Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.120488
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.071423
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.093755
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.025731
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background
Finished invoke:
  name: bg  status: 0  time: 0.019831
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 912.719725
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 56.500488
Invoking:
  centrimo -seqlen 526 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.179515
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.556544
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background -primary DRAGRTCCBSGGTTCGATYCCSVK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.676043
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background -primary SSCTYWAMCMACTRVRCYAHV /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.610888
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background -primary TRTARYGGYTAKYACAYMWCGYTBTSRCCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.358731
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background -primary AAAAADA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.557552
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background -primary CACGGYG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.285417
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background -primary GCMAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.41983
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background -primary AAGCGCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.277034
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.335174
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background -primary GMTACCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.245374
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background -primary CTCTCSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.251498
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background -primary AGACCRC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.317281
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background -primary ATCTTYTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.304358
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background -primary GTAWGAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.297583
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background --motif DRAGRTCCBSGGTTCGATYCCSVK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.307564
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background --motif SSCTYWAMCMACTRVRCYAHV /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.307424
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background --motif TRTARYGGYTAKYACAYMWCGYTBTSRCCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.327824
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background --motif AAAAADA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.209028
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background --motif CACGGYG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.218808
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background --motif GCMAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.215172
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background --motif AAGCGCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.221098
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.223174
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background --motif GMTACCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.220777
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background --motif CTCTCSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.199643
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background --motif AGACCRC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.204574
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background --motif ATCTTYTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.230204
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/background --motif GTAWGAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/BY4741--CIN5.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.219751
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--CIN5/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.203764
Done