Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.014313
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.057343
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.071401
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.012548
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background
Finished invoke:
  name: bg  status: 0  time: 0.012037
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 898.219261
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 37.932628
Invoking:
  centrimo -seqlen 442 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.150022
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.461807
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background -primary SSGGRATCGAACCSVBGAYCTYHNSRTTAM /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.47982
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background -primary ARTCWGRCGCCTTAMCCAMYTSGCCMAAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.437602
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background -primary RCACCCATACAYC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.37129
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background -primary AAAAADAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.37774
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background -primary KAGTGGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.259268
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background -primary ACCRACT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.251543
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background -primary CRCACGCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.235264
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background -primary AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.192256
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background -primary CGCGGGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.255645
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background --motif SSGGRATCGAACCSVBGAYCTYHNSRTTAM /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.281857
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background --motif ARTCWGRCGCCTTAMCCAMYTSGCCMAAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.278664
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background --motif RCACCCATACAYC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.257303
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background --motif AAAAADAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.1768
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background --motif KAGTGGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.175481
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background --motif ACCRACT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.170092
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background --motif CRCACGCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.172715
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background --motif AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.171452
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background --motif CGCGGGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/BY4741--ACE2.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.171493
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.149113
Done