAAAAGAAAAAAAAAGA 1 chrXII:48586-49122 ( 59) AAAAAAAAAAAAAAAAAGA 1 chrVIII:504028-504658 ( 27) GAAAAAAAAAGAAAAATTG 1 chrVII:930364-931560 ( 21) GAAAAAAGAAAAGAAAAAA 1 chrIV:525073-525510 ( 15) AAAAAAGAAAAAAAAAAAG 1 chrXII:84201-84833 ( 45) AAAAAAAAAAAGAAAATGA 1 chrI:180920-181559 ( 63) GAAAAAGAAAAAATAATGG 1 chrVII:399150-401972 ( 37) AAAAAAAAAAAAAAAACTA 1 chrVII:255176-255716 ( 77) GAGAAAGGAAAGAAAAATG 1 chrXV:967417-968429 ( 67) GAAAAAAAAAAAAAAATTT 1 chrII:476875-477795 ( 47) AAAAAAGAAAGAAAAAATA 1 chrXIV:632385-632893 ( 81) GAAATAAGAAAAAAAACGA 1 chrXII:348192-349253 ( 64) AAAAAAAAAAAAAAAGAGA 1 chrXVI:819261-820003 ( 81) GTAAAAAAAAAAAAAAATA 1 chrXIV:567841-568722 ( 78) GAGATAAAAAAAAAAAATG 1 chrXIII:168563-169149 ( 78) GAAAAAGGGAAAAAAAATA 1 chrXV:677760-679383 ( 21) AAAAAAGGAAGAAAGACGA 1 chrXV:438357-439168 ( 61) GAAAAAGAAAAGAAGAGGA 1 chrX:396552-397325 ( 1) AAAGAAAGAAAAAAGACTG 1 chrIX:197332-198048 ( 25) AAAAAAAGAATAAAAAATA 1 chrXVI:559669-560557 ( 70) GAAGAAAGAAAAATAAATA 1 chrXIII:20-196 ( 54) AAAAAAAAAAATGAAAATG 1 chrXII:1028172-1028561 ( 19) GAAGAAAGAAGGAAAAAAG 1 chrXII:817778-820426 ( 11) AAAAAAAAAAAAGAAGAGA 1 chrV:85663-86920 ( 15) GAGAACGAAAAAAAAATTG 1 chrVIII:214133-214357 ( 61) ATAAAAAAAAAAAAAAAAG 1 chrIX:248627-249300 ( 27) AAAAAAAAAATAAAAATAA 1 chrXII:734703-735150 ( 44) AAAAAAAAAAAAAAATTAA 1 chrXII:6-278 ( 43) AAAAAAAAAATGAAAATGA 1 chrVII:608715-609922 ( 3) GAAGAATAAAAAAAAATTG 1 chrXIII:145768-146377 ( 4) GAAAAAGCAAAAAAGGTAA 1 chrII:44962-45323 ( 31) GAAAAAGAAATGAAGAACG 1 chrXII:604935-605651 ( 40) AAAAAAAAAAGAGAAAGTG 1 chrIX:232737-233005 ( 3) GAAAAAGGAATAAAATATG 1 chrXIII:807653-808588 ( 80) GAGAAAGGTAAGAAAAAGA 1 chrVIII:16180-18375 ( 25) GAAATAAAAATAAAAATAA 1 chrVII:228484-228804 ( 66) AAAATAAAAAAGAAGAACG 1 chrIX:210499-211273 ( 49) GAGAATGGAAAAAAAATTA 1 chrXIV:444457-444851 ( 52) AAAATAACAAAAAAAAAAA 1 chrX:390459-392057 ( 39) AAAAAGGGAAGAAAAAAGA 1 chrII:415495-415922 ( 38) AAAAAAGGAAATGAGACGA 1 chrXIII:761341-764687 ( 17) GAAAAAGGAAGAAAAGAGT 1 chrVIII:85037-85602 ( 1) AAAGAAAAAAAAAAAATTC 1 chrV:151010-153047 ( 37) GAAATAGAAAATGAAATTA 1 chrIII:142143-142981 ( 52) GAAAAAAAAAATGTGAAAG 1 chrVII:738442-739480 ( 4) AAAAAAGGAAATAAGAGTG 1 chrVII:363953-364479 ( 19) AAAAAAAGAGAAGAAAATA 1 chrXIV:725768-726425 ( 71) AAAATAAAAAAAAATACTG 1 chrXIV:715479-716663 ( 42) GAAAAAACAAGTGAGATTG 1 chrVIII:386270-386953 ( 70) GAAAAAAACAAAATAAAGA 1 chrIV:1488920-1489964 ( 40) AAAGAAGGAAAAAAAATAT 1 chrXV:382861-383483 ( 6) AAAAAAAAAAGCGAGAATA 1 chrIV:433956-435172 ( 56) ATAAAAGGAAAGAAGATAA 1 chrXVI:699938-700700 ( 67) GAAAAGAAAAAAGAGACCG 1 chrVII:544316-546151 ( 82) AAAATATAAAAAAAGATTG 1 chrXI:67794-68390 ( 57) AAAAAAAATAAAAATATAG 1 chrVIII:145959-146478 ( 57) GTAATAACAAAAAAGATTG 1 chrXIII:91647-92121 ( 77) GAAAAAAGAAACAAGACAT 1 chrXV:904314-905344 ( 25) GAAATCAAAAAAAAAAATT 1 chrXIII:550613-553360 ( 74) GAGAAAAAAAATGAATATG 1 chrIV:1301787-1302575 ( 82) GTAAAAAAAAAGAATATAA 1 chrIV:448679-450148 ( 7) ATAAAAAAGAAAAAAATTA 1 chrII:220437-221165 ( 55) AAAAAAAGAAATGAATTTA 1 chrXIII:267622-268559 ( 13) TAAAAAAGAAAAATAAATA 1 chrX:197059-197631 ( 2) GAGAACAAAAAGAAATTGG 1 chrII:87962-88636 ( 5) GAGAAAAAAAGCAATATTG 1 chrXV:1003355-1005508 ( 20) GAAAAGGAGAAGAAGAAAA 1 chrIII:81910-82822 ( 49) GAAAAAAATAAAATGGTAA 1 chrXI:46278-47039 ( 32) GAAAAAAGAGAGGATATTA 1 chrVI:226405-226917 ( 61) GAGAAAAAAAGAGATAAGC 1 chrXIII:504634-505356 ( 58) GAGAAAAAAATAATGGTTG 1 chrXIV:602190-602620 ( 29) GAAATGTAAAAAAAGAATG 1 chrX:172473-173131 ( 22) GAAAAAGGAAACATTATAA 1 chrXIV:499175-499772 ( 49) GAAGAAAAAAAAAAATTCC 1 chrVIII:475339-475926 ( 11) GTAAACAGGAAAAAAAATA 1 chrVIII:74874-75882 ( 46) AAGAAAGCAAGTAAAATAA 1 chrVII:440273-441934 ( 66) AAAGATAAAATAAAGAAGA 1 chrIX:370143-370697 ( 22) GAAGTAGAAAAAATATAGA 1 chrVIII:296860-297250 ( 76) GCAAAAAGTAAAGAAATGA 1 chrVII:919315-920217 ( 57) GAAAAAAAAAAGAACACGC 1 chrXV:709966-710803 ( 42) GAGAAAAGTAGGATGATAG 1 chrIV:358005-358499 ( 21) AAGGAAACAAAAGTAATGA 1 chrXIII:499014-500400 ( 22) GAGAAAGCCAAAGAGAAAA 1 chrVIII:103855-104347 ( 43) AAAAAAGCAAGAAAGTTTT 1 chrXIII:652020-652969 ( 82) AAAAAAAAAAAGGTATGTG 1 chrXII:805317-806120 ( 13) GAAAAAAGAAGTAATGCCG 1 chrXII:780765-781942 ( 74) AAAATATCAAGGAAAAATG 1 chrIV:490412-491988 ( 5) GAAAAAGATGAAAAGAAAT 1 chrXIII:320908-321330 ( 65) AAAAAATAAAAAATGGACG 1 chrX:90023-90419 ( 42) GAAGACGGAAAAAGGACGG 1 chrXII:673292-674509 ( 34) AAAAAAAAGAAAGTTACAG 1 chrIX:1-208 ( 79) GAAATTAAAAAAAATGAAA 1 chrXII:687615-688886 ( 69) TAAAATGGAAGAAAGATAA 1 chrXII:241344-242029 ( 35) AAAATAAGTAATAAAATTT 1 chrXV:832317-832818 ( 39) AAGAATAAAATAGTAAAGG 1 chrVII:555099-558427 ( 25) GAAATTGATAAAAAATATA 1 chrXII:522120-523508 ( 57) GAAGACAGAATAGTGAACG 1 chrX:745245-745734 ( 66) GTAGTAAGTAGAGAGATGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAAARAAAAAARAWDR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 47232 bayes= 10.0151 E= 1.8e-069 39 -1329 164 -400 151 -417 -1329 -200 141 -1329 -26 -1329 144 -1329 -47 -1329 138 -1329 -1329 -91 139 -159 -217 -241 102 -1329 74 -268 83 -100 92 -1329 139 -317 -185 -183 160 -1329 -259 -1329 117 -1329 0 -168 107 -217 0 -154 127 -1329 35 -1329 138 -1329 -417 -100 88 -417 74 -168 134 -1329 -100 -168 52 -59 -217 25 -30 -136 53 36 64 -217 108 -200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAAARAAAAAARAWDR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 100 E= 1.8e-069 0.420000 0.000000 0.560000 0.020000 0.910000 0.010000 0.000000 0.080000 0.850000 0.000000 0.150000 0.000000 0.870000 0.000000 0.130000 0.000000 0.830000 0.000000 0.000000 0.170000 0.840000 0.060000 0.040000 0.060000 0.650000 0.000000 0.300000 0.050000 0.570000 0.090000 0.340000 0.000000 0.840000 0.020000 0.050000 0.090000 0.970000 0.000000 0.030000 0.000000 0.720000 0.000000 0.180000 0.100000 0.670000 0.040000 0.180000 0.110000 0.770000 0.000000 0.230000 0.000000 0.830000 0.000000 0.010000 0.160000 0.590000 0.010000 0.300000 0.100000 0.810000 0.000000 0.090000 0.100000 0.460000 0.120000 0.040000 0.380000 0.260000 0.070000 0.260000 0.410000 0.500000 0.040000 0.380000 0.080000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAAAAARAAAAAARAWDR MEME-3 regular expression -------------------------------------------------------------------------------- [GA]AAAAA[AG][AG]AAAA[AG]A[AG]A[AT][TAG][AG] -------------------------------------------------------------------------------- Time 931.40 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:5-1278 5.93e-01 100 chrI:81888-82284 2.01e-01 100 chrI:138820-139365 4.42e-01 100 chrI:142091-143667 2.12e-01 100 chrI:165963-166796 9.66e-01 100 chrI:180920-181559 5.63e-06 30_[-1(3.33e-05)]_3_[-3(5.27e-08)]_\ 19 chrI:182337-183257 2.43e-01 100 chrI:229103-230190 3.43e-01 100 chrII:9335-9935 2.93e-11 6_[+2(8.20e-10)]_12_[-1(5.87e-09)]_\ 25 chrII:36154-36602 8.43e-01 100 chrII:44962-45323 3.69e-03 30_[+3(1.41e-06)]_51 chrII:59371-61366 6.02e-01 100 chrII:87962-88636 4.10e-02 4_[-3(1.02e-05)]_77 chrII:88999-90029 9.90e-01 100 chrII:165084-165820 6.62e-01 100 chrII:166970-168734 7.50e-01 100 chrII:181331-181583 9.04e-01 100 chrII:197148-197879 2.81e-13 39_[+2(7.43e-10)]_2_[-1(2.72e-11)]_\ 2 chrII:220437-221165 2.72e-02 54_[-3(7.71e-06)]_27 chrII:226809-230168 6.87e-01 100 chrII:236409-237333 5.68e-01 100 chrII:254701-256390 1.51e-01 100 chrII:265439-266723 8.94e-01 100 chrII:301226-301768 8.55e-01 100 chrII:326466-327200 1.58e-11 14_[+1(1.61e-11)]_2_[-2(9.07e-08)]_\ 27 chrII:331754-333429 5.61e-01 100 chrII:347352-347959 4.44e-11 6_[+2(8.20e-10)]_12_[-1(5.87e-09)]_\ 25 chrII:350432-351218 2.16e-02 59_[+2(3.95e-05)]_13 chrII:376258-377182 4.68e-01 100 chrII:404474-406482 3.29e-01 100 chrII:415495-415922 1.19e-02 37_[+3(1.99e-06)]_44 chrII:476875-477795 6.66e-05 46_[+3(1.03e-07)]_35 chrII:478946-479513 6.74e-01 100 chrII:544559-544771 5.25e-01 100 chrII:556078-558584 7.06e-01 100 chrII:592333-593555 1.30e-01 100 chrII:604025-607129 1.58e-01 100 chrII:642865-643465 3.60e-01 100 chrII:644960-645464 4.35e-08 12_[+2(2.88e-05)]_1_[-1(5.87e-09)]_\ 30 chrII:680410-682157 1.84e-01 100 chrIII:2-2120 8.88e-01 100 chrIII:11075-11522 3.54e-01 100 chrIII:13974-16159 2.15e-01 100 chrIII:28594-31373 7.18e-01 100 chrIII:58770-58991 3.41e-01 100 chrIII:78132-78727 1.29e-01 100 chrIII:81910-82822 4.38e-02 48_[+3(1.34e-05)]_33 chrIII:107007-107747 1.71e-01 100 chrIII:123370-124104 2.50e-01 100 chrIII:127267-127869 3.52e-02 100 chrIII:142143-142981 1.54e-02 51_[+3(2.49e-06)]_30 chrIII:161724-164260 6.89e-01 100 chrIII:168033-169728 7.30e-01 100 chrIII:176763-179548 6.72e-01 100 chrIII:227731-228201 7.99e-06 33_[+2(1.75e-09)]_39 chrIII:291851-293054 9.57e-01 100 chrIII:293625-295938 7.59e-01 100 chrIII:315630-316618 7.77e-01 100 chrIV:28-311 4.34e-01 100 chrIV:83281-83856 2.24e-08 65_[-1(2.39e-11)]_6 chrIV:116381-116568 4.30e-01 100 chrIV:116790-118227 5.19e-02 100 chrIV:129413-131003 6.86e-01 100 chrIV:217048-218855 6.92e-02 100 chrIV:220844-222416 3.12e-01 100 chrIV:229449-230705 4.87e-01 100 chrIV:306455-307281 2.86e-01 100 chrIV:307924-308722 8.94e-01 100 chrIV:309048-310203 3.93e-01 100 chrIV:321487-321973 4.32e-01 100 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68_[-3(6.56e-05)]_13 chrXII:711820-713601 3.54e-02 100 chrXII:731809-732264 9.97e-01 100 chrXII:734703-735150 2.54e-03 43_[-3(8.70e-07)]_38 chrXII:780765-781942 3.19e-03 73_[-3(4.23e-05)]_8 chrXII:784125-784552 4.49e-01 100 chrXII:793708-795672 4.80e-01 100 chrXII:795972-797393 3.69e-01 100 chrXII:805317-806120 5.04e-02 12_[+3(4.23e-05)]_69 chrXII:815141-816064 5.98e-01 100 chrXII:817438-817606 8.40e-01 100 chrXII:817778-820426 1.45e-03 10_[-3(5.23e-07)]_71 chrXII:837680-839101 2.61e-01 100 chrXII:855922-857599 1.24e-01 100 chrXII:875214-875642 6.98e-11 5_[+2(9.11e-09)]_25_[-1(1.64e-09)]_\ 13 chrXII:897634-900141 7.38e-01 100 chrXII:921730-922627 5.96e-01 100 chrXII:931685-931878 7.91e-01 100 chrXII:932050-932549 6.23e-01 100 chrXII:949709-950630 2.33e-01 100 chrXII:950932-953683 8.54e-01 100 chrXII:962676-963911 8.75e-01 100 chrXII:975689-976311 1.74e-15 38_[+1(2.04e-10)]_2_[-2(2.41e-12)]_\ 3 chrXII:1017789-1019438 4.77e-01 100 chrXII:1028172-1028561 2.83e-03 18_[-3(5.23e-07)]_63 chrXII:1051848-1052618 4.04e-01 100 chrXII:1064060-1065358 6.53e-01 100 chrXIII:20-196 1.17e-03 53_[+3(5.23e-07)]_28 chrXIII:5327-5745 7.32e-01 100 chrXIII:23733-26119 6.04e-01 100 chrXIII:91647-92121 8.64e-03 76_[+3(6.35e-06)]_5 chrXIII:123894-124848 4.18e-01 100 chrXIII:131269-132229 3.58e-02 1_[+1(5.57e-05)]_70 chrXIII:145768-146377 1.15e-03 3_[-3(1.41e-06)]_78 chrXIII:168563-169149 1.90e-09 42_[-1(1.79e-09)]_6_[-3(2.24e-07)]_\ 4 chrXIII:183666-184184 2.42e-09 28_[+1(2.39e-11)]_43 chrXIII:195880-196446 2.85e-01 100 chrXIII:222635-224725 6.46e-02 17_[+2(7.05e-05)]_55 chrXIII:225335-226693 6.01e-01 100 chrXIII:258982-259763 3.87e-01 100 chrXIII:267622-268559 3.92e-02 12_[-3(8.48e-06)]_69 chrXIII:290366-291145 3.65e-01 100 chrXIII:296672-298986 4.96e-01 100 chrXIII:302342-303174 7.35e-01 100 chrXIII:320908-321330 7.25e-02 64_[+3(4.56e-05)]_17 chrXIII:352060-352506 1.53e-04 54_[+2(1.74e-08)]_18 chrXIII:362777-363647 1.29e-01 100 chrXIII:372045-372815 2.44e-10 19_[+1(7.24e-05)]_22_[+1(8.78e-14)]_\ 1 chrXIII:378829-379635 9.40e-02 100 chrXIII:420317-421484 9.59e-01 100 chrXIII:433513-433805 7.94e-02 100 chrXIII:463069-464427 2.00e-01 100 chrXIII:480151-480940 9.43e-01 100 chrXIII:499014-500400 2.59e-02 21_[+3(2.87e-05)]_60 chrXIII:504634-505356 8.05e-04 28_[-1(3.33e-05)]_[-3(1.60e-05)]_24 chrXIII:550613-553360 2.05e-02 73_[+3(7.00e-06)]_8 chrXIII:572595-573556 5.94e-01 100 chrXIII:586408-586922 6.39e-17 26_[+1(8.78e-14)]_2_[-2(3.41e-11)]_\ 15 chrXIII:650629-651757 2.22e-01 100 chrXIII:652020-652969 6.62e-02 81_[-3(4.23e-05)] chrXIII:731193-733547 8.26e-01 100 chrXIII:747727-748256 7.41e-02 100 chrXIII:748466-748831 2.76e-01 100 chrXIII:754424-755088 8.57e-01 100 chrXIII:761341-764687 1.30e-02 16_[+3(2.23e-06)]_65 chrXIII:766973-768691 7.83e-02 100 chrXIII:807653-808588 3.38e-03 79_[-3(1.78e-06)]_2 chrXIII:837646-838280 3.23e-06 68_[-1(1.79e-09)]_3 chrXIII:872685-872944 2.68e-01 100 chrXIII:888488-889322 7.45e-01 100 chrXIII:892556-893700 6.06e-01 100 chrXIII:923138-924361 6.12e-01 100 chrXIV:6522-7193 1.01e-01 100 chrXIV:61616-63608 7.65e-01 100 chrXIV:88574-90170 6.61e-01 100 chrXIV:95955-96676 3.67e-01 100 chrXIV:102433-103040 8.30e-15 38_[+2(2.41e-12)]_2_[-1(2.04e-10)]_\ 3 chrXIV:104584-105321 3.62e-01 100 chrXIV:173920-174622 2.64e-01 100 chrXIV:229369-231051 5.18e-01 100 chrXIV:241158-241725 8.88e-01 100 chrXIV:302075-303620 1.07e-01 100 chrXIV:330629-332392 2.69e-02 100 chrXIV:351629-352943 6.54e-02 100 chrXIV:374655-375412 9.01e-02 100 chrXIV:413545-416916 4.54e-01 100 chrXIV:442810-444283 7.42e-01 100 chrXIV:444457-444851 3.51e-03 43_[-3(1.25e-06)]_38 chrXIV:495211-495621 2.19e-01 100 chrXIV:499175-499772 3.31e-02 48_[-3(2.07e-05)]_33 chrXIV:499958-501858 1.74e-01 100 chrXIV:546935-547625 9.94e-01 100 chrXIV:560051-561666 9.49e-01 100 chrXIV:567841-568722 6.96e-04 77_[+3(2.24e-07)]_4 chrXIV:569609-570128 4.09e-08 54_[+1(2.72e-11)]_17 chrXIV:575103-577357 1.98e-01 100 chrXIV:585414-586612 5.42e-01 100 chrXIV:602190-602620 1.61e-02 28_[-3(1.74e-05)]_53 chrXIV:631492-632205 2.78e-12 53_[+1(3.37e-16)]_18 chrXIV:632385-632893 3.09e-19 18_[+2(2.41e-12)]_2_[-1(2.04e-10)]_\ 3_[-3(1.42e-07)]_1 chrXIV:715479-716663 9.55e-03 41_[-3(3.10e-06)]_40 chrXIV:725768-726425 2.12e-03 70_[+3(3.10e-06)]_11 chrXIV:783775-784328 7.81e-01 100 chrXV:6-1065 9.28e-01 100 chrXV:79770-80143 2.16e-01 100 chrXV:91762-94880 3.19e-01 100 chrXV:109571-111268 3.43e-01 100 chrXV:113439-114216 4.55e-13 3_[+2(3.73e-05)]_1_[+2(1.33e-10)]_2_\ [-1(2.53e-10)]_9 chrXV:161097-161436 5.97e-01 100 chrXV:167593-168926 7.35e-01 100 chrXV:216249-216819 1.63e-03 28_[-2(9.16e-06)]_44 chrXV:226481-226912 2.10e-01 100 chrXV:227347-228636 7.31e-01 100 chrXV:253442-254116 6.97e-01 100 chrXV:274465-275050 6.37e-04 31_[-1(2.14e-07)]_40 chrXV:281691-282512 2.34e-01 100 chrXV:287866-288419 8.77e-02 100 chrXV:300621-301446 3.40e-01 100 chrXV:339972-340743 8.45e-07 28_[-2(4.96e-10)]_44 chrXV:353852-354808 4.78e-01 100 chrXV:382861-383483 1.37e-02 5_[+3(3.84e-06)]_76 chrXV:438357-439168 9.79e-04 60_[-3(3.48e-07)]_21 chrXV:463881-464667 4.59e-01 100 chrXV:487213-487741 8.30e-15 20_[+2(2.41e-12)]_2_[-1(2.04e-10)]_\ 21 chrXV:504899-506853 6.43e-01 100 chrXV:571387-572269 8.05e-01 100 chrXV:594123-594839 9.98e-01 100 chrXV:619568-624690 7.08e-01 100 chrXV:663486-664280 2.10e-07 15_[-2(3.41e-11)]_57 chrXV:677760-679383 2.31e-03 20_[-3(2.60e-07)]_38_[-3(7.67e-07)]_\ 4 chrXV:709966-710803 2.27e-02 41_[+3(2.44e-05)]_40 chrXV:759154-759782 1.09e-01 100 chrXV:769730-770204 1.81e-01 100 chrXV:779704-780931 6.47e-01 100 chrXV:832317-832818 7.50e-02 38_[-3(7.55e-05)]_43 chrXV:854003-854435 2.26e-13 23_[+1(2.39e-11)]_2_[-2(7.43e-10)]_\ 18 chrXV:866538-867346 3.35e-02 52_[+2(2.28e-05)]_20 chrXV:901466-902077 9.53e-01 100 chrXV:904314-905344 2.54e-02 24_[+3(7.00e-06)]_57 chrXV:967417-968429 4.15e-04 6_[+3(4.23e-05)]_41_[-3(1.03e-07)]_\ 15 chrXV:976163-978477 4.90e-01 100 chrXV:978848-979158 1.55e-02 22_[+2(4.29e-05)]_50 chrXV:979778-981207 8.97e-01 100 chrXV:1003355-1005508 3.15e-02 19_[-3(1.34e-05)]_62 chrXV:1025229-1026359 4.07e-01 100 chrXV:1028534-1029662 7.40e-01 100 chrXV:1070772-1071137 2.97e-01 100 chrXVI:55482-56628 6.82e-01 100 chrXVI:76194-76689 1.08e-01 18_[-1(9.08e-05)]_53 chrXVI:135325-135878 6.87e-01 100 chrXVI:172778-174112 5.92e-01 100 chrXVI:188525-189282 3.90e-05 73_[-3(1.18e-08)]_8 chrXVI:209565-210566 6.40e-01 100 chrXVI:277699-278419 2.66e-01 100 chrXVI:280609-282817 8.60e-01 100 chrXVI:302552-304722 3.17e-01 100 chrXVI:338697-339134 2.36e-01 100 chrXVI:378675-379011 4.12e-01 100 chrXVI:404512-405834 9.20e-01 100 chrXVI:406081-408486 8.07e-01 100 chrXVI:435649-436218 7.21e-06 15_[+1(2.34e-09)]_56 chrXVI:520181-520547 2.96e-02 32_[-1(7.45e-05)]_39 chrXVI:559669-560557 2.24e-03 69_[-3(5.23e-07)]_12 chrXVI:571592-572602 9.45e-01 100 chrXVI:575793-576373 1.58e-01 100 chrXVI:581507-582466 7.63e-01 100 chrXVI:586420-587161 9.04e-01 100 chrXVI:587547-588099 8.57e-01 100 chrXVI:622151-622842 7.15e-02 100 chrXVI:689188-690212 9.33e-01 100 chrXVI:699938-700700 4.79e-03 10_[-3(7.55e-05)]_37_[+3(4.26e-06)]_\ 15 chrXVI:701821-702589 6.60e-01 100 chrXVI:718470-719453 1.55e-01 100 chrXVI:731627-732333 3.79e-01 100 chrXVI:743777-744663 9.94e-01 100 chrXVI:768537-768754 9.35e-01 100 chrXVI:768935-770743 7.03e-01 100 chrXVI:775638-776230 7.40e-01 100 chrXVI:794348-794779 7.75e-01 100 chrXVI:794966-795994 3.81e-02 65_[+1(9.88e-05)]_6 chrXVI:810390-810884 6.01e-01 100 chrXVI:819261-820003 7.35e-04 80_[-3(2.24e-07)]_1 chrXVI:820538-820784 1.36e-01 100 chrXVI:856252-857233 4.67e-01 100 chrXVI:860097-860659 2.28e-01 100 chrXVI:880020-881135 5.97e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************