Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.021746 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.061166 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.08375 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.01822 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/background Finished invoke: name: bg status: 0 time: 0.014122 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 932.82664 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/seqs-shuffled Finished invoke: name: dreme status: 0 time: 45.362196 Invoking: centrimo -seqlen 523 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.154909 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.375556 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/background -primary SGGRRTCGAACCSVKGAYCTYCHGRTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.591654 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/background -primary BDTGGCYBAGTKGKTWAAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.752333 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/background -primary RRAAAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.44204 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/background -primary GMTACCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.228178 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.284622 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/background -primary CCGTGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.239999 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/background -primary CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.348456 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/background -primary ACTSTTAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.244905 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/background -primary CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.238302 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/background --motif SGGRRTCGAACCSVKGAYCTYCHGRTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa Finished invoke: name: fimo1 status: 0 time: 0.311699 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/background --motif BDTGGCYBAGTKGKTWAAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa Finished invoke: name: fimo2 status: 0 time: 0.309875 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/background --motif RRAAAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa Finished invoke: name: fimo3 status: 0 time: 0.165658 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/background --motif GMTACCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa Finished invoke: name: fimo4 status: 0 time: 0.194973 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa Finished invoke: name: fimo5 status: 0 time: 0.184457 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/background --motif CCGTGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa Finished invoke: name: fimo6 status: 0 time: 0.188846 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/background --motif CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa Finished invoke: name: fimo7 status: 0 time: 0.159615 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/background --motif ACTSTTAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa Finished invoke: name: fimo8 status: 0 time: 0.180337 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/background --motif CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/BY4741--AFT2.fa Finished invoke: name: fimo9 status: 0 time: 0.180775 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--AFT2/summary.tsv Finished invoke: name: summary status: 0 time: 0.16562 Done