******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CUP2/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:4-1061 1.0000 100 chrI:71790-73666 1.0000 100 chrI:81862-82267 1.0000 100 chrI:138959-139327 1.0000 100 chrI:141566-143762 1.0000 100 chrI:151583-151969 1.0000 100 chrI:160012-160270 1.0000 100 chrI:166067-166572 1.0000 100 chrI:180923-181480 1.0000 100 chrI:182318-182759 1.0000 100 chrI:229267-230194 1.0000 100 chrII:9375-9989 1.0000 100 chrII:36190-36575 1.0000 100 chrII:44952-45321 1.0000 100 chrII:60104-61278 1.0000 100 chrII:87929-88558 1.0000 100 chrII:88951-89522 1.0000 100 chrII:89702-90019 1.0000 100 chrII:165099-165428 1.0000 100 chrII:167545-168199 1.0000 100 chrII:181333-181602 1.0000 100 chrII:197202-197862 1.0000 100 chrII:226870-227377 1.0000 100 chrII:265974-266696 1.0000 100 chrII:301127-301601 1.0000 100 chrII:326538-327173 1.0000 100 chrII:332322-332850 1.0000 100 chrII:347400-348123 1.0000 100 chrII:350566-351134 1.0000 100 chrII:373546-375811 1.0000 100 chrII:405576-406285 1.0000 100 chrII:415539-415859 1.0000 100 chrII:444750-445010 1.0000 100 chrII:477101-477777 1.0000 100 chrII:478979-479513 1.0000 100 chrII:592329-593253 1.0000 100 chrII:604084-606111 1.0000 100 chrII:642885-643359 1.0000 100 chrII:644974-645416 1.0000 100 chrII:680413-682181 1.0000 100 chrII:813009-813182 1.0000 100 chrIII:4-1455 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chrXVI:172890-174114 1.0000 100 chrXVI:188588-188930 1.0000 100 chrXVI:209561-210479 1.0000 100 chrXVI:280504-281856 1.0000 100 chrXVI:302371-302936 1.0000 100 chrXVI:338749-339222 1.0000 100 chrXVI:378684-378994 1.0000 100 chrXVI:404539-405848 1.0000 100 chrXVI:406203-407790 1.0000 100 chrXVI:435186-436186 1.0000 100 chrXVI:514512-517119 1.0000 100 chrXVI:520112-520693 1.0000 100 chrXVI:560042-560492 1.0000 100 chrXVI:571731-572557 1.0000 100 chrXVI:581823-582318 1.0000 100 chrXVI:622090-622842 1.0000 100 chrXVI:689349-689864 1.0000 100 chrXVI:699930-700712 1.0000 100 chrXVI:701855-702428 1.0000 100 chrXVI:718417-719503 1.0000 100 chrXVI:731646-732278 1.0000 100 chrXVI:743982-744525 1.0000 100 chrXVI:769016-769475 1.0000 100 chrXVI:775691-776178 1.0000 100 chrXVI:794492-794783 1.0000 100 chrXVI:810469-810840 1.0000 100 chrXVI:819324-819982 1.0000 100 chrXVI:820191-820607 1.0000 100 chrXVI:821641-822126 1.0000 100 chrXVI:856770-857100 1.0000 100 chrXVI:860088-860621 1.0000 100 chrXVI:860941-861113 1.0000 100 chrXVI:880126-880563 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CUP2/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CUP2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CUP2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 552 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 55200 N= 552 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.303 C 0.197 G 0.197 T 0.303 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CUP2/background): A 0.314 C 0.186 G 0.186 T 0.314 ******************************************************************************** ******************************************************************************** MOTIF AGRTCVBSGGTTCGATYCCSS MEME-1 width = 21 sites = 100 llr = 1703 E-value = 1.5e-343 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGRTCVBSGGTTCGATYCCSS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 6142:3:12::::2a2::::2 pos.-specific C 12118444::::a::24a753 probability G 2651:2358a:::8:2:::45 matrix T :::62131::aa:::56:21: bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 **** * * Relative 1.5 * ****** * Entropy 1.2 * ******* ** (24.6 bits) 1.0 * ******* *** 0.7 ** * ******** ***** 0.5 *** *********** ***** 0.2 *************** ***** 0.0 --------------------- Multilevel AGGTCCCGGGTTCGATTCCCG consensus GCAATAGC A CC TGC sequence GT A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCVBSGGTTCGATYCCSS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:631534-632145 - 66 1.47e-13 AGGGTGCGGG AGGTCCCGGGTTCGAGTCCCG GCTCGCCCCC chrIII:123392-123794 - 43 1.47e-13 AGGGTGCGGG AGGTCCCGGGTTCGAGTCCCG GCTCGCCCCA chrXV:853954-854429 - 55 2.06e-11 TGCAAGGAAG AGGTCATCGGTTCGATTCCGG TTGCGTCCAA chrXII:214582-215146 - 78 2.06e-11 AG AGGTCATCGGTTCGATTCCGG TTGCGTCCAT chrVII:794191-794791 + 19 2.06e-11 TGCAAGGAAG AGGTCATCGGTTCGATTCCGG TTGCGTCCAT chrV:311764-312297 - 52 2.06e-11 TGCAAGGAAG AGGTCATCGGTTCGATTCCGG TTGCGTCCAA chrI:166067-166572 + 41 2.06e-11 TGCAAGGAAG AGGTCATCGGTTCGATTCCGG TTGCGTCCAA chrXV:226354-226879 - 54 3.13e-11 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAA chrX:531566-532205 + 34 3.13e-11 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrVII:930793-931220 - 6 3.13e-11 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTG chrVI:162019-162475 + 72 3.13e-11 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGC chrIV:83322-83811 + 73 3.13e-11 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCG chrXVI:856770-857100 + 60 9.44e-11 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAT chrXIII:768180-768641 - 18 9.44e-11 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAA chrXIII:321001-321320 - 46 9.44e-11 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAT chrXII:656711-657177 - 49 9.44e-11 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAA chrIV:410178-410728 + 19 9.44e-11 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCCAA chrXVI:880126-880563 - 11 1.58e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrVII:738834-739498 + 50 1.58e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrV:551067-551567 - 27 1.58e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAA chrIX:210525-210976 + 9 1.58e-10 TAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrIV:667767-668239 - 63 1.58e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrII:197202-197862 + 56 1.58e-10 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrXIII:480373-480923 - 32 2.56e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrXI:202838-203313 + 17 2.56e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrX:414792-415291 + 18 2.56e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrVI:226573-226920 - 1 2.56e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC chrIV:1352326-1352721 - 2 2.56e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC T chrIV:1201491-1202114 + 41 2.56e-10 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrVII:779392-779915 + 55 6.23e-10 TTCCAAGGTG GGGACACGGGTTCGATTCTCG TACCGCTCAA chrV:130846-131430 - 3 9.45e-10 TTTGATCCGA ACAACCCCGGTTCGAATCCGG GT chrIV:802543-802985 - 26 9.45e-10 TTTGATCCGG ACAACCCCGGTTCGAATCCGG GTAGGACCTC chrIV:645003-645376 - 23 9.45e-10 TTTGATCCGG ACAACCCCGGTTCGAATCCGG GTAGGACCTT chrIV:520610-521414 + 52 9.45e-10 TTTGATCCGG ACAACCCCGGTTCGAATCCGG GTAGGACCTT chrII:350566-351134 + 69 9.45e-10 TTTGATCCGG ACAACCCCGGTTCGAATCCGG GTAAGACCTT chrVII:541606-542185 + 47 1.08e-09 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrVII:401395-401751 - 13 1.08e-09 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrV:176815-177477 + 45 1.08e-09 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrIX:197375-197983 + 5 1.08e-09 CGTG GAGACCGGGGTTCGACTCCCC GCTTCGGAGT chrIV:1016919-1017484 - 65 1.08e-09 TCTCACCGTG GAGACCGGGGTTCGACTCCCC GCTTCGGAGT chrII:644974-645416 + 64 1.08e-09 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrX:538354-538861 + 40 1.59e-09 CCTAAGGAGA AGACTGCGGGTTCGAGTCCCG TACGGAACGT chrXVI:769016-769475 - 21 2.33e-09 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrXV:300862-301476 + 50 2.33e-09 AGCATGCGAG AGGCCCTGGGTTCAATTCCCA GCTCGCCCCC chrXIV:546959-547395 + 40 2.33e-09 AGCATGCGAG AGGCCCTGGGTTCAATTCCCA GCTCGCCCCG chrXII:875193-875694 + 49 2.33e-09 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrXI:578788-579334 + 20 2.33e-09 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrVIII:388648-389220 - 18 2.33e-09 AGCATGCGAG AGGCCCTGGGTTCAATTCCCA GCTCGCCCCA chrXV:663477-664232 - 17 2.64e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCGT chrXIII:586377-586910 - 52 2.64e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXIII:420341-420840 - 57 2.64e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXIII:372193-372734 - 41 2.64e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXII:687649-688148 - 20 2.64e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXI:307972-308410 - 12 2.64e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAA chrV:469262-469777 + 32 2.64e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXI:162329-162716 - 24 4.21e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGT chrX:374207-374853 - 35 4.21e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrX:355163-355749 + 10 4.21e-09 CTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrVII:828474-828973 - 59 4.21e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrVII:405267-405734 + 62 4.21e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrIV:568690-569231 + 14 4.21e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrIV:488449-489140 - 62 4.21e-09 TACACGGCGA AGATCCCGAGTTCGAACCTCG GTTGGATCAG chrII:405576-406285 + 40 4.21e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrXV:113549-114165 + 38 1.37e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrXIV:104606-105124 + 33 1.37e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrIX:325492-326094 + 48 1.37e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAA chrIV:434062-434539 - 23 1.37e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrX:354027-354593 + 43 4.19e-08 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrVI:210419-210925 - 6 4.19e-08 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGG chrVI:167259-167711 + 61 4.19e-08 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrIV:946149-946600 + 47 4.19e-08 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrXIII:463315-463881 + 48 4.97e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrXII:426901-427446 + 51 4.97e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrX:541326-541815 + 30 4.97e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrIX:336121-336635 - 30 4.97e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrIX:323969-324723 - 16 4.97e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrVIII:466754-467326 + 42 5.87e-08 TGTAATGCAA AGGTCGCTAGTTCAATTCTGG CAGGTGGCAT chrXVI:55793-56503 - 80 6.37e-08 . GGGTTGCAGGTTCAATTCCTG TCCGTTTCAA chrXII:374214-374664 + 9 6.37e-08 GAACCAGA AGATTCCAGGTTCAAGTCCTG GCGGGGAAGA chrIV:619685-620264 - 54 6.37e-08 ACGAACCAGA AGATTCCAGGTTCAAGTCCTG GCGGGGAAGA chrXIV:632422-632868 + 48 1.10e-07 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrXIV:102493-102989 + 69 1.10e-07 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrXII:975761-976290 - 17 1.10e-07 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrVII:730951-731423 + 44 1.10e-07 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrX:390799-391318 - 44 1.71e-07 CATAATCTGA AGGTCGAGAGTTCGAACCTCC CCTGGAGCAT chrXII:167702-168297 - 4 1.83e-07 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTG CAG chrVIII:132743-133392 - 18 1.83e-07 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTG CAGTTGTCGA chrIV:980773-981255 - 19 1.83e-07 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTG CAGTTGTCGT chrII:226870-227377 + 54 1.83e-07 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTG CAGTTGTCGT chrI:182318-182759 - 43 1.83e-07 TTGGGCTTTG CCCGCGCAGGTTCGAGTCCTG CAGTTGTCGT chrVIII:358208-358819 - 24 1.96e-07 AGTTATCTGG AGGTCCTGTGTTCGATCCACA GAATTCGCAT chrIV:1095118-1095704 - 18 1.96e-07 AGATATCTGG AGGTCCTGTGTTCGATCCACA GAGTTCGCAT chrXIII:362872-363340 + 50 4.46e-07 TGTGGCCGAT GAAACCCTGGTTCGATTCTAG GAGATGGCAT chrVII:110411-110926 - 16 4.46e-07 TGTGGCCGAT GAAACCCTGGTTCGATTCTAG GAGATGGCAA chrV:434392-434755 - 27 4.46e-07 TGTGGCCGAT GAAACCCTGGTTCGATTCTAG GAGATGGCAT chrVII:706928-707334 - 36 5.01e-07 GCAAATCTGT TGGTCCTTAGTTCGATCCTGA GTGCGAGCTT chrXVI:689349-689864 + 61 7.35e-07 TTGGGCTCTG CCCGCGCTGGTTCAAATCCTG CTGGTGTCGT chrV:288170-288727 - 54 7.35e-07 TTGGGCTCTG CCCGCGCTGGTTCAAATCCTG CTGGTGTCGT chrIII:227785-228193 + 74 7.35e-07 TTGGGCTCTG CCCGCGCTGGTTCAAATCCTG CTGGTG chrII:9375-9989 + 5 9.01e-07 GTTG TCCGCGCGAGTTCGAACCTCG CATCCTTCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCVBSGGTTCGATYCCSS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631534-632145 1.5e-13 65_[-1]_14 chrIII:123392-123794 1.5e-13 42_[-1]_37 chrXV:853954-854429 2.1e-11 54_[-1]_25 chrXII:214582-215146 2.1e-11 77_[-1]_2 chrVII:794191-794791 2.1e-11 18_[+1]_61 chrV:311764-312297 2.1e-11 51_[-1]_28 chrI:166067-166572 2.1e-11 40_[+1]_39 chrXV:226354-226879 3.1e-11 53_[-1]_26 chrX:531566-532205 3.1e-11 33_[+1]_46 chrVII:930793-931220 3.1e-11 5_[-1]_74 chrVI:162019-162475 3.1e-11 71_[+1]_8 chrIV:83322-83811 3.1e-11 72_[+1]_7 chrXVI:856770-857100 9.4e-11 59_[+1]_20 chrXIII:768180-768641 9.4e-11 17_[-1]_62 chrXIII:321001-321320 9.4e-11 45_[-1]_34 chrXII:656711-657177 9.4e-11 48_[-1]_31 chrIV:410178-410728 9.4e-11 18_[+1]_61 chrXVI:880126-880563 1.6e-10 10_[-1]_69 chrVII:738834-739498 1.6e-10 49_[+1]_30 chrV:551067-551567 1.6e-10 26_[-1]_53 chrIX:210525-210976 1.6e-10 8_[+1]_71 chrIV:667767-668239 1.6e-10 62_[-1]_17 chrII:197202-197862 1.6e-10 55_[+1]_24 chrXIII:480373-480923 2.6e-10 31_[-1]_48 chrXI:202838-203313 2.6e-10 16_[+1]_63 chrX:414792-415291 2.6e-10 17_[+1]_62 chrVI:226573-226920 2.6e-10 [-1]_79 chrIV:1352326-1352721 2.6e-10 1_[-1]_78 chrIV:1201491-1202114 2.6e-10 40_[+1]_39 chrVII:779392-779915 6.2e-10 54_[+1]_25 chrV:130846-131430 9.5e-10 2_[-1]_77 chrIV:802543-802985 9.5e-10 25_[-1]_54 chrIV:645003-645376 9.5e-10 22_[-1]_57 chrIV:520610-521414 9.5e-10 51_[+1]_28 chrII:350566-351134 9.5e-10 68_[+1]_11 chrVII:541606-542185 1.1e-09 46_[+1]_33 chrVII:401395-401751 1.1e-09 12_[-1]_67 chrV:176815-177477 1.1e-09 44_[+1]_35 chrIX:197375-197983 1.1e-09 4_[+1]_75 chrIV:1016919-1017484 1.1e-09 64_[-1]_15 chrII:644974-645416 1.1e-09 63_[+1]_16 chrX:538354-538861 1.6e-09 39_[+1]_40 chrXVI:769016-769475 2.3e-09 20_[-1]_59 chrXV:300862-301476 2.3e-09 49_[+1]_30 chrXIV:546959-547395 2.3e-09 39_[+1]_40 chrXII:875193-875694 2.3e-09 48_[+1]_31 chrXI:578788-579334 2.3e-09 19_[+1]_60 chrVIII:388648-389220 2.3e-09 17_[-1]_62 chrXV:663477-664232 2.6e-09 16_[-1]_63 chrXIII:586377-586910 2.6e-09 51_[-1]_28 chrXIII:420341-420840 2.6e-09 56_[-1]_23 chrXIII:372193-372734 2.6e-09 40_[-1]_39 chrXII:687649-688148 2.6e-09 19_[-1]_60 chrXI:307972-308410 2.6e-09 11_[-1]_68 chrV:469262-469777 2.6e-09 31_[+1]_48 chrXI:162329-162716 4.2e-09 23_[-1]_56 chrX:374207-374853 4.2e-09 34_[-1]_45 chrX:355163-355749 4.2e-09 9_[+1]_70 chrVII:828474-828973 4.2e-09 58_[-1]_21 chrVII:405267-405734 4.2e-09 61_[+1]_18 chrIV:568690-569231 4.2e-09 13_[+1]_66 chrIV:488449-489140 4.2e-09 61_[-1]_18 chrII:405576-406285 4.2e-09 39_[+1]_40 chrXV:113549-114165 1.4e-08 37_[+1]_42 chrXIV:104606-105124 1.4e-08 32_[+1]_47 chrIX:325492-326094 1.4e-08 47_[+1]_32 chrIV:434062-434539 1.4e-08 22_[-1]_57 chrX:354027-354593 4.2e-08 42_[+1]_37 chrVI:210419-210925 4.2e-08 5_[-1]_74 chrVI:167259-167711 4.2e-08 60_[+1]_19 chrIV:946149-946600 4.2e-08 46_[+1]_33 chrXIII:463315-463881 5e-08 47_[+1]_32 chrXII:426901-427446 5e-08 50_[+1]_29 chrX:541326-541815 5e-08 29_[+1]_50 chrIX:336121-336635 5e-08 29_[-1]_50 chrIX:323969-324723 5e-08 15_[-1]_64 chrVIII:466754-467326 5.9e-08 41_[+1]_38 chrXVI:55793-56503 6.4e-08 79_[-1] chrXII:374214-374664 6.4e-08 8_[+1]_71 chrIV:619685-620264 6.4e-08 53_[-1]_26 chrXIV:632422-632868 1.1e-07 47_[+1]_32 chrXIV:102493-102989 1.1e-07 68_[+1]_11 chrXII:975761-976290 1.1e-07 16_[-1]_63 chrVII:730951-731423 1.1e-07 43_[+1]_36 chrX:390799-391318 1.7e-07 43_[-1]_36 chrXII:167702-168297 1.8e-07 3_[-1]_76 chrVIII:132743-133392 1.8e-07 17_[-1]_62 chrIV:980773-981255 1.8e-07 18_[-1]_61 chrII:226870-227377 1.8e-07 53_[+1]_26 chrI:182318-182759 1.8e-07 42_[-1]_37 chrVIII:358208-358819 2e-07 23_[-1]_56 chrIV:1095118-1095704 2e-07 17_[-1]_62 chrXIII:362872-363340 4.5e-07 49_[+1]_30 chrVII:110411-110926 4.5e-07 15_[-1]_64 chrV:434392-434755 4.5e-07 26_[-1]_53 chrVII:706928-707334 5e-07 35_[-1]_44 chrXVI:689349-689864 7.3e-07 60_[+1]_19 chrV:288170-288727 7.3e-07 53_[-1]_26 chrIII:227785-228193 7.3e-07 73_[+1]_6 chrII:9375-9989 9e-07 4_[+1]_75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCVBSGGTTCGATYCCSS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGRTCVBSGGTTCGATYCCSS width=21 seqs=100 chrXIV:631534-632145 ( 66) AGGTCCCGGGTTCGAGTCCCG 1 chrIII:123392-123794 ( 43) AGGTCCCGGGTTCGAGTCCCG 1 chrXV:853954-854429 ( 55) AGGTCATCGGTTCGATTCCGG 1 chrXII:214582-215146 ( 78) AGGTCATCGGTTCGATTCCGG 1 chrVII:794191-794791 ( 19) AGGTCATCGGTTCGATTCCGG 1 chrV:311764-312297 ( 52) AGGTCATCGGTTCGATTCCGG 1 chrI:166067-166572 ( 41) AGGTCATCGGTTCGATTCCGG 1 chrXV:226354-226879 ( 54) GGGCCCCCGGTTCGATTCCGG 1 chrX:531566-532205 ( 34) GGGCCCCCGGTTCGATTCCGG 1 chrVII:930793-931220 ( 6) GGGCCCCCGGTTCGATTCCGG 1 chrVI:162019-162475 ( 72) GGGCCCCCGGTTCGATTCCGG 1 chrIV:83322-83811 ( 73) GGGCCCCCGGTTCGATTCCGG 1 chrXVI:856770-857100 ( 60) AGGTCTCCGGTTCGATTCCGG 1 chrXIII:768180-768641 ( 18) AGGTCTCCGGTTCGATTCCGG 1 chrXIII:321001-321320 ( 46) AGGTCTCCGGTTCGATTCCGG 1 chrXII:656711-657177 ( 49) AGGTCTCCGGTTCGATTCCGG 1 chrIV:410178-410728 ( 19) AGGTCTCCGGTTCGATTCCGG 1 chrXVI:880126-880563 ( 11) GGATCAGCGGTTCGATCCCGC 1 chrVII:738834-739498 ( 50) GGATCAGCGGTTCGATCCCGC 1 chrV:551067-551567 ( 27) GGATCAGCGGTTCGATCCCGC 1 chrIX:210525-210976 ( 9) GGATCAGCGGTTCGATCCCGC 1 chrIV:667767-668239 ( 63) GGATCAGCGGTTCGATCCCGC 1 chrII:197202-197862 ( 56) GGATCAGCGGTTCGATCCCGC 1 chrXIII:480373-480923 ( 32) AGGTTAGGGGTTCGAGCCCCC 1 chrXI:202838-203313 ( 17) AGGTTAGGGGTTCGAGCCCCC 1 chrX:414792-415291 ( 18) AGGTTAGGGGTTCGAGCCCCC 1 chrVI:226573-226920 ( 1) AGGTTAGGGGTTCGAGCCCCC 1 chrIV:1352326-1352721 ( 2) AGGTTAGGGGTTCGAGCCCCC 1 chrIV:1201491-1202114 ( 41) AGGTTAGGGGTTCGAGCCCCC 1 chrVII:779392-779915 ( 55) GGGACACGGGTTCGATTCTCG 1 chrV:130846-131430 ( 3) ACAACCCCGGTTCGAATCCGG 1 chrIV:802543-802985 ( 26) ACAACCCCGGTTCGAATCCGG 1 chrIV:645003-645376 ( 23) ACAACCCCGGTTCGAATCCGG 1 chrIV:520610-521414 ( 52) ACAACCCCGGTTCGAATCCGG 1 chrII:350566-351134 ( 69) ACAACCCCGGTTCGAATCCGG 1 chrVII:541606-542185 ( 47) GAGACCGGGGTTCGACTCCCC 1 chrVII:401395-401751 ( 13) GAGACCGGGGTTCGACTCCCC 1 chrV:176815-177477 ( 45) GAGACCGGGGTTCGACTCCCC 1 chrIX:197375-197983 ( 5) GAGACCGGGGTTCGACTCCCC 1 chrIV:1016919-1017484 ( 65) GAGACCGGGGTTCGACTCCCC 1 chrII:644974-645416 ( 64) GAGACCGGGGTTCGACTCCCC 1 chrX:538354-538861 ( 40) AGACTGCGGGTTCGAGTCCCG 1 chrXVI:769016-769475 ( 21) ATGTCAGGGGTTCGAGCCCCC 1 chrXV:300862-301476 ( 50) AGGCCCTGGGTTCAATTCCCA 1 chrXIV:546959-547395 ( 40) AGGCCCTGGGTTCAATTCCCA 1 chrXII:875193-875694 ( 49) ATGTCAGGGGTTCGAGCCCCC 1 chrXI:578788-579334 ( 20) ATGTCAGGGGTTCGAGCCCCC 1 chrVIII:388648-389220 ( 18) AGGCCCTGGGTTCAATTCCCA 1 chrXV:663477-664232 ( 17) ACGTCCCCAGTTCGATCCTGG 1 chrXIII:586377-586910 ( 52) ACGTCCCCAGTTCGATCCTGG 1 chrXIII:420341-420840 ( 57) ACGTCCCCAGTTCGATCCTGG 1 chrXIII:372193-372734 ( 41) ACGTCCCCAGTTCGATCCTGG 1 chrXII:687649-688148 ( 20) ACGTCCCCAGTTCGATCCTGG 1 chrXI:307972-308410 ( 12) ACGTCCCCAGTTCGATCCTGG 1 chrV:469262-469777 ( 32) ACGTCCCCAGTTCGATCCTGG 1 chrXI:162329-162716 ( 24) AGATTATGGGTTCGACCCCCA 1 chrX:374207-374853 ( 35) AGATTATGGGTTCGACCCCCA 1 chrX:355163-355749 ( 10) AGATTATGGGTTCGACCCCCA 1 chrVII:828474-828973 ( 59) AGATTATGGGTTCGACCCCCA 1 chrVII:405267-405734 ( 62) AGATTATGGGTTCGACCCCCA 1 chrIV:568690-569231 ( 14) AGATTATGGGTTCGACCCCCA 1 chrIV:488449-489140 ( 62) AGATCCCGAGTTCGAACCTCG 1 chrII:405576-406285 ( 40) AGATTATGGGTTCGACCCCCA 1 chrXV:113549-114165 ( 38) AGATCATCGGTTCAAATCCGA 1 chrXIV:104606-105124 ( 33) AGATCATCGGTTCAAATCCGA 1 chrIX:325492-326094 ( 48) AGATCATCGGTTCAAATCCGA 1 chrIV:434062-434539 ( 23) AGATCATCGGTTCAAATCCGA 1 chrX:354027-354593 ( 43) AGATCGGGCGTTCGACTCGCC 1 chrVI:210419-210925 ( 6) AGATCGGGCGTTCGACTCGCC 1 chrVI:167259-167711 ( 61) AGATCGGGCGTTCGACTCGCC 1 chrIV:946149-946600 ( 47) AGATCGGGCGTTCGACTCGCC 1 chrXIII:463315-463881 ( 48) CAGATCGGGGTTCAATTCCCC 1 chrXII:426901-427446 ( 51) CAGATCGGGGTTCAATTCCCC 1 chrX:541326-541815 ( 30) CAGATCGGGGTTCAATTCCCC 1 chrIX:336121-336635 ( 30) CAGATCGGGGTTCAATTCCCC 1 chrIX:323969-324723 ( 16) CAGATCGGGGTTCAATTCCCC 1 chrVIII:466754-467326 ( 42) AGGTCGCTAGTTCAATTCTGG 1 chrXVI:55793-56503 ( 80) GGGTTGCAGGTTCAATTCCTG 1 chrXII:374214-374664 ( 9) AGATTCCAGGTTCAAGTCCTG 1 chrIV:619685-620264 ( 54) AGATTCCAGGTTCAAGTCCTG 1 chrXIV:632422-632868 ( 48) AGATCGTGAGTTCAACCCTCA 1 chrXIV:102493-102989 ( 69) AGATCGTGAGTTCAACCCTCA 1 chrXII:975761-976290 ( 17) AGATCGTGAGTTCAACCCTCA 1 chrVII:730951-731423 ( 44) AGATCGTGAGTTCAACCCTCA 1 chrX:390799-391318 ( 44) AGGTCGAGAGTTCGAACCTCC 1 chrXII:167702-168297 ( 4) CCCGCGCAGGTTCGAGTCCTG 1 chrVIII:132743-133392 ( 18) CCCGCGCAGGTTCGAGTCCTG 1 chrIV:980773-981255 ( 19) CCCGCGCAGGTTCGAGTCCTG 1 chrII:226870-227377 ( 54) CCCGCGCAGGTTCGAGTCCTG 1 chrI:182318-182759 ( 43) CCCGCGCAGGTTCGAGTCCTG 1 chrVIII:358208-358819 ( 24) AGGTCCTGTGTTCGATCCACA 1 chrIV:1095118-1095704 ( 18) AGGTCCTGTGTTCGATCCACA 1 chrXIII:362872-363340 ( 50) GAAACCCTGGTTCGATTCTAG 1 chrVII:110411-110926 ( 16) GAAACCCTGGTTCGATTCTAG 1 chrV:434392-434755 ( 27) GAAACCCTGGTTCGATTCTAG 1 chrVII:706928-707334 ( 36) TGGTCCTTAGTTCGATCCTGA 1 chrXVI:689349-689864 ( 61) CCCGCGCTGGTTCAAATCCTG 1 chrV:288170-288727 ( 54) CCCGCGCTGGTTCAAATCCTG 1 chrIII:227785-228193 ( 74) CCCGCGCTGGTTCAAATCCTG 1 chrII:9375-9989 ( 5) TCCGCGCGAGTTCGAACCTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCVBSGGTTCGATYCCSS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 44160 bayes= 9.27432 E= 1.5e-343 101 -52 24 -397 -116 17 174 -339 24 -105 154 -1329 -65 -105 -105 98 -1329 207 -1329 -51 3 117 17 -265 -497 121 69 -27 -197 99 134 -197 -97 -222 207 -397 -1329 -1329 242 -1329 -1329 -1329 -1329 167 -1329 -1329 -1329 167 -1329 242 -1329 -1329 -45 -1329 205 -1329 167 -1329 -1329 -1329 -106 17 3 52 -1329 107 -1329 96 -1329 242 -1329 -1329 -397 199 -222 -65 -339 134 107 -151 -58 74 137 -1329 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCVBSGGTTCGATYCCSS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 100 E= 1.5e-343 0.630000 0.130000 0.220000 0.020000 0.140000 0.210000 0.620000 0.030000 0.370000 0.090000 0.540000 0.000000 0.200000 0.090000 0.090000 0.620000 0.000000 0.780000 0.000000 0.220000 0.320000 0.420000 0.210000 0.050000 0.010000 0.430000 0.300000 0.260000 0.080000 0.370000 0.470000 0.080000 0.160000 0.040000 0.780000 0.020000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.230000 0.000000 0.770000 0.000000 1.000000 0.000000 0.000000 0.000000 0.150000 0.210000 0.190000 0.450000 0.000000 0.390000 0.000000 0.610000 0.000000 1.000000 0.000000 0.000000 0.020000 0.740000 0.040000 0.200000 0.030000 0.470000 0.390000 0.110000 0.210000 0.310000 0.480000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCVBSGGTTCGATYCCSS MEME-1 regular expression -------------------------------------------------------------------------------- [AG][GC][GA][TA][CT][CAG][CGT][GC]GGTTC[GA]A[TC][TC]C[CT][CG][GCA] -------------------------------------------------------------------------------- Time 296.75 secs. ******************************************************************************** ******************************************************************************** MOTIF RNSSCTYWACCAACTKGGCCA MEME-2 width = 21 sites = 74 llr = 1301 E-value = 5.0e-251 ******************************************************************************** -------------------------------------------------------------------------------- Motif RNSSCTYWACCAACTKGGCCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 32:::11482:5a::121::a pos.-specific C 1264924:18a2:9:21:a7: probability G 4346:1::1::2:::469::: matrix T 23::16661::1:1a2:::3: bits 2.4 * * 2.2 * * 1.9 * * * ** 1.7 * * ** ** * Relative 1.5 *** ** *** **** Entropy 1.2 *** ** *** **** (25.4 bits) 1.0 *** ** *** ***** 0.7 *** ***** *** ***** 0.5 *** ***** *** ***** 0.2 * ******************* 0.0 --------------------- Multilevel GGCGCTTTACCAACTGGGCCA consensus ATGC CCA A G TA T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNSSCTYWACCAACTKGGCCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXVI:880126-880563 + 48 7.88e-12 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCATT chrXIV:602103-602524 - 56 7.88e-12 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCATT chrXIV:569705-570159 + 31 7.88e-12 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCACT chrXII:1051896-1052386 + 26 7.88e-12 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCATG chrVII:738834-739498 - 13 7.88e-12 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCTAT chrV:551067-551567 + 64 7.88e-12 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCTGT chrV:443029-443504 + 32 7.88e-12 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCAAA chrII:197202-197862 - 19 7.88e-12 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCTTG chrXV:353793-354432 + 24 1.01e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCAGT chrXV:113549-114165 - 2 1.01e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA T chrIX:325492-326094 - 12 1.01e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTCG chrIX:174840-175241 - 48 1.01e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTCG chrIV:434062-434539 + 59 1.01e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTTC chrIII:294968-295976 - 69 1.01e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTTA chrI:166067-166572 - 5 1.33e-10 TTGCAAGGGA AGCGCGCTACCAACTGCGCCA TGTG chrXVI:810469-810840 - 79 2.16e-10 C ACGCCTTAACCAACTTGGCCA TGGAGTCGCA chrXV:487187-487696 - 55 2.16e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTAA chrXIV:632422-632868 - 11 2.16e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCACT chrXIV:102493-102989 - 32 2.16e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTTA chrXII:975761-976290 + 54 2.16e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTTT chrVII:730951-731423 - 7 2.16e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGT chrIII:127541-127886 - 60 2.16e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCATT chrXVI:689349-689864 - 16 7.89e-10 TTTCAAGTCT GTCGCCTTAACCACTCGGCCA TAGTGCCCAA chrXVI:560042-560492 + 45 1.02e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTCA chrXIV:374653-375091 - 54 1.02e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AGTCCGCTTA chrXIII:352088-352502 - 42 1.02e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrVIII:358208-358819 + 79 1.02e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA A chrVIII:237756-238127 + 21 1.02e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrVI:157554-158441 + 33 1.02e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTC chrIV:1095118-1095704 + 73 1.02e-09 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AGTCCGC chrII:36190-36575 - 73 1.02e-09 TCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrXVI:769016-769475 + 80 1.48e-09 TTAAAAGCCG AACGCTCTACCAACTGAGCTA chrVII:115268-115755 - 34 1.48e-09 TTAAAAGCCG AACGCTCTACCAACTGAGCTA ACAAGGATGA chrIV:359336-359781 - 76 1.48e-09 GCCG AACGCTCTACCAACTGAGCTA ACAAGGATGA chrXVI:856770-857100 - 24 1.67e-09 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCGAA chrXIII:768180-768641 + 54 1.67e-09 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCATT chrX:197164-197590 + 31 1.67e-09 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCTAA chrVI:204813-205202 + 12 1.67e-09 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCGAA chrXII:731908-732257 - 65 2.97e-09 CCTAAATCTG ACGCCTTAAACCACTCGGCCA AACTCCCATT chrIII:227785-228193 - 10 3.31e-09 ATTCGAGTCT CTCGCCTTAACCACTCGGCCA TAGTGCCAT chrXII:167702-168297 + 49 3.68e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCATA chrX:523875-524330 + 14 3.68e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCTTT chrVIII:132743-133392 + 63 3.68e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCACT chrIV:980773-981255 + 64 3.68e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCTCA chrIV:437526-438017 - 58 3.68e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCTTA chrII:226870-227377 - 9 3.68e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCT chrXI:83959-84439 - 66 2.59e-08 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCATA chrX:424325-424745 + 3 2.59e-08 TG CCGCCTTAGACCACTCGGCCA ACCCTCCATC chrIV:519558-519903 - 70 2.59e-08 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCGTA chrXVI:581823-582318 - 49 2.80e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTCT chrXIII:480373-480923 + 68 2.80e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAC chrVI:226573-226920 + 37 2.80e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCATT chrV:435637-436002 + 28 2.80e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTCT chrIV:1352326-1352721 + 38 2.80e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAT chrIV:1201491-1202114 - 5 2.80e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAA chrXV:663477-664232 + 54 4.44e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCACT chrXIII:372193-372734 + 78 4.44e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CG chrXII:687649-688148 + 57 4.44e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCTAT chrXI:379466-379915 - 47 4.44e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCTAT chrXI:307972-308410 + 49 4.44e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCACT chrVII:823285-823695 - 49 4.44e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCACT chrVII:412157-412563 + 30 4.44e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCAGT chrXIII:572585-573310 + 31 5.52e-08 TTATGAGACT GACGCTCTTCCTACTGAGCTA CTGAAGCTGT chrX:422585-423290 - 57 5.52e-08 TTATGAGACT GACGCTCTTCCTACTGAGCTA CTGAAGCATA chrX:390799-391318 + 80 5.52e-08 TTATGAGACT GACGCTCTTCCTACTGAGCTA chrIV:1175596-1176073 - 52 5.52e-08 TTATGAGACT GACGCTCTTCCTACTGAGCTA CTGAAGCTTT chrXIII:504669-505206 - 15 6.80e-08 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrIV:1461489-1462198 + 9 6.80e-08 TGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrXV:288016-288407 - 38 9.48e-08 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGAAG chrXIII:168607-169032 - 33 9.48e-08 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGTGA chrVI:210419-210925 + 58 9.48e-08 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGTCG chrVI:167259-167711 - 9 9.48e-08 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGT chrXII:605160-605633 + 59 1.64e-07 CTATAAGCAC GAAGCTCTAACCACTGAGCTA CACGAGCATT chrXII:489290-489534 - 36 8.51e-07 CTACTCGGTC AGGCTCTTACCAGCTTAACTA CAGTTGATCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNSSCTYWACCAACTKGGCCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:880126-880563 7.9e-12 47_[+2]_32 chrXIV:602103-602524 7.9e-12 55_[-2]_24 chrXIV:569705-570159 7.9e-12 30_[+2]_49 chrXII:1051896-1052386 7.9e-12 25_[+2]_54 chrVII:738834-739498 7.9e-12 12_[-2]_67 chrV:551067-551567 7.9e-12 63_[+2]_16 chrV:443029-443504 7.9e-12 31_[+2]_48 chrII:197202-197862 7.9e-12 18_[-2]_61 chrXV:353793-354432 1e-11 23_[+2]_56 chrXV:113549-114165 1e-11 1_[-2]_78 chrIX:325492-326094 1e-11 11_[-2]_68 chrIX:174840-175241 1e-11 47_[-2]_32 chrIV:434062-434539 1e-11 58_[+2]_21 chrIII:294968-295976 1e-11 68_[-2]_11 chrI:166067-166572 1.3e-10 4_[-2]_75 chrXVI:810469-810840 2.2e-10 78_[-2]_1 chrXV:487187-487696 2.2e-10 54_[-2]_25 chrXIV:632422-632868 2.2e-10 10_[-2]_69 chrXIV:102493-102989 2.2e-10 31_[-2]_48 chrXII:975761-976290 2.2e-10 53_[+2]_26 chrVII:730951-731423 2.2e-10 6_[-2]_73 chrIII:127541-127886 2.2e-10 59_[-2]_20 chrXVI:689349-689864 7.9e-10 15_[-2]_64 chrXVI:560042-560492 1e-09 44_[+2]_35 chrXIV:374653-375091 1e-09 53_[-2]_26 chrXIII:352088-352502 1e-09 41_[-2]_38 chrVIII:358208-358819 1e-09 78_[+2]_1 chrVIII:237756-238127 1e-09 20_[+2]_59 chrVI:157554-158441 1e-09 32_[+2]_47 chrIV:1095118-1095704 1e-09 72_[+2]_7 chrII:36190-36575 1e-09 72_[-2]_7 chrXVI:769016-769475 1.5e-09 79_[+2] chrVII:115268-115755 1.5e-09 33_[-2]_46 chrIV:359336-359781 1.5e-09 75_[-2]_4 chrXVI:856770-857100 1.7e-09 23_[-2]_56 chrXIII:768180-768641 1.7e-09 53_[+2]_26 chrX:197164-197590 1.7e-09 30_[+2]_49 chrVI:204813-205202 1.7e-09 11_[+2]_68 chrXII:731908-732257 3e-09 64_[-2]_15 chrIII:227785-228193 3.3e-09 9_[-2]_70 chrXII:167702-168297 3.7e-09 48_[+2]_31 chrX:523875-524330 3.7e-09 13_[+2]_66 chrVIII:132743-133392 3.7e-09 62_[+2]_17 chrIV:980773-981255 3.7e-09 63_[+2]_16 chrIV:437526-438017 3.7e-09 57_[-2]_22 chrII:226870-227377 3.7e-09 8_[-2]_71 chrXI:83959-84439 2.6e-08 65_[-2]_14 chrX:424325-424745 2.6e-08 2_[+2]_77 chrIV:519558-519903 2.6e-08 69_[-2]_10 chrXVI:581823-582318 2.8e-08 48_[-2]_31 chrXIII:480373-480923 2.8e-08 67_[+2]_12 chrVI:226573-226920 2.8e-08 36_[+2]_43 chrV:435637-436002 2.8e-08 27_[+2]_52 chrIV:1352326-1352721 2.8e-08 37_[+2]_42 chrIV:1201491-1202114 2.8e-08 4_[-2]_75 chrXV:663477-664232 4.4e-08 53_[+2]_26 chrXIII:372193-372734 4.4e-08 77_[+2]_2 chrXII:687649-688148 4.4e-08 56_[+2]_23 chrXI:379466-379915 4.4e-08 46_[-2]_33 chrXI:307972-308410 4.4e-08 48_[+2]_31 chrVII:823285-823695 4.4e-08 48_[-2]_31 chrVII:412157-412563 4.4e-08 29_[+2]_50 chrXIII:572585-573310 5.5e-08 30_[+2]_49 chrX:422585-423290 5.5e-08 56_[-2]_23 chrX:390799-391318 5.5e-08 79_[+2] chrIV:1175596-1176073 5.5e-08 51_[-2]_28 chrXIII:504669-505206 6.8e-08 14_[-2]_65 chrIV:1461489-1462198 6.8e-08 8_[+2]_71 chrXV:288016-288407 9.5e-08 37_[-2]_42 chrXIII:168607-169032 9.5e-08 32_[-2]_47 chrVI:210419-210925 9.5e-08 57_[+2]_22 chrVI:167259-167711 9.5e-08 8_[-2]_71 chrXII:605160-605633 1.6e-07 58_[+2]_21 chrXII:489290-489534 8.5e-07 35_[-2]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNSSCTYWACCAACTKGGCCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RNSSCTYWACCAACTKGGCCA width=21 seqs=74 chrXVI:880126-880563 ( 48) GTGCCTTAACCAACTGGGCCA 1 chrXIV:602103-602524 ( 56) GTGCCTTAACCAACTGGGCCA 1 chrXIV:569705-570159 ( 31) GTGCCTTAACCAACTGGGCCA 1 chrXII:1051896-1052386 ( 26) GTGCCTTAACCAACTGGGCCA 1 chrVII:738834-739498 ( 13) GTGCCTTAACCAACTGGGCCA 1 chrV:551067-551567 ( 64) GTGCCTTAACCAACTGGGCCA 1 chrV:443029-443504 ( 32) GTGCCTTAACCAACTGGGCCA 1 chrII:197202-197862 ( 19) GTGCCTTAACCAACTGGGCCA 1 chrXV:353793-354432 ( 24) GGCGCCTTACCAACTTGGCCA 1 chrXV:113549-114165 ( 2) GGCGCCTTACCAACTTGGCCA 1 chrIX:325492-326094 ( 12) GGCGCCTTACCAACTTGGCCA 1 chrIX:174840-175241 ( 48) GGCGCCTTACCAACTTGGCCA 1 chrIV:434062-434539 ( 59) GGCGCCTTACCAACTTGGCCA 1 chrIII:294968-295976 ( 69) GGCGCCTTACCAACTTGGCCA 1 chrI:166067-166572 ( 5) AGCGCGCTACCAACTGCGCCA 1 chrXVI:810469-810840 ( 79) ACGCCTTAACCAACTTGGCCA 1 chrXV:487187-487696 ( 55) ACGCCTTAACCAACTTGGCCA 1 chrXIV:632422-632868 ( 11) ACGCCTTAACCAACTTGGCCA 1 chrXIV:102493-102989 ( 32) ACGCCTTAACCAACTTGGCCA 1 chrXII:975761-976290 ( 54) ACGCCTTAACCAACTTGGCCA 1 chrVII:730951-731423 ( 7) ACGCCTTAACCAACTTGGCCA 1 chrIII:127541-127886 ( 60) ACGCCTTAACCAACTTGGCCA 1 chrXVI:689349-689864 ( 16) GTCGCCTTAACCACTCGGCCA 1 chrXVI:560042-560492 ( 45) GGCGCTCTCCCAACTGAGCTA 1 chrXIV:374653-375091 ( 54) GGCGCTCTCCCAACTGAGCTA 1 chrXIII:352088-352502 ( 42) GGCGCTCTCCCAACTGAGCTA 1 chrVIII:358208-358819 ( 79) GGCGCTCTCCCAACTGAGCTA 1 chrVIII:237756-238127 ( 21) GGCGCTCTCCCAACTGAGCTA 1 chrVI:157554-158441 ( 33) GGCGCTCTCCCAACTGAGCTA 1 chrIV:1095118-1095704 ( 73) GGCGCTCTCCCAACTGAGCTA 1 chrII:36190-36575 ( 73) GGCGCTCTCCCAACTGAGCTA 1 chrXVI:769016-769475 ( 80) AACGCTCTACCAACTGAGCTA 1 chrVII:115268-115755 ( 34) AACGCTCTACCAACTGAGCTA 1 chrIV:359336-359781 ( 76) AACGCTCTACCAACTGAGCTA 1 chrXVI:856770-857100 ( 24) AGCGCGCTACCGACTACGCCA 1 chrXIII:768180-768641 ( 54) AGCGCGCTACCGACTACGCCA 1 chrX:197164-197590 ( 31) AGCGCGCTACCGACTACGCCA 1 chrVI:204813-205202 ( 12) AGCGCGCTACCGACTACGCCA 1 chrXII:731908-732257 ( 65) ACGCCTTAAACCACTCGGCCA 1 chrIII:227785-228193 ( 10) CTCGCCTTAACCACTCGGCCA 1 chrXII:167702-168297 ( 49) TTCGCCTTAACCACTCGGCCA 1 chrX:523875-524330 ( 14) TTCGCCTTAACCACTCGGCCA 1 chrVIII:132743-133392 ( 63) TTCGCCTTAACCACTCGGCCA 1 chrIV:980773-981255 ( 64) TTCGCCTTAACCACTCGGCCA 1 chrIV:437526-438017 ( 58) TTCGCCTTAACCACTCGGCCA 1 chrII:226870-227377 ( 9) TTCGCCTTAACCACTCGGCCA 1 chrXI:83959-84439 ( 66) CCGCCTTAGACCACTCGGCCA 1 chrX:424325-424745 ( 3) CCGCCTTAGACCACTCGGCCA 1 chrIV:519558-519903 ( 70) CCGCCTTAGACCACTCGGCCA 1 chrXVI:581823-582318 ( 49) TACGCGCTACCGATTGCGCCA 1 chrXIII:480373-480923 ( 68) TACGCGCTACCGATTGCGCCA 1 chrVI:226573-226920 ( 37) TACGCGCTACCGATTGCGCCA 1 chrV:435637-436002 ( 28) TACGCGCTACCGATTGCGCCA 1 chrIV:1352326-1352721 ( 38) TACGCGCTACCGATTGCGCCA 1 chrIV:1201491-1202114 ( 5) TACGCGCTACCGATTGCGCCA 1 chrXV:663477-664232 ( 54) ATGCCATAACCGACTAGACCA 1 chrXIII:372193-372734 ( 78) ATGCCATAACCGACTAGACCA 1 chrXII:687649-688148 ( 57) ATGCCATAACCGACTAGACCA 1 chrXI:379466-379915 ( 47) ATGCCATAACCGACTAGACCA 1 chrXI:307972-308410 ( 49) ATGCCATAACCGACTAGACCA 1 chrVII:823285-823695 ( 49) ATGCCATAACCGACTAGACCA 1 chrVII:412157-412563 ( 30) ATGCCATAACCGACTAGACCA 1 chrXIII:572585-573310 ( 31) GACGCTCTTCCTACTGAGCTA 1 chrX:422585-423290 ( 57) GACGCTCTTCCTACTGAGCTA 1 chrX:390799-391318 ( 80) GACGCTCTTCCTACTGAGCTA 1 chrIV:1175596-1176073 ( 52) GACGCTCTTCCTACTGAGCTA 1 chrXIII:504669-505206 ( 15) GCGCCTTAGACCGCTCGGCCA 1 chrIV:1461489-1462198 ( 9) GCGCCTTAGACCGCTCGGCCA 1 chrXV:288016-288407 ( 38) CGCCTTAAACCAACTTGGCTA 1 chrXIII:168607-169032 ( 33) CGCCTTAAACCAACTTGGCTA 1 chrVI:210419-210925 ( 58) CGCCTTAAACCAACTTGGCTA 1 chrVI:167259-167711 ( 9) CGCCTTAAACCAACTTGGCTA 1 chrXII:605160-605633 ( 59) GAAGCTCTAACCACTGAGCTA 1 chrXII:489290-489534 ( 36) AGGCTCTTACCAGCTTAACTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNSSCTYWACCAACTKGGCCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 44160 bayes= 10.0928 E= 5.0e-251 5 -78 112 -95 -73 -8 80 -1 -453 167 107 -1285 -1285 126 157 -1285 -1285 232 -1285 -221 -173 12 -32 82 -254 97 -1285 89 46 -1285 -1285 85 130 -78 -146 -254 -63 210 -1285 -1285 -1285 242 -1285 -1285 71 12 30 -254 161 -1285 -220 -1285 -1285 230 -1285 -195 -1285 -1285 -1285 167 -108 2 117 -37 -45 -32 174 -1285 -154 -1285 226 -1285 -1285 242 -1285 -1285 -1285 194 -1285 -15 167 -1285 -1285 -1285 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNSSCTYWACCAACTKGGCCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 74 E= 5.0e-251 0.324324 0.108108 0.405405 0.162162 0.189189 0.175676 0.324324 0.310811 0.013514 0.594595 0.391892 0.000000 0.000000 0.445946 0.554054 0.000000 0.000000 0.932432 0.000000 0.067568 0.094595 0.202703 0.148649 0.554054 0.054054 0.364865 0.000000 0.581081 0.432432 0.000000 0.000000 0.567568 0.770270 0.108108 0.067568 0.054054 0.202703 0.797297 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.513514 0.202703 0.229730 0.054054 0.959459 0.000000 0.040541 0.000000 0.000000 0.918919 0.000000 0.081081 0.000000 0.000000 0.000000 1.000000 0.148649 0.189189 0.418919 0.243243 0.229730 0.148649 0.621622 0.000000 0.108108 0.000000 0.891892 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.716216 0.000000 0.283784 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNSSCTYWACCAACTKGGCCA MEME-2 regular expression -------------------------------------------------------------------------------- [GA][GT][CG][GC]C[TC][TC][TA]A[CA]C[AGC]ACT[GT][GA]GC[CT]A -------------------------------------------------------------------------------- Time 563.88 secs. ******************************************************************************** ******************************************************************************** MOTIF AASSGVVHVTBMTAACCAYTACACTATV MEME-3 width = 28 sites = 38 llr = 754 E-value = 2.0e-118 ******************************************************************************** -------------------------------------------------------------------------------- Motif AASSGVVHVTBMTAACCAYTACACTATV MEME-3 Description -------------------------------------------------------------------------------- Simplified A 98::13444:15:67::8::a37::924 pos.-specific C 1:45233321331::aa:4::61a2123 probability G :26362314242:23::2::::2::::3 matrix T :::221:2:72192::::6a:1::8:6: bits 2.4 ** * 2.2 ** * 1.9 ** * 1.7 ** ** * Relative 1.5 * * ** ** * Entropy 1.2 * * * ** ** *** (28.6 bits) 1.0 *** * * ******** *** 0.7 **** * * ************ 0.5 ***** * ** **************** 0.2 **************************** 0.0 ---------------------------- Multilevel AAGCGAAAATGATAACCATTACACTATA consensus GCGTCCCGGCC GG GC AG AC sequence GGTC T T CG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AASSGVVHVTBMTAACCAYTACACTATV MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------- chrV:130846-131430 + 33 1.18e-13 TTCGGATCAA AACCGAAAGTGATAACCACTACACTATA AAACCTCTTA chrIV:802543-802985 + 56 1.18e-13 TCCGGATCAA AACCGAAAGTGATAACCACTACACTATA GGACCGACAA chrIV:645003-645376 + 53 1.18e-13 TCCGGATCAA AACCGAAAGTGATAACCACTACACTATA GGACCGTAAC chrIV:520610-521414 - 15 1.18e-13 TCCGGATCAA AACCGAAAGTGATAACCACTACACTATA GGACCCTAAA chrIII:168135-168603 + 21 1.18e-13 TCCGGATCAA AACCGAAAGTGATAACCACTACACTATA GGACCAGGAC chrII:350566-351134 - 32 1.18e-13 TCCGGATCAA AACCGAAAGTGATAACCACTACACTATA AAACCCTTTT chrXV:571734-572150 - 71 4.77e-12 AC AAGCGCCCATTCTGACCATTAAACTATC ACGGATTTTA chrXIII:463315-463881 - 11 4.77e-12 GGCACGCGAC AAGCGCCCATTCTGACCATTAAACTATC ACGGACAAAT chrXII:426901-427446 - 14 4.77e-12 GGCACGCGAC AAGCGCCCATTCTGACCATTAAACTATC ACGGATAAGA chrX:355163-355749 - 55 4.77e-12 GGCACGCGAC AAGCGCCCATTCTGACCATTAAACTATC ACGGAAGAAA chrVII:544403-544927 + 1 4.77e-12 . AAGCGCCCATTCTGACCATTAAACTATC ACGGAAGAAA chrVII:531433-531792 - 53 4.77e-12 GGCACGCGAC AAGCGCCCATTCTGACCATTAAACTATC ACGGAAGTAA chrIX:336121-336635 + 60 4.77e-12 GGCACGCGAC AAGCGCCCATTCTGACCATTAAACTATC ACGGATTTGT chrIX:323969-324723 + 46 4.77e-12 GGCACGCGAC AAGCGCCCATTCTGACCATTAAACTATC ACGGAATATT chrIV:568690-569231 - 59 4.77e-12 GGCACGCGAC AAGCGCCCATTCTGACCATTAAACTATC ACGGAAGAAA chrVII:541606-542185 - 10 2.36e-10 CCACGGTGAA AGCGTGATGTGATAGCCGTTACACTATA TCGGATGGT chrVII:401395-401751 + 43 2.36e-10 CCACGGTGAA AGCGTGATGTGATAGCCGTTACACTATA TCGGAAACAA chrV:487211-487625 + 2 2.36e-10 A AGCGTGATGTGATAGCCGTTACACTATA TCGGATTAAA chrV:176815-177477 - 8 2.36e-10 CCACGGTGAA AGCGTGATGTGATAGCCGTTACACTATA TCGGATC chrII:644974-645416 - 27 2.36e-10 CCACGGTGAA AGCGTGATGTGATAGCCGTTACACTATA TCGGATAATA chrXV:110848-111246 + 4 2.64e-10 GGA AGGGTGGGATGATAACCACTACACTAAC CGCCCGGGTT chrXIV:96003-96605 + 26 2.64e-10 CCACCTTGGA AGGGTGGGATGATAACCACTACACTAAC CGCCCATGTG chrVII:779392-779915 - 18 2.64e-10 CCACCTTGGA AGGGTGGGATGATAACCACTACACTAAC CGCCCGGGGT chrIV:1075313-1075752 + 30 3.65e-10 TTGCCGTGTG AAGGCAACGTGATAGCCGCTACACTATT GGAACAATAT chrXIV:6516-7147 + 58 2.23e-09 TACTACCATC CACCGCCCATCATAACCGTTACCCTCCA ATTACCCAAA chrXIII:747782-748152 + 14 6.60e-09 TTCTGATTAG AAGTCAGACGCGTTGCCATTACGCCACG CGAGCTAGTC chrXI:162329-162716 + 54 6.60e-09 TTCTGATTAG AAGTCAGACGCGTTGCCATTACGCCACG CGAGCTAATA chrX:374207-374853 + 65 6.60e-09 TTCTGATTAG AAGTCAGACGCGTTGCCATTACGCCACG CGAGCTAC chrVII:405267-405734 - 25 6.60e-09 TTCTGATTAG AAGTCAGACGCGTTGCCATTACGCCACG CGAGCTACTG chrII:405576-406285 - 3 6.60e-09 TTCTGATTAG AAGTCAGACGCGTTGCCATTACGCCACG CG chrX:538354-538861 - 3 9.29e-09 TTCTCCTTAG GAGGGAGACGCGTTACCATTACGCCAAC GG chrXIII:362872-363340 - 13 1.33e-08 CATCGGCCAC AACGATGTGTACTAACCACTATACTAAG ATGGCAAACT chrVII:110411-110926 + 46 1.33e-08 CATCGGCCAC AACGATGTGTACTAACCACTATACTAAG ATGGCAGGTA chrV:434392-434755 + 57 1.33e-08 CATCGGCCAC AACGATGTGTACTAACCACTATACTAAG ATGGCGACTT chrXII:11035-11954 + 57 1.83e-08 TACCACTAAC CACCGTCCACCATAACCGTTACCCTCCA ATTACCCATA chrX:745260-745747 - 17 1.83e-08 TACTACCATC CACCGTCCACCATAACCGTTACCCTCCA ATTACCCATA chrVIII:466754-467326 - 5 2.43e-08 TTTGCATTAC AAGTGCAACGCTCTACCACTAAGCTAAG GAGG chrVII:1004035-1004419 - 44 2.43e-08 TTTGCATTAC AAGTGCAACGCTCTACCACTAAGCTAAG GAGGCAAACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AASSGVVHVTBMTAACCAYTACACTATV MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:130846-131430 1.2e-13 32_[+3]_40 chrIV:802543-802985 1.2e-13 55_[+3]_17 chrIV:645003-645376 1.2e-13 52_[+3]_20 chrIV:520610-521414 1.2e-13 14_[-3]_58 chrIII:168135-168603 1.2e-13 20_[+3]_52 chrII:350566-351134 1.2e-13 31_[-3]_41 chrXV:571734-572150 4.8e-12 70_[-3]_2 chrXIII:463315-463881 4.8e-12 10_[-3]_62 chrXII:426901-427446 4.8e-12 13_[-3]_59 chrX:355163-355749 4.8e-12 54_[-3]_18 chrVII:544403-544927 4.8e-12 [+3]_72 chrVII:531433-531792 4.8e-12 52_[-3]_20 chrIX:336121-336635 4.8e-12 59_[+3]_13 chrIX:323969-324723 4.8e-12 45_[+3]_27 chrIV:568690-569231 4.8e-12 58_[-3]_14 chrVII:541606-542185 2.4e-10 9_[-3]_63 chrVII:401395-401751 2.4e-10 42_[+3]_30 chrV:487211-487625 2.4e-10 1_[+3]_71 chrV:176815-177477 2.4e-10 7_[-3]_65 chrII:644974-645416 2.4e-10 26_[-3]_46 chrXV:110848-111246 2.6e-10 3_[+3]_69 chrXIV:96003-96605 2.6e-10 25_[+3]_47 chrVII:779392-779915 2.6e-10 17_[-3]_55 chrIV:1075313-1075752 3.7e-10 29_[+3]_43 chrXIV:6516-7147 2.2e-09 57_[+3]_15 chrXIII:747782-748152 6.6e-09 13_[+3]_59 chrXI:162329-162716 6.6e-09 53_[+3]_19 chrX:374207-374853 6.6e-09 64_[+3]_8 chrVII:405267-405734 6.6e-09 24_[-3]_48 chrII:405576-406285 6.6e-09 2_[-3]_70 chrX:538354-538861 9.3e-09 2_[-3]_70 chrXIII:362872-363340 1.3e-08 12_[-3]_60 chrVII:110411-110926 1.3e-08 45_[+3]_27 chrV:434392-434755 1.3e-08 56_[+3]_16 chrXII:11035-11954 1.8e-08 56_[+3]_16 chrX:745260-745747 1.8e-08 16_[-3]_56 chrVIII:466754-467326 2.4e-08 4_[-3]_68 chrVII:1004035-1004419 2.4e-08 43_[-3]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AASSGVVHVTBMTAACCAYTACACTATV MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AASSGVVHVTBMTAACCAYTACACTATV width=28 seqs=38 chrV:130846-131430 ( 33) AACCGAAAGTGATAACCACTACACTATA 1 chrIV:802543-802985 ( 56) AACCGAAAGTGATAACCACTACACTATA 1 chrIV:645003-645376 ( 53) AACCGAAAGTGATAACCACTACACTATA 1 chrIV:520610-521414 ( 15) AACCGAAAGTGATAACCACTACACTATA 1 chrIII:168135-168603 ( 21) AACCGAAAGTGATAACCACTACACTATA 1 chrII:350566-351134 ( 32) AACCGAAAGTGATAACCACTACACTATA 1 chrXV:571734-572150 ( 71) AAGCGCCCATTCTGACCATTAAACTATC 1 chrXIII:463315-463881 ( 11) AAGCGCCCATTCTGACCATTAAACTATC 1 chrXII:426901-427446 ( 14) AAGCGCCCATTCTGACCATTAAACTATC 1 chrX:355163-355749 ( 55) AAGCGCCCATTCTGACCATTAAACTATC 1 chrVII:544403-544927 ( 1) AAGCGCCCATTCTGACCATTAAACTATC 1 chrVII:531433-531792 ( 53) AAGCGCCCATTCTGACCATTAAACTATC 1 chrIX:336121-336635 ( 60) AAGCGCCCATTCTGACCATTAAACTATC 1 chrIX:323969-324723 ( 46) AAGCGCCCATTCTGACCATTAAACTATC 1 chrIV:568690-569231 ( 59) AAGCGCCCATTCTGACCATTAAACTATC 1 chrVII:541606-542185 ( 10) AGCGTGATGTGATAGCCGTTACACTATA 1 chrVII:401395-401751 ( 43) AGCGTGATGTGATAGCCGTTACACTATA 1 chrV:487211-487625 ( 2) AGCGTGATGTGATAGCCGTTACACTATA 1 chrV:176815-177477 ( 8) AGCGTGATGTGATAGCCGTTACACTATA 1 chrII:644974-645416 ( 27) AGCGTGATGTGATAGCCGTTACACTATA 1 chrXV:110848-111246 ( 4) AGGGTGGGATGATAACCACTACACTAAC 1 chrXIV:96003-96605 ( 26) AGGGTGGGATGATAACCACTACACTAAC 1 chrVII:779392-779915 ( 18) AGGGTGGGATGATAACCACTACACTAAC 1 chrIV:1075313-1075752 ( 30) AAGGCAACGTGATAGCCGCTACACTATT 1 chrXIV:6516-7147 ( 58) CACCGCCCATCATAACCGTTACCCTCCA 1 chrXIII:747782-748152 ( 14) AAGTCAGACGCGTTGCCATTACGCCACG 1 chrXI:162329-162716 ( 54) AAGTCAGACGCGTTGCCATTACGCCACG 1 chrX:374207-374853 ( 65) AAGTCAGACGCGTTGCCATTACGCCACG 1 chrVII:405267-405734 ( 25) AAGTCAGACGCGTTGCCATTACGCCACG 1 chrII:405576-406285 ( 3) AAGTCAGACGCGTTGCCATTACGCCACG 1 chrX:538354-538861 ( 3) GAGGGAGACGCGTTACCATTACGCCAAC 1 chrXIII:362872-363340 ( 13) AACGATGTGTACTAACCACTATACTAAG 1 chrVII:110411-110926 ( 46) AACGATGTGTACTAACCACTATACTAAG 1 chrV:434392-434755 ( 57) AACGATGTGTACTAACCACTATACTAAG 1 chrXII:11035-11954 ( 57) CACCGTCCACCATAACCGTTACCCTCCA 1 chrX:745260-745747 ( 17) CACCGTCCACCATAACCGTTACCCTCCA 1 chrVIII:466754-467326 ( 5) AAGTGCAACGCTCTACCACTAAGCTAAG 1 chrVII:1004035-1004419 ( 44) AAGTGCAACGCTCTACCACTAAGCTAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AASSGVVHVTBMTAACCAYTACACTATV MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 40296 bayes= 9.4185 E= 2.0e-118 151 -124 -282 -1189 133 -1189 18 -1189 -1189 126 157 -1189 -1189 135 88 -77 -199 -24 157 -58 12 76 18 -125 23 76 76 -1189 23 88 -124 -58 33 18 108 -1189 -1189 -182 18 123 -199 64 108 -41 59 76 -24 -257 -1189 -182 -1189 159 82 -1189 35 -58 118 -1189 64 -1189 -1189 242 -1189 -1189 -1189 242 -1189 -1189 128 -1189 35 -1189 -1189 108 -1189 95 -1189 -1189 -1189 167 167 -1189 -1189 -1189 -12 176 -1189 -199 118 -124 18 -1189 -1189 242 -1189 -1189 -1189 -24 -1189 142 155 -124 -1189 -1189 -41 18 -1189 82 23 88 50 -357 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AASSGVVHVTBMTAACCAYTACACTATV MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 38 E= 2.0e-118 0.894737 0.078947 0.026316 0.000000 0.789474 0.000000 0.210526 0.000000 0.000000 0.447368 0.552632 0.000000 0.000000 0.473684 0.342105 0.184211 0.078947 0.157895 0.552632 0.210526 0.342105 0.315789 0.210526 0.131579 0.368421 0.315789 0.315789 0.000000 0.368421 0.342105 0.078947 0.210526 0.394737 0.210526 0.394737 0.000000 0.000000 0.052632 0.210526 0.736842 0.078947 0.289474 0.394737 0.236842 0.473684 0.315789 0.157895 0.052632 0.000000 0.052632 0.000000 0.947368 0.552632 0.000000 0.236842 0.210526 0.710526 0.000000 0.289474 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.763158 0.000000 0.236842 0.000000 0.000000 0.394737 0.000000 0.605263 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.289474 0.631579 0.000000 0.078947 0.710526 0.078947 0.210526 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.157895 0.000000 0.842105 0.921053 0.078947 0.000000 0.000000 0.236842 0.210526 0.000000 0.552632 0.368421 0.342105 0.263158 0.026316 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AASSGVVHVTBMTAACCAYTACACTATV MEME-3 regular expression -------------------------------------------------------------------------------- A[AG][GC][CG][GT][ACG][ACG][ACT][AGC][TG][GCT][AC]T[AGT][AG]CC[AG][TC]TA[CA][AG]CTA[TAC][ACG] -------------------------------------------------------------------------------- Time 822.86 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:4-1061 1.44e-02 67_[-2(3.24e-05)]_12 chrI:71790-73666 5.39e-01 100 chrI:81862-82267 7.24e-02 100 chrI:138959-139327 1.25e-02 100 chrI:141566-143762 2.16e-01 100 chrI:151583-151969 3.47e-01 100 chrI:160012-160270 4.48e-01 100 chrI:166067-166572 4.37e-16 4_[-2(1.33e-10)]_15_[+1(2.06e-11)]_\ 39 chrI:180923-181480 3.54e-01 100 chrI:182318-182759 1.74e-04 42_[-1(1.83e-07)]_37 chrI:229267-230194 1.44e-01 100 chrII:9375-9989 2.45e-03 4_[+1(9.01e-07)]_75 chrII:36190-36575 5.31e-06 72_[-2(1.02e-09)]_7 chrII:44952-45321 7.26e-01 100 chrII:60104-61278 7.43e-01 100 chrII:87929-88558 6.73e-01 100 chrII:88951-89522 8.97e-01 100 chrII:89702-90019 7.88e-01 100 chrII:165099-165428 2.45e-02 100 chrII:167545-168199 7.19e-01 100 chrII:181333-181602 7.23e-01 100 chrII:197202-197862 7.48e-15 18_[-2(7.88e-12)]_16_[+1(1.58e-10)]_\ 24 chrII:226870-227377 4.98e-10 8_[-2(3.68e-09)]_24_[+1(1.83e-07)]_\ 26 chrII:265974-266696 3.07e-01 100 chrII:301127-301601 4.15e-01 100 chrII:326538-327173 2.23e-03 32_[+2(3.95e-05)]_47 chrII:332322-332850 8.97e-01 100 chrII:347400-348123 6.71e-01 100 chrII:350566-351134 5.28e-18 31_[-3(1.18e-13)]_9_[+1(9.45e-10)]_\ 11 chrII:373546-375811 8.86e-01 100 chrII:405576-406285 1.12e-10 2_[-3(6.60e-09)]_9_[+1(4.21e-09)]_\ 40 chrII:415539-415859 4.48e-01 100 chrII:444750-445010 6.59e-01 100 chrII:477101-477777 1.63e-01 100 chrII:478979-479513 8.68e-01 100 chrII:592329-593253 1.67e-01 35_[-2(9.78e-05)]_44 chrII:604084-606111 9.30e-01 100 chrII:642885-643359 7.56e-01 100 chrII:644974-645416 6.85e-13 26_[-3(2.36e-10)]_9_[+1(1.08e-09)]_\ 16 chrII:680413-682181 6.16e-01 100 chrII:813009-813182 1.94e-02 100 chrIII:4-1455 6.60e-01 100 chrIII:30581-31218 4.42e-01 100 chrIII:82396-82752 6.75e-01 100 chrIII:123392-123794 5.83e-10 42_[-1(1.47e-13)]_37 chrIII:127541-127886 2.40e-06 59_[-2(2.16e-10)]_20 chrIII:142150-142967 6.83e-01 100 chrIII:162012-163147 9.68e-01 100 chrIII:163311-163879 1.41e-01 100 chrIII:168135-168603 1.70e-12 20_[+3(1.18e-13)]_52 chrIII:177088-178791 9.54e-01 100 chrIII:227785-228193 1.29e-09 9_[-2(3.31e-09)]_43_[+1(7.35e-07)]_\ 6 chrIII:294968-295976 6.76e-08 68_[-2(1.01e-11)]_11 chrIII:315667-316618 3.94e-01 100 chrIV:20-356 7.79e-03 10_[+3(3.28e-05)]_62 chrIV:83322-83811 1.84e-10 38_[-2(1.92e-05)]_13_[+1(3.13e-11)]_\ 7 chrIV:116384-118206 2.05e-01 100 chrIV:129906-131000 8.10e-01 100 chrIV:216984-218073 8.87e-01 100 chrIV:220979-222328 5.51e-01 100 chrIV:229427-230745 9.71e-01 100 chrIV:308031-310179 4.37e-01 100 chrIV:321635-321928 3.73e-01 100 chrIV:322202-323651 3.26e-01 100 chrIV:339583-341646 4.96e-01 100 chrIV:358025-358519 8.55e-01 100 chrIV:359336-359781 1.78e-05 75_[-2(1.48e-09)]_4 chrIV:410178-410728 2.20e-07 18_[+1(9.44e-11)]_61 chrIV:411280-411648 3.47e-01 100 chrIV:415855-416813 6.36e-01 100 chrIV:434062-434539 7.83e-13 22_[-1(1.37e-08)]_15_[+2(1.01e-11)]_\ 21 chrIV:437526-438017 5.90e-06 57_[-2(3.68e-09)]_22 chrIV:448836-450111 9.92e-01 100 chrIV:465242-465774 4.65e-01 100 chrIV:488449-489140 2.38e-05 61_[-1(4.21e-09)]_18 chrIV:490505-491243 9.89e-01 100 chrIV:519558-519903 7.13e-06 69_[-2(2.59e-08)]_10 chrIV:520610-521414 5.28e-18 14_[-3(1.18e-13)]_9_[+1(9.45e-10)]_\ 28 chrIV:539001-539224 5.49e-02 48_[+1(5.18e-05)]_31 chrIV:541145-541916 2.18e-01 100 chrIV:568690-569231 5.25e-15 13_[+1(4.21e-09)]_24_[-3(4.77e-12)]_\ 14 chrIV:578944-581079 9.98e-02 18_[+2(4.91e-05)]_61 chrIV:581374-581597 9.95e-01 100 chrIV:619685-620264 3.76e-04 53_[-1(6.37e-08)]_26 chrIV:645003-645376 5.28e-18 22_[-1(9.45e-10)]_9_[+3(1.18e-13)]_\ 20 chrIV:667767-668239 2.58e-06 62_[-1(1.58e-10)]_17 chrIV:802543-802985 5.28e-18 25_[-1(9.45e-10)]_9_[+3(1.18e-13)]_\ 17 chrIV:835779-836231 3.49e-01 100 chrIV:884214-884638 4.03e-01 100 chrIV:946149-946600 1.30e-05 46_[+1(4.19e-08)]_33 chrIV:980773-981255 4.98e-10 18_[-1(1.83e-07)]_24_[+2(3.68e-09)]_\ 16 chrIV:992614-993045 2.53e-03 59_[-2(1.92e-05)]_20 chrIV:1012770-1013937 9.21e-01 100 chrIV:1016919-1017484 6.81e-06 64_[-1(1.08e-09)]_15 chrIV:1075313-1075752 1.55e-07 29_[+3(3.65e-10)]_43 chrIV:1095118-1095704 5.77e-10 17_[-1(1.96e-07)]_34_[+2(1.02e-09)]_\ 7 chrIV:1150111-1151167 8.75e-01 100 chrIV:1175596-1176073 5.92e-05 51_[-2(5.52e-08)]_28 chrIV:1201491-1202114 7.41e-12 4_[-2(2.80e-08)]_15_[+1(2.56e-10)]_\ 39 chrIV:1233417-1234274 7.75e-01 100 chrIV:1256867-1257269 3.26e-05 28_[+3(6.62e-07)]_44 chrIV:1269937-1271043 3.52e-02 15_[-2(4.65e-05)]_64 chrIV:1278604-1279014 3.49e-01 100 chrIV:1300896-1301311 6.97e-01 100 chrIV:1305015-1306581 6.71e-01 100 chrIV:1352326-1352721 7.41e-12 1_[-1(2.56e-10)]_15_[+2(2.80e-08)]_\ 42 chrIV:1355745-1355999 9.13e-01 100 chrIV:1359181-1361164 9.52e-01 100 chrIV:1401255-1402032 8.34e-01 100 chrIV:1402190-1403391 8.93e-01 100 chrIV:1449792-1451372 6.86e-01 100 chrIV:1461489-1462198 2.90e-04 8_[+2(6.80e-08)]_71 chrIV:1492178-1493044 4.41e-02 100 chrIV:1524134-1525643 1.38e-02 17_[+2(3.24e-05)]_62 chrIX:1-239 9.09e-01 100 chrIX:68228-68497 8.83e-01 100 chrIX:99649-100014 4.57e-01 100 chrIX:174840-175241 9.15e-08 47_[-2(1.01e-11)]_32 chrIX:183064-183709 7.04e-01 100 chrIX:197375-197983 4.72e-07 4_[+1(1.08e-09)]_75 chrIX:210525-210976 2.18e-06 8_[+1(1.58e-10)]_71 chrIX:248628-249279 4.14e-01 100 chrIX:254253-254528 2.34e-01 100 chrIX:257396-258169 7.48e-01 100 chrIX:300018-300858 4.52e-02 100 chrIX:316143-316576 9.42e-02 100 chrIX:323969-324723 5.47e-14 15_[-1(4.97e-08)]_9_[+3(4.77e-12)]_\ 27 chrIX:325492-326094 7.83e-13 11_[-2(1.01e-11)]_15_[+1(1.37e-08)]_\ 32 chrIX:336121-336635 5.47e-14 29_[-1(4.97e-08)]_9_[+3(4.77e-12)]_\ 13 chrIX:370161-370616 8.39e-01 100 chrIX:438455-439885 5.15e-01 100 chrV:6168-6942 9.76e-01 100 chrV:53547-54186 9.16e-01 100 chrV:60983-62160 6.04e-01 100 chrV:67135-69324 5.60e-01 100 chrV:85152-85438 3.61e-01 100 chrV:85716-86899 9.80e-01 100 chrV:99705-100338 7.03e-01 100 chrV:117644-118306 9.50e-01 100 chrV:130846-131430 5.28e-18 2_[-1(9.45e-10)]_9_[+3(1.18e-13)]_\ 40 chrV:135055-135688 1.49e-02 100 chrV:138224-140877 1.32e-04 6_[-3(3.99e-05)]_33_[-1(2.14e-05)]_\ 12 chrV:152081-152702 8.73e-01 100 chrV:166706-167658 3.61e-01 100 chrV:176815-177477 6.85e-13 7_[-3(2.36e-10)]_9_[+1(1.08e-09)]_\ 35 chrV:207110-207841 6.85e-01 100 chrV:225482-225660 3.49e-01 100 chrV:250120-251046 8.92e-01 100 chrV:288170-288727 1.83e-03 53_[-1(7.35e-07)]_26 chrV:303968-306911 4.01e-01 100 chrV:311764-312297 3.26e-07 51_[-1(2.06e-11)]_28 chrV:321985-323123 7.11e-01 100 chrV:354683-355381 5.12e-01 100 chrV:362154-362465 6.96e-01 100 chrV:396202-396562 9.07e-01 100 chrV:423095-425298 1.03e-01 100 chrV:430984-431554 1.33e-01 100 chrV:434392-434755 2.46e-09 26_[-1(4.46e-07)]_9_[+3(1.33e-08)]_\ 16 chrV:435637-436002 1.54e-05 27_[+2(2.80e-08)]_52 chrV:438276-439002 3.35e-01 100 chrV:441766-442645 3.04e-01 100 chrV:443029-443504 7.04e-08 31_[+2(7.88e-12)]_48 chrV:469262-469777 2.51e-05 31_[+1(2.64e-09)]_48 chrV:487211-487625 9.18e-07 1_[+3(2.36e-10)]_71 chrV:492229-492705 1.78e-01 100 chrV:551067-551567 7.48e-15 26_[-1(1.58e-10)]_16_[+2(7.88e-12)]_\ 16 chrVI:4481-5415 1.67e-02 7_[+3(7.97e-05)]_65 chrVI:63974-65369 4.96e-01 100 chrVI:82582-84694 5.94e-01 100 chrVI:95498-95853 5.81e-02 100 chrVI:101059-101734 1.25e-02 100 chrVI:136966-137904 7.36e-01 100 chrVI:157554-158441 6.54e-06 32_[+2(1.02e-09)]_47 chrVI:162019-162475 1.84e-10 37_[-2(1.92e-05)]_13_[+1(3.13e-11)]_\ 8 chrVI:167259-167711 2.58e-09 8_[-2(9.48e-08)]_31_[+1(4.19e-08)]_\ 19 chrVI:180596-181251 6.23e-01 100 chrVI:191005-191793 5.88e-01 100 chrVI:204813-205202 6.06e-10 11_[+2(1.67e-09)]_68 chrVI:210419-210925 2.58e-09 5_[-1(4.19e-08)]_31_[+2(9.48e-08)]_\ 22 chrVI:221779-222046 4.82e-01 100 chrVI:223926-224139 7.42e-01 100 chrVI:226573-226920 7.41e-12 [-1(2.56e-10)]_15_[+2(2.80e-08)]_43 chrVI:269895-270159 3.16e-01 100 chrVII:18-960 6.26e-01 100 chrVII:73747-74184 2.02e-01 100 chrVII:110411-110926 2.46e-09 15_[-1(4.46e-07)]_9_[+3(1.33e-08)]_\ 27 chrVII:115268-115755 1.87e-07 33_[-2(1.48e-09)]_46 chrVII:122028-122809 8.59e-01 100 chrVII:147947-149464 5.21e-01 100 chrVII:185253-186076 7.91e-01 100 chrVII:205080-206268 1.59e-01 100 chrVII:254155-254709 6.16e-01 100 chrVII:255195-255635 1.32e-01 100 chrVII:276965-278695 3.96e-02 100 chrVII:287147-287864 4.47e-01 100 chrVII:310397-312290 9.72e-01 100 chrVII:319611-320154 1.26e-01 100 chrVII:328362-329285 9.56e-01 100 chrVII:345849-346644 2.03e-01 100 chrVII:364872-366714 9.95e-01 100 chrVII:371250-371470 1.17e-01 100 chrVII:401395-401751 6.85e-13 12_[-1(1.08e-09)]_9_[+3(2.36e-10)]_\ 30 chrVII:405267-405734 1.12e-10 24_[-3(6.60e-09)]_9_[+1(4.21e-09)]_\ 18 chrVII:412157-412563 7.43e-05 29_[+2(4.44e-08)]_50 chrVII:422893-423546 9.17e-02 100 chrVII:438610-439974 6.48e-02 78_[+1(3.30e-05)]_1 chrVII:440493-443076 6.18e-01 100 chrVII:479158-482780 3.23e-03 100 chrVII:531433-531792 5.57e-11 23_[-1(7.81e-05)]_8_[-3(4.77e-12)]_\ 20 chrVII:533536-535221 9.69e-01 100 chrVII:535466-535808 6.93e-01 100 chrVII:541606-542185 6.85e-13 9_[-3(2.36e-10)]_9_[+1(1.08e-09)]_\ 33 chrVII:544403-544927 3.22e-09 [+3(4.77e-12)]_72 chrVII:545085-546115 1.75e-01 100 chrVII:555186-556424 5.02e-01 100 chrVII:560965-561932 5.05e-01 100 chrVII:609301-609970 7.71e-01 100 chrVII:648165-648476 8.19e-01 100 chrVII:648770-649436 7.22e-01 100 chrVII:661483-661934 6.14e-01 100 chrVII:700134-701603 9.99e-01 100 chrVII:706928-707334 1.94e-05 35_[-1(5.01e-07)]_44 chrVII:726188-726771 1.48e-01 100 chrVII:730951-731423 3.49e-11 6_[-2(2.16e-10)]_16_[+1(1.10e-07)]_\ 36 chrVII:736203-736815 1.00e+00 100 chrVII:738834-739498 7.48e-15 12_[-2(7.88e-12)]_16_[+1(1.58e-10)]_\ 30 chrVII:771822-772262 3.74e-01 100 chrVII:773890-774614 7.20e-01 100 chrVII:779392-779915 1.87e-14 17_[-3(2.64e-10)]_9_[+1(6.23e-10)]_\ 25 chrVII:788331-788745 7.83e-01 100 chrVII:794191-794791 3.31e-07 18_[+1(2.06e-11)]_61 chrVII:823285-823695 7.43e-05 48_[-2(4.44e-08)]_31 chrVII:828474-828973 2.37e-05 58_[-1(4.21e-09)]_21 chrVII:845281-845936 4.71e-01 100 chrVII:856767-856962 3.37e-02 100 chrVII:857214-857647 3.19e-01 100 chrVII:876172-876857 8.91e-01 100 chrVII:878633-879060 5.48e-01 100 chrVII:882361-884038 4.60e-01 100 chrVII:914862-915228 4.29e-01 100 chrVII:930793-931220 1.84e-10 5_[-1(3.13e-11)]_13_[+2(1.92e-05)]_\ 40 chrVII:1004035-1004419 1.80e-05 43_[-3(2.43e-08)]_29 chrVIII:34448-36111 2.52e-01 100 chrVIII:62295-63034 9.98e-01 100 chrVIII:74935-76489 5.97e-03 100 chrVIII:85042-85508 6.63e-01 100 chrVIII:103856-104811 3.01e-02 100 chrVIII:105034-105543 5.45e-02 100 chrVIII:115568-116541 9.72e-01 100 chrVIII:125913-126303 8.12e-01 100 chrVIII:132743-133392 4.98e-10 17_[-1(1.83e-07)]_24_[+2(3.68e-09)]_\ 17 chrVIII:133565-134641 5.47e-01 100 chrVIII:145906-146431 7.22e-01 100 chrVIII:147662-148748 8.47e-01 100 chrVIII:148966-149324 9.94e-01 100 chrVIII:175045-175418 1.38e-01 100 chrVIII:237756-238127 4.42e-06 20_[+2(1.02e-09)]_59 chrVIII:296803-297228 1.99e-01 100 chrVIII:358208-358819 1.49e-09 23_[-1(1.96e-07)]_34_[+2(1.02e-09)]_\ 1 chrVIII:375349-376327 6.93e-01 100 chrVIII:381462-383482 8.95e-01 100 chrVIII:388648-389220 6.68e-06 17_[-1(2.33e-09)]_62 chrVIII:410971-412009 1.83e-01 100 chrVIII:451394-453208 2.45e-02 100 chrVIII:466754-467326 1.11e-09 4_[-3(2.43e-08)]_9_[+1(5.87e-08)]_\ 38 chrVIII:475455-475902 5.16e-01 100 chrVIII:488104-488642 9.29e-01 100 chrVIII:505844-506176 8.19e-01 100 chrVIII:517796-518991 9.07e-01 100 chrVIII:555939-557179 1.19e-01 100 chrVIII:562282-562579 5.20e-01 100 chrX:58997-59434 3.93e-01 100 chrX:73367-75716 5.82e-02 100 chrX:75910-76773 6.61e-01 100 chrX:90046-90412 9.59e-01 100 chrX:115509-116229 1.21e-01 100 chrX:139150-141347 9.46e-01 100 chrX:157450-157934 6.76e-01 100 chrX:197164-197590 1.67e-08 30_[+2(1.67e-09)]_49 chrX:204347-205003 9.31e-01 100 chrX:227759-228669 2.54e-01 100 chrX:233692-234710 9.87e-02 4_[-2(5.46e-05)]_75 chrX:354027-354593 4.33e-04 42_[+1(4.19e-08)]_37 chrX:355163-355749 5.25e-15 9_[+1(4.21e-09)]_24_[-3(4.77e-12)]_\ 18 chrX:374207-374853 1.12e-10 34_[-1(4.21e-09)]_9_[+3(6.60e-09)]_\ 8 chrX:378000-378566 9.74e-01 100 chrX:390799-391318 3.67e-08 43_[-1(1.71e-07)]_15_[+2(5.52e-08)] chrX:391862-392087 3.20e-01 100 chrX:396540-397087 2.53e-03 5_[+2(1.92e-05)]_74 chrX:414792-415291 2.64e-07 17_[+1(2.56e-10)]_62 chrX:415735-416284 7.73e-04 44_[+3(3.77e-06)]_28 chrX:422585-423290 1.04e-04 56_[-2(5.52e-08)]_23 chrX:424325-424745 2.54e-05 2_[+2(2.59e-08)]_77 chrX:440405-441474 9.48e-01 100 chrX:517634-518115 4.46e-02 100 chrX:523875-524330 7.39e-07 13_[+2(3.68e-09)]_20_[-3(6.30e-05)]_\ 18 chrX:531566-532205 3.19e-07 33_[+1(3.13e-11)]_46 chrX:538354-538861 1.51e-11 2_[-3(9.29e-09)]_9_[+1(1.59e-09)]_\ 40 chrX:541326-541815 9.26e-05 29_[+1(4.97e-08)]_50 chrX:542798-543566 9.95e-01 100 chrX:607679-608140 3.45e-01 100 chrX:617765-618238 1.20e-01 100 chrX:651174-651587 8.91e-01 100 chrX:663688-664398 4.45e-01 100 chrX:703275-703623 9.89e-01 100 chrX:745260-745747 1.24e-04 16_[-3(1.83e-08)]_56 chrXI:0-1090 2.52e-03 60_[-2(1.86e-05)]_19 chrXI:46647-47020 3.89e-01 100 chrXI:67800-68339 9.31e-01 100 chrXI:74412-75035 5.66e-01 100 chrXI:83959-84439 7.13e-06 65_[-2(2.59e-08)]_14 chrXI:108138-109052 9.91e-01 100 chrXI:140645-142157 3.44e-01 100 chrXI:158173-159666 9.25e-01 100 chrXI:162329-162716 1.12e-10 23_[-1(4.21e-09)]_9_[+3(6.60e-09)]_\ 19 chrXI:202838-203313 4.91e-07 16_[+1(2.56e-10)]_63 chrXI:219538-220078 9.22e-01 100 chrXI:302696-303452 8.94e-01 100 chrXI:307972-308410 1.93e-10 11_[-1(2.64e-09)]_16_[+2(4.44e-08)]_\ 31 chrXI:312614-313692 7.75e-01 100 chrXI:322445-322675 2.94e-01 100 chrXI:325829-327478 6.82e-02 100 chrXI:333602-334875 9.97e-01 100 chrXI:379466-379915 4.99e-05 46_[-2(4.44e-08)]_33 chrXI:382246-382430 3.82e-03 52_[+3(6.81e-05)]_20 chrXI:430752-431639 8.28e-01 100 chrXI:458389-459070 7.67e-01 100 chrXI:490486-491359 7.21e-01 100 chrXI:513228-513654 6.03e-01 100 chrXI:517778-518099 9.72e-01 100 chrXI:578788-579334 1.20e-06 19_[+1(2.33e-09)]_23_[+1(3.30e-05)]_\ 16 chrXI:617702-619284 9.89e-01 100 chrXI:665298-665455 8.22e-01 100 chrXI:665622-666805 1.60e-01 100 chrXII:6-252 9.48e-01 100 chrXII:5483-5917 2.52e-01 100 chrXII:11035-11954 5.65e-05 56_[+3(1.83e-08)]_16 chrXII:48726-49112 7.13e-01 100 chrXII:84182-84440 5.80e-01 100 chrXII:92300-93479 6.17e-02 100 chrXII:97163-97857 9.41e-01 100 chrXII:167702-168297 4.98e-10 3_[-1(1.83e-07)]_24_[+2(3.68e-09)]_\ 31 chrXII:198611-199728 9.07e-02 100 chrXII:209837-210594 3.53e-01 100 chrXII:214582-215146 5.99e-07 77_[-1(2.06e-11)]_2 chrXII:231988-234217 3.62e-01 100 chrXII:241354-241979 1.20e-01 100 chrXII:262870-263958 1.64e-01 100 chrXII:282547-283874 7.54e-01 100 chrXII:348113-348697 9.55e-01 100 chrXII:366017-366593 4.56e-01 100 chrXII:369088-370228 9.98e-01 100 chrXII:370555-370902 3.48e-01 100 chrXII:374214-374664 3.54e-04 8_[+1(6.37e-08)]_71 chrXII:424199-424432 4.49e-01 100 chrXII:426901-427446 5.47e-14 13_[-3(4.77e-12)]_9_[+1(4.97e-08)]_\ 29 chrXII:448504-448985 4.91e-01 100 chrXII:459653-460673 4.29e-01 100 chrXII:489290-489534 7.54e-05 35_[-2(8.51e-07)]_44 chrXII:498302-499733 8.68e-01 100 chrXII:592131-593169 3.21e-01 100 chrXII:605160-605633 9.70e-08 58_[+2(1.64e-07)]_21 chrXII:628011-628622 9.60e-01 100 chrXII:636730-640190 4.77e-02 100 chrXII:651042-651246 7.72e-01 100 chrXII:656711-657177 8.26e-07 48_[-1(9.44e-11)]_31 chrXII:673213-675143 2.37e-01 100 chrXII:687649-688148 1.93e-10 19_[-1(2.64e-09)]_16_[+2(4.44e-08)]_\ 23 chrXII:710346-710937 4.33e-01 100 chrXII:712055-713561 4.99e-01 100 chrXII:731908-732257 3.63e-06 64_[-2(2.97e-09)]_15 chrXII:734710-735288 9.42e-01 100 chrXII:780695-781872 5.45e-02 100 chrXII:784116-784537 1.55e-01 100 chrXII:793706-795395 4.84e-01 100 chrXII:795585-797388 2.93e-01 100 chrXII:805428-807167 3.44e-01 100 chrXII:818249-820514 2.09e-01 100 chrXII:837650-839221 1.76e-02 60_[+3(5.84e-05)]_12 chrXII:855794-857675 5.10e-01 100 chrXII:875193-875694 9.09e-07 48_[+1(2.33e-09)]_31 chrXII:897676-898301 8.67e-01 100 chrXII:898541-899711 5.22e-01 100 chrXII:903389-903694 6.14e-01 100 chrXII:921257-921443 1.28e-01 100 chrXII:921723-922572 5.73e-02 100 chrXII:932098-932523 9.74e-01 100 chrXII:962840-963370 3.18e-01 100 chrXII:975761-976290 3.49e-11 16_[-1(1.10e-07)]_16_[+2(2.16e-10)]_\ 26 chrXII:1017675-1019427 2.75e-01 100 chrXII:1028164-1028553 9.87e-01 100 chrXII:1051896-1052386 6.76e-08 25_[+2(7.88e-12)]_54 chrXII:1064076-1065346 3.87e-01 100 chrXIII:5339-5779 9.60e-02 100 chrXIII:23633-25889 3.58e-01 100 chrXIII:91635-92068 7.43e-01 100 chrXIII:122933-124750 3.42e-01 100 chrXIII:131355-132111 6.28e-01 100 chrXIII:145917-146268 1.90e-02 56_[+2(7.90e-05)]_23 chrXIII:161823-164339 2.60e-02 100 chrXIII:168607-169032 6.11e-05 32_[-2(9.48e-08)]_47 chrXIII:183786-184163 2.53e-03 16_[+2(1.92e-05)]_63 chrXIII:195929-196400 1.25e-02 100 chrXIII:224093-224326 6.20e-01 100 chrXIII:225327-226707 2.01e-01 100 chrXIII:259026-259766 8.76e-01 100 chrXIII:267623-268851 3.71e-01 100 chrXIII:290123-291182 1.42e-02 100 chrXIII:296625-298925 6.66e-01 100 chrXIII:302866-303092 3.27e-01 100 chrXIII:321001-321320 8.26e-07 45_[-1(9.44e-11)]_34 chrXIII:352088-352502 6.13e-06 41_[-2(1.02e-09)]_38 chrXIII:362872-363340 2.46e-09 12_[-3(1.33e-08)]_9_[+1(4.46e-07)]_\ 30 chrXIII:372193-372734 1.93e-10 40_[-1(2.64e-09)]_16_[+2(4.44e-08)]_\ 2 chrXIII:378621-379603 3.50e-01 100 chrXIII:420341-420840 6.73e-06 56_[-1(2.64e-09)]_23 chrXIII:463315-463881 5.47e-14 10_[-3(4.77e-12)]_9_[+1(4.97e-08)]_\ 32 chrXIII:480373-480923 7.41e-12 31_[-1(2.56e-10)]_15_[+2(2.80e-08)]_\ 12 chrXIII:504669-505206 2.90e-04 14_[-2(6.80e-08)]_65 chrXIII:551378-553265 9.04e-01 100 chrXIII:572585-573310 4.84e-05 30_[+2(5.52e-08)]_49 chrXIII:586377-586910 2.66e-05 51_[-1(2.64e-09)]_28 chrXIII:626183-627053 5.75e-01 100 chrXIII:631754-634930 7.55e-01 100 chrXIII:650704-652934 5.03e-01 100 chrXIII:732020-733582 2.08e-01 100 chrXIII:747782-748152 8.42e-06 13_[+3(6.60e-09)]_59 chrXIII:754437-754880 6.15e-01 100 chrXIII:760393-763086 8.20e-01 100 chrXIII:768180-768641 9.38e-16 17_[-1(9.44e-11)]_15_[+2(1.67e-09)]_\ 26 chrXIII:807631-808553 9.83e-01 100 chrXIII:837694-838469 9.66e-01 100 chrXIII:861201-861515 5.94e-01 100 chrXIII:872680-872917 2.32e-01 100 chrXIII:923409-924380 2.43e-01 100 chrXIV:6516-7147 1.30e-05 57_[+3(2.23e-09)]_15 chrXIV:61984-64561 9.38e-01 100 chrXIV:88982-90055 8.75e-01 100 chrXIV:96003-96605 1.44e-08 25_[+3(2.64e-10)]_15_[-2(1.92e-05)]_\ 11 chrXIV:102493-102989 1.10e-10 31_[-2(2.16e-10)]_16_[+1(1.10e-07)]_\ 11 chrXIV:104606-105124 1.08e-04 32_[+1(1.37e-08)]_47 chrXIV:229395-230713 9.52e-01 100 chrXIV:241423-241726 2.53e-01 100 chrXIV:302742-303693 3.89e-01 100 chrXIV:330341-331085 1.09e-01 100 chrXIV:374653-375091 6.29e-06 53_[-2(1.02e-09)]_26 chrXIV:392129-392739 9.78e-01 100 chrXIV:415232-416139 6.41e-01 100 chrXIV:442777-444290 6.51e-01 100 chrXIV:444470-444767 9.78e-01 100 chrXIV:495206-495613 7.05e-01 100 chrXIV:499211-501323 4.08e-01 100 chrXIV:546959-547395 1.59e-06 39_[+1(2.33e-09)]_40 chrXIV:560150-561177 5.49e-01 100 chrXIV:567881-568602 1.17e-01 100 chrXIV:569705-570159 7.28e-08 30_[+2(7.88e-12)]_28_[+2(5.46e-05)] chrXIV:576706-577355 1.22e-01 100 chrXIV:585482-586563 8.23e-01 100 chrXIV:602103-602524 1.78e-08 55_[-2(7.88e-12)]_24 chrXIV:619749-620055 9.67e-01 100 chrXIV:628224-628726 9.07e-01 100 chrXIV:631534-632145 2.26e-09 65_[-1(1.47e-13)]_14 chrXIV:632422-632868 3.49e-11 10_[-2(2.16e-10)]_16_[+1(1.10e-07)]_\ 32 chrXIV:715805-716914 8.08e-01 100 chrXIV:721138-723183 6.93e-01 100 chrXIV:725674-726394 9.91e-01 100 chrXIV:771961-772272 1.02e-01 100 chrXIV:783624-784322 4.34e-02 25_[-3(9.84e-05)]_47 chrXV:2-977 6.00e-01 100 chrXV:79749-80111 9.24e-01 100 chrXV:80360-81157 5.66e-01 100 chrXV:92104-94808 7.90e-01 100 chrXV:110848-111246 5.67e-08 3_[+3(2.64e-10)]_69 chrXV:113549-114165 1.28e-12 1_[-2(1.01e-11)]_15_[+1(1.37e-08)]_\ 42 chrXV:159273-160714 4.14e-01 100 chrXV:161132-161403 9.46e-01 100 chrXV:168004-168524 9.90e-01 100 chrXV:216262-216669 6.31e-01 100 chrXV:226354-226879 3.19e-07 53_[-1(3.13e-11)]_26 chrXV:228043-228542 1.00e+00 100 chrXV:253821-254088 6.11e-02 100 chrXV:274474-274986 6.91e-03 63_[+1(8.02e-06)]_16 chrXV:281698-282539 9.89e-01 100 chrXV:288016-288407 7.16e-05 37_[-2(9.48e-08)]_42 chrXV:300862-301476 1.92e-06 49_[+1(2.33e-09)]_30 chrXV:339921-340608 3.30e-01 100 chrXV:353793-354432 9.66e-08 23_[+2(1.01e-11)]_56 chrXV:380679-381073 6.39e-01 100 chrXV:407640-408149 5.37e-01 100 chrXV:438451-439516 1.66e-01 100 chrXV:444675-446221 4.96e-01 100 chrXV:464256-464945 1.00e+00 100 chrXV:487187-487696 1.47e-06 54_[-2(2.16e-10)]_25 chrXV:505149-505466 2.95e-01 100 chrXV:571734-572150 2.22e-09 70_[-3(4.77e-12)]_2 chrXV:594252-594753 9.89e-01 100 chrXV:619687-624650 3.98e-01 100 chrXV:663477-664232 1.93e-10 16_[-1(2.64e-09)]_16_[+2(4.44e-08)]_\ 26 chrXV:677803-679187 9.75e-01 100 chrXV:710033-710479 2.04e-02 41_[-1(3.67e-05)]_38 chrXV:725126-725652 7.20e-01 100 chrXV:759072-759543 3.60e-01 100 chrXV:779723-780984 6.83e-02 100 chrXV:832361-832761 5.03e-01 100 chrXV:842375-842985 3.62e-02 53_[-2(4.06e-05)]_26 chrXV:853954-854429 2.91e-07 54_[-1(2.06e-11)]_25 chrXV:866558-868141 8.18e-01 100 chrXV:877741-878025 3.92e-01 100 chrXV:901477-901686 8.99e-01 100 chrXV:925224-925423 6.94e-01 100 chrXV:968145-968422 6.66e-02 100 chrXV:976179-978323 3.68e-01 100 chrXV:978839-979103 3.65e-01 100 chrXV:980499-981299 8.06e-01 100 chrXV:1003935-1004984 9.85e-01 100 chrXV:1025300-1026549 4.07e-01 100 chrXV:1027287-1029433 3.90e-01 100 chrXVI:55793-56503 2.16e-04 79_[-1(6.37e-08)] chrXVI:76331-76707 2.94e-01 100 chrXVI:172890-174114 9.72e-01 100 chrXVI:188588-188930 6.73e-02 100 chrXVI:209561-210479 1.00e+00 100 chrXVI:280504-281856 7.46e-01 100 chrXVI:302371-302936 7.04e-01 100 chrXVI:338749-339222 8.17e-01 100 chrXVI:378684-378994 4.13e-01 100 chrXVI:404539-405848 9.48e-01 100 chrXVI:406203-407790 9.41e-01 100 chrXVI:435186-436186 2.65e-01 100 chrXVI:514512-517119 4.33e-01 100 chrXVI:520112-520693 2.67e-01 100 chrXVI:560042-560492 5.54e-06 44_[+2(1.02e-09)]_35 chrXVI:571731-572557 9.07e-01 100 chrXVI:581823-582318 1.54e-05 48_[-2(2.80e-08)]_31 chrXVI:622090-622842 8.99e-01 100 chrXVI:689349-689864 3.67e-10 15_[-2(7.89e-10)]_24_[+1(7.35e-07)]_\ 19 chrXVI:699930-700712 7.59e-01 100 chrXVI:701855-702428 1.70e-01 100 chrXVI:718417-719503 5.69e-01 100 chrXVI:731646-732278 7.60e-01 100 chrXVI:743982-744525 9.03e-01 100 chrXVI:769016-769475 1.49e-12 20_[-1(2.33e-09)]_38_[+2(1.48e-09)] chrXVI:775691-776178 4.29e-01 100 chrXVI:794492-794783 9.94e-01 100 chrXVI:810469-810840 1.51e-06 78_[-2(2.16e-10)]_1 chrXVI:819324-819982 5.65e-01 100 chrXVI:820191-820607 9.46e-01 100 chrXVI:821641-822126 9.99e-01 100 chrXVI:856770-857100 9.38e-16 23_[-2(1.67e-09)]_15_[+1(9.44e-11)]_\ 20 chrXVI:860088-860621 3.96e-01 100 chrXVI:860941-861113 3.79e-01 100 chrXVI:880126-880563 2.87e-15 10_[-1(1.58e-10)]_16_[+2(7.88e-12)]_\ 32 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************