******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ARR1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:2-1116 1.0000 100 chrI:71742-73668 1.0000 100 chrI:81916-82280 1.0000 100 chrI:138882-139361 1.0000 100 chrI:141574-141935 1.0000 100 chrI:151544-151918 1.0000 100 chrI:166057-166556 1.0000 100 chrI:180920-181466 1.0000 100 chrI:182366-182781 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chrXV:832346-832743 1.0000 100 chrXV:842377-842934 1.0000 100 chrXV:854006-854440 1.0000 100 chrXV:866533-868114 1.0000 100 chrXV:877418-878015 1.0000 100 chrXV:901435-901654 1.0000 100 chrXV:925206-925409 1.0000 100 chrXV:968134-968447 1.0000 100 chrXV:976199-976764 1.0000 100 chrXV:978826-979124 1.0000 100 chrXV:980494-981129 1.0000 100 chrXV:1003943-1004972 1.0000 100 chrXV:1025706-1026069 1.0000 100 chrXV:1027890-1029580 1.0000 100 chrXV:1091128-1091290 1.0000 100 chrXVI:55849-56507 1.0000 100 chrXVI:75437-76735 1.0000 100 chrXVI:98616-99099 1.0000 100 chrXVI:135535-135839 1.0000 100 chrXVI:172843-174113 1.0000 100 chrXVI:188125-188943 1.0000 100 chrXVI:209782-210479 1.0000 100 chrXVI:280603-281917 1.0000 100 chrXVI:302619-304270 1.0000 100 chrXVI:338727-339133 1.0000 100 chrXVI:352278-352698 1.0000 100 chrXVI:377942-378447 1.0000 100 chrXVI:378664-379015 1.0000 100 chrXVI:404543-405851 1.0000 100 chrXVI:406199-407780 1.0000 100 chrXVI:435497-436181 1.0000 100 chrXVI:520151-520737 1.0000 100 chrXVI:560022-560504 1.0000 100 chrXVI:572007-572575 1.0000 100 chrXVI:581839-582313 1.0000 100 chrXVI:622326-622837 1.0000 100 chrXVI:653832-655018 1.0000 100 chrXVI:689348-689852 1.0000 100 chrXVI:699896-700701 1.0000 100 chrXVI:701869-702306 1.0000 100 chrXVI:718427-719510 1.0000 100 chrXVI:731895-732306 1.0000 100 chrXVI:744047-744637 1.0000 100 chrXVI:769011-769489 1.0000 100 chrXVI:775642-776144 1.0000 100 chrXVI:794472-796074 1.0000 100 chrXVI:810467-810873 1.0000 100 chrXVI:819197-819862 1.0000 100 chrXVI:856751-857272 1.0000 100 chrXVI:860122-860661 1.0000 100 chrXVI:866482-866741 1.0000 100 chrXVI:880118-880584 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ARR1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ARR1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ARR1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 570 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 57000 N= 570 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.296 C 0.204 G 0.204 T 0.296 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ARR1/background): A 0.314 C 0.186 G 0.186 T 0.314 ******************************************************************************** ******************************************************************************** MOTIF YCDKRAGRTCMBSGGTTCGATYCCS MEME-1 width = 25 sites = 128 llr = 2456 E-value = 5.0e-577 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCDKRAGRTCMBSGGTTCGATYCCS MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::3247142:3::2::::2a1:::: pos.-specific C 371:::1:17544::::a::25a75 probability G 23454276::2357a:::8:2:::4 matrix T 5:231:::73:31::aa:::55:2: bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * **** * * Relative 1.5 * * ****** * Entropy 1.2 * * * ******* * (27.7 bits) 1.0 * ** * ******** **** 0.7 * *** * ******** **** 0.5 ** **************** **** 0.2 ************************* 0.0 ------------------------- Multilevel TCGGAAGGTCCCGGGTTCGATTCCC consensus CGATGG A TAGC A CC TG sequence G TA T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDKRAGRTCMBSGGTTCGATYCCS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------- chrIII:123400-123816 - 29 5.14e-15 CGCTTAGGGT GCGGGAGGTCCCGGGTTCGAGTCCC GGCTCGCCCC chrXVI:880118-880584 - 5 1.49e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCCG CTAG chrXIV:569674-570141 - 20 1.49e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrVII:738883-739451 + 44 1.49e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrV:551106-551573 - 6 1.49e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCCG CTAGA chrIX:210512-210969 + 14 1.49e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrIX:183288-183707 - 3 1.49e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCCG CT chrIV:667782-668254 - 49 1.49e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrII:197222-197865 + 40 1.49e-11 GTGCTAATAA CGCGGGGATCAGCGGTTCGATCCCG CTAGAGACCA chrXVI:581839-582313 + 74 2.05e-11 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CT chrXIII:480383-480886 - 47 2.05e-11 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrXI:202830-203322 + 11 2.05e-11 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrX:414787-415254 + 34 2.05e-11 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrVII:185416-186081 - 26 2.05e-11 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrVI:226549-226941 - 3 2.05e-11 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CT chrV:435574-436037 - 7 2.05e-11 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CTACAG chrV:135171-135693 - 53 2.05e-11 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrIX:300030-300501 - 23 2.05e-11 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrIV:1352293-1352736 - 12 2.05e-11 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrIV:1201517-1202097 + 31 2.05e-11 TGACTCTTAA TCATAAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrXIII:747741-748158 - 3 3.25e-11 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCCC AT chrXIII:131557-132104 - 55 3.25e-11 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrXI:162272-162754 - 34 3.25e-11 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrX:374193-374855 - 42 3.25e-11 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrX:355148-355733 + 21 3.25e-11 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrVII:828474-828984 - 54 3.25e-11 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrVII:405278-405781 + 28 3.25e-11 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrIV:568666-569246 + 13 3.25e-11 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrII:405651-406222 + 29 3.25e-11 TGACTTCTAA TCAGAAGATTATGGGTTCGACCCCC ATCGTGAGTG chrXVI:860122-860661 + 74 3.77e-11 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTCCG GG chrXVI:572007-572575 + 64 3.77e-11 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrXV:300868-301438 + 61 3.77e-11 GACAAAGCAT GCGAGAGGCCCTGGGTTCAATTCCC AGCTCGCCCC chrXV:226425-226914 - 2 3.77e-11 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTCCG G chrXIV:567900-568554 + 6 3.77e-11 AGCAT GCGAGAGGCCCTGGGTTCAATTCCC AGCTCGCCCC chrXIV:546946-547419 + 30 3.77e-11 GACAAAGCAT GCGAGAGGCCCTGGGTTCAATTCCC AGCTCGCCCC chrXII:92291-92953 + 44 3.77e-11 GACAAAGCAT GCGAGAGGCCCTGGGTTCAATTCCC AGCTCGCCCC chrX:531571-532158 + 50 3.77e-11 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrX:396542-397018 - 6 3.77e-11 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTCCG GGCTT chrVIII:388669-389209 - 14 3.77e-11 GACAAAGCAT GCGAGAGGCCCTGGGTTCAATTCCC AGCTCGCCCC chrVII:930738-931218 - 35 3.77e-11 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrVII:845400-845926 + 72 3.77e-11 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTCCG GGCT chrVI:180682-181247 - 70 3.77e-11 TTGCCA TCGTTGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrIV:992614-993075 + 74 3.77e-11 AACGTTGCCA TCGTTGGGCCCCCGGTTCGATTCCG GG chrXV:854006-854440 - 24 5.06e-11 TCCCTTGCAA GGAAGAGGTCATCGGTTCGATTCCG GTTGCGTCCA chrXII:214637-215157 - 46 5.06e-11 TCCCTTGCAA GGAAGAGGTCATCGGTTCGATTCCG GTTGCGTCCA chrV:311754-312300 - 56 5.06e-11 TCCCTTGCAA GGAAGAGGTCATCGGTTCGATTCCG GTTGCGTCCA chrI:166057-166556 + 49 5.06e-11 TCCCTTGCAA GGAAGAGGTCATCGGTTCGATTCCG GTTGCGTCCA chrVII:541628-542156 + 45 5.84e-11 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCCC CGTATCGGAG chrV:487080-487617 - 43 5.84e-11 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCCC CGTATCGGAG chrV:176889-177460 + 12 5.84e-11 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCCC CGTATCGGAG chrIX:370218-370655 + 68 5.84e-11 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCCC CGTATCGG chrIV:1016966-1017507 - 31 5.84e-11 CACGTTCTCA CCGTGGAGACCGGGGTTCGACTCCC CGCTTCGGAG chrIII:82191-82753 - 50 5.84e-11 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCCC CGTATCGGAG chrII:644986-645436 + 43 5.84e-11 CACGCTTTCA CCGTGGAGACCGGGGTTCGACTCCC CGTATCGGAG chrXVI:769011-769489 - 17 1.02e-10 AGCAAGGATA CCGAAATGTCAGGGGTTCGAGCCCC CTATGAGGAG chrXV:438414-439022 + 36 1.02e-10 AGCAAGGATA CCGAAATGTCAGGGGTTCGAGCCCC CTATGAGGAG chrXII:875214-875649 + 56 1.02e-10 AGCAAGGATA CCGAAATGTCAGGGGTTCGAGCCCC CTATGAGGAG chrXI:578761-579313 + 39 1.02e-10 AGCAAGGATA CCGAAATGTCAGGGGTTCGAGCCCC CTATGAGGAG chrIV:359372-359877 + 64 1.02e-10 AGCAAGGATA CCGAAATGTCAGGGGTTCGAGCCCC CTATGAGGAG chrXIII:320946-321341 - 64 1.16e-10 CCCTTAGCAT GGGAGAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrXII:656701-657189 - 49 1.16e-10 CCCTTAGCAT GGGAGAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrX:197127-197602 - 9 1.16e-10 CCCTTAGCAT GGGAGAGGTCTCCGGTTCGATTCCG GACTCGTC chrVII:774124-774633 + 59 1.16e-10 CCCTTAGCAT GGGAGAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrIV:410176-410680 + 39 1.16e-10 CCCTTAGCAT GGGAGAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrIV:802553-803004 - 13 1.96e-10 TCGGTTTTGA TCCGGACAACCCCGGTTCGAATCCG GGTAGGACCT chrIV:645001-645397 - 14 1.96e-10 TCGGTTTTGA TCCGGACAACCCCGGTTCGAATCCG GGTAGGACCT chrIV:520740-521244 + 67 1.96e-10 TCGGTTTTGA TCCGGACAACCCCGGTTCGAATCCG GGTAGGACC chrIII:168101-168606 - 8 1.96e-10 TCGGTTTTGA TCCGGACAACCCCGGTTCGAATCCG GGTAGGA chrII:350588-351127 + 57 1.96e-10 TCGGTTTTGA TCCGGACAACCCCGGTTCGAATCCG GGTAAGACCT chrV:130834-131411 - 20 3.21e-10 TCGGTTTTGA TCCGAACAACCCCGGTTCGAATCCG GGTAAGACCT chrXV:663533-664109 - 51 3.62e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTG GGCGAAATCG chrXIII:586409-586913 - 35 3.62e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTG GGCGAAATCA chrXIII:420335-420866 - 48 3.62e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTG GGCGAAATCA chrXIII:372162-372723 - 63 3.62e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTG GGCGAAATCA chrXII:687650-688151 - 19 3.62e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTG GGCGAAATCA chrXI:379481-379921 + 68 3.62e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTG GGCGAAAT chrXI:307973-308420 - 8 3.62e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTG GGCGAAA chrVIII:475506-475914 - 56 3.62e-10 GCCTTCACAC GGCAAAGGTCCCGAGTTCGATCCTC GGTTGGAACA chrVIII:85075-85562 - 40 3.62e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTG GGCGAAATCA chrV:469264-469696 + 66 3.62e-10 TGCTTAACAC GCAGAACGTCCCCAGTTCGATCCTG GGCGAAATCA chrX:538355-538896 + 17 6.48e-10 TCCCTCCTAA GGAGAAGACTGCGGGTTCGAGTCCC GTACGGAACG chrXV:113498-114165 + 59 8.10e-10 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrVIII:115880-116402 - 26 8.10e-10 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrIX:325539-326076 + 29 8.10e-10 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrIX:174843-175267 + 64 8.10e-10 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrIV:488435-489153 - 63 8.10e-10 GCCTTTACAC GGCGAAGATCCCGAGTTCGAACCTC GGTTGGATCA chrIV:434039-434550 - 30 8.10e-10 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrII:266172-266673 + 44 8.10e-10 ACACTAGTAA TGTGGAGATCATCGGTTCAAATCCG ATTGGAAGCA chrXVI:622326-622837 - 19 3.09e-09 GGTCAAGTTA TCTGGAGGTCCTGTGTTCGATCCAC AGAATTCGCA chrVI:157656-158231 - 33 3.09e-09 GGTCAAGTTA TCTGGAGGTCCTGTGTTCGATCCAC AGAATTCGCA chrIV:1095139-1095685 - 18 3.09e-09 GGTCAAGATA TCTGGAGGTCCTGTGTTCGATCCAC AGAGTTCGCA chrXV:976199-976764 + 28 4.94e-09 AGTCTCATAA TCTGAAGGTCGAGAGTTCGAACCTC CCCTGGAGCA chrXIII:837704-838265 + 48 4.94e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTCGC CCCCGGGAGA chrXIII:572693-573162 - 16 4.94e-09 AGTCTCATAA TCTGAAGGTCGAGAGTTCGAACCTC CCCTGGAGCA chrXIII:168596-169054 + 74 4.94e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTCGC CC chrX:422672-423278 + 50 4.94e-09 AGTCTCATAA TCTGAAGGTCGAGAGTTCGAACCTC CCCTGGAGCA chrX:390841-391325 - 20 4.94e-09 AGTCTCATAA TCTGAAGGTCGAGAGTTCGAACCTC CCCTGGAGCA chrX:354023-354554 + 60 4.94e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTCGC CCCCGGGAGA chrVI:210436-210900 - 11 4.94e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTCGC CCCCGGGAGA chrVI:167260-167724 + 49 4.94e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTCGC CCCCGGGAGA chrIV:946145-946615 + 36 4.94e-09 CACTACGAAA TCTTGAGATCGGGCGTTCGACTCGC CCCCGGGAGA chrVII:779395-779912 + 50 7.70e-09 CACCCTTCCA AGGTGGGGACACGGGTTCGATTCTC GTACCGCTCA chrXV:487248-487710 + 49 8.40e-09 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXV:228118-228621 + 51 8.40e-09 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXIV:632414-632885 + 39 8.40e-09 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXII:975782-976248 - 28 8.40e-09 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrVII:730951-731416 + 43 8.40e-09 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrVI:137262-137804 - 13 8.40e-09 CGACTGTTAA TCGCAAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXV:340090-340596 - 16 1.90e-08 TGGCTACGAA CCAGAAGATTCCAGGTTCAAGTCCT GGCGGGGAAG chrXII:374203-374664 + 10 1.90e-08 GGCTACGAA CCAGAAGATTCCAGGTTCAAGTCCT GGCGGGGAAG chrXI:490718-491365 + 15 1.90e-08 TGGCTACGAA CCAGAAGATTCCAGGTTCAAGTCCT GGCGGGGAAG chrIV:619740-620239 - 40 1.90e-08 TGGCTACGAA CCAGAAGATTCCAGGTTCAAGTCCT GGCGGGGAAG chrXVI:55849-56507 - 51 2.77e-08 AAGATTGCAA TCGAAGGGTTGCAGGTTCAATTCCT GTCCGTTTCA chrXIII:379047-379618 - 31 2.77e-08 AAGATTGCAA TCGAAGGGTTGCAGGTTCAATTCCT GTCCGTTTCA chrVIII:466777-467273 + 52 3.97e-08 GCACTTGTAA TGCAAAGGTCGCTAGTTCAATTCTG GCAGGTGGCA chrXVI:744047-744637 + 29 6.38e-08 GCACTTGTAA TGCAAAGGTCGTTAGTTCAATTCTG ACAGGTGGCA chrXIII:463315-463871 + 48 6.38e-08 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrXII:426900-427430 + 54 6.38e-08 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrX:541327-541811 + 26 6.38e-08 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrVII:531438-531813 + 72 6.38e-08 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTCCC CGTC chrIX:336107-336648 - 32 6.38e-08 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrIX:324041-324600 - 43 6.38e-08 GCGCTTGTCG CGTGCCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrVII:706918-707345 - 37 1.06e-07 AGATTGCAAA TCTGTTGGTCCTTAGTTCGATCCTG AGTGCGAGCT chrVII:319591-320135 + 5 2.34e-07 GTGG CCGATGAAACCCTGGTTCGATTCTA GGAGATGGCA chrVII:110410-110930 - 15 2.34e-07 ATCGTTGTGG CCGATGAAACCCTGGTTCGATTCTA GGAGATGGCA chrV:434369-434770 - 32 2.34e-07 ATCGTTGTGG CCGATGAAACCCTGGTTCGATTCTA GGAGATGGCA chrV:207132-207683 + 37 2.34e-07 ATCGTTGTGG CCGATGAAACCCTGGTTCGATTCTA GGAGATGGCA chrX:517639-518097 - 5 3.19e-07 GGGCTCATAA CCCTGATGTCCTCGGATCGAAACCG AGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDKRAGRTCMBSGGTTCGATYCCS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123400-123816 5.1e-15 28_[-1]_47 chrXVI:880118-880584 1.5e-11 4_[-1]_71 chrXIV:569674-570141 1.5e-11 19_[-1]_56 chrVII:738883-739451 1.5e-11 43_[+1]_32 chrV:551106-551573 1.5e-11 5_[-1]_70 chrIX:210512-210969 1.5e-11 13_[+1]_62 chrIX:183288-183707 1.5e-11 2_[-1]_73 chrIV:667782-668254 1.5e-11 48_[-1]_27 chrII:197222-197865 1.5e-11 39_[+1]_36 chrXVI:581839-582313 2e-11 73_[+1]_2 chrXIII:480383-480886 2e-11 46_[-1]_29 chrXI:202830-203322 2e-11 10_[+1]_65 chrX:414787-415254 2e-11 33_[+1]_42 chrVII:185416-186081 2e-11 25_[-1]_50 chrVI:226549-226941 2e-11 2_[-1]_73 chrV:435574-436037 2e-11 6_[-1]_69 chrV:135171-135693 2e-11 52_[-1]_23 chrIX:300030-300501 2e-11 22_[-1]_53 chrIV:1352293-1352736 2e-11 11_[-1]_64 chrIV:1201517-1202097 2e-11 30_[+1]_45 chrXIII:747741-748158 3.3e-11 2_[-1]_73 chrXIII:131557-132104 3.3e-11 54_[-1]_21 chrXI:162272-162754 3.3e-11 33_[-1]_42 chrX:374193-374855 3.3e-11 41_[-1]_34 chrX:355148-355733 3.3e-11 20_[+1]_55 chrVII:828474-828984 3.3e-11 53_[-1]_22 chrVII:405278-405781 3.3e-11 27_[+1]_48 chrIV:568666-569246 3.3e-11 12_[+1]_63 chrII:405651-406222 3.3e-11 28_[+1]_47 chrXVI:860122-860661 3.8e-11 73_[+1]_2 chrXVI:572007-572575 3.8e-11 63_[+1]_12 chrXV:300868-301438 3.8e-11 60_[+1]_15 chrXV:226425-226914 3.8e-11 1_[-1]_74 chrXIV:567900-568554 3.8e-11 5_[+1]_70 chrXIV:546946-547419 3.8e-11 29_[+1]_46 chrXII:92291-92953 3.8e-11 43_[+1]_32 chrX:531571-532158 3.8e-11 49_[+1]_26 chrX:396542-397018 3.8e-11 5_[-1]_70 chrVIII:388669-389209 3.8e-11 13_[-1]_62 chrVII:930738-931218 3.8e-11 34_[-1]_41 chrVII:845400-845926 3.8e-11 71_[+1]_4 chrVI:180682-181247 3.8e-11 69_[-1]_6 chrIV:992614-993075 3.8e-11 73_[+1]_2 chrXV:854006-854440 5.1e-11 23_[-1]_52 chrXII:214637-215157 5.1e-11 45_[-1]_30 chrV:311754-312300 5.1e-11 55_[-1]_20 chrI:166057-166556 5.1e-11 48_[+1]_27 chrVII:541628-542156 5.8e-11 44_[+1]_31 chrV:487080-487617 5.8e-11 42_[-1]_33 chrV:176889-177460 5.8e-11 11_[+1]_64 chrIX:370218-370655 5.8e-11 67_[+1]_8 chrIV:1016966-1017507 5.8e-11 30_[-1]_45 chrIII:82191-82753 5.8e-11 49_[-1]_26 chrII:644986-645436 5.8e-11 42_[+1]_33 chrXVI:769011-769489 1e-10 16_[-1]_59 chrXV:438414-439022 1e-10 35_[+1]_40 chrXII:875214-875649 1e-10 55_[+1]_20 chrXI:578761-579313 1e-10 38_[+1]_37 chrIV:359372-359877 1e-10 63_[+1]_12 chrXIII:320946-321341 1.2e-10 63_[-1]_12 chrXII:656701-657189 1.2e-10 48_[-1]_27 chrX:197127-197602 1.2e-10 8_[-1]_67 chrVII:774124-774633 1.2e-10 58_[+1]_17 chrIV:410176-410680 1.2e-10 38_[+1]_37 chrIV:802553-803004 2e-10 12_[-1]_63 chrIV:645001-645397 2e-10 13_[-1]_62 chrIV:520740-521244 2e-10 66_[+1]_9 chrIII:168101-168606 2e-10 7_[-1]_68 chrII:350588-351127 2e-10 56_[+1]_19 chrV:130834-131411 3.2e-10 19_[-1]_56 chrXV:663533-664109 3.6e-10 50_[-1]_25 chrXIII:586409-586913 3.6e-10 34_[-1]_41 chrXIII:420335-420866 3.6e-10 47_[-1]_28 chrXIII:372162-372723 3.6e-10 62_[-1]_13 chrXII:687650-688151 3.6e-10 18_[-1]_57 chrXI:379481-379921 3.6e-10 67_[+1]_8 chrXI:307973-308420 3.6e-10 7_[-1]_68 chrVIII:475506-475914 3.6e-10 55_[-1]_20 chrVIII:85075-85562 3.6e-10 39_[-1]_36 chrV:469264-469696 3.6e-10 65_[+1]_10 chrX:538355-538896 6.5e-10 16_[+1]_59 chrXV:113498-114165 8.1e-10 58_[+1]_17 chrVIII:115880-116402 8.1e-10 25_[-1]_50 chrIX:325539-326076 8.1e-10 28_[+1]_47 chrIX:174843-175267 8.1e-10 63_[+1]_12 chrIV:488435-489153 8.1e-10 62_[-1]_13 chrIV:434039-434550 8.1e-10 29_[-1]_46 chrII:266172-266673 8.1e-10 43_[+1]_32 chrXVI:622326-622837 3.1e-09 18_[-1]_57 chrVI:157656-158231 3.1e-09 32_[-1]_43 chrIV:1095139-1095685 3.1e-09 17_[-1]_58 chrXV:976199-976764 4.9e-09 27_[+1]_48 chrXIII:837704-838265 4.9e-09 47_[+1]_28 chrXIII:572693-573162 4.9e-09 15_[-1]_60 chrXIII:168596-169054 4.9e-09 73_[+1]_2 chrX:422672-423278 4.9e-09 49_[+1]_26 chrX:390841-391325 4.9e-09 19_[-1]_56 chrX:354023-354554 4.9e-09 59_[+1]_16 chrVI:210436-210900 4.9e-09 10_[-1]_65 chrVI:167260-167724 4.9e-09 48_[+1]_27 chrIV:946145-946615 4.9e-09 35_[+1]_40 chrVII:779395-779912 7.7e-09 49_[+1]_26 chrXV:487248-487710 8.4e-09 48_[+1]_27 chrXV:228118-228621 8.4e-09 50_[+1]_25 chrXIV:632414-632885 8.4e-09 38_[+1]_37 chrXII:975782-976248 8.4e-09 27_[-1]_48 chrVII:730951-731416 8.4e-09 42_[+1]_33 chrVI:137262-137804 8.4e-09 12_[-1]_63 chrXV:340090-340596 1.9e-08 15_[-1]_60 chrXII:374203-374664 1.9e-08 9_[+1]_66 chrXI:490718-491365 1.9e-08 14_[+1]_61 chrIV:619740-620239 1.9e-08 39_[-1]_36 chrXVI:55849-56507 2.8e-08 50_[-1]_25 chrXIII:379047-379618 2.8e-08 30_[-1]_45 chrVIII:466777-467273 4e-08 51_[+1]_24 chrXVI:744047-744637 6.4e-08 28_[+1]_47 chrXIII:463315-463871 6.4e-08 47_[+1]_28 chrXII:426900-427430 6.4e-08 53_[+1]_22 chrX:541327-541811 6.4e-08 25_[+1]_50 chrVII:531438-531813 6.4e-08 71_[+1]_4 chrIX:336107-336648 6.4e-08 31_[-1]_44 chrIX:324041-324600 6.4e-08 42_[-1]_33 chrVII:706918-707345 1.1e-07 36_[-1]_39 chrVII:319591-320135 2.3e-07 4_[+1]_71 chrVII:110410-110930 2.3e-07 14_[-1]_61 chrV:434369-434770 2.3e-07 31_[-1]_44 chrV:207132-207683 2.3e-07 36_[+1]_39 chrX:517639-518097 3.2e-07 4_[-1]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDKRAGRTCMBSGGTTCGATYCCS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCDKRAGRTCMBSGGTTCGATYCCS width=25 seqs=128 chrIII:123400-123816 ( 29) GCGGGAGGTCCCGGGTTCGAGTCCC 1 chrXVI:880118-880584 ( 5) CGCGGGGATCAGCGGTTCGATCCCG 1 chrXIV:569674-570141 ( 20) CGCGGGGATCAGCGGTTCGATCCCG 1 chrVII:738883-739451 ( 44) CGCGGGGATCAGCGGTTCGATCCCG 1 chrV:551106-551573 ( 6) CGCGGGGATCAGCGGTTCGATCCCG 1 chrIX:210512-210969 ( 14) CGCGGGGATCAGCGGTTCGATCCCG 1 chrIX:183288-183707 ( 3) CGCGGGGATCAGCGGTTCGATCCCG 1 chrIV:667782-668254 ( 49) CGCGGGGATCAGCGGTTCGATCCCG 1 chrII:197222-197865 ( 40) CGCGGGGATCAGCGGTTCGATCCCG 1 chrXVI:581839-582313 ( 74) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrXIII:480383-480886 ( 47) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrXI:202830-203322 ( 11) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrX:414787-415254 ( 34) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrVII:185416-186081 ( 26) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrVI:226549-226941 ( 3) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrV:435574-436037 ( 7) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrV:135171-135693 ( 53) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrIX:300030-300501 ( 23) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrIV:1352293-1352736 ( 12) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrIV:1201517-1202097 ( 31) TCATAAGGTTAGGGGTTCGAGCCCC 1 chrXIII:747741-748158 ( 3) TCAGAAGATTATGGGTTCGACCCCC 1 chrXIII:131557-132104 ( 55) TCAGAAGATTATGGGTTCGACCCCC 1 chrXI:162272-162754 ( 34) TCAGAAGATTATGGGTTCGACCCCC 1 chrX:374193-374855 ( 42) TCAGAAGATTATGGGTTCGACCCCC 1 chrX:355148-355733 ( 21) TCAGAAGATTATGGGTTCGACCCCC 1 chrVII:828474-828984 ( 54) TCAGAAGATTATGGGTTCGACCCCC 1 chrVII:405278-405781 ( 28) TCAGAAGATTATGGGTTCGACCCCC 1 chrIV:568666-569246 ( 13) TCAGAAGATTATGGGTTCGACCCCC 1 chrII:405651-406222 ( 29) TCAGAAGATTATGGGTTCGACCCCC 1 chrXVI:860122-860661 ( 74) TCGTTGGGCCCCCGGTTCGATTCCG 1 chrXVI:572007-572575 ( 64) TCGTTGGGCCCCCGGTTCGATTCCG 1 chrXV:300868-301438 ( 61) GCGAGAGGCCCTGGGTTCAATTCCC 1 chrXV:226425-226914 ( 2) TCGTTGGGCCCCCGGTTCGATTCCG 1 chrXIV:567900-568554 ( 6) GCGAGAGGCCCTGGGTTCAATTCCC 1 chrXIV:546946-547419 ( 30) GCGAGAGGCCCTGGGTTCAATTCCC 1 chrXII:92291-92953 ( 44) GCGAGAGGCCCTGGGTTCAATTCCC 1 chrX:531571-532158 ( 50) TCGTTGGGCCCCCGGTTCGATTCCG 1 chrX:396542-397018 ( 6) TCGTTGGGCCCCCGGTTCGATTCCG 1 chrVIII:388669-389209 ( 14) GCGAGAGGCCCTGGGTTCAATTCCC 1 chrVII:930738-931218 ( 35) TCGTTGGGCCCCCGGTTCGATTCCG 1 chrVII:845400-845926 ( 72) TCGTTGGGCCCCCGGTTCGATTCCG 1 chrVI:180682-181247 ( 70) TCGTTGGGCCCCCGGTTCGATTCCG 1 chrIV:992614-993075 ( 74) TCGTTGGGCCCCCGGTTCGATTCCG 1 chrXV:854006-854440 ( 24) GGAAGAGGTCATCGGTTCGATTCCG 1 chrXII:214637-215157 ( 46) GGAAGAGGTCATCGGTTCGATTCCG 1 chrV:311754-312300 ( 56) GGAAGAGGTCATCGGTTCGATTCCG 1 chrI:166057-166556 ( 49) GGAAGAGGTCATCGGTTCGATTCCG 1 chrVII:541628-542156 ( 45) CCGTGGAGACCGGGGTTCGACTCCC 1 chrV:487080-487617 ( 43) CCGTGGAGACCGGGGTTCGACTCCC 1 chrV:176889-177460 ( 12) CCGTGGAGACCGGGGTTCGACTCCC 1 chrIX:370218-370655 ( 68) CCGTGGAGACCGGGGTTCGACTCCC 1 chrIV:1016966-1017507 ( 31) CCGTGGAGACCGGGGTTCGACTCCC 1 chrIII:82191-82753 ( 50) CCGTGGAGACCGGGGTTCGACTCCC 1 chrII:644986-645436 ( 43) CCGTGGAGACCGGGGTTCGACTCCC 1 chrXVI:769011-769489 ( 17) CCGAAATGTCAGGGGTTCGAGCCCC 1 chrXV:438414-439022 ( 36) CCGAAATGTCAGGGGTTCGAGCCCC 1 chrXII:875214-875649 ( 56) CCGAAATGTCAGGGGTTCGAGCCCC 1 chrXI:578761-579313 ( 39) CCGAAATGTCAGGGGTTCGAGCCCC 1 chrIV:359372-359877 ( 64) CCGAAATGTCAGGGGTTCGAGCCCC 1 chrXIII:320946-321341 ( 64) GGGAGAGGTCTCCGGTTCGATTCCG 1 chrXII:656701-657189 ( 49) GGGAGAGGTCTCCGGTTCGATTCCG 1 chrX:197127-197602 ( 9) GGGAGAGGTCTCCGGTTCGATTCCG 1 chrVII:774124-774633 ( 59) GGGAGAGGTCTCCGGTTCGATTCCG 1 chrIV:410176-410680 ( 39) GGGAGAGGTCTCCGGTTCGATTCCG 1 chrIV:802553-803004 ( 13) TCCGGACAACCCCGGTTCGAATCCG 1 chrIV:645001-645397 ( 14) TCCGGACAACCCCGGTTCGAATCCG 1 chrIV:520740-521244 ( 67) TCCGGACAACCCCGGTTCGAATCCG 1 chrIII:168101-168606 ( 8) TCCGGACAACCCCGGTTCGAATCCG 1 chrII:350588-351127 ( 57) TCCGGACAACCCCGGTTCGAATCCG 1 chrV:130834-131411 ( 20) TCCGAACAACCCCGGTTCGAATCCG 1 chrXV:663533-664109 ( 51) GCAGAACGTCCCCAGTTCGATCCTG 1 chrXIII:586409-586913 ( 35) GCAGAACGTCCCCAGTTCGATCCTG 1 chrXIII:420335-420866 ( 48) GCAGAACGTCCCCAGTTCGATCCTG 1 chrXIII:372162-372723 ( 63) GCAGAACGTCCCCAGTTCGATCCTG 1 chrXII:687650-688151 ( 19) GCAGAACGTCCCCAGTTCGATCCTG 1 chrXI:379481-379921 ( 68) GCAGAACGTCCCCAGTTCGATCCTG 1 chrXI:307973-308420 ( 8) GCAGAACGTCCCCAGTTCGATCCTG 1 chrVIII:475506-475914 ( 56) GGCAAAGGTCCCGAGTTCGATCCTC 1 chrVIII:85075-85562 ( 40) GCAGAACGTCCCCAGTTCGATCCTG 1 chrV:469264-469696 ( 66) GCAGAACGTCCCCAGTTCGATCCTG 1 chrX:538355-538896 ( 17) GGAGAAGACTGCGGGTTCGAGTCCC 1 chrXV:113498-114165 ( 59) TGTGGAGATCATCGGTTCAAATCCG 1 chrVIII:115880-116402 ( 26) TGTGGAGATCATCGGTTCAAATCCG 1 chrIX:325539-326076 ( 29) TGTGGAGATCATCGGTTCAAATCCG 1 chrIX:174843-175267 ( 64) TGTGGAGATCATCGGTTCAAATCCG 1 chrIV:488435-489153 ( 63) GGCGAAGATCCCGAGTTCGAACCTC 1 chrIV:434039-434550 ( 30) TGTGGAGATCATCGGTTCAAATCCG 1 chrII:266172-266673 ( 44) TGTGGAGATCATCGGTTCAAATCCG 1 chrXVI:622326-622837 ( 19) TCTGGAGGTCCTGTGTTCGATCCAC 1 chrVI:157656-158231 ( 33) TCTGGAGGTCCTGTGTTCGATCCAC 1 chrIV:1095139-1095685 ( 18) TCTGGAGGTCCTGTGTTCGATCCAC 1 chrXV:976199-976764 ( 28) TCTGAAGGTCGAGAGTTCGAACCTC 1 chrXIII:837704-838265 ( 48) TCTTGAGATCGGGCGTTCGACTCGC 1 chrXIII:572693-573162 ( 16) TCTGAAGGTCGAGAGTTCGAACCTC 1 chrXIII:168596-169054 ( 74) TCTTGAGATCGGGCGTTCGACTCGC 1 chrX:422672-423278 ( 50) TCTGAAGGTCGAGAGTTCGAACCTC 1 chrX:390841-391325 ( 20) TCTGAAGGTCGAGAGTTCGAACCTC 1 chrX:354023-354554 ( 60) TCTTGAGATCGGGCGTTCGACTCGC 1 chrVI:210436-210900 ( 11) TCTTGAGATCGGGCGTTCGACTCGC 1 chrVI:167260-167724 ( 49) TCTTGAGATCGGGCGTTCGACTCGC 1 chrIV:946145-946615 ( 36) TCTTGAGATCGGGCGTTCGACTCGC 1 chrVII:779395-779912 ( 50) AGGTGGGGACACGGGTTCGATTCTC 1 chrXV:487248-487710 ( 49) TCGCAAGATCGTGAGTTCAACCCTC 1 chrXV:228118-228621 ( 51) TCGCAAGATCGTGAGTTCAACCCTC 1 chrXIV:632414-632885 ( 39) TCGCAAGATCGTGAGTTCAACCCTC 1 chrXII:975782-976248 ( 28) TCGCAAGATCGTGAGTTCAACCCTC 1 chrVII:730951-731416 ( 43) TCGCAAGATCGTGAGTTCAACCCTC 1 chrVI:137262-137804 ( 13) TCGCAAGATCGTGAGTTCAACCCTC 1 chrXV:340090-340596 ( 16) CCAGAAGATTCCAGGTTCAAGTCCT 1 chrXII:374203-374664 ( 10) CCAGAAGATTCCAGGTTCAAGTCCT 1 chrXI:490718-491365 ( 15) CCAGAAGATTCCAGGTTCAAGTCCT 1 chrIV:619740-620239 ( 40) CCAGAAGATTCCAGGTTCAAGTCCT 1 chrXVI:55849-56507 ( 51) TCGAAGGGTTGCAGGTTCAATTCCT 1 chrXIII:379047-379618 ( 31) TCGAAGGGTTGCAGGTTCAATTCCT 1 chrVIII:466777-467273 ( 52) TGCAAAGGTCGCTAGTTCAATTCTG 1 chrXVI:744047-744637 ( 29) TGCAAAGGTCGTTAGTTCAATTCTG 1 chrXIII:463315-463871 ( 48) CGTGCCAGATCGGGGTTCAATTCCC 1 chrXII:426900-427430 ( 54) CGTGCCAGATCGGGGTTCAATTCCC 1 chrX:541327-541811 ( 26) CGTGCCAGATCGGGGTTCAATTCCC 1 chrVII:531438-531813 ( 72) CGTGCCAGATCGGGGTTCAATTCCC 1 chrIX:336107-336648 ( 32) CGTGCCAGATCGGGGTTCAATTCCC 1 chrIX:324041-324600 ( 43) CGTGCCAGATCGGGGTTCAATTCCC 1 chrVII:706918-707345 ( 37) TCTGTTGGTCCTTAGTTCGATCCTG 1 chrVII:319591-320135 ( 5) CCGATGAAACCCTGGTTCGATTCTA 1 chrVII:110410-110930 ( 15) CCGATGAAACCCTGGTTCGATTCTA 1 chrV:434369-434770 ( 32) CCGATGAAACCCTGGTTCGATTCTA 1 chrV:207132-207683 ( 37) CCGATGAAACCCTGGTTCGATTCTA 1 chrX:517639-518097 ( 5) CCCTGATGTCCTCGGATCGAAACCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDKRAGRTCMBSGGTTCGATYCCS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 43320 bayes= 10.4017 E= 5.0e-577 -533 56 18 69 -1364 197 56 -1364 -8 -32 92 -63 -52 -199 131 -20 48 -199 113 -152 116 -199 38 -533 -124 -66 192 -274 34 -1364 169 -1364 -74 -66 -1364 115 -1364 200 -1364 -29 13 129 -18 -301 -333 92 85 -16 -274 101 149 -252 -74 -199 200 -374 -1364 -1364 243 -1364 -533 -1364 -1364 166 -1364 -1364 -1364 167 -1364 243 -1364 -1364 -38 -1364 203 -1364 167 -1364 -1364 -1364 -116 24 -11 58 -533 129 -1364 78 -1364 243 -1364 -1364 -374 192 -199 -47 -333 149 110 -274 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDKRAGRTCMBSGGTTCGATYCCS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 128 E= 5.0e-577 0.007812 0.273438 0.210938 0.507812 0.000000 0.726562 0.273438 0.000000 0.296875 0.148438 0.351562 0.203125 0.218750 0.046875 0.460938 0.273438 0.437500 0.046875 0.406250 0.109375 0.703125 0.046875 0.242188 0.007812 0.132812 0.117188 0.703125 0.046875 0.398438 0.000000 0.601562 0.000000 0.187500 0.117188 0.000000 0.695312 0.000000 0.742188 0.000000 0.257812 0.343750 0.453125 0.164062 0.039062 0.031250 0.351562 0.335938 0.281250 0.046875 0.375000 0.523438 0.054688 0.187500 0.046875 0.742188 0.023438 0.000000 0.000000 1.000000 0.000000 0.007812 0.000000 0.000000 0.992188 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.242188 0.000000 0.757812 0.000000 1.000000 0.000000 0.000000 0.000000 0.140625 0.218750 0.171875 0.468750 0.007812 0.453125 0.000000 0.539062 0.000000 1.000000 0.000000 0.000000 0.023438 0.703125 0.046875 0.226562 0.031250 0.523438 0.398438 0.046875 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDKRAGRTCMBSGGTTCGATYCCS MEME-1 regular expression -------------------------------------------------------------------------------- [TCG][CG][GAT][GTA][AG][AG]G[GA]T[CT][CA][CGT][GC]GGTTC[GA]A[TC][TC]C[CT][CG] -------------------------------------------------------------------------------- Time 315.61 secs. ******************************************************************************** ******************************************************************************** MOTIF BDTGGCBYAGTKGKTWRAG MEME-2 width = 19 sites = 155 llr = 1985 E-value = 7.9e-313 ******************************************************************************** -------------------------------------------------------------------------------- Motif BDTGGCBYAGTKGKTWRAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 13:3:::1a2::::26552 pos.-specific C 3::::743::11::2:121 probability G 24:7a:22:8:5a511326 matrix T 33a::334::93:563111 bits 2.4 * * 2.2 * * 1.9 * * 1.7 * * ** * Relative 1.5 * * *** * Entropy 1.2 **** *** * (18.5 bits) 1.0 **** *** * 0.7 ***** ****** * 0.5 ****** ****** ** * 0.2 ******************* 0.0 ------------------- Multilevel CGTGGCCTAGTGGTTAAAG consensus TT A TTC T GATGG sequence GA G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGCBYAGTKGKTWRAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------- chrXIII:259012-259500 - 10 7.32e-10 AGTATGGCAA CTTGGCCGAGTGGTTAAGG CGAAAGATT chrXII:167709-168282 - 57 7.32e-10 CATATGGCAA CTTGGCCGAGTGGTTAAGG CGAAAGATTA chrX:523849-524315 - 38 7.32e-10 TTAAAGGCAA CTTGGCCGAGTGGTTAAGG CGAAAGATTA chrVIII:132800-133375 - 47 7.32e-10 TAAGTGGCAA CTTGGCCGAGTGGTTAAGG CGAAAGATTA chrIV:980753-981259 - 76 7.32e-10 AGGCAA CTTGGCCGAGTGGTTAAGG CGAAAGATTA chrI:182366-182781 - 57 7.32e-10 ATTTTGGCAA CTTGGCCGAGTGGTTAAGG CGAAAGATTA chrXVI:880118-880584 - 45 1.21e-09 ATAATGGTCT CTTGGCCCAGTTGGTTAAG GCACCGTGCT chrXVI:819197-819862 + 55 1.21e-09 AGAATGGTCT CTTGGCCCAGTTGGTTAAG GCACCGTGCT chrXIV:602091-602546 + 49 1.21e-09 ACAATGGTCT CTTGGCCCAGTTGGTTAAG GCACCGTGCT chrXIV:569674-570141 - 60 1.21e-09 ACAGTGGTCT CTTGGCCCAGTTGGTTAAG GCACCGTGCT chrXII:1051911-1052371 - 30 1.21e-09 TTCATGGTCT CTTGGCCCAGTTGGTTAAG GCACCGTGCT chrVII:738883-739451 + 10 1.21e-09 AATAGGTCT CTTGGCCCAGTTGGTTAAG GCACCGTGCT chrV:551106-551573 - 46 1.21e-09 TTACAGGTCT CTTGGCCCAGTTGGTTAAG GCACCGTGCT chrV:443042-443486 - 38 1.21e-09 AATTTGGTCT CTTGGCCCAGTTGGTTAAG GCACCGTGCT chrIX:183288-183707 - 43 1.21e-09 TTCCTGGTCT CTTGGCCCAGTTGGTTAAG GCACCGTGCT chrII:197222-197865 + 6 1.21e-09 GGTCT CTTGGCCCAGTTGGTTAAG GCACCGTGCT chrXVI:689348-689852 + 20 4.00e-09 TTTTGGGCAC TATGGCCGAGTGGTTAAGG CGACAGACTT chrIII:227736-228209 + 25 4.00e-09 GAAATGGCAC TATGGCCGAGTGGTTAAGG CGAGAGACTC chrXII:784155-784571 + 46 4.99e-09 CAACCGTCCC AGTGGCCGAGTGGTTAAGG CGATGCCTGC chrXII:731898-732262 + 65 6.19e-09 ACAATGGGAG TTTGGCCGAGTGGTTTAAG GCGTCAGATT chrX:617754-618160 + 17 6.19e-09 ACAATGGGAG TTTGGCCGAGTGGTTTAAG GCGTCAGATT chrXV:854006-854440 - 63 7.65e-09 CATCAGGGCA CATGGCGCAGTTGGTAGCG CGCTTCCCTT chrXII:605140-605631 - 74 7.65e-09 AATGCTCG TGTAGCTCAGTGGTTAGAG CTTCGTGCTT chrVII:794181-794614 + 75 7.65e-09 ATTGCGGGCA CATGGCGCAGTTGGTAGCG CGCTTCC chrIV:884181-884647 + 2 7.65e-09 G TGTAGCTCAGTGGTTAGAG CTTCGTGCTT chrI:166057-166556 + 16 7.65e-09 GAGTTGGGCA CATGGCGCAGTTGGTAGCG CGCTTCCCTT chrXIV:725959-726410 - 60 1.38e-08 TCTTTGGAGG GTTGGCCGAGTGGTCTAAG GCGGCAGACT chrXII:962792-963346 - 13 1.38e-08 TCGACGGAGG GTTGGCCGAGTGGTCTAAG GCGGCAGACT chrX:424295-424736 - 27 1.38e-08 AAGATGGAGG GTTGGCCGAGTGGTCTAAG GCGGCAGACT chrIV:519560-519968 + 34 1.38e-08 TTTACGGAGG GTTGGCCGAGTGGTCTAAG GCGGCAGACT chrII:9372-9855 + 25 1.38e-08 TTCGTGGAGG GTTGGCCGAGTGGTCTAAG GCGGCAGACT chrXI:219684-220109 + 54 2.02e-08 AAATAGGGCG TGTGGCGTAGTCGGTAGCG CGCTCCCTTA chrX:197127-197602 - 48 2.02e-08 TATTAGGGCG TGTGGCGTAGTCGGTAGCG CGCTCCCTTA chrVII:774124-774633 + 26 2.02e-08 TAATTGGGCG TGTGGCGTAGTCGGTAGCG CGCTCCCTTA chrVI:204760-205207 - 40 2.02e-08 CGTTCGGGCG TGTGGCGTAGTCGGTAGCG CGCTCCCTTA chrIV:410176-410680 + 6 2.02e-08 GGGCG TGTGGCGTAGTCGGTAGCG CGCTCCCTTA chrXVI:810467-810873 + 61 2.88e-08 TTTGCGACTC CATGGCCAAGTTGGTTAAG GCGTGCGACT chrXV:487248-487710 + 15 2.88e-08 AGTTAGACTC CATGGCCAAGTTGGTTAAG GCGTGCGACT chrXV:228118-228621 + 17 2.88e-08 TATTAGACTC CATGGCCAAGTTGGTTAAG GCGTGCGACT chrXIV:632414-632885 + 5 2.88e-08 ACTC CATGGCCAAGTTGGTTAAG GCGTGCGACT chrXII:975782-976248 - 68 2.88e-08 TAAAAGACTC CATGGCCAAGTTGGTTAAG GCGTGCGACT chrVII:730951-731416 + 9 2.88e-08 AAAGACTC CATGGCCAAGTTGGTTAAG GCGTGCGACT chrVI:137262-137804 - 53 2.88e-08 TGACTGACTC CATGGCCAAGTTGGTTAAG GCGTGCGACT chrIII:127534-127909 + 50 2.88e-08 AAAATGACTC CATGGCCAAGTTGGTTAAG GCGTGCGACT chrXVI:769011-769489 - 79 3.41e-08 CTT GTTAGCTCAGTTGGTAGAG CGTTCGGCTT chrXV:353886-354327 - 34 3.41e-08 TTACTGCTTC TATGGCCAAGTTGGTAAGG CGCCACACTA chrXV:113498-114165 + 26 3.41e-08 ATTTAGCTTC TATGGCCAAGTTGGTAAGG CGCCACACTA chrXIV:560340-561170 - 37 3.41e-08 AACGGGCTTC TATGGCCAAGTTGGTAAGG CGCCACACTA chrX:58970-59422 - 3 3.41e-08 TAGAAGCTTC TATGGCCAAGTTGGTAAGG CG chrVIII:115880-116402 - 65 3.41e-08 TTAGAGCTTC TATGGCCAAGTTGGTAAGG CGCCACACTA chrVII:115249-115768 + 35 3.41e-08 ACTCATCCTT GTTAGCTCAGTTGGTAGAG CGTTCGGCTT chrIX:174843-175267 + 31 3.41e-08 TACGAGCTTC TATGGCCAAGTTGGTAAGG CGCCACACTA chrIV:434039-434550 - 69 3.41e-08 CAGAAGCTTC TATGGCCAAGTTGGTAAGG CGCCACACTA chrIV:359372-359877 + 8 3.41e-08 CATCCTT GTTAGCTCAGTTGGTAGAG CGTTCGGCTT chrII:266172-266673 + 11 3.41e-08 AAACTGCTTC TATGGCCAAGTTGGTAAGG CGCCACACTA chrXV:340090-340596 - 55 8.98e-08 ATCTGTTCCT CGTGGCCCAATGGTCACGG CGTCTGGCTA chrIV:619740-620239 - 79 8.98e-08 CCT CGTGGCCCAATGGTCACGG CGTCTGGCTA chrXVI:581839-582313 + 41 2.12e-07 AAAGAGCCTT GTTGGCGCAATCGGTAGCG CGTATGACTC chrX:414787-415254 + 1 2.12e-07 . GTTGGCGCAATCGGTAGCG CGTATGACTC chrVII:185416-186081 - 65 2.12e-07 AAATAGCCTT GTTGGCGCAATCGGTAGCG CGTATGACTC chrVII:122033-122528 + 44 2.12e-07 AATTAGCCTT GTTGGCGCAATCGGTAGCG CGTATGACTC chrVI:226549-226941 - 42 2.12e-07 AAAATGCCTT GTTGGCGCAATCGGTAGCG CGTATGACTC chrV:435574-436037 - 46 2.12e-07 TAAGAGCCTT GTTGGCGCAATCGGTAGCG CGTATGACTC chrIX:300030-300501 - 62 2.12e-07 AAATAGCCTT GTTGGCGCAATCGGTAGCG CGTATGACTC chrIV:1352293-1352736 - 51 2.12e-07 AAATAGCCTT GTTGGCGCAATCGGTAGCG CGTATGACTC chrXV:594222-594640 - 21 2.42e-07 GAAACGCGCA AGTGGTTCAGTGGTTAGAA TTTATGCTTC chrXIV:374685-375112 + 26 2.42e-07 AATAAGCGGA CTTAGCTCAGTTGGGAGAG CGCCAGACTG chrIV:1256870-1257278 - 32 2.42e-07 TCTTAGCGAA AGTGGTTCAGTGGTTAGAA TTCATGCTTC chrIV:1095139-1095685 - 76 2.42e-07 AGCGGA CTTAGCTCAGTTGGGAGAG CGCCAGACTG chrXIII:586409-586913 - 75 3.15e-07 ATGGTTT CGTGGTCTAGTCGGTTATG GCATCTGCTT chrXII:687650-688151 - 59 3.15e-07 TAATAGGTTT CGTGGTCTAGTCGGTTATG GCATCTGCTT chrXI:379481-379921 + 34 3.15e-07 TAATAGGTTT CGTGGTCTAGTCGGTTATG GCATCTGCTT chrXI:307973-308420 - 48 3.15e-07 TAAGTGGTTT CGTGGTCTAGTCGGTTATG GCATCTGCTT chrX:378122-378573 + 68 3.15e-07 TAATAGGTTT CGTGGTCTAGTCGGTTATG GCATCTGCTT chrVIII:85075-85562 - 80 3.15e-07 TT CGTGGTCTAGTCGGTTATG GCATCTGCTT chrVII:823261-823704 + 55 3.15e-07 AGAGTGGTTT CGTGGTCTAGTCGGTTATG GCATCTGCTT chrVII:412125-412591 - 36 3.15e-07 AAACTGGTTT CGTGGTCTAGTCGGTTATG GCATCTGCTT chrV:469264-469696 + 32 3.15e-07 TAATTGGTTT CGTGGTCTAGTCGGTTATG GCATCTGCTT chrXI:46568-47021 - 39 3.57e-07 ACTCAGCCCT TTTGGCCAAGTGGTAAGGC ATCGCACTCG chrXVI:622326-622837 - 77 4.57e-07 GCGGA TTTAGCTCAGTTGGGAGAG CGCCAGACTG chrXVI:560022-560504 - 53 4.57e-07 ATTGAGCGGA TTTAGCTCAGTTGGGAGAG CGCCAGACTG chrXIII:352088-352507 + 38 4.57e-07 TATAAGCGGA TTTAGCTCAGTTGGGAGAG CGCCAGACTG chrXII:628085-628663 + 64 4.57e-07 TAAGTGGTTG TTTGGCCGAGCGGTCTAAG GCGCCTGATT chrVIII:358286-358793 - 57 4.57e-07 AGTAAGCGGA TTTAGCTCAGTTGGGAGAG CGCCAGACTG chrVIII:237698-238126 - 54 4.57e-07 AGTAAGCGGA TTTAGCTCAGTTGGGAGAG CGCCAGACTG chrVII:857236-857666 - 67 4.57e-07 TAAGTGGTTG TTTGGCCGAGCGGTCTAAG GCGCCTGATT chrVII:422905-423369 + 10 4.57e-07 AAGTGGTTG TTTGGCCGAGCGGTCTAAG GCGCCTGATT chrVII:205321-205807 + 12 4.57e-07 TAAGTGGTTG TTTGGCCGAGCGGTCTAAG GCGCCTGATT chrIV:1461496-1462065 - 76 4.57e-07 TGGTTG TTTGGCCGAGCGGTCTAAG GCGCCTGATT chrII:36173-36587 + 73 4.57e-07 TGTAAGCGGA TTTAGCTCAGTTGGGAGAG CGCCAGACT chrI:180920-181466 + 3 4.57e-07 TG TTTGGCCGAGCGGTCTAAG GCGCCTGATT chrXV:464234-464700 + 38 7.28e-07 AACAAGGGCG TGTGGTCTAGTGGTATGAT TCTCGCTTTG chrXIII:195908-196392 - 47 7.28e-07 CACAAGGGCG TGTGGTCTAGTGGTATGAT TCTCGCTTTG chrVI:101144-101677 + 21 7.28e-07 AATTCGGGCG TGTGGTCTAGTGGTATGAT TCTCGCTTTG chrXVI:860122-860661 + 43 1.85e-06 AACAAGCGCA AGTGGTTTAGTGGTAAAAT CCAACGTTGC chrXVI:572007-572575 + 33 1.85e-06 ACTTCGCGCA AGTGGTTTAGTGGTAAAAT CCAACGTTGC chrXV:226425-226914 - 39 1.85e-06 ATTCAGCGCA AGTGGTTTAGTGGTAAAAT CCAACGTTGC chrXIII:183775-184192 - 12 1.85e-06 AGATCGCGCA AGTGGTTTAGTGGTAAAAT CCAACGTTGC chrX:531571-532158 + 19 1.85e-06 AGTGAGCGCA AGTGGTTTAGTGGTAAAAT CCAACGTTGC chrX:396542-397018 - 43 1.85e-06 AGTAAGCGCA AGTGGTTTAGTGGTAAAAT CCAACGTTGC chrVII:930738-931218 - 72 1.85e-06 AGTAAGCGCA AGTGGTTTAGTGGTAAAAT CCAACGTTGC chrVII:845400-845926 + 41 1.85e-06 AACAAGCGCA AGTGGTTTAGTGGTAAAAT CCAACGTTGC chrVI:162042-162423 + 51 1.85e-06 AACAAGCGCA AGTGGTTTAGTGGTAAAAT CCAACGTTGC chrIV:992614-993075 + 43 1.85e-06 TGTGAGCGCA AGTGGTTTAGTGGTAAAAT CCAACGTTGC chrIV:83304-83809 + 47 1.85e-06 ACTTAGCGCA AGTGGTTTAGTGGTAAAAT CCAACGTTGC chrXI:302694-303200 + 26 2.03e-06 AAGATGAAGC GGTGGCTCAATGGTAGAGC TTTCGACTCC chrX:415782-416287 - 29 2.03e-06 AAGTTGAAGC GGTGGCTCAATGGTAGAGC TTTCGACTCC chrVII:878607-879056 - 11 2.03e-06 AAGATGAAGC GGTGGCTCAATGGTAGAGC TTTCGACTCC chrVII:287170-287665 - 65 2.03e-06 AAGATGAAGC GGTGGCTCAATGGTAGAGC TTTCGACTCC chrXIII:572693-573162 - 55 2.44e-06 AGACAGCTTC AGTAGCTCAGTAGGAAGAG CGTCAGTCTC chrX:422672-423278 + 17 2.44e-06 TGTATGCTTC AGTAGCTCAGTAGGAAGAG CGTCAGTCTC chrX:390841-391325 - 59 2.44e-06 ATAGTGCTTC AGTAGCTCAGTAGGAAGAG CGTCAGTCTC chrVIII:466777-467273 + 20 2.44e-06 TTTTAGCCTC CTTAGCTTAGTGGTAGAGC GTTGCACTTG chrVII:1004022-1004424 + 48 2.44e-06 GGTTTGCCTC CTTAGCTTAGTGGTAGAGC GTTGCACTTG chrVII:661530-661945 + 67 2.44e-06 AATTTGCCTC CTTAGCTTAGTGGTAGAGC GTTGCACTTG chrIV:1175594-1176070 + 52 2.44e-06 ACAAAGCTTC AGTAGCTCAGTAGGAAGAG CGTCAGTCTC chrII:326574-327178 - 16 2.44e-06 TTCCGGGTCC AATGGTCCAGTGGTTCAAG ACGTCGCCTT chrVII:706918-707345 - 75 2.91e-06 AAGCTCG TATGGCGCAGTGGTAGCGC AGCAGATTGC chrII:642868-643274 - 34 2.91e-06 AGAAAGCTCG TATGGCGCAGTGGTAGCGC AGCAGATTGC chrXIII:168596-169054 + 25 3.75e-06 AGTCACTCTC GGTAGCCAAGTTGGTTTAA GGCGCAAGAC chrX:354023-354554 + 11 3.75e-06 TATCACTCTC GGTAGCCAAGTTGGTTTAA GGCGCAAGAC chrVI:210436-210900 - 66 3.75e-06 AACGACTCTC GGTAGCCAAGTTGGTTTAA GGCGCAAGAC chrXII:11029-11984 - 79 5.16e-06 AGC GGTAGTGGAGTTGGATATG GGTAATTGGA chrVII:73696-74174 + 59 6.45e-06 ATACTTGCTT CATAGTTTAGTTGTAAAAT TGAAGTTCAG chrXIV:96041-96607 - 15 6.93e-06 CACATGGGCG GTTAGTGTAGTGGTTATCA TCCCACCCTT chrVII:779395-779912 + 18 6.93e-06 ACCCCGGGCG GTTAGTGTAGTGGTTATCA TCCCACCCTT chrXVI:338727-339133 - 16 8.53e-06 TTAGCAGCGC CGTGGCGCAGTGGAAGCGC GCAGGGCTCA chrXV:710012-710399 + 51 8.53e-06 TTAGCAGCGC CGTGGCGCAGTGGAAGCGC GCAGGGCTCA chrXV:571717-572177 + 66 8.53e-06 TAAAATCCGT GATAGTTTAATGGTCAGAA TGGGCGCTTG chrXIII:463315-463871 + 16 8.53e-06 ATTTGTCCGT GATAGTTTAATGGTCAGAA TGGGCGCTTG chrXII:426900-427430 + 22 8.53e-06 TCTTATCCGT GATAGTTTAATGGTCAGAA TGGGCGCTTG chrX:517639-518097 - 43 8.53e-06 AGTTAAGCGC CGTGGCGCAGTGGAAGCGC GCAGGGCTCA chrX:355148-355733 + 71 8.53e-06 TTTCTTCCGT GATAGTTTAATGGTCAGAA TGGGCGCTTG chrX:204485-204984 + 56 8.53e-06 AAAAATCCGT GATAGTTTAATGGTCAGAA TGGGCGCTTG chrVII:544390-544933 - 14 8.53e-06 TTTCTTCCGT GATAGTTTAATGGTCAGAA TGGGCGCTTG chrVII:531438-531813 + 40 8.53e-06 TTACTTCCGT GATAGTTTAATGGTCAGAA TGGGCGCTTG chrV:99885-100363 + 64 8.53e-06 GGCTAAGCGC CGTGGCGCAGTGGAAGCGC GCAGGGCTCA chrIX:336107-336648 - 70 8.53e-06 ACAAATCCGT GATAGTTTAATGGTCAGAA TGGGCGCTTG chrIX:324041-324600 - 81 8.53e-06 T GATAGTTTAATGGTCAGAA TGGGCGCTTG chrIV:568666-569246 + 63 8.53e-06 TTTCTTCCGT GATAGTTTAATGGTCAGAA TGGGCGCTTG chrII:405651-406222 + 79 8.53e-06 TTTCTTCCGT GATAGTTTAATGGTCAGAA TGG chrXII:448499-448983 - 7 9.12e-06 GTTCCGGTCC TATAGTGTAGTGGTTATCA CTTTCG chrVIII:134081-134576 + 48 9.12e-06 GTTCCGGTCC TATAGTGTAGTGGTTATCA CTTTCGGTTT chrV:130834-131411 - 58 9.12e-06 TAAGAGGTTT TATAGTGTAGTGGTTATCA CTTTCGGTTT chrIV:802553-803004 - 51 9.12e-06 TTGTCGGTCC TATAGTGTAGTGGTTATCA CTTTCGGTTT chrIV:645001-645397 - 52 9.12e-06 GTTACGGTCC TATAGTGTAGTGGTTATCA CTTTCGGTTT chrIV:520740-521244 + 35 9.12e-06 TTTAGGGTCC TATAGTGTAGTGGTTATCA CTTTCGGTTT chrIII:168101-168606 - 46 9.12e-06 GTCCTGGTCC TATAGTGTAGTGGTTATCA CTTTCGGTTT chrII:350588-351127 + 25 9.12e-06 AAAAGGGTTT TATAGTGTAGTGGTTATCA CTTTCGGTTT chrXIII:747741-748158 - 41 1.41e-05 GACTAGCTCG CGTGGCGTAATGGCAACGC GTCTGACTTC chrXII:489303-489560 + 15 1.41e-05 TCCGATCAAC TGTAGTTAAGCTGGTAAGA GCCTGACCGA chrXII:468764-468971 + 43 1.41e-05 TCCGATCAAC TGTAGTTAAGCTGGTAAGA GCCTGACCGA chrXI:162272-162754 - 72 1.41e-05 TATTAGCTCG CGTGGCGTAATGGCAACGC GTCTGACTTC chrX:374193-374855 - 80 1.41e-05 CG CGTGGCGTAATGGCAACGC GTCTGACTTC chrXI:382204-382467 - 74 2.18e-05 CTACATAC CGTGGAGGAATGGGTGGAA CGGTTACTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGCBYAGTKGKTWRAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:259012-259500 7.3e-10 9_[-2]_72 chrXII:167709-168282 7.3e-10 56_[-2]_25 chrX:523849-524315 7.3e-10 37_[-2]_44 chrVIII:132800-133375 7.3e-10 46_[-2]_35 chrIV:980753-981259 7.3e-10 75_[-2]_6 chrI:182366-182781 7.3e-10 56_[-2]_25 chrXVI:880118-880584 1.2e-09 44_[-2]_37 chrXVI:819197-819862 1.2e-09 54_[+2]_27 chrXIV:602091-602546 1.2e-09 48_[+2]_33 chrXIV:569674-570141 1.2e-09 59_[-2]_22 chrXII:1051911-1052371 1.2e-09 29_[-2]_52 chrVII:738883-739451 1.2e-09 9_[+2]_72 chrV:551106-551573 1.2e-09 45_[-2]_36 chrV:443042-443486 1.2e-09 37_[-2]_44 chrIX:183288-183707 1.2e-09 42_[-2]_39 chrII:197222-197865 1.2e-09 5_[+2]_76 chrXVI:689348-689852 4e-09 19_[+2]_62 chrIII:227736-228209 4e-09 24_[+2]_57 chrXII:784155-784571 5e-09 45_[+2]_36 chrXII:731898-732262 6.2e-09 64_[+2]_17 chrX:617754-618160 6.2e-09 16_[+2]_65 chrXV:854006-854440 7.6e-09 62_[-2]_19 chrXII:605140-605631 7.6e-09 73_[-2]_8 chrVII:794181-794614 7.6e-09 74_[+2]_7 chrIV:884181-884647 7.6e-09 1_[+2]_80 chrI:166057-166556 7.6e-09 15_[+2]_66 chrXIV:725959-726410 1.4e-08 59_[-2]_22 chrXII:962792-963346 1.4e-08 12_[-2]_69 chrX:424295-424736 1.4e-08 26_[-2]_55 chrIV:519560-519968 1.4e-08 33_[+2]_48 chrII:9372-9855 1.4e-08 24_[+2]_57 chrXI:219684-220109 2e-08 53_[+2]_28 chrX:197127-197602 2e-08 47_[-2]_34 chrVII:774124-774633 2e-08 25_[+2]_56 chrVI:204760-205207 2e-08 39_[-2]_42 chrIV:410176-410680 2e-08 5_[+2]_76 chrXVI:810467-810873 2.9e-08 60_[+2]_21 chrXV:487248-487710 2.9e-08 14_[+2]_67 chrXV:228118-228621 2.9e-08 16_[+2]_65 chrXIV:632414-632885 2.9e-08 4_[+2]_77 chrXII:975782-976248 2.9e-08 67_[-2]_14 chrVII:730951-731416 2.9e-08 8_[+2]_73 chrVI:137262-137804 2.9e-08 52_[-2]_29 chrIII:127534-127909 2.9e-08 49_[+2]_32 chrXVI:769011-769489 3.4e-08 78_[-2]_3 chrXV:353886-354327 3.4e-08 33_[-2]_48 chrXV:113498-114165 3.4e-08 25_[+2]_56 chrXIV:560340-561170 3.4e-08 36_[-2]_45 chrX:58970-59422 3.4e-08 2_[-2]_79 chrVIII:115880-116402 3.4e-08 64_[-2]_17 chrVII:115249-115768 3.4e-08 34_[+2]_47 chrIX:174843-175267 3.4e-08 30_[+2]_51 chrIV:434039-434550 3.4e-08 68_[-2]_13 chrIV:359372-359877 3.4e-08 7_[+2]_74 chrII:266172-266673 3.4e-08 10_[+2]_71 chrXV:340090-340596 9e-08 54_[-2]_27 chrIV:619740-620239 9e-08 78_[-2]_3 chrXVI:581839-582313 2.1e-07 40_[+2]_41 chrX:414787-415254 2.1e-07 [+2]_81 chrVII:185416-186081 2.1e-07 64_[-2]_17 chrVII:122033-122528 2.1e-07 43_[+2]_38 chrVI:226549-226941 2.1e-07 41_[-2]_40 chrV:435574-436037 2.1e-07 45_[-2]_36 chrIX:300030-300501 2.1e-07 61_[-2]_20 chrIV:1352293-1352736 2.1e-07 50_[-2]_31 chrXV:594222-594640 2.4e-07 20_[-2]_61 chrXIV:374685-375112 2.4e-07 25_[+2]_56 chrIV:1256870-1257278 2.4e-07 31_[-2]_50 chrIV:1095139-1095685 2.4e-07 75_[-2]_6 chrXIII:586409-586913 3.1e-07 74_[-2]_7 chrXII:687650-688151 3.1e-07 58_[-2]_23 chrXI:379481-379921 3.1e-07 33_[+2]_48 chrXI:307973-308420 3.1e-07 47_[-2]_34 chrX:378122-378573 3.1e-07 67_[+2]_14 chrVIII:85075-85562 3.1e-07 79_[-2]_2 chrVII:823261-823704 3.1e-07 54_[+2]_27 chrVII:412125-412591 3.1e-07 35_[-2]_46 chrV:469264-469696 3.1e-07 31_[+2]_50 chrXI:46568-47021 3.6e-07 38_[-2]_43 chrXVI:622326-622837 4.6e-07 76_[-2]_5 chrXVI:560022-560504 4.6e-07 52_[-2]_29 chrXIII:352088-352507 4.6e-07 37_[+2]_44 chrXII:628085-628663 4.6e-07 63_[+2]_18 chrVIII:358286-358793 4.6e-07 56_[-2]_25 chrVIII:237698-238126 4.6e-07 53_[-2]_28 chrVII:857236-857666 4.6e-07 66_[-2]_15 chrVII:422905-423369 4.6e-07 9_[+2]_72 chrVII:205321-205807 4.6e-07 11_[+2]_70 chrIV:1461496-1462065 4.6e-07 75_[-2]_6 chrII:36173-36587 4.6e-07 72_[+2]_9 chrI:180920-181466 4.6e-07 2_[+2]_79 chrXV:464234-464700 7.3e-07 37_[+2]_44 chrXIII:195908-196392 7.3e-07 46_[-2]_35 chrVI:101144-101677 7.3e-07 20_[+2]_61 chrXVI:860122-860661 1.8e-06 42_[+2]_39 chrXVI:572007-572575 1.8e-06 32_[+2]_49 chrXV:226425-226914 1.8e-06 38_[-2]_43 chrXIII:183775-184192 1.8e-06 11_[-2]_70 chrX:531571-532158 1.8e-06 18_[+2]_63 chrX:396542-397018 1.8e-06 42_[-2]_39 chrVII:930738-931218 1.8e-06 71_[-2]_10 chrVII:845400-845926 1.8e-06 40_[+2]_41 chrVI:162042-162423 1.8e-06 50_[+2]_31 chrIV:992614-993075 1.8e-06 42_[+2]_39 chrIV:83304-83809 1.8e-06 46_[+2]_35 chrXI:302694-303200 2e-06 25_[+2]_56 chrX:415782-416287 2e-06 28_[-2]_53 chrVII:878607-879056 2e-06 10_[-2]_71 chrVII:287170-287665 2e-06 64_[-2]_17 chrXIII:572693-573162 2.4e-06 54_[-2]_27 chrX:422672-423278 2.4e-06 16_[+2]_65 chrX:390841-391325 2.4e-06 58_[-2]_23 chrVIII:466777-467273 2.4e-06 19_[+2]_62 chrVII:1004022-1004424 2.4e-06 47_[+2]_34 chrVII:661530-661945 2.4e-06 66_[+2]_15 chrIV:1175594-1176070 2.4e-06 51_[+2]_30 chrII:326574-327178 2.4e-06 15_[-2]_66 chrVII:706918-707345 2.9e-06 74_[-2]_7 chrII:642868-643274 2.9e-06 33_[-2]_48 chrXIII:168596-169054 3.8e-06 24_[+2]_57 chrX:354023-354554 3.8e-06 10_[+2]_71 chrVI:210436-210900 3.8e-06 65_[-2]_16 chrXII:11029-11984 5.2e-06 78_[-2]_3 chrVII:73696-74174 6.4e-06 58_[+2]_23 chrXIV:96041-96607 6.9e-06 14_[-2]_67 chrVII:779395-779912 6.9e-06 17_[+2]_64 chrXVI:338727-339133 8.5e-06 15_[-2]_66 chrXV:710012-710399 8.5e-06 50_[+2]_31 chrXV:571717-572177 8.5e-06 65_[+2]_16 chrXIII:463315-463871 8.5e-06 15_[+2]_66 chrXII:426900-427430 8.5e-06 21_[+2]_60 chrX:517639-518097 8.5e-06 42_[-2]_39 chrX:355148-355733 8.5e-06 70_[+2]_11 chrX:204485-204984 8.5e-06 55_[+2]_26 chrVII:544390-544933 8.5e-06 13_[-2]_68 chrVII:531438-531813 8.5e-06 39_[+2]_42 chrV:99885-100363 8.5e-06 63_[+2]_18 chrIX:336107-336648 8.5e-06 69_[-2]_12 chrIX:324041-324600 8.5e-06 80_[-2]_1 chrIV:568666-569246 8.5e-06 62_[+2]_19 chrII:405651-406222 8.5e-06 78_[+2]_3 chrXII:448499-448983 9.1e-06 6_[-2]_75 chrVIII:134081-134576 9.1e-06 47_[+2]_34 chrV:130834-131411 9.1e-06 57_[-2]_24 chrIV:802553-803004 9.1e-06 50_[-2]_31 chrIV:645001-645397 9.1e-06 51_[-2]_30 chrIV:520740-521244 9.1e-06 34_[+2]_47 chrIII:168101-168606 9.1e-06 45_[-2]_36 chrII:350588-351127 9.1e-06 24_[+2]_57 chrXIII:747741-748158 1.4e-05 40_[-2]_41 chrXII:489303-489560 1.4e-05 14_[+2]_67 chrXII:468764-468971 1.4e-05 42_[+2]_39 chrXI:162272-162754 1.4e-05 71_[-2]_10 chrX:374193-374855 1.4e-05 79_[-2]_2 chrXI:382204-382467 2.2e-05 73_[-2]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGCBYAGTKGKTWRAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BDTGGCBYAGTKGKTWRAG width=19 seqs=155 chrXIII:259012-259500 ( 10) CTTGGCCGAGTGGTTAAGG 1 chrXII:167709-168282 ( 57) CTTGGCCGAGTGGTTAAGG 1 chrX:523849-524315 ( 38) CTTGGCCGAGTGGTTAAGG 1 chrVIII:132800-133375 ( 47) CTTGGCCGAGTGGTTAAGG 1 chrIV:980753-981259 ( 76) CTTGGCCGAGTGGTTAAGG 1 chrI:182366-182781 ( 57) CTTGGCCGAGTGGTTAAGG 1 chrXVI:880118-880584 ( 45) CTTGGCCCAGTTGGTTAAG 1 chrXVI:819197-819862 ( 55) CTTGGCCCAGTTGGTTAAG 1 chrXIV:602091-602546 ( 49) CTTGGCCCAGTTGGTTAAG 1 chrXIV:569674-570141 ( 60) CTTGGCCCAGTTGGTTAAG 1 chrXII:1051911-1052371 ( 30) CTTGGCCCAGTTGGTTAAG 1 chrVII:738883-739451 ( 10) CTTGGCCCAGTTGGTTAAG 1 chrV:551106-551573 ( 46) CTTGGCCCAGTTGGTTAAG 1 chrV:443042-443486 ( 38) CTTGGCCCAGTTGGTTAAG 1 chrIX:183288-183707 ( 43) CTTGGCCCAGTTGGTTAAG 1 chrII:197222-197865 ( 6) CTTGGCCCAGTTGGTTAAG 1 chrXVI:689348-689852 ( 20) TATGGCCGAGTGGTTAAGG 1 chrIII:227736-228209 ( 25) TATGGCCGAGTGGTTAAGG 1 chrXII:784155-784571 ( 46) AGTGGCCGAGTGGTTAAGG 1 chrXII:731898-732262 ( 65) TTTGGCCGAGTGGTTTAAG 1 chrX:617754-618160 ( 17) TTTGGCCGAGTGGTTTAAG 1 chrXV:854006-854440 ( 63) CATGGCGCAGTTGGTAGCG 1 chrXII:605140-605631 ( 74) TGTAGCTCAGTGGTTAGAG 1 chrVII:794181-794614 ( 75) CATGGCGCAGTTGGTAGCG 1 chrIV:884181-884647 ( 2) TGTAGCTCAGTGGTTAGAG 1 chrI:166057-166556 ( 16) CATGGCGCAGTTGGTAGCG 1 chrXIV:725959-726410 ( 60) GTTGGCCGAGTGGTCTAAG 1 chrXII:962792-963346 ( 13) GTTGGCCGAGTGGTCTAAG 1 chrX:424295-424736 ( 27) GTTGGCCGAGTGGTCTAAG 1 chrIV:519560-519968 ( 34) GTTGGCCGAGTGGTCTAAG 1 chrII:9372-9855 ( 25) GTTGGCCGAGTGGTCTAAG 1 chrXI:219684-220109 ( 54) TGTGGCGTAGTCGGTAGCG 1 chrX:197127-197602 ( 48) TGTGGCGTAGTCGGTAGCG 1 chrVII:774124-774633 ( 26) TGTGGCGTAGTCGGTAGCG 1 chrVI:204760-205207 ( 40) TGTGGCGTAGTCGGTAGCG 1 chrIV:410176-410680 ( 6) TGTGGCGTAGTCGGTAGCG 1 chrXVI:810467-810873 ( 61) CATGGCCAAGTTGGTTAAG 1 chrXV:487248-487710 ( 15) CATGGCCAAGTTGGTTAAG 1 chrXV:228118-228621 ( 17) CATGGCCAAGTTGGTTAAG 1 chrXIV:632414-632885 ( 5) CATGGCCAAGTTGGTTAAG 1 chrXII:975782-976248 ( 68) CATGGCCAAGTTGGTTAAG 1 chrVII:730951-731416 ( 9) CATGGCCAAGTTGGTTAAG 1 chrVI:137262-137804 ( 53) CATGGCCAAGTTGGTTAAG 1 chrIII:127534-127909 ( 50) CATGGCCAAGTTGGTTAAG 1 chrXVI:769011-769489 ( 79) GTTAGCTCAGTTGGTAGAG 1 chrXV:353886-354327 ( 34) TATGGCCAAGTTGGTAAGG 1 chrXV:113498-114165 ( 26) TATGGCCAAGTTGGTAAGG 1 chrXIV:560340-561170 ( 37) TATGGCCAAGTTGGTAAGG 1 chrX:58970-59422 ( 3) TATGGCCAAGTTGGTAAGG 1 chrVIII:115880-116402 ( 65) TATGGCCAAGTTGGTAAGG 1 chrVII:115249-115768 ( 35) GTTAGCTCAGTTGGTAGAG 1 chrIX:174843-175267 ( 31) TATGGCCAAGTTGGTAAGG 1 chrIV:434039-434550 ( 69) TATGGCCAAGTTGGTAAGG 1 chrIV:359372-359877 ( 8) GTTAGCTCAGTTGGTAGAG 1 chrII:266172-266673 ( 11) TATGGCCAAGTTGGTAAGG 1 chrXV:340090-340596 ( 55) CGTGGCCCAATGGTCACGG 1 chrIV:619740-620239 ( 79) CGTGGCCCAATGGTCACGG 1 chrXVI:581839-582313 ( 41) GTTGGCGCAATCGGTAGCG 1 chrX:414787-415254 ( 1) GTTGGCGCAATCGGTAGCG 1 chrVII:185416-186081 ( 65) GTTGGCGCAATCGGTAGCG 1 chrVII:122033-122528 ( 44) GTTGGCGCAATCGGTAGCG 1 chrVI:226549-226941 ( 42) GTTGGCGCAATCGGTAGCG 1 chrV:435574-436037 ( 46) GTTGGCGCAATCGGTAGCG 1 chrIX:300030-300501 ( 62) GTTGGCGCAATCGGTAGCG 1 chrIV:1352293-1352736 ( 51) GTTGGCGCAATCGGTAGCG 1 chrXV:594222-594640 ( 21) AGTGGTTCAGTGGTTAGAA 1 chrXIV:374685-375112 ( 26) CTTAGCTCAGTTGGGAGAG 1 chrIV:1256870-1257278 ( 32) AGTGGTTCAGTGGTTAGAA 1 chrIV:1095139-1095685 ( 76) CTTAGCTCAGTTGGGAGAG 1 chrXIII:586409-586913 ( 75) CGTGGTCTAGTCGGTTATG 1 chrXII:687650-688151 ( 59) CGTGGTCTAGTCGGTTATG 1 chrXI:379481-379921 ( 34) CGTGGTCTAGTCGGTTATG 1 chrXI:307973-308420 ( 48) CGTGGTCTAGTCGGTTATG 1 chrX:378122-378573 ( 68) CGTGGTCTAGTCGGTTATG 1 chrVIII:85075-85562 ( 80) CGTGGTCTAGTCGGTTATG 1 chrVII:823261-823704 ( 55) CGTGGTCTAGTCGGTTATG 1 chrVII:412125-412591 ( 36) CGTGGTCTAGTCGGTTATG 1 chrV:469264-469696 ( 32) CGTGGTCTAGTCGGTTATG 1 chrXI:46568-47021 ( 39) TTTGGCCAAGTGGTAAGGC 1 chrXVI:622326-622837 ( 77) TTTAGCTCAGTTGGGAGAG 1 chrXVI:560022-560504 ( 53) TTTAGCTCAGTTGGGAGAG 1 chrXIII:352088-352507 ( 38) TTTAGCTCAGTTGGGAGAG 1 chrXII:628085-628663 ( 64) TTTGGCCGAGCGGTCTAAG 1 chrVIII:358286-358793 ( 57) TTTAGCTCAGTTGGGAGAG 1 chrVIII:237698-238126 ( 54) TTTAGCTCAGTTGGGAGAG 1 chrVII:857236-857666 ( 67) TTTGGCCGAGCGGTCTAAG 1 chrVII:422905-423369 ( 10) TTTGGCCGAGCGGTCTAAG 1 chrVII:205321-205807 ( 12) TTTGGCCGAGCGGTCTAAG 1 chrIV:1461496-1462065 ( 76) TTTGGCCGAGCGGTCTAAG 1 chrII:36173-36587 ( 73) TTTAGCTCAGTTGGGAGAG 1 chrI:180920-181466 ( 3) TTTGGCCGAGCGGTCTAAG 1 chrXV:464234-464700 ( 38) TGTGGTCTAGTGGTATGAT 1 chrXIII:195908-196392 ( 47) TGTGGTCTAGTGGTATGAT 1 chrVI:101144-101677 ( 21) TGTGGTCTAGTGGTATGAT 1 chrXVI:860122-860661 ( 43) AGTGGTTTAGTGGTAAAAT 1 chrXVI:572007-572575 ( 33) AGTGGTTTAGTGGTAAAAT 1 chrXV:226425-226914 ( 39) AGTGGTTTAGTGGTAAAAT 1 chrXIII:183775-184192 ( 12) AGTGGTTTAGTGGTAAAAT 1 chrX:531571-532158 ( 19) AGTGGTTTAGTGGTAAAAT 1 chrX:396542-397018 ( 43) AGTGGTTTAGTGGTAAAAT 1 chrVII:930738-931218 ( 72) AGTGGTTTAGTGGTAAAAT 1 chrVII:845400-845926 ( 41) AGTGGTTTAGTGGTAAAAT 1 chrVI:162042-162423 ( 51) AGTGGTTTAGTGGTAAAAT 1 chrIV:992614-993075 ( 43) AGTGGTTTAGTGGTAAAAT 1 chrIV:83304-83809 ( 47) AGTGGTTTAGTGGTAAAAT 1 chrXI:302694-303200 ( 26) GGTGGCTCAATGGTAGAGC 1 chrX:415782-416287 ( 29) GGTGGCTCAATGGTAGAGC 1 chrVII:878607-879056 ( 11) GGTGGCTCAATGGTAGAGC 1 chrVII:287170-287665 ( 65) GGTGGCTCAATGGTAGAGC 1 chrXIII:572693-573162 ( 55) AGTAGCTCAGTAGGAAGAG 1 chrX:422672-423278 ( 17) AGTAGCTCAGTAGGAAGAG 1 chrX:390841-391325 ( 59) AGTAGCTCAGTAGGAAGAG 1 chrVIII:466777-467273 ( 20) CTTAGCTTAGTGGTAGAGC 1 chrVII:1004022-1004424 ( 48) CTTAGCTTAGTGGTAGAGC 1 chrVII:661530-661945 ( 67) CTTAGCTTAGTGGTAGAGC 1 chrIV:1175594-1176070 ( 52) AGTAGCTCAGTAGGAAGAG 1 chrII:326574-327178 ( 16) AATGGTCCAGTGGTTCAAG 1 chrVII:706918-707345 ( 75) TATGGCGCAGTGGTAGCGC 1 chrII:642868-643274 ( 34) TATGGCGCAGTGGTAGCGC 1 chrXIII:168596-169054 ( 25) GGTAGCCAAGTTGGTTTAA 1 chrX:354023-354554 ( 11) GGTAGCCAAGTTGGTTTAA 1 chrVI:210436-210900 ( 66) GGTAGCCAAGTTGGTTTAA 1 chrXII:11029-11984 ( 79) GGTAGTGGAGTTGGATATG 1 chrVII:73696-74174 ( 59) CATAGTTTAGTTGTAAAAT 1 chrXIV:96041-96607 ( 15) GTTAGTGTAGTGGTTATCA 1 chrVII:779395-779912 ( 18) GTTAGTGTAGTGGTTATCA 1 chrXVI:338727-339133 ( 16) CGTGGCGCAGTGGAAGCGC 1 chrXV:710012-710399 ( 51) CGTGGCGCAGTGGAAGCGC 1 chrXV:571717-572177 ( 66) GATAGTTTAATGGTCAGAA 1 chrXIII:463315-463871 ( 16) GATAGTTTAATGGTCAGAA 1 chrXII:426900-427430 ( 22) GATAGTTTAATGGTCAGAA 1 chrX:517639-518097 ( 43) CGTGGCGCAGTGGAAGCGC 1 chrX:355148-355733 ( 71) GATAGTTTAATGGTCAGAA 1 chrX:204485-204984 ( 56) GATAGTTTAATGGTCAGAA 1 chrVII:544390-544933 ( 14) GATAGTTTAATGGTCAGAA 1 chrVII:531438-531813 ( 40) GATAGTTTAATGGTCAGAA 1 chrV:99885-100363 ( 64) CGTGGCGCAGTGGAAGCGC 1 chrIX:336107-336648 ( 70) GATAGTTTAATGGTCAGAA 1 chrIX:324041-324600 ( 81) GATAGTTTAATGGTCAGAA 1 chrIV:568666-569246 ( 63) GATAGTTTAATGGTCAGAA 1 chrII:405651-406222 ( 79) GATAGTTTAATGGTCAGAA 1 chrXII:448499-448983 ( 7) TATAGTGTAGTGGTTATCA 1 chrVIII:134081-134576 ( 48) TATAGTGTAGTGGTTATCA 1 chrV:130834-131411 ( 58) TATAGTGTAGTGGTTATCA 1 chrIV:802553-803004 ( 51) TATAGTGTAGTGGTTATCA 1 chrIV:645001-645397 ( 52) TATAGTGTAGTGGTTATCA 1 chrIV:520740-521244 ( 35) TATAGTGTAGTGGTTATCA 1 chrIII:168101-168606 ( 46) TATAGTGTAGTGGTTATCA 1 chrII:350588-351127 ( 25) TATAGTGTAGTGGTTATCA 1 chrXIII:747741-748158 ( 41) CGTGGCGTAATGGCAACGC 1 chrXII:489303-489560 ( 15) TGTAGTTAAGCTGGTAAGA 1 chrXII:468764-468971 ( 43) TGTAGTTAAGCTGGTAAGA 1 chrXI:162272-162754 ( 72) CGTGGCGTAATGGCAACGC 1 chrX:374193-374855 ( 80) CGTGGCGTAATGGCAACGC 1 chrXI:382204-382467 ( 74) CGTGGAGGAATGGGTGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGCBYAGTKGKTWRAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 46740 bayes= 9.14876 E= 7.9e-313 -136 85 36 -5 -15 -1392 98 15 -1392 -1392 -1392 167 -2 -1392 189 -1392 -1392 -1392 243 -1392 -560 184 -1392 7 -1392 122 36 7 -115 88 -26 20 167 -1392 -1392 -1392 -75 -1392 213 -1392 -1392 -185 -1392 159 -360 -39 151 -5 -1392 -1392 243 -1392 -360 -326 134 62 -40 -26 -185 82 93 -485 -104 -5 72 -139 82 -191 73 -15 40 -228 -75 -76 171 -170 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGCBYAGTKGKTWRAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 155 E= 7.9e-313 0.122581 0.335484 0.238710 0.303226 0.283871 0.000000 0.367742 0.348387 0.000000 0.000000 0.000000 1.000000 0.309677 0.000000 0.690323 0.000000 0.000000 0.000000 1.000000 0.000000 0.006452 0.664516 0.000000 0.329032 0.000000 0.432258 0.238710 0.329032 0.141935 0.341935 0.154839 0.361290 1.000000 0.000000 0.000000 0.000000 0.187097 0.000000 0.812903 0.000000 0.000000 0.051613 0.000000 0.948387 0.025806 0.141935 0.529032 0.303226 0.000000 0.000000 1.000000 0.000000 0.025806 0.019355 0.470968 0.483871 0.238710 0.154839 0.051613 0.554839 0.600000 0.006452 0.090323 0.303226 0.516129 0.070968 0.329032 0.083871 0.522581 0.167742 0.245161 0.064516 0.187097 0.109677 0.606452 0.096774 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGCBYAGTKGKTWRAG MEME-2 regular expression -------------------------------------------------------------------------------- [CTG][GTA]T[GA]G[CT][CTG][TC]AGT[GT]G[TG][TA][AT][AG][AG]G -------------------------------------------------------------------------------- Time 596.10 secs. ******************************************************************************** ******************************************************************************** MOTIF RCACCCATACAYCNY MEME-3 width = 15 sites = 75 llr = 872 E-value = 3.4e-075 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCACCCATACAYCNY MEME-3 Description -------------------------------------------------------------------------------- Simplified A 529:::717:8:141 pos.-specific C 18:7aa:2:a25625 probability G 3:1:::3:2::::21 matrix T 1::3:::71::5323 bits 2.4 * 2.2 ** * 1.9 ** * 1.7 ** * Relative 1.5 **** * Entropy 1.2 ***** ** (16.8 bits) 1.0 ****** *** 0.7 ****** ***** 0.5 ************* * 0.2 ************* * 0.0 --------------- Multilevel ACACCCATACACCAC consensus G T GCG CTTTT sequence C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACCCATACAYCNY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrXV:639231-639422 - 39 2.67e-09 GACTACTTTT ACACCCGTACACCAC ACATACAACC chrX:690603-690803 + 62 2.67e-09 GGTCATCAAC ACACCCGTACACCAC CATGTGCGTT chrXIII:5334-5775 + 39 3.81e-09 ATATACACCC ACACCCACACACCAC ACCCACACCC chrXII:5479-5926 + 14 3.81e-09 TATATACACC ACACCCACACACCAC ACCCACACCA chrVIII:562282-562595 - 76 3.81e-09 ACACACACCC ACACCCACACACCAC ACCCACACTT chrVII:371246-371488 + 38 1.43e-08 AAAAATACCG GCACCCATGCACCTC ACACCGCCGC chrV:69116-69313 - 14 1.43e-08 AGCCGAGCAT GCACCCGTACCCCAC AAAGCTTCGC chrV:6165-6609 + 12 3.16e-08 ACCCACACCC ACACCCACACACCAT GCTCACCTTC chrXVI:866482-866741 - 25 5.54e-08 GAACGGAAAT ACACCCATACACCAA ACCTCTGTGA chrII:181321-181643 + 63 5.54e-08 CCTTTACAAA GCACCCATACATTAC ATTGAATACA chrX:265375-265798 - 76 6.47e-08 AGTCTTGATT GCACCCACACCTCGC ATTTTGTGCA chrX:160040-160267 + 71 6.47e-08 AATGTGTGAC ACACCCATACCCCAT AATGTTGCAC chrIV:538981-539217 + 56 6.47e-08 ATGAATTATC ACACCCACACCCCTC ATTCAATCCT chrIV:125316-125595 - 71 9.18e-08 TTGGGAACTT GAACCCATACACCGC ACCAAATTAT chrVI:95482-95856 - 15 1.27e-07 AATCAGTCAT GCACCCACACACCGG ACTGCGTATA chrVII:291669-291933 + 45 1.48e-07 ACATGTTAAA GAACCCACACACCAC ACGCGCGAGA chrV:85130-85452 + 59 1.48e-07 GTGATATCAT CCACCCATACCCCTC GATGTATTCC chrXIII:145875-146284 + 55 1.99e-07 GCATTTTTGT ACATCCATACACCAT ACACCATACA chrIII:163475-163878 - 19 2.31e-07 TTAAATTACC GCACCCACGCACCCA ACCGCGGCTG chrXII:651022-651257 + 51 3.05e-07 AATTATCTCA ACACCCACACATTTC TCATGGTAGC chrX:703254-703630 - 57 3.05e-07 ACGCGTGGAA GCACCCATGCATCCA CTATTTATTT chrVII:726417-726778 + 40 3.99e-07 AATTAACTGT ACACCCATACCCTAT ATACACCCAT chrI:81916-82280 - 60 3.99e-07 AACTGTTGGT ACATCCGTGCACCTC CGCTAGATGA chrXIII:302858-303113 - 28 4.52e-07 GCGCATATGG GCGCCCACACCCCAC ACCCCTGGAT chrVII:856756-856964 - 52 4.52e-07 TTGAGGGTAC CCGCCCATACACCGC ACCAATGGAA chrIX:254231-254543 - 19 4.52e-07 GCGAGCTTCC GCACCCACACATTCT AATTGCCGCG chrXV:1025706-1026069 + 39 5.14e-07 CATATGCTGA ACACCCATTCATCAC GTGTAATTGG chrXV:968134-968447 - 27 5.14e-07 CGAGCAGCGC ACGCCCACGCACCCC ACGCTTTTGA chrIV:411262-411661 + 24 5.14e-07 AACAAATCAA ACACCCACACCCCGG GCACCCAAAG chrXII:903391-903655 + 49 5.79e-07 TAGAAGCATT GGACCCATGCACCAC ATGCATTAGG chrVIII:148929-149284 - 24 6.52e-07 CCATACATTT TCACCCATGCACCAT TGGATTATAA chrX:391840-392092 + 78 9.28e-07 CACACGCCCC ACACCCAGACCTCCC TGCGAGCG chrVIII:505821-506198 - 40 9.28e-07 AGACAATTAT GCATCCATACATTTC ACCCAGACAT chrIV:358021-358454 - 60 9.28e-07 GGTGTACACA CCACCCATACATTAT CTGACAAGGA chrXV:216253-216677 + 44 1.16e-06 GAACATCCGA GCACCCGCGCCTTCC TCAACCCAGG chrII:415507-415892 - 32 1.16e-06 TTCCTTTTTT ACACCCATGCATTTT GTCATCCAGA chrXV:167987-168499 + 14 1.29e-06 GTGTTTAAAG CCGCCCACACATCAC ATTGAGAACG chrXII:1028200-1028576 + 60 1.44e-06 AGACAAAATA TCACCCATGCACCAA AATGTATGGG chrX:607791-608160 + 71 1.44e-06 TGCCAACCCT CCATCCATACATCCT TTTTAACCCA chrXVI:378664-379015 - 24 1.60e-06 AGTTCTCATT GAACCCATACATTTC AACTATTTTT chrXII:932085-932510 - 18 1.97e-06 ATACATCCGT ACATCCGTACATCCG TACATCTGTA chrXI:382204-382467 + 20 1.97e-06 TGCTGCTGTT GCATCCGGACATCAC ACCCAACACA chrVIII:175071-175387 + 3 1.97e-06 TG AGACCCATACATCAT GAAACTCCTT chrV:396169-396582 + 54 2.18e-06 CCTGTTGTAT ACATCCGTACACTTT TGTGAACCCA chrII:44991-45339 + 55 2.18e-06 AGACAATCAT GCATCCGTACATTCT ATGTATGTTT chrXV:161095-161396 - 49 2.41e-06 TCTGGCAACC AAACCCATACATCGG GATTCCTATA chrXV:79709-80125 - 79 2.41e-06 CATGTAA ACACCCGTACATATT AAATAAGTGA chrXI:67796-68046 + 42 2.41e-06 ACCCGTGCTG AAATCCGTGCACCGC ATCAAATTTT chrVII:1000363-1000583 + 35 2.41e-06 CACTAGGATA GCACCCAAACACCTG CATATTTGGA chrXVI:731895-732306 + 54 2.92e-06 CATCGTCAGT ACACCCATACCTTTA GGATGGTTGG chrXIII:224058-224389 - 15 2.92e-06 ACTGAATTTT ACATCCATACATTTT TTTGAAATTT chrX:90059-90435 + 64 3.85e-06 CTGGACATTC TCACCCATACATGGC CTTGTTTTTT chrXV:505048-505489 + 76 4.22e-06 CATTCATTTC AAACCCATACACAAT GAACCTTATC chrXVI:699896-700701 + 12 5.03e-06 CCACTTCAAA ACACCCAAGCACAGC ATACTAAATT chrXV:901435-901654 - 44 5.03e-06 TCGGGACTGT TCACCCGTACATTTT ACGTTTCCGA chrIV:1278651-1279002 - 2 5.48e-06 GTCTCCGCAG GCATCCGTGCATGGC A chrXII:522154-522442 + 55 6.49e-06 TATTAACTAA ACATCCGTACACAAA AGGTTTTCCA chrXV:978826-979124 - 11 8.28e-06 CGGTGTCGTA GAACCCATTCATCCT TGTGTATACG chrII:165078-165415 + 61 8.28e-06 ATTACGAATC TAGCCCATACACCGC GTTAGAGCAC chrXII:424211-424437 + 34 9.72e-06 GTAAGTCGCT ACACACGTACATTGC TGTGGTGCAC chrVII:788310-788747 - 49 1.05e-05 ATTCCTTACA ACATCCGTGCATACT CTAAACCCAA chrX:651210-651629 + 52 1.13e-05 TTATACAACA ACACCCATATACCCA TAATTATTCT chrVIII:296780-297272 + 81 1.22e-05 ACAATTTCGT CCACCAGTACATCAC AGCAT chrXII:370573-370910 + 2 1.32e-05 A GTATCCGCACACCGC AGCGTTAGTG chrIV:1256870-1257278 + 1 1.32e-05 . GAACCCGGGCCCCAT GCTTGGGAAG chrXI:99755-99940 + 53 1.42e-05 CCATGCCCGT GCACCCACGGCTCCT CGGAGGCCGG chrXII:241585-242022 + 54 1.53e-05 TTCCCTTTTT ACATCCGTACATATA AAATGTAAAC chrVII:479183-482957 + 43 2.34e-05 GTCTCTTGGT GGATCCATACATGGC ATAACACCCA chrIX:98208-100032 - 47 2.34e-05 TTTTGAATGA GCATCCATTCATTCA TCAATAATAA chrXIV:229610-230726 + 11 2.51e-05 ATTATAAGAT CCACCCGTTCCTACC AAGACCTTCC chrXIV:63118-63587 - 14 2.51e-05 ATACTACTTT ACATCCGAACATTTT AGCAACCCAC chrXIV:241405-241750 + 73 3.26e-05 TAAACAAAAC AAACCCATAGCCCAA AAGGTAGTAA chrXII:1018847-1019401 - 67 3.26e-05 GGAAACGTTG AAACCCAAACATTAA TATATTTTAT chrV:362146-362495 + 80 3.95e-05 CAAGAAATTT AAACCCATACAATAT ATTTCA chrV:354700-355402 - 22 5.06e-05 GCTCCTAACC CCATACATACACTGT ATGATGTCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACCCATACAYCNY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:639231-639422 2.7e-09 38_[-3]_47 chrX:690603-690803 2.7e-09 61_[+3]_24 chrXIII:5334-5775 3.8e-09 38_[+3]_47 chrXII:5479-5926 3.8e-09 13_[+3]_72 chrVIII:562282-562595 3.8e-09 75_[-3]_10 chrVII:371246-371488 1.4e-08 37_[+3]_48 chrV:69116-69313 1.4e-08 13_[-3]_72 chrV:6165-6609 3.2e-08 11_[+3]_74 chrXVI:866482-866741 5.5e-08 24_[-3]_61 chrII:181321-181643 5.5e-08 62_[+3]_23 chrX:265375-265798 6.5e-08 75_[-3]_10 chrX:160040-160267 6.5e-08 70_[+3]_15 chrIV:538981-539217 6.5e-08 55_[+3]_30 chrIV:125316-125595 9.2e-08 70_[-3]_15 chrVI:95482-95856 1.3e-07 14_[-3]_71 chrVII:291669-291933 1.5e-07 44_[+3]_41 chrV:85130-85452 1.5e-07 58_[+3]_27 chrXIII:145875-146284 2e-07 54_[+3]_31 chrIII:163475-163878 2.3e-07 18_[-3]_67 chrXII:651022-651257 3e-07 50_[+3]_35 chrX:703254-703630 3e-07 56_[-3]_29 chrVII:726417-726778 4e-07 39_[+3]_46 chrI:81916-82280 4e-07 59_[-3]_26 chrXIII:302858-303113 4.5e-07 27_[-3]_58 chrVII:856756-856964 4.5e-07 51_[-3]_34 chrIX:254231-254543 4.5e-07 18_[-3]_67 chrXV:1025706-1026069 5.1e-07 38_[+3]_47 chrXV:968134-968447 5.1e-07 26_[-3]_59 chrIV:411262-411661 5.1e-07 23_[+3]_62 chrXII:903391-903655 5.8e-07 48_[+3]_37 chrVIII:148929-149284 6.5e-07 23_[-3]_62 chrX:391840-392092 9.3e-07 77_[+3]_8 chrVIII:505821-506198 9.3e-07 39_[-3]_46 chrIV:358021-358454 9.3e-07 59_[-3]_26 chrXV:216253-216677 1.2e-06 43_[+3]_42 chrII:415507-415892 1.2e-06 31_[-3]_54 chrXV:167987-168499 1.3e-06 13_[+3]_72 chrXII:1028200-1028576 1.4e-06 59_[+3]_26 chrX:607791-608160 1.4e-06 70_[+3]_15 chrXVI:378664-379015 1.6e-06 23_[-3]_62 chrXII:932085-932510 2e-06 17_[-3]_68 chrXI:382204-382467 2e-06 19_[+3]_66 chrVIII:175071-175387 2e-06 2_[+3]_83 chrV:396169-396582 2.2e-06 53_[+3]_32 chrII:44991-45339 2.2e-06 54_[+3]_31 chrXV:161095-161396 2.4e-06 48_[-3]_37 chrXV:79709-80125 2.4e-06 78_[-3]_7 chrXI:67796-68046 2.4e-06 41_[+3]_44 chrVII:1000363-1000583 2.4e-06 34_[+3]_51 chrXVI:731895-732306 2.9e-06 53_[+3]_32 chrXIII:224058-224389 2.9e-06 14_[-3]_71 chrX:90059-90435 3.9e-06 63_[+3]_22 chrXV:505048-505489 4.2e-06 75_[+3]_10 chrXVI:699896-700701 5e-06 11_[+3]_74 chrXV:901435-901654 5e-06 43_[-3]_42 chrIV:1278651-1279002 5.5e-06 1_[-3]_84 chrXII:522154-522442 6.5e-06 54_[+3]_31 chrXV:978826-979124 8.3e-06 10_[-3]_75 chrII:165078-165415 8.3e-06 60_[+3]_25 chrXII:424211-424437 9.7e-06 33_[+3]_52 chrVII:788310-788747 1.1e-05 48_[-3]_37 chrX:651210-651629 1.1e-05 51_[+3]_34 chrVIII:296780-297272 1.2e-05 80_[+3]_5 chrXII:370573-370910 1.3e-05 1_[+3]_84 chrIV:1256870-1257278 1.3e-05 [+3]_85 chrXI:99755-99940 1.4e-05 52_[+3]_33 chrXII:241585-242022 1.5e-05 53_[+3]_32 chrVII:479183-482957 2.3e-05 42_[+3]_43 chrIX:98208-100032 2.3e-05 46_[-3]_39 chrXIV:229610-230726 2.5e-05 10_[+3]_75 chrXIV:63118-63587 2.5e-05 13_[-3]_72 chrXIV:241405-241750 3.3e-05 72_[+3]_13 chrXII:1018847-1019401 3.3e-05 66_[-3]_19 chrV:362146-362495 4e-05 79_[+3]_6 chrV:354700-355402 5.1e-05 21_[-3]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACCCATACAYCNY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCACCCATACAYCNY width=15 seqs=75 chrXV:639231-639422 ( 39) ACACCCGTACACCAC 1 chrX:690603-690803 ( 62) ACACCCGTACACCAC 1 chrXIII:5334-5775 ( 39) ACACCCACACACCAC 1 chrXII:5479-5926 ( 14) ACACCCACACACCAC 1 chrVIII:562282-562595 ( 76) ACACCCACACACCAC 1 chrVII:371246-371488 ( 38) GCACCCATGCACCTC 1 chrV:69116-69313 ( 14) GCACCCGTACCCCAC 1 chrV:6165-6609 ( 12) ACACCCACACACCAT 1 chrXVI:866482-866741 ( 25) ACACCCATACACCAA 1 chrII:181321-181643 ( 63) GCACCCATACATTAC 1 chrX:265375-265798 ( 76) GCACCCACACCTCGC 1 chrX:160040-160267 ( 71) ACACCCATACCCCAT 1 chrIV:538981-539217 ( 56) ACACCCACACCCCTC 1 chrIV:125316-125595 ( 71) GAACCCATACACCGC 1 chrVI:95482-95856 ( 15) GCACCCACACACCGG 1 chrVII:291669-291933 ( 45) GAACCCACACACCAC 1 chrV:85130-85452 ( 59) CCACCCATACCCCTC 1 chrXIII:145875-146284 ( 55) ACATCCATACACCAT 1 chrIII:163475-163878 ( 19) GCACCCACGCACCCA 1 chrXII:651022-651257 ( 51) ACACCCACACATTTC 1 chrX:703254-703630 ( 57) GCACCCATGCATCCA 1 chrVII:726417-726778 ( 40) ACACCCATACCCTAT 1 chrI:81916-82280 ( 60) ACATCCGTGCACCTC 1 chrXIII:302858-303113 ( 28) GCGCCCACACCCCAC 1 chrVII:856756-856964 ( 52) CCGCCCATACACCGC 1 chrIX:254231-254543 ( 19) GCACCCACACATTCT 1 chrXV:1025706-1026069 ( 39) ACACCCATTCATCAC 1 chrXV:968134-968447 ( 27) ACGCCCACGCACCCC 1 chrIV:411262-411661 ( 24) ACACCCACACCCCGG 1 chrXII:903391-903655 ( 49) GGACCCATGCACCAC 1 chrVIII:148929-149284 ( 24) TCACCCATGCACCAT 1 chrX:391840-392092 ( 78) ACACCCAGACCTCCC 1 chrVIII:505821-506198 ( 40) GCATCCATACATTTC 1 chrIV:358021-358454 ( 60) CCACCCATACATTAT 1 chrXV:216253-216677 ( 44) GCACCCGCGCCTTCC 1 chrII:415507-415892 ( 32) ACACCCATGCATTTT 1 chrXV:167987-168499 ( 14) CCGCCCACACATCAC 1 chrXII:1028200-1028576 ( 60) TCACCCATGCACCAA 1 chrX:607791-608160 ( 71) CCATCCATACATCCT 1 chrXVI:378664-379015 ( 24) GAACCCATACATTTC 1 chrXII:932085-932510 ( 18) ACATCCGTACATCCG 1 chrXI:382204-382467 ( 20) GCATCCGGACATCAC 1 chrVIII:175071-175387 ( 3) AGACCCATACATCAT 1 chrV:396169-396582 ( 54) ACATCCGTACACTTT 1 chrII:44991-45339 ( 55) GCATCCGTACATTCT 1 chrXV:161095-161396 ( 49) AAACCCATACATCGG 1 chrXV:79709-80125 ( 79) ACACCCGTACATATT 1 chrXI:67796-68046 ( 42) AAATCCGTGCACCGC 1 chrVII:1000363-1000583 ( 35) GCACCCAAACACCTG 1 chrXVI:731895-732306 ( 54) ACACCCATACCTTTA 1 chrXIII:224058-224389 ( 15) ACATCCATACATTTT 1 chrX:90059-90435 ( 64) TCACCCATACATGGC 1 chrXV:505048-505489 ( 76) AAACCCATACACAAT 1 chrXVI:699896-700701 ( 12) ACACCCAAGCACAGC 1 chrXV:901435-901654 ( 44) TCACCCGTACATTTT 1 chrIV:1278651-1279002 ( 2) GCATCCGTGCATGGC 1 chrXII:522154-522442 ( 55) ACATCCGTACACAAA 1 chrXV:978826-979124 ( 11) GAACCCATTCATCCT 1 chrII:165078-165415 ( 61) TAGCCCATACACCGC 1 chrXII:424211-424437 ( 34) ACACACGTACATTGC 1 chrVII:788310-788747 ( 49) ACATCCGTGCATACT 1 chrX:651210-651629 ( 52) ACACCCATATACCCA 1 chrVIII:296780-297272 ( 81) CCACCAGTACATCAC 1 chrXII:370573-370910 ( 2) GTATCCGCACACCGC 1 chrIV:1256870-1257278 ( 1) GAACCCGGGCCCCAT 1 chrXI:99755-99940 ( 53) GCACCCACGGCTCCT 1 chrXII:241585-242022 ( 54) ACATCCGTACATATA 1 chrVII:479183-482957 ( 43) GGATCCATACATGGC 1 chrIX:98208-100032 ( 47) GCATCCATTCATTCA 1 chrXIV:229610-230726 ( 11) CCACCCGTTCCTACC 1 chrXIV:63118-63587 ( 14) ACATCCGAACATTTT 1 chrXIV:241405-241750 ( 73) AAACCCATAGCCCAA 1 chrXII:1018847-1019401 ( 67) AAACCCAAACATTAA 1 chrV:362146-362495 ( 80) AAACCCATACAATAT 1 chrV:354700-355402 ( 22) CCATACATACACTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACCCATACAYCNY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 49020 bayes= 9.53037 E= 3.4e-075 65 -80 84 -224 -97 208 -221 -455 157 -1287 -148 -1287 -1287 201 -1287 -31 -356 239 -1287 -1287 -455 241 -1287 -1287 117 -1287 66 -1287 -256 37 -221 109 122 -1287 20 -256 -1287 237 -280 -455 135 11 -1287 -1287 -455 145 -1287 61 -175 169 -221 -24 30 11 11 -56 -110 137 -148 -4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACCCATACAYCNY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 75 E= 3.4e-075 0.493333 0.106667 0.333333 0.066667 0.160000 0.786667 0.040000 0.013333 0.933333 0.000000 0.066667 0.000000 0.000000 0.746667 0.000000 0.253333 0.026667 0.973333 0.000000 0.000000 0.013333 0.986667 0.000000 0.000000 0.706667 0.000000 0.293333 0.000000 0.053333 0.240000 0.040000 0.666667 0.733333 0.000000 0.213333 0.053333 0.000000 0.960000 0.026667 0.013333 0.800000 0.200000 0.000000 0.000000 0.013333 0.506667 0.000000 0.480000 0.093333 0.600000 0.040000 0.266667 0.386667 0.200000 0.200000 0.213333 0.146667 0.480000 0.066667 0.306667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACCCATACAYCNY MEME-3 regular expression -------------------------------------------------------------------------------- [AG]CA[CT]CC[AG][TC][AG]C[AC][CT][CT][ATCG][CT] -------------------------------------------------------------------------------- Time 858.78 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:2-1116 1.72e-01 100 chrI:71742-73668 2.31e-01 100 chrI:81916-82280 4.54e-04 59_[-3(3.99e-07)]_26 chrI:138882-139361 5.34e-01 100 chrI:141574-141935 6.94e-01 100 chrI:151544-151918 7.48e-02 100 chrI:166057-166556 4.33e-12 15_[+2(7.65e-09)]_14_[+1(5.06e-11)]_\ 27 chrI:180920-181466 1.08e-03 2_[+2(4.57e-07)]_79 chrI:182366-182781 2.24e-06 56_[-2(7.32e-10)]_25 chrI:229123-230194 1.26e-01 100 chrII:9372-9855 4.02e-06 24_[+2(1.38e-08)]_57 chrII:36173-36587 5.03e-04 72_[+2(4.57e-07)]_9 chrII:44991-45339 9.09e-03 54_[+3(2.18e-06)]_1_[-3(1.77e-05)]_\ 15 chrII:59807-61269 4.31e-01 100 chrII:87956-88590 9.89e-01 100 chrII:88963-90003 6.37e-01 100 chrII:159837-159998 3.94e-01 100 chrII:165078-165415 1.67e-02 60_[+3(8.28e-06)]_25 chrII:167570-168864 4.88e-01 100 chrII:181321-181643 7.04e-04 62_[+3(5.54e-08)]_23 chrII:197222-197865 1.93e-13 5_[+2(1.21e-09)]_15_[+1(1.49e-11)]_\ 36 chrII:226878-227383 1.80e-01 100 chrII:256209-257152 1.96e-01 100 chrII:266172-266673 2.42e-10 10_[+2(3.41e-08)]_14_[+1(8.10e-10)]_\ 32 chrII:326574-327178 1.27e-04 15_[-2(2.44e-06)]_66 chrII:332282-334268 6.64e-01 100 chrII:347416-347912 1.38e-01 100 chrII:350588-351127 1.11e-09 24_[+2(9.12e-06)]_13_[+1(1.96e-10)]_\ 19 chrII:405651-406222 1.14e-09 28_[+1(3.25e-11)]_25_[+2(8.53e-06)]_\ 3 chrII:415507-415892 1.54e-03 15_[-3(2.19e-05)]_1_[-3(1.16e-06)]_\ 54 chrII:444595-445041 8.92e-01 100 chrII:477039-477773 4.02e-02 81_[+2(3.17e-05)] chrII:478965-479529 8.20e-01 100 chrII:504523-504704 1.16e-01 100 chrII:544585-544806 9.21e-01 100 chrII:592374-593289 9.80e-01 100 chrII:604089-607121 9.88e-01 100 chrII:642868-643274 3.89e-03 33_[-2(2.91e-06)]_48 chrII:644986-645436 3.22e-08 42_[+1(5.84e-11)]_33 chrII:680414-682189 9.21e-01 100 chrII:812989-813183 9.02e-02 100 chrIII:2-1491 7.27e-02 100 chrIII:13998-16907 5.85e-01 100 chrIII:29602-31164 2.12e-01 100 chrIII:82191-82753 8.90e-07 49_[-1(5.84e-11)]_26 chrIII:113942-114805 4.40e-01 100 chrIII:123400-123816 1.35e-12 28_[-1(5.14e-15)]_47 chrIII:127534-127909 1.69e-04 49_[+2(2.88e-08)]_32 chrIII:142131-142976 9.84e-01 100 chrIII:162015-163149 4.98e-01 100 chrIII:163475-163878 3.51e-04 18_[-3(2.31e-07)]_15_[-3(1.53e-05)]_\ 37 chrIII:168101-168606 1.11e-09 7_[-1(1.96e-10)]_13_[-2(9.12e-06)]_\ 36 chrIII:177085-178795 9.21e-01 100 chrIII:227736-228209 3.47e-05 24_[+2(4.00e-09)]_57 chrIII:294923-295952 8.79e-01 100 chrIII:315616-316619 9.35e-02 100 chrIV:13-371 2.90e-01 100 chrIV:83304-83809 2.17e-03 46_[+2(1.85e-06)]_35 chrIV:116774-118212 7.75e-02 100 chrIV:118439-118831 9.94e-01 100 chrIV:125316-125595 8.88e-05 70_[-3(9.18e-08)]_15 chrIV:129927-130998 7.80e-02 100 chrIV:217014-218054 2.85e-01 100 chrIV:221163-222345 8.55e-02 100 chrIV:229416-230725 9.40e-01 100 chrIV:308003-310177 9.04e-01 100 chrIV:321424-321962 4.49e-01 100 chrIV:322161-323646 4.96e-01 100 chrIV:340190-341668 2.48e-01 100 chrIV:355133-356950 2.59e-01 100 chrIV:358021-358454 6.17e-03 59_[-3(9.28e-07)]_26 chrIV:359372-359877 2.60e-11 7_[+2(3.41e-08)]_37_[+1(1.02e-10)]_\ 12 chrIV:410176-410680 1.60e-11 5_[+2(2.02e-08)]_14_[+1(1.16e-10)]_\ 37 chrIV:411262-411661 6.14e-05 23_[+3(5.14e-07)]_13_[+3(3.26e-05)]_\ 34 chrIV:434039-434550 2.01e-10 29_[-1(8.10e-10)]_14_[-2(3.41e-08)]_\ 13 chrIV:437535-438134 1.80e-01 100 chrIV:449509-450032 9.99e-01 100 chrIV:488435-489153 8.56e-06 62_[-1(8.10e-10)]_13 chrIV:490518-491270 7.13e-01 100 chrIV:491493-492624 1.01e-01 100 chrIV:519560-519968 6.66e-06 33_[+2(1.38e-08)]_48 chrIV:520740-521244 1.11e-09 34_[+2(9.12e-06)]_13_[+1(1.96e-10)]_\ 9 chrIV:538981-539217 8.50e-05 55_[+3(6.47e-08)]_30 chrIV:541201-541903 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chrXI:326071-327550 3.68e-02 100 chrXI:379481-379921 3.22e-10 33_[+2(3.15e-07)]_15_[+1(3.62e-10)]_\ 8 chrXI:382204-382467 3.84e-05 19_[+3(1.97e-06)]_41_[+3(1.32e-05)]_\ 10 chrXI:430555-431669 6.91e-01 100 chrXI:458368-459014 9.86e-01 100 chrXI:490718-491365 4.52e-05 14_[+1(1.90e-08)]_61 chrXI:513208-513891 7.29e-01 100 chrXI:517779-518113 7.12e-01 100 chrXI:578761-579313 7.56e-07 38_[+1(1.02e-10)]_37 chrXI:617708-619302 6.93e-01 100 chrXI:665610-666808 5.04e-02 100 chrXII:5-260 5.66e-01 100 chrXII:5479-5926 2.76e-05 13_[+3(3.81e-09)]_15_[+3(3.05e-07)]_\ 2_[+3(2.65e-07)]_25 chrXII:11029-11984 4.65e-03 78_[-2(5.16e-06)]_3 chrXII:48542-49124 9.81e-01 100 chrXII:65444-65696 3.65e-01 100 chrXII:84137-84469 4.37e-01 100 chrXII:88150-88483 9.68e-01 100 chrXII:92291-92953 3.62e-08 43_[+1(3.77e-11)]_32 chrXII:97154-97859 8.64e-01 100 chrXII:167709-168282 2.24e-06 56_[-2(7.32e-10)]_25 chrXII:198695-199665 6.88e-02 100 chrXII:214637-215157 1.25e-07 45_[-1(5.06e-11)]_30 chrXII:232131-234216 1.83e-01 100 chrXII:241585-242022 6.83e-03 53_[+3(1.53e-05)]_6_[+3(9.72e-06)]_\ 11 chrXII:262813-263984 4.00e-01 100 chrXII:281955-283886 9.21e-01 100 chrXII:348225-348688 7.04e-01 100 chrXII:366025-366603 2.19e-02 17_[-1(3.26e-05)]_58 chrXII:368678-370223 4.98e-01 100 chrXII:370573-370910 2.88e-03 1_[+3(1.32e-05)]_84 chrXII:374203-374664 3.32e-05 9_[+1(1.90e-08)]_66 chrXII:424211-424437 3.83e-02 33_[+3(9.72e-06)]_52 chrXII:426900-427430 9.94e-07 21_[+2(8.53e-06)]_13_[+1(6.38e-08)]_\ 22 chrXII:448499-448983 1.28e-02 6_[-2(9.12e-06)]_75 chrXII:459641-459973 9.60e-01 100 chrXII:460129-460683 9.49e-01 100 chrXII:468764-468971 5.59e-03 42_[+2(1.41e-05)]_9_[+2(5.56e-06)]_\ 11 chrXII:489303-489560 5.59e-03 14_[+2(1.41e-05)]_9_[+2(5.56e-06)]_\ 39 chrXII:498343-499683 5.76e-01 100 chrXII:522154-522442 2.16e-02 54_[+3(6.49e-06)]_31 chrXII:568470-570828 9.94e-01 100 chrXII:592355-593123 8.04e-01 100 chrXII:605140-605631 5.99e-06 73_[-2(7.65e-09)]_8 chrXII:628085-628663 1.50e-03 63_[+2(4.57e-07)]_18 chrXII:651022-651257 9.17e-04 50_[+3(3.05e-07)]_35 chrXII:656701-657189 3.51e-07 48_[-1(1.16e-10)]_27 chrXII:673126-675295 9.27e-01 100 chrXII:687650-688151 3.22e-10 18_[-1(3.62e-10)]_15_[-2(3.15e-07)]_\ 23 chrXII:708118-711216 4.53e-01 100 chrXII:712237-713579 9.91e-01 100 chrXII:731898-732262 9.81e-06 64_[+2(6.19e-09)]_17 chrXII:734697-735266 8.72e-01 100 chrXII:780761-781878 4.69e-01 100 chrXII:784155-784571 3.34e-05 45_[+2(4.99e-09)]_36 chrXII:793711-797417 9.92e-01 100 chrXII:818255-820505 2.28e-01 100 chrXII:837654-839394 6.22e-01 100 chrXII:855798-857600 1.58e-01 100 chrXII:875214-875649 7.56e-07 55_[+1(1.02e-10)]_20 chrXII:897683-899633 8.15e-01 100 chrXII:903391-903655 2.42e-03 48_[+3(5.79e-07)]_37 chrXII:921726-922568 2.76e-01 100 chrXII:932085-932510 2.28e-03 17_[-3(1.97e-06)]_18_[-3(4.22e-06)]_\ 35 chrXII:962792-963346 5.52e-07 12_[-2(1.38e-08)]_69 chrXII:975782-976248 1.60e-09 27_[-1(8.40e-09)]_15_[-2(2.88e-08)]_\ 14 chrXII:1018847-1019401 9.74e-02 66_[-3(3.26e-05)]_19 chrXII:1028200-1028576 5.74e-03 59_[+3(1.44e-06)]_26 chrXII:1051911-1052371 3.45e-06 29_[-2(1.21e-09)]_52 chrXII:1064050-1065352 4.85e-01 100 chrXIII:20-188 5.92e-01 100 chrXIII:5334-5775 6.98e-05 38_[+3(3.81e-09)]_4_[+3(3.81e-09)]_\ 28 chrXIII:23729-25866 7.51e-01 100 chrXIII:91616-92103 5.48e-01 100 chrXIII:122911-124726 5.03e-02 64_[-1(3.37e-05)]_11 chrXIII:131557-132104 4.25e-07 54_[-1(3.25e-11)]_21 chrXIII:145875-146284 3.02e-04 54_[+3(1.99e-07)]_15_[+3(1.65e-05)]_\ 1 chrXIII:162922-164339 9.29e-01 100 chrXIII:168596-169054 7.50e-08 24_[+2(3.75e-06)]_30_[+1(4.94e-09)]_\ 2 chrXIII:183775-184192 2.15e-03 11_[-2(1.85e-06)]_70 chrXIII:195908-196392 4.57e-04 46_[-2(7.28e-07)]_35 chrXIII:224058-224389 1.42e-02 14_[-3(2.92e-06)]_10_[-3(1.90e-05)]_\ 46 chrXIII:225306-226843 3.57e-02 100 chrXIII:259012-259500 1.06e-05 9_[-2(7.32e-10)]_72 chrXIII:267667-268401 9.56e-01 100 chrXIII:290457-291160 1.53e-01 100 chrXIII:296763-298916 1.36e-02 21_[+3(9.49e-05)]_64 chrXIII:302858-303113 1.07e-03 27_[-3(4.52e-07)]_58 chrXIII:320946-321341 4.11e-08 63_[-1(1.16e-10)]_12 chrXIII:352088-352507 6.41e-04 37_[+2(4.57e-07)]_44 chrXIII:362843-363299 1.89e-01 100 chrXIII:372162-372723 1.93e-06 11_[-1(8.13e-05)]_26_[-1(3.62e-10)]_\ 13 chrXIII:379047-379618 2.30e-04 30_[-1(2.77e-08)]_45 chrXIII:420335-420866 1.69e-07 47_[-1(3.62e-10)]_28 chrXIII:463315-463871 9.94e-07 15_[+2(8.53e-06)]_13_[+1(6.38e-08)]_\ 28 chrXIII:480383-480886 2.85e-07 46_[-1(2.05e-11)]_29 chrXIII:504676-505234 1.74e-01 100 chrXIII:550618-553209 8.73e-01 100 chrXIII:572693-573162 4.29e-08 15_[-1(4.94e-09)]_14_[-2(2.44e-06)]_\ 27 chrXIII:586409-586913 3.22e-10 34_[-1(3.62e-10)]_15_[-2(3.15e-07)]_\ 7 chrXIII:631961-633916 1.16e-01 100 chrXIII:650678-652915 7.99e-01 100 chrXIII:731895-733593 8.78e-01 100 chrXIII:747741-748158 1.81e-09 2_[-1(3.25e-11)]_13_[-2(1.41e-05)]_\ 41 chrXIII:754416-754927 8.07e-01 100 chrXIII:761553-763131 3.94e-01 100 chrXIII:768017-768635 8.64e-01 100 chrXIII:807687-808548 9.21e-01 100 chrXIII:837704-838265 2.48e-05 47_[+1(4.94e-09)]_28 chrXIII:861211-861435 3.01e-01 100 chrXIII:872680-872919 2.55e-01 100 chrXIII:888440-889094 8.92e-01 100 chrXIII:923404-924381 1.62e-01 100 chrXIV:6484-7185 5.08e-01 100 chrXIV:61947-62970 5.16e-01 100 chrXIV:63118-63587 4.13e-02 13_[-3(2.51e-05)]_72 chrXIV:88916-90128 2.96e-02 29_[-2(8.76e-05)]_52 chrXIV:96041-96607 1.89e-02 14_[-2(6.93e-06)]_13_[+2(5.24e-05)]_\ 35 chrXIV:102507-103139 3.04e-01 100 chrXIV:104608-105253 3.95e-01 100 chrXIV:173889-174659 1.70e-01 100 chrXIV:229610-230726 5.65e-02 10_[+3(2.51e-05)]_75 chrXIV:241405-241750 4.83e-03 72_[+3(3.26e-05)]_13 chrXIV:330330-331123 2.50e-01 100 chrXIV:352301-352919 6.26e-01 100 chrXIV:374685-375112 1.32e-04 25_[+2(2.42e-07)]_56 chrXIV:392314-392716 9.35e-01 100 chrXIV:413604-416094 2.26e-01 100 chrXIV:442768-444806 3.36e-01 100 chrXIV:480993-481234 3.41e-01 100 chrXIV:493705-495638 2.24e-01 100 chrXIV:499289-500775 9.47e-01 100 chrXIV:546946-547419 3.62e-08 29_[+1(3.77e-11)]_46 chrXIV:560340-561170 4.09e-04 36_[-2(3.41e-08)]_45 chrXIV:567900-568554 3.66e-08 5_[+1(3.77e-11)]_70 chrXIV:569674-570141 4.72e-14 19_[-1(1.49e-11)]_15_[-2(1.21e-09)]_\ 22 chrXIV:575089-576144 1.98e-01 100 chrXIV:576667-577448 5.02e-01 100 chrXIV:585487-586536 5.45e-01 100 chrXIV:602091-602546 3.09e-06 48_[+2(1.21e-09)]_33 chrXIV:619459-620072 9.52e-01 100 chrXIV:631515-632142 7.04e-02 100 chrXIV:632414-632885 2.14e-09 4_[+2(2.88e-08)]_15_[+1(8.40e-09)]_\ 37 chrXIV:716020-716657 6.32e-01 100 chrXIV:725959-726410 4.02e-06 59_[-2(1.38e-08)]_22 chrXIV:783519-784323 2.54e-01 100 chrXV:2-1016 1.86e-01 100 chrXV:79709-80125 1.06e-02 56_[-3(2.86e-05)]_7_[-3(2.41e-06)]_\ 7 chrXV:92107-94817 2.57e-01 100 chrXV:109580-110039 1.88e-01 100 chrXV:110254-111252 8.94e-01 100 chrXV:113498-114165 2.42e-10 25_[+2(3.41e-08)]_14_[+1(8.10e-10)]_\ 17 chrXV:159296-160732 6.63e-02 100 chrXV:161095-161396 2.89e-03 48_[-3(2.41e-06)]_37 chrXV:167987-168499 5.29e-03 13_[+3(1.29e-06)]_72 chrXV:216253-216677 4.26e-03 43_[+3(1.16e-06)]_1_[+3(7.04e-06)]_\ 26 chrXV:226425-226914 4.42e-10 1_[-1(3.77e-11)]_12_[-2(1.85e-06)]_\ 43 chrXV:228118-228621 1.60e-09 16_[+2(2.88e-08)]_15_[+1(8.40e-09)]_\ 25 chrXV:253788-254350 4.35e-01 100 chrXV:274477-274995 1.72e-01 100 chrXV:281699-282462 2.99e-01 100 chrXV:287732-288411 2.36e-01 100 chrXV:300868-301438 3.36e-08 60_[+1(3.77e-11)]_15 chrXV:340090-340596 1.99e-09 15_[-1(1.90e-08)]_14_[-2(8.98e-08)]_\ 27 chrXV:353886-354327 3.33e-04 33_[-2(3.41e-08)]_48 chrXV:380680-380999 7.48e-01 100 chrXV:407668-408154 9.20e-01 100 chrXV:438414-439022 7.56e-07 35_[+1(1.02e-10)]_40 chrXV:444664-446182 1.70e-01 100 chrXV:464234-464700 8.50e-04 37_[+2(7.28e-07)]_44 chrXV:487248-487710 1.60e-09 14_[+2(2.88e-08)]_15_[+1(8.40e-09)]_\ 27 chrXV:505048-505489 3.69e-03 75_[+3(4.22e-06)]_10 chrXV:505754-506968 6.31e-01 100 chrXV:571717-572177 5.69e-03 65_[+2(8.53e-06)]_16 chrXV:594222-594640 1.80e-03 20_[-2(2.42e-07)]_61 chrXV:619756-624647 6.18e-01 100 chrXV:639231-639422 4.95e-06 38_[-3(2.67e-09)]_47 chrXV:663533-664109 4.02e-07 50_[-1(3.62e-10)]_25 chrXV:677925-679196 9.78e-01 100 chrXV:710012-710399 3.25e-03 50_[+2(8.53e-06)]_31 chrXV:779685-780956 9.73e-01 100 chrXV:797023-797240 2.18e-02 9_[+1(2.45e-05)]_66 chrXV:832346-832743 9.43e-01 100 chrXV:842377-842934 1.76e-01 100 chrXV:854006-854440 1.06e-12 23_[-1(5.06e-11)]_14_[-2(7.65e-09)]_\ 19 chrXV:866533-868114 6.66e-01 100 chrXV:877418-878015 8.83e-01 100 chrXV:901435-901654 5.48e-03 43_[-3(5.03e-06)]_42 chrXV:925206-925409 4.84e-02 100 chrXV:968134-968447 1.14e-03 26_[-3(5.14e-07)]_59 chrXV:976199-976764 4.41e-05 27_[+1(4.94e-09)]_48 chrXV:978826-979124 9.07e-03 10_[-3(8.28e-06)]_75 chrXV:980494-981129 2.83e-01 100 chrXV:1003943-1004972 9.18e-01 100 chrXV:1025706-1026069 2.09e-03 38_[+3(5.14e-07)]_47 chrXV:1027890-1029580 2.38e-01 100 chrXV:1091128-1091290 5.66e-01 100 chrXVI:55849-56507 3.06e-04 50_[-1(2.77e-08)]_25 chrXVI:75437-76735 9.15e-01 100 chrXVI:98616-99099 2.86e-01 100 chrXVI:135535-135839 9.98e-01 100 chrXVI:172843-174113 9.48e-01 100 chrXVI:188125-188943 3.88e-01 100 chrXVI:209782-210479 8.04e-01 100 chrXVI:280603-281917 1.54e-02 6_[+2(1.58e-05)]_75 chrXVI:302619-304270 7.19e-02 100 chrXVI:338727-339133 8.57e-03 15_[-2(8.53e-06)]_66 chrXVI:352278-352698 9.00e-01 100 chrXVI:377942-378447 2.38e-01 100 chrXVI:378664-379015 5.73e-04 23_[-3(1.60e-06)]_10_[-3(5.97e-06)]_\ 37 chrXVI:404543-405851 9.84e-01 100 chrXVI:406199-407780 7.03e-01 100 chrXVI:435497-436181 9.33e-01 100 chrXVI:520151-520737 6.91e-02 63_[-1(6.13e-05)]_12 chrXVI:560022-560504 3.19e-04 52_[-2(4.57e-07)]_29 chrXVI:572007-572575 1.27e-10 32_[+2(1.85e-06)]_12_[+1(3.77e-11)]_\ 12 chrXVI:581839-582313 1.37e-11 40_[+2(2.12e-07)]_14_[+1(2.05e-11)]_\ 2 chrXVI:622326-622837 1.84e-09 18_[-1(3.09e-09)]_33_[-2(4.57e-07)]_\ 5 chrXVI:653832-655018 6.93e-01 100 chrXVI:689348-689852 1.69e-05 19_[+2(4.00e-09)]_62 chrXVI:699896-700701 2.75e-02 11_[+3(5.03e-06)]_74 chrXVI:701869-702306 8.41e-01 100 chrXVI:718427-719510 9.84e-01 100 chrXVI:731895-732306 5.59e-03 53_[+3(2.92e-06)]_32 chrXVI:744047-744637 5.19e-05 28_[+1(6.38e-08)]_47 chrXVI:769011-769489 2.60e-11 16_[-1(1.02e-10)]_37_[-2(3.41e-08)]_\ 3 chrXVI:775642-776144 8.22e-01 100 chrXVI:794472-796074 8.79e-01 100 chrXVI:810467-810873 2.19e-04 60_[+2(2.88e-08)]_21 chrXVI:819197-819862 5.65e-06 54_[+2(1.21e-09)]_27 chrXVI:856751-857272 1.60e-01 100 chrXVI:860122-860661 3.35e-10 42_[+2(1.85e-06)]_12_[+1(3.77e-11)]_\ 2 chrXVI:866482-866741 3.59e-04 24_[-3(5.54e-08)]_61 chrXVI:880118-880584 6.21e-14 4_[-1(1.49e-11)]_15_[-2(1.21e-09)]_\ 37 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************