******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:4-1233 1.0000 100 chrI:81862-82286 1.0000 100 chrI:138903-139366 1.0000 100 chrI:141641-141882 1.0000 100 chrI:142107-143670 1.0000 100 chrI:166053-166729 1.0000 100 chrI:180952-181476 1.0000 100 chrI:182347-182783 1.0000 100 chrI:229241-230193 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chrXV:663486-664257 1.0000 100 chrXV:673516-674109 1.0000 100 chrXV:677927-679213 1.0000 100 chrXV:709992-710724 1.0000 100 chrXV:779710-780924 1.0000 100 chrXV:797012-797242 1.0000 100 chrXV:853999-854452 1.0000 100 chrXV:866575-867185 1.0000 100 chrXV:901427-901688 1.0000 100 chrXV:925189-925423 1.0000 100 chrXV:968084-968427 1.0000 100 chrXV:976178-976689 1.0000 100 chrXV:978810-979159 1.0000 100 chrXV:980478-981455 1.0000 100 chrXV:1003748-1004953 1.0000 100 chrXV:1025702-1026077 1.0000 100 chrXV:1028443-1029405 1.0000 100 chrXV:1091136-1091291 1.0000 100 chrXVI:55546-56509 1.0000 100 chrXVI:76171-76728 1.0000 100 chrXVI:135480-135839 1.0000 100 chrXVI:172819-174084 1.0000 100 chrXVI:188309-188933 1.0000 100 chrXVI:209941-210508 1.0000 100 chrXVI:244057-244246 1.0000 100 chrXVI:279964-280219 1.0000 100 chrXVI:280644-282954 1.0000 100 chrXVI:302545-302973 1.0000 100 chrXVI:338645-339199 1.0000 100 chrXVI:378666-378997 1.0000 100 chrXVI:404587-405803 1.0000 100 chrXVI:406212-407354 1.0000 100 chrXVI:435609-436205 1.0000 100 chrXVI:520147-520529 1.0000 100 chrXVI:559864-560509 1.0000 100 chrXVI:571621-572862 1.0000 100 chrXVI:581596-582392 1.0000 100 chrXVI:622225-622824 1.0000 100 chrXVI:627249-627662 1.0000 100 chrXVI:653827-654717 1.0000 100 chrXVI:689292-689901 1.0000 100 chrXVI:699943-700673 1.0000 100 chrXVI:718488-719404 1.0000 100 chrXVI:731921-732324 1.0000 100 chrXVI:743886-744592 1.0000 100 chrXVI:768948-769478 1.0000 100 chrXVI:775626-776263 1.0000 100 chrXVI:776406-776725 1.0000 100 chrXVI:794428-794810 1.0000 100 chrXVI:810437-810886 1.0000 100 chrXVI:819274-820023 1.0000 100 chrXVI:856757-857176 1.0000 100 chrXVI:859845-860596 1.0000 100 chrXVI:866471-866974 1.0000 100 chrXVI:879968-880553 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 574 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 57400 N= 574 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.305 C 0.195 G 0.195 T 0.305 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/BY4741--ACE2/background): A 0.317 C 0.183 G 0.183 T 0.317 ******************************************************************************** ******************************************************************************** MOTIF SSGGRATCGAACCSVBGAYCTYHNSRTTAM MEME-1 width = 30 sites = 96 llr = 1848 E-value = 4.9e-396 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSGGRATCGAACCSVBGAYCTYHNSRTTAM MEME-1 Description -------------------------------------------------------------------------------- Simplified A :22:64:::aa::13116::1133141:53 pos.-specific C 54:::2:8:::a8433:2463643322224 probability G 347a42::a::::45491131:12631121 matrix T 2::::2a2::::21:3:2416322::6611 bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 * * **** * Relative 1.5 * ****** * Entropy 1.2 ** ******* * (27.8 bits) 1.0 *** ******* * * * 0.7 ***** ******* * * * * * 0.5 ***** *********** **** **** 0.2 ***** ***************** ****** 0.0 ------------------------------ Multilevel CGGGAATCGAACCCGGGACCTCCAGATTAC consensus GCA G T GAT TGCTACCG CGA sequence T CC TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGRATCGAACCSVBGAYCTYHNSRTTAM MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrIII:123412-123817 + 22 2.29e-14 TGGGGCGAGC CGGGACTCGAACCCGGGACCTCCCGCACCC TAAGCGAGAA chrIV:802449-803023 + 54 9.46e-13 GAGGTCCTAC CCGGATTCGAACCGGGGTTGTCCGGATCAA AACCGAAAGT chrIV:644906-645380 + 69 9.46e-13 AAGGTCCTAC CCGGATTCGAACCGGGGTTGTCCGGATCAA AA chrIII:168099-168549 + 36 9.46e-13 AAGGTCCTAC CCGGATTCGAACCGGGGTTGTCCGGATCAA AACCGAAAGT chrII:350551-351263 - 3 9.46e-13 AAGGTCTTAC CCGGATTCGAACCGGGGTTGTCCGGATCAA AA chrXV:853999-854452 + 21 1.35e-12 TTGGACGCAA CCGGAATCGAACCGATGACCTCTTCCTTGC AAGGGAAGCG chrXIV:602081-602583 - 65 1.35e-12 TCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTAT TAGCACGGTG chrXIV:569694-570153 + 3 1.35e-12 TA GCGGGATCGAACCGCTGATCCCCGCGTTAT TAGCACGGTG chrXII:1051796-1052343 + 61 1.35e-12 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTAT TAGCACGGTG chrXII:214644-215172 + 34 1.35e-12 ATGGACGCAA CCGGAATCGAACCGATGACCTCTTCCTTGC AAGGGAAGCG chrVII:738827-739490 - 49 1.35e-12 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTAT TAGCACGGTG chrV:551032-551604 + 26 1.35e-12 TTGGTCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTAT TAGCACGGTG chrV:442901-443487 + 67 1.35e-12 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTAT TAGC chrV:311762-312293 + 55 1.35e-12 TTGGACGCAA CCGGAATCGAACCGATGACCTCTTCCTTGC AAGGGAAGCG chrIV:667779-668254 + 50 1.35e-12 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTAT TAGCACGGTG chrII:197190-197874 - 47 1.35e-12 ATGGTCTCTA GCGGGATCGAACCGCTGATCCCCGCGTTAT TAGCACGGTG chrXI:46476-47024 + 44 5.16e-12 ATGCCCTCTG TGGGAATTGAACCCACGATCCCCGCATTAC GAGTGCGATG chrX:531578-532218 - 12 6.05e-12 CTGCGCAAGC CCGGAATCGAACCGGGGGCCCAACGATGGC AACGTTGGAT chrVII:930708-931244 + 36 6.05e-12 ATGCGCAAGC CCGGAATCGAACCGGGGGCCCAACGATGGC AACGTTGGAT chrVII:845436-845921 - 53 6.05e-12 TTGCGCAAGC CCGGAATCGAACCGGGGGCCCAACGATGGC AACGTTGGAT chrV:130854-131396 + 16 6.05e-12 TAGGTCTTAC CCGGATTCGAACCGGGGTTGTTCGGATCAA AACCGAAAGT chrXVI:856757-857176 - 20 1.51e-11 ATGGACGAGT CCGGAATCGAACCGGAGACCTCTCCCATGC TAAGGGAGCG chrXIII:320957-321339 + 58 1.51e-11 ATGGACGAGT CCGGAATCGAACCGGAGACCTCTCCCATGC TAAGGGAGCG chrXII:656672-657187 + 64 1.51e-11 TTGGACGAGT CCGGAATCGAACCGGAGACCTCTCCCATGC TAAGGGA chrVII:774096-774646 - 62 1.51e-11 TGGACGAGT CCGGAATCGAACCGGAGACCTCTCCCATGC TAAGGGAGCG chrIV:410218-410702 - 3 1.51e-11 TTGGACGAGT CCGGAATCGAACCGGAGACCTCTCCCATGC TA chrXVI:209941-210508 + 27 2.68e-11 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCACGGTGAA AGCGTGATGT chrVII:541599-542232 - 18 2.68e-11 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCACGGTGAA AGCGTGATGT chrVII:401321-401776 + 38 2.68e-11 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCACGGTGAA AGCGTGATGT chrII:644984-645463 - 27 2.68e-11 ACTCCGATAC GGGGAGTCGAACCCCGGTCTCCACGGTGAA AGCGTGATGT chrXV:353774-354314 + 56 4.66e-11 ATGCTTCCAA TCGGATTTGAACCGATGATCTCCACATTAC TAGTGTGGCG chrXIV:104590-105124 - 32 4.66e-11 ATGCTTCCAA TCGGATTTGAACCGATGATCTCCACATTAC TAGTGTGGCG chrIX:325445-326112 - 54 4.66e-11 TTGCTTCCAA TCGGATTTGAACCGATGATCTCCACATTAC TAGTGTGGCG chrIII:294634-296377 - 63 4.66e-11 GCTTCCAA TCGGATTTGAACCGATGATCTCCACATTAC TAGTGTGGCG chrII:266185-266715 - 12 4.66e-11 ATGCTTCCAA TCGGATTTGAACCGATGATCTCCACATTAC TAGTGTGGCG chrXIII:480359-480895 + 53 7.91e-11 AAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTAA GAGTCATACG chrX:414789-415288 - 12 7.91e-11 TAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTAA GAGTCATACG chrVI:226503-226914 + 39 7.91e-11 AAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTAA GAGTCATACG chrV:135197-135704 + 34 7.91e-11 AAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTAA GAGTCATACG chrIX:299974-300542 + 29 7.91e-11 TAGCCCTGTA GGGGGCTCGAACCCCTAACCTTATGATTAA GAGTCATACG chrXIII:807979-808540 + 46 1.49e-10 AAGGTCCCAC CCGGATTCGAACTGGGGTTGTTCGGATCAG AACCGAAAGT chrXIV:546951-547373 - 46 3.43e-10 CGGGGCGAGC TGGGAATTGAACCCAGGGCCTCTCGCATGC TTTGTCTTCC chrXIII:195753-196410 + 46 3.43e-10 AGGGGCGAGC TGGGAATTGAACCCAGGGCCTCTCGCATGC TTTGTCTTCC chrVIII:388669-389227 + 4 3.43e-10 AGC TGGGAATTGAACCCAGGGCCTCTCGCATGC TTTGTCTTCC chrVII:779372-779906 - 60 4.32e-10 TTGAGCGGTA CGAGAATCGAACCCGTGTCCCCACCTTGGA AGGGTGGGAT chrXIII:131507-132168 + 47 4.83e-10 GCACTCACGA TGGGGGTCGAACCCATAATCTTCTGATTAG AAGTCAGACG chrX:355119-355748 - 24 4.83e-10 GCACTCACGA TGGGGGTCGAACCCATAATCTTCTGATTAG AAGTCAGACG chrVII:828470-829003 + 46 4.83e-10 GCACTCACGA TGGGGGTCGAACCCATAATCTTCTGATTAG AAGTCAGACG chrIV:568576-569261 - 47 4.83e-10 GCACTCACGA TGGGGGTCGAACCCATAATCTTCTGATTAG AAGTCAGACG chrIV:1256844-1257285 + 3 6.03e-10 GC CGGGAATCGAACCCGGGCCCCATGCTTGGG AAGCATGAAT chrXIII:586399-586897 + 47 8.35e-10 ATGATTTCGC CCAGGATCGAACTGGGGACGTTCTGCGTGT TAAGCAGATG chrXIII:420302-420919 + 37 8.35e-10 ATGATTTCGC CCAGGATCGAACTGGGGACGTTCTGCGTGT TAAGCAGATG chrXIII:378866-379829 + 15 8.35e-10 TTGAAACGGA CAGGAATTGAACCTGCAACCCTTCGATTGC AATCTTATTC chrXIII:372203-372759 + 23 8.35e-10 ATGATTTCGC CCAGGATCGAACTGGGGACGTTCTGCGTGT TAAGCAGATG chrV:469252-469729 - 52 8.35e-10 ATGATTTCGC CCAGGATCGAACTGGGGACGTTCTGCGTGT TAAGCAGATG chrXIV:374718-375114 - 55 1.27e-09 TTGCGAACTC TGTGGATCGAACACAGGACCTCCAGATGAC TTGACCGAAG chrVIII:466730-467340 - 38 1.56e-09 ATGCCACCTG CCAGAATTGAACTAGCGACCTTTGCATTAC AAGTGCAACG chrIV:1305438-1305886 - 62 3.10e-09 CGACAACTG CAGGACTCGAACCTGCGCGGGCCAAAGCCC AAAAGATTTC chrV:492197-492566 + 30 3.41e-09 CCTTCCCCGC CAGGACTTGAACCTGGAATCTTCTGGTTCG TAGCCAGACG chrIV:619680-620256 + 60 3.41e-09 TCTTCCCCGC CAGGACTTGAACCTGGAATCTTCTGGTTCG TAGCCAGACG chrVI:210415-210933 + 4 4.11e-09 GGG GGCGAGTCGAACGCCCGATCTCAAGATTTC GTAGTGGTAA chrVI:167265-167707 - 51 4.11e-09 ATCTCCCGGG GGCGAGTCGAACGCCCGATCTCAAGATTTC GTAGTGGTAA chrIV:946135-946641 - 24 4.11e-09 ATCTCCCGGG GGCGAGTCGAACGCCCGATCTCAAGATTTC GTAGTGATAA chrXV:594096-594646 + 42 4.51e-09 ATGCGCAAGC CGGGAATCGAACCCGGGCCTCATGCTTGGG AAGCATAAAT chrXII:167685-168248 + 37 5.40e-09 ACGACAACTG CAGGACTCGAACCTGCGCGGGCAAAGCCCA AAAGATTTCT chrX:523785-524293 + 32 5.40e-09 ACGACAACTG CAGGACTCGAACCTGCGCGGGCAAAGCCCA AAAGATTTCT chrVIII:132737-133367 + 33 5.40e-09 TCGACAACTG CAGGACTCGAACCTGCGCGGGCAAAGCCCA AAAGATTTCT chrIV:980738-981267 + 31 5.40e-09 ACGACAACTG CAGGACTCGAACCTGCGCGGGCAAAGCCCA AAAGATTTCT chrIV:437477-438151 - 51 5.40e-09 ACGACAACTG CAGGACTCGAACCTGCGCGGGCAAAGCCCA AAAGATTTCT chrII:226848-227400 - 44 5.40e-09 ACGACAACTG CAGGACTCGAACCTGCGCGGGCAAAGCCCA AAAGATTTCT chrI:182347-182783 + 16 5.40e-09 ACGACAACTG CAGGACTCGAACCTGCGCGGGCAAAGCCCA AAAGATTTCT chrXVI:768948-769478 + 53 5.91e-09 ACTCCTCATA GGGGGCTCGAACCCCTGACATTTCGGTATC CTTGCTTAAG chrXVI:559864-560509 + 71 5.91e-09 ATGCGAATTC TGTGGATCGAACACAGGACCTCCAGATAAC chrXV:438434-438983 - 42 5.91e-09 ACTCCTCATA GGGGGCTCGAACCCCTGACATTTCGGTATC CTTGCTTAAG chrX:422707-423278 - 29 7.70e-09 GTGCTCCAGG GGAGGTTCGAACTCTCGACCTTCAGATTAT GAGACTGACG chrXV:487204-487702 - 71 9.15e-09 . TGAGGGTTGAACTCACGATCTTGCGATTAA CAGTCGCACG chrXIV:632400-632925 - 22 9.15e-09 ACGACCCCAG TGAGGGTTGAACTCACGATCTTGCGATTAA CAGTCGCACG chrXII:975785-976272 + 14 9.15e-09 ACGACCCCAG TGAGGGTTGAACTCACGATCTTGCGATTAA CAGTCGCACG chrXI:74437-74927 - 27 9.15e-09 GCGACCCCAG TGAGGGTTGAACTCACGATCTTGCGATTAA CAGTCGCACG chrVII:730956-731437 - 26 9.15e-09 ACGACCCCAG TGAGGGTTGAACTCACGATCTTGCGATTAA CAGTCGCACG chrXIV:725913-726423 + 25 1.39e-08 CTGAAGGATG CGAGGTTCGAACTCGCGCGGACAACCGTCC AACAGATCTT chrII:347407-347933 - 28 1.39e-08 CTGAAGGATG CGAGGTTCGAACTCGCGCGGACAACCGTCC AACAGATCTT chrII:9372-9871 - 57 1.39e-08 CTGAAGGATG CGAGGTTCGAACTCGCGCGGACAACCGTCC AACAGATCTT chrIV:1095033-1095751 + 37 2.42e-08 ATGCGAACTC TGTGGATCGAACACAGGACCTCCAGATATC TTGACCAAAG chrXIII:362880-363322 - 46 3.52e-08 ATGCCATCTC CTAGAATCGAACCAGGGTTTCATCGGCCAC AACGATGTGT chrXI:313099-313783 + 19 3.52e-08 ATGCCATCTC CTAGAATCGAACCAGGGTTTCATCGGCCAC AACGATGTGT chrVII:110395-110941 + 16 3.52e-08 TTGCCATCTC CTAGAATCGAACCAGGGTTTCATCGGCCAC AACGATGTGT chrV:434369-434766 + 33 3.52e-08 ATGCCATCTC CTAGAATCGAACCAGGGTTTCATCGGCCAC AACGATGTGT chrXVI:689292-689901 - 62 3.79e-08 CGACACCAG CAGGATTTGAACCAGCGCGGGCAGAGCCCA ACAGATTTCA chrIII:227754-228216 - 69 3.79e-08 AG CAGGATTTGAACCAGCGCGGGCAGAGCCCA AGAGATAGCC chrX:374172-374765 + 15 4.37e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCACGCGAC AAGCGCCCAT chrIX:336049-336696 + 36 4.37e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTGGCACGCGAC AAGCGCCCAT chrXVI:435609-436205 + 45 7.10e-08 AAGCTCGCAC TCAGGATCGAACTAAGGACCAACAGATTTG CAATCTGCTG chrVII:706940-707355 + 20 7.10e-08 AAGCTCGCAC TCAGGATCGAACTAAGGACCAACAGATTTG CAATCTGCTG chrXV:274484-275030 - 28 1.19e-07 GCGTCACAGA CAGGATTCGAACCTGCGCAGGTAAAACCCA ATGCCTAATT chrVI:191280-191859 + 3 1.19e-07 GA CAGGATTCGAACCTGCGCAGGTAAAACCCA ATGCCTAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGRATCGAACCSVBGAYCTYHNSRTTAM MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123412-123817 2.3e-14 21_[+1]_49 chrIV:802449-803023 9.5e-13 53_[+1]_17 chrIV:644906-645380 9.5e-13 68_[+1]_2 chrIII:168099-168549 9.5e-13 35_[+1]_35 chrII:350551-351263 9.5e-13 2_[-1]_68 chrXV:853999-854452 1.4e-12 20_[+1]_50 chrXIV:602081-602583 1.4e-12 64_[-1]_6 chrXIV:569694-570153 1.4e-12 2_[+1]_68 chrXII:1051796-1052343 1.4e-12 60_[+1]_10 chrXII:214644-215172 1.4e-12 33_[+1]_37 chrVII:738827-739490 1.4e-12 48_[-1]_22 chrV:551032-551604 1.4e-12 25_[+1]_45 chrV:442901-443487 1.4e-12 66_[+1]_4 chrV:311762-312293 1.4e-12 54_[+1]_16 chrIV:667779-668254 1.4e-12 49_[+1]_21 chrII:197190-197874 1.4e-12 46_[-1]_24 chrXI:46476-47024 5.2e-12 43_[+1]_27 chrX:531578-532218 6e-12 11_[-1]_59 chrVII:930708-931244 6e-12 35_[+1]_35 chrVII:845436-845921 6e-12 52_[-1]_18 chrV:130854-131396 6e-12 15_[+1]_55 chrXVI:856757-857176 1.5e-11 19_[-1]_51 chrXIII:320957-321339 1.5e-11 57_[+1]_13 chrXII:656672-657187 1.5e-11 63_[+1]_7 chrVII:774096-774646 1.5e-11 61_[-1]_9 chrIV:410218-410702 1.5e-11 2_[-1]_68 chrXVI:209941-210508 2.7e-11 26_[+1]_44 chrVII:541599-542232 2.7e-11 17_[-1]_53 chrVII:401321-401776 2.7e-11 37_[+1]_33 chrII:644984-645463 2.7e-11 26_[-1]_44 chrXV:353774-354314 4.7e-11 55_[+1]_15 chrXIV:104590-105124 4.7e-11 31_[-1]_39 chrIX:325445-326112 4.7e-11 53_[-1]_17 chrIII:294634-296377 4.7e-11 62_[-1]_8 chrII:266185-266715 4.7e-11 11_[-1]_59 chrXIII:480359-480895 7.9e-11 52_[+1]_18 chrX:414789-415288 7.9e-11 11_[-1]_59 chrVI:226503-226914 7.9e-11 38_[+1]_32 chrV:135197-135704 7.9e-11 33_[+1]_37 chrIX:299974-300542 7.9e-11 28_[+1]_42 chrXIII:807979-808540 1.5e-10 45_[+1]_25 chrXIV:546951-547373 3.4e-10 45_[-1]_25 chrXIII:195753-196410 3.4e-10 45_[+1]_25 chrVIII:388669-389227 3.4e-10 3_[+1]_67 chrVII:779372-779906 4.3e-10 59_[-1]_11 chrXIII:131507-132168 4.8e-10 46_[+1]_24 chrX:355119-355748 4.8e-10 23_[-1]_47 chrVII:828470-829003 4.8e-10 45_[+1]_25 chrIV:568576-569261 4.8e-10 46_[-1]_24 chrIV:1256844-1257285 6e-10 2_[+1]_68 chrXIII:586399-586897 8.4e-10 46_[+1]_24 chrXIII:420302-420919 8.4e-10 36_[+1]_34 chrXIII:378866-379829 8.4e-10 14_[+1]_56 chrXIII:372203-372759 8.4e-10 22_[+1]_48 chrV:469252-469729 8.4e-10 51_[-1]_19 chrXIV:374718-375114 1.3e-09 54_[-1]_16 chrVIII:466730-467340 1.6e-09 37_[-1]_33 chrIV:1305438-1305886 3.1e-09 61_[-1]_9 chrV:492197-492566 3.4e-09 29_[+1]_41 chrIV:619680-620256 3.4e-09 59_[+1]_11 chrVI:210415-210933 4.1e-09 3_[+1]_67 chrVI:167265-167707 4.1e-09 50_[-1]_20 chrIV:946135-946641 4.1e-09 23_[-1]_47 chrXV:594096-594646 4.5e-09 41_[+1]_29 chrXII:167685-168248 5.4e-09 36_[+1]_34 chrX:523785-524293 5.4e-09 31_[+1]_39 chrVIII:132737-133367 5.4e-09 32_[+1]_38 chrIV:980738-981267 5.4e-09 30_[+1]_40 chrIV:437477-438151 5.4e-09 50_[-1]_20 chrII:226848-227400 5.4e-09 43_[-1]_27 chrI:182347-182783 5.4e-09 15_[+1]_55 chrXVI:768948-769478 5.9e-09 52_[+1]_18 chrXVI:559864-560509 5.9e-09 70_[+1] chrXV:438434-438983 5.9e-09 41_[-1]_29 chrX:422707-423278 7.7e-09 28_[-1]_42 chrXV:487204-487702 9.1e-09 70_[-1] chrXIV:632400-632925 9.1e-09 21_[-1]_49 chrXII:975785-976272 9.1e-09 13_[+1]_57 chrXI:74437-74927 9.1e-09 26_[-1]_44 chrVII:730956-731437 9.1e-09 25_[-1]_45 chrXIV:725913-726423 1.4e-08 24_[+1]_46 chrII:347407-347933 1.4e-08 27_[-1]_43 chrII:9372-9871 1.4e-08 56_[-1]_14 chrIV:1095033-1095751 2.4e-08 36_[+1]_34 chrXIII:362880-363322 3.5e-08 45_[-1]_25 chrXI:313099-313783 3.5e-08 18_[+1]_52 chrVII:110395-110941 3.5e-08 15_[+1]_55 chrV:434369-434766 3.5e-08 32_[+1]_38 chrXVI:689292-689901 3.8e-08 61_[-1]_9 chrIII:227754-228216 3.8e-08 68_[-1]_2 chrX:374172-374765 4.4e-08 14_[+1]_56 chrIX:336049-336696 4.4e-08 35_[+1]_35 chrXVI:435609-436205 7.1e-08 44_[+1]_26 chrVII:706940-707355 7.1e-08 19_[+1]_51 chrXV:274484-275030 1.2e-07 27_[-1]_43 chrVI:191280-191859 1.2e-07 2_[+1]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGRATCGAACCSVBGAYCTYHNSRTTAM MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSGGRATCGAACCSVBGAYCTYHNSRTTAM width=30 seqs=96 chrIII:123412-123817 ( 22) CGGGACTCGAACCCGGGACCTCCCGCACCC 1 chrIV:802449-803023 ( 54) CCGGATTCGAACCGGGGTTGTCCGGATCAA 1 chrIV:644906-645380 ( 69) CCGGATTCGAACCGGGGTTGTCCGGATCAA 1 chrIII:168099-168549 ( 36) CCGGATTCGAACCGGGGTTGTCCGGATCAA 1 chrII:350551-351263 ( 3) CCGGATTCGAACCGGGGTTGTCCGGATCAA 1 chrXV:853999-854452 ( 21) CCGGAATCGAACCGATGACCTCTTCCTTGC 1 chrXIV:602081-602583 ( 65) GCGGGATCGAACCGCTGATCCCCGCGTTAT 1 chrXIV:569694-570153 ( 3) GCGGGATCGAACCGCTGATCCCCGCGTTAT 1 chrXII:1051796-1052343 ( 61) GCGGGATCGAACCGCTGATCCCCGCGTTAT 1 chrXII:214644-215172 ( 34) CCGGAATCGAACCGATGACCTCTTCCTTGC 1 chrVII:738827-739490 ( 49) GCGGGATCGAACCGCTGATCCCCGCGTTAT 1 chrV:551032-551604 ( 26) GCGGGATCGAACCGCTGATCCCCGCGTTAT 1 chrV:442901-443487 ( 67) GCGGGATCGAACCGCTGATCCCCGCGTTAT 1 chrV:311762-312293 ( 55) CCGGAATCGAACCGATGACCTCTTCCTTGC 1 chrIV:667779-668254 ( 50) GCGGGATCGAACCGCTGATCCCCGCGTTAT 1 chrII:197190-197874 ( 47) GCGGGATCGAACCGCTGATCCCCGCGTTAT 1 chrXI:46476-47024 ( 44) TGGGAATTGAACCCACGATCCCCGCATTAC 1 chrX:531578-532218 ( 12) CCGGAATCGAACCGGGGGCCCAACGATGGC 1 chrVII:930708-931244 ( 36) CCGGAATCGAACCGGGGGCCCAACGATGGC 1 chrVII:845436-845921 ( 53) CCGGAATCGAACCGGGGGCCCAACGATGGC 1 chrV:130854-131396 ( 16) CCGGATTCGAACCGGGGTTGTTCGGATCAA 1 chrXVI:856757-857176 ( 20) CCGGAATCGAACCGGAGACCTCTCCCATGC 1 chrXIII:320957-321339 ( 58) CCGGAATCGAACCGGAGACCTCTCCCATGC 1 chrXII:656672-657187 ( 64) CCGGAATCGAACCGGAGACCTCTCCCATGC 1 chrVII:774096-774646 ( 62) CCGGAATCGAACCGGAGACCTCTCCCATGC 1 chrIV:410218-410702 ( 3) CCGGAATCGAACCGGAGACCTCTCCCATGC 1 chrXVI:209941-210508 ( 27) GGGGAGTCGAACCCCGGTCTCCACGGTGAA 1 chrVII:541599-542232 ( 18) GGGGAGTCGAACCCCGGTCTCCACGGTGAA 1 chrVII:401321-401776 ( 38) GGGGAGTCGAACCCCGGTCTCCACGGTGAA 1 chrII:644984-645463 ( 27) GGGGAGTCGAACCCCGGTCTCCACGGTGAA 1 chrXV:353774-354314 ( 56) TCGGATTTGAACCGATGATCTCCACATTAC 1 chrXIV:104590-105124 ( 32) TCGGATTTGAACCGATGATCTCCACATTAC 1 chrIX:325445-326112 ( 54) TCGGATTTGAACCGATGATCTCCACATTAC 1 chrIII:294634-296377 ( 63) TCGGATTTGAACCGATGATCTCCACATTAC 1 chrII:266185-266715 ( 12) TCGGATTTGAACCGATGATCTCCACATTAC 1 chrXIII:480359-480895 ( 53) GGGGGCTCGAACCCCTAACCTTATGATTAA 1 chrX:414789-415288 ( 12) GGGGGCTCGAACCCCTAACCTTATGATTAA 1 chrVI:226503-226914 ( 39) GGGGGCTCGAACCCCTAACCTTATGATTAA 1 chrV:135197-135704 ( 34) GGGGGCTCGAACCCCTAACCTTATGATTAA 1 chrIX:299974-300542 ( 29) GGGGGCTCGAACCCCTAACCTTATGATTAA 1 chrXIII:807979-808540 ( 46) CCGGATTCGAACTGGGGTTGTTCGGATCAG 1 chrXIV:546951-547373 ( 46) TGGGAATTGAACCCAGGGCCTCTCGCATGC 1 chrXIII:195753-196410 ( 46) TGGGAATTGAACCCAGGGCCTCTCGCATGC 1 chrVIII:388669-389227 ( 4) TGGGAATTGAACCCAGGGCCTCTCGCATGC 1 chrVII:779372-779906 ( 60) CGAGAATCGAACCCGTGTCCCCACCTTGGA 1 chrXIII:131507-132168 ( 47) TGGGGGTCGAACCCATAATCTTCTGATTAG 1 chrX:355119-355748 ( 24) TGGGGGTCGAACCCATAATCTTCTGATTAG 1 chrVII:828470-829003 ( 46) TGGGGGTCGAACCCATAATCTTCTGATTAG 1 chrIV:568576-569261 ( 47) TGGGGGTCGAACCCATAATCTTCTGATTAG 1 chrIV:1256844-1257285 ( 3) CGGGAATCGAACCCGGGCCCCATGCTTGGG 1 chrXIII:586399-586897 ( 47) CCAGGATCGAACTGGGGACGTTCTGCGTGT 1 chrXIII:420302-420919 ( 37) CCAGGATCGAACTGGGGACGTTCTGCGTGT 1 chrXIII:378866-379829 ( 15) CAGGAATTGAACCTGCAACCCTTCGATTGC 1 chrXIII:372203-372759 ( 23) CCAGGATCGAACTGGGGACGTTCTGCGTGT 1 chrV:469252-469729 ( 52) CCAGGATCGAACTGGGGACGTTCTGCGTGT 1 chrXIV:374718-375114 ( 55) TGTGGATCGAACACAGGACCTCCAGATGAC 1 chrVIII:466730-467340 ( 38) CCAGAATTGAACTAGCGACCTTTGCATTAC 1 chrIV:1305438-1305886 ( 62) CAGGACTCGAACCTGCGCGGGCCAAAGCCC 1 chrV:492197-492566 ( 30) CAGGACTTGAACCTGGAATCTTCTGGTTCG 1 chrIV:619680-620256 ( 60) CAGGACTTGAACCTGGAATCTTCTGGTTCG 1 chrVI:210415-210933 ( 4) GGCGAGTCGAACGCCCGATCTCAAGATTTC 1 chrVI:167265-167707 ( 51) GGCGAGTCGAACGCCCGATCTCAAGATTTC 1 chrIV:946135-946641 ( 24) GGCGAGTCGAACGCCCGATCTCAAGATTTC 1 chrXV:594096-594646 ( 42) CGGGAATCGAACCCGGGCCTCATGCTTGGG 1 chrXII:167685-168248 ( 37) CAGGACTCGAACCTGCGCGGGCAAAGCCCA 1 chrX:523785-524293 ( 32) CAGGACTCGAACCTGCGCGGGCAAAGCCCA 1 chrVIII:132737-133367 ( 33) CAGGACTCGAACCTGCGCGGGCAAAGCCCA 1 chrIV:980738-981267 ( 31) CAGGACTCGAACCTGCGCGGGCAAAGCCCA 1 chrIV:437477-438151 ( 51) CAGGACTCGAACCTGCGCGGGCAAAGCCCA 1 chrII:226848-227400 ( 44) CAGGACTCGAACCTGCGCGGGCAAAGCCCA 1 chrI:182347-182783 ( 16) CAGGACTCGAACCTGCGCGGGCAAAGCCCA 1 chrXVI:768948-769478 ( 53) GGGGGCTCGAACCCCTGACATTTCGGTATC 1 chrXVI:559864-560509 ( 71) TGTGGATCGAACACAGGACCTCCAGATAAC 1 chrXV:438434-438983 ( 42) GGGGGCTCGAACCCCTGACATTTCGGTATC 1 chrX:422707-423278 ( 29) GGAGGTTCGAACTCTCGACCTTCAGATTAT 1 chrXV:487204-487702 ( 71) TGAGGGTTGAACTCACGATCTTGCGATTAA 1 chrXIV:632400-632925 ( 22) TGAGGGTTGAACTCACGATCTTGCGATTAA 1 chrXII:975785-976272 ( 14) TGAGGGTTGAACTCACGATCTTGCGATTAA 1 chrXI:74437-74927 ( 27) TGAGGGTTGAACTCACGATCTTGCGATTAA 1 chrVII:730956-731437 ( 26) TGAGGGTTGAACTCACGATCTTGCGATTAA 1 chrXIV:725913-726423 ( 25) CGAGGTTCGAACTCGCGCGGACAACCGTCC 1 chrII:347407-347933 ( 28) CGAGGTTCGAACTCGCGCGGACAACCGTCC 1 chrII:9372-9871 ( 57) CGAGGTTCGAACTCGCGCGGACAACCGTCC 1 chrIV:1095033-1095751 ( 37) TGTGGATCGAACACAGGACCTCCAGATATC 1 chrXIII:362880-363322 ( 46) CTAGAATCGAACCAGGGTTTCATCGGCCAC 1 chrXI:313099-313783 ( 19) CTAGAATCGAACCAGGGTTTCATCGGCCAC 1 chrVII:110395-110941 ( 16) CTAGAATCGAACCAGGGTTTCATCGGCCAC 1 chrV:434369-434766 ( 33) CTAGAATCGAACCAGGGTTTCATCGGCCAC 1 chrXVI:689292-689901 ( 62) CAGGATTTGAACCAGCGCGGGCAGAGCCCA 1 chrIII:227754-228216 ( 69) CAGGATTTGAACCAGCGCGGGCAGAGCCCA 1 chrX:374172-374765 ( 15) GGGGAATTGAACCCCGATCTGGCACGCGAC 1 chrIX:336049-336696 ( 36) GGGGAATTGAACCCCGATCTGGCACGCGAC 1 chrXVI:435609-436205 ( 45) TCAGGATCGAACTAAGGACCAACAGATTTG 1 chrVII:706940-707355 ( 20) TCAGGATCGAACTAAGGACCAACAGATTTG 1 chrXV:274484-275030 ( 28) CAGGATTCGAACCTGCGCAGGTAAAACCCA 1 chrVI:191280-191859 ( 3) CAGGATTCGAACCTGCGCAGGTAAAACCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGRATCGAACCSVBGAYCTYHNSRTTAM MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 40754 bayes= 7.49935 E= 4.9e-396 -1323 145 51 -40 -102 107 119 -293 -54 -255 197 -334 -1323 -1323 245 -1323 96 -1323 107 -1323 50 4 -13 -68 -1323 -1323 -1323 166 -1323 207 -1323 -47 -1323 -1323 245 -1323 166 -1323 -1323 -1323 166 -1323 -1323 -1323 -1323 245 -1323 -1323 -334 205 -255 -84 -176 119 95 -123 -23 45 136 -492 -260 62 103 -12 -112 -1323 222 -1323 88 -5 -155 -84 -393 129 -43 32 -393 172 51 -147 -260 45 -33 80 -147 162 -313 -7 -2 119 -181 -54 -7 72 19 -76 -134 82 159 -1323 50 11 82 -334 -176 -5 -113 103 -293 39 -43 88 66 4 32 -193 3 122 -68 -123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGRATCGAACCSVBGAYCTYHNSRTTAM MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 96 E= 4.9e-396 0.000000 0.500000 0.260417 0.239583 0.156250 0.385417 0.416667 0.041667 0.218750 0.031250 0.718750 0.031250 0.000000 0.000000 1.000000 0.000000 0.614583 0.000000 0.385417 0.000000 0.447917 0.187500 0.166667 0.197917 0.000000 0.000000 0.000000 1.000000 0.000000 0.770833 0.000000 0.229167 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.031250 0.760417 0.031250 0.177083 0.093750 0.416667 0.354167 0.135417 0.270833 0.250000 0.468750 0.010417 0.052083 0.281250 0.375000 0.291667 0.145833 0.000000 0.854167 0.000000 0.583333 0.177083 0.062500 0.177083 0.020833 0.447917 0.135417 0.395833 0.020833 0.604167 0.260417 0.114583 0.052083 0.250000 0.145833 0.552083 0.114583 0.562500 0.020833 0.302083 0.312500 0.416667 0.052083 0.218750 0.302083 0.302083 0.208333 0.187500 0.125000 0.322917 0.552083 0.000000 0.447917 0.197917 0.322917 0.031250 0.093750 0.177083 0.083333 0.645833 0.041667 0.239583 0.135417 0.583333 0.500000 0.187500 0.229167 0.083333 0.322917 0.427083 0.114583 0.135417 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGRATCGAACCSVBGAYCTYHNSRTTAM MEME-1 regular expression -------------------------------------------------------------------------------- [CGT][GC][GA]G[AG]AT[CT]GAACC[CG][GAC][GTC]GA[CT][CG][TC][CT][CAT][ACG][GC][AG]T[TC][AG][CA] -------------------------------------------------------------------------------- Time 321.81 secs. ******************************************************************************** ******************************************************************************** MOTIF ARTCWGRCGCCTTAMCCAMYTSGCCMAAG MEME-2 width = 29 sites = 62 llr = 1218 E-value = 2.9e-235 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARTCWGRCGCCTTAMCCAMYTSGCCMAAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A a4:1314::::2:961274:1211:6752 pos.-specific C ::261117:972::39715423:694121 probability G :623164:a:2:::1:11::2493:::25 matrix T ::6:4223:1:5a:::::1651::1:212 bits 2.5 2.2 * 2.0 ** * * 1.7 * ** * * * * Relative 1.5 * ** * * * * Entropy 1.2 ** * *** ** ** * * (28.3 bits) 1.0 ** * **** ** ** * **** 0.7 ** * **** ****** * **** 0.5 **** * **** ******** ***** 0.2 **** ************************ 0.0 ----------------------------- Multilevel AGTCTGACGCCTTAACCACTTGGCCAAAG consensus AGGATGT GC C AC C G CTC sequence C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTCWGRCGCCTTAMCCAMYTSGCCMAAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXVI:689292-689901 - 23 2.52e-14 ACAGATTTCA AGTCTGTCGCCTTAACCACTCGGCCATAG TGCCCAAAAT chrV:288219-288800 + 33 2.52e-14 ACAGATTTCA AGTCTGTCGCCTTAACCACTCGGCCATAG TGCCTATCAT chrXV:113575-114028 - 55 2.16e-13 CCACATTACT AGTGTGGCGCCTTACCAACTTGGCCATAG AAGCTAAATC chrXIV:560499-561063 + 2 2.16e-13 T AGTGTGGCGCCTTACCAACTTGGCCATAG AAGCCCGTTA chrXIV:104590-105124 - 2 2.16e-13 CCACATTACT AGTGTGGCGCCTTACCAACTTGGCCATAG A chrX:58810-59563 + 4 2.16e-13 ACT AGTGTGGCGCCTTACCAACTTGGCCATAG AAGCTTCTAT chrIX:325445-326112 - 24 2.16e-13 CCACATTACT AGTGTGGCGCCTTACCAACTTGGCCATAG AAGCTCGTAT chrIX:174725-175358 - 44 2.16e-13 CCACATTACT AGTGTGGCGCCTTACCAACTTGGCCATAG AAGCTCGTAC chrIII:294634-296377 - 33 2.16e-13 CCACATTACT AGTGTGGCGCCTTACCAACTTGGCCATAG AAGCTTAATT chrIII:227754-228216 - 11 6.16e-13 ATTCCATTCG AGTCTCTCGCCTTAACCACTCGGCCATAG TGCCATTTCG chrXIV:602081-602583 - 35 7.21e-12 CCGCGTTATT AGCACGGTGCCTTAACCAACTGGGCCAAG AGACCATTGT chrXIV:569694-570153 + 34 7.21e-12 CCGCGTTATT AGCACGGTGCCTTAACCAACTGGGCCAAG AGACCACTGT chrVII:738827-739490 - 19 7.21e-12 CCGCGTTATT AGCACGGTGCCTTAACCAACTGGGCCAAG AGACCTATTT chrV:551032-551604 + 57 7.21e-12 CCGCGTTATT AGCACGGTGCCTTAACCAACTGGGCCAAG AGACCTGTAA chrII:197190-197874 - 17 7.21e-12 CCGCGTTATT AGCACGGTGCCTTAACCAACTGGGCCAAG AGACCTTGAT chrX:523785-524293 + 72 8.30e-12 AAAGATTTCT AATCTTTCGCCTTAACCACTCGGCCAAGT chrIV:1305438-1305886 - 22 8.30e-12 AAAGATTTCT AATCTTTCGCCTTAACCACTCGGCCAAGT TGCCTTAATT chrIV:980738-981267 + 71 8.30e-12 AAAGATTTCT AATCTTTCGCCTTAACCACTCGGCCAAGT T chrIV:437477-438151 - 12 8.30e-12 AAAGATTTCT AATCTTTCGCCTTAACCACTCGGCCAAGT TGCCTTACTA chrII:226848-227400 - 5 8.30e-12 AAAGATTTCT AATCTTTCGCCTTAACCACTCGGCCAAGT TGCC chrI:182347-182783 + 56 8.30e-12 AAAGATTTCT AATCTTTCGCCTTAACCACTCGGCCAAGT TGCCAAAATT chrXVI:810437-810886 - 70 2.76e-11 AC AGTCGCACGCCTTAACCAACTTGGCCATG GAGTCGCAAA chrXV:487204-487702 - 41 2.76e-11 TGCGATTAAC AGTCGCACGCCTTAACCAACTTGGCCATG GAGTCTAACT chrXV:228037-228606 - 65 2.76e-11 GATTAAC AGTCGCACGCCTTAACCAACTTGGCCATG GAGTCTAATA chrXII:975785-976272 + 45 2.76e-11 TGCGATTAAC AGTCGCACGCCTTAACCAACTTGGCCATG GAGTCTTTTA chrVI:137152-137999 + 1 2.76e-11 . AGTCGCACGCCTTAACCAACTTGGCCATG GAGTCAGTCA chrXIV:725913-726423 + 66 1.86e-10 ACAGATCTTA AGTCTGCCGCCTTAGACCACTCGGCCAAC CCTCCA chrXI:83972-84448 - 53 1.86e-10 ACAGATCTTA AGTCTGCCGCCTTAGACCACTCGGCCAAC CCTCCATACA chrX:424320-424737 + 4 1.86e-10 TTA AGTCTGCCGCCTTAGACCACTCGGCCAAC CCTCCATCTT chrVI:191280-191859 + 62 1.86e-10 AGGAAATAGC AGGGCATCGCCTTAACCACTCGGCCACTG GGACAGAATC chrIV:519543-519964 - 45 1.86e-10 ACAGATCTTA AGTCTGCCGCCTTAGACCACTCGGCCAAC CCTCCGTAAA chrII:9372-9871 - 17 1.86e-10 ACAGATCTTA AGTCTGCCGCCTTAGACCACTCGGCCAAC CCTCCACGAA chrXV:663486-664257 + 31 4.40e-10 TCTGCGTGTT AAGCAGATGCCATAACCGACTAGACCACG AAACCACTAT chrXIII:420302-420919 + 68 4.40e-10 TCTGCGTGTT AAGCAGATGCCATAACCGACTAGACCACG AAAC chrXIII:372203-372759 + 54 4.40e-10 TCTGCGTGTT AAGCAGATGCCATAACCGACTAGACCACG AAACCAGGTT chrXI:307933-308503 + 16 4.40e-10 TCTGCGTGTT AAGCAGATGCCATAACCGACTAGACCACG AAACCACTTA chrVIII:85125-85589 + 31 4.40e-10 TCTGCGTGTT AAGCAGATGCCATAACCGACTAGACCACG AAACCAAATT chrVII:823289-823694 - 46 4.40e-10 TCTGCGTGTT AAGCAGATGCCATAACCGACTAGACCACG AAACCACTCT chrVII:412157-412583 + 14 4.40e-10 TCTGCGTGTT AAGCAGATGCCATAACCGACTAGACCACG AAACCAGTTT chrV:469252-469729 - 22 4.40e-10 TCTGCGTGTT AAGCAGATGCCATAACCGACTAGACCACG AAACCAATTA chrVI:226503-226914 + 70 4.88e-10 TATGATTAAG AGTCATACGCGCTACCGATTGCGCCAACA AG chrV:435586-436063 + 18 4.88e-10 TATGATTAAG AGTCATACGCGCTACCGATTGCGCCAACA AGGCTCTTAT chrV:135197-135704 + 65 4.88e-10 TATGATTAAG AGTCATACGCGCTACCGATTGCGCCAACA AGGCTTT chrIX:299974-300542 + 60 4.88e-10 TATGATTAAG AGTCATACGCGCTACCGATTGCGCCAACA AGGCTATTTC chrIV:1352316-1352758 + 19 4.88e-10 TATGATTAAG AGTCATACGCGCTACCGATTGCGCCAACA AGGCTATTTC chrXV:853999-854452 + 52 1.08e-09 CTTCCTTGCA AGGGAAGCGCGCTACCAACTGCGCCATGT GCCCTGATGA chrXII:214644-215172 + 65 1.08e-09 CTTCCTTGCA AGGGAAGCGCGCTACCAACTGCGCCATGT GCCCTAA chrVII:857250-857631 + 68 1.31e-09 ATATTTCTTG AATCAGGCGCCTTAGACCGCTCGGCCAAA CAAC chrVII:205305-205747 - 50 1.31e-09 ATATTGCTTG AATCAGGCGCCTTAGACCGCTCGGCCAAA CAACCACTTA chrXI:490560-491385 - 50 2.09e-09 TCTGGTTCGT AGCCAGACGCCGTGACCATTGGGCCACGA GGAACAAGAA chrV:492197-492566 + 61 2.09e-09 TCTGGTTCGT AGCCAGACGCCGTGACCATTGGGCCACGA GGAATAGGAT chrVII:774096-774646 - 32 5.02e-09 CTCCCATGCT AAGGGAGCGCGCTACCGACTACGCCACAC GCCCAATTAA chrVI:204785-205236 + 4 5.02e-09 GCT AAGGGAGCGCGCTACCGACTACGCCACAC GCCCGAACGT chrVIII:237700-238154 + 30 1.66e-08 TTTTTTCTTC AGTCTGGCGCTCTCCCAACTGAGCTAAAT CCGCTTACTA chrXIV:374718-375114 - 7 2.07e-08 GTTTTTCTTC AGTCTGGCGCTCTCCCAACTGAGCTAAGT CCGCTT chrIV:884150-884579 - 51 1.32e-07 TGTTGCTATA AGCACGAAGCTCTAACCACTGAGCTACAC GAGCATTTTC chrIII:168099-168549 + 66 6.85e-07 TCCGGATCAA AACCGAAAGTGATAACCACTACACTATAG GACCAG chrVII:401321-401776 + 68 1.04e-06 CCACGGTGAA AGCGTGATGTGATAGCCGTTACACTATAT CGGA chrV:130854-131396 + 46 1.29e-06 TTCGGATCAA AACCGAAAGTGATAACCACTACACTATAA AACCTCTTAA chrVII:110395-110941 + 46 1.54e-06 CATCGGCCAC AACGATGTGTACTAACCACTATACTAAGA TGGCAGGTAA chrV:434369-434766 + 63 1.54e-06 CATCGGCCAC AACGATGTGTACTAACCACTATACTAAGA TGGCGACTT chrVII:779372-779906 - 31 1.67e-06 CCACCTTGGA AGGGTGGGATGATAACCACTACACTAACC GCCCGGGGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTCWGRCGCCTTAMCCAMYTSGCCMAAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:689292-689901 2.5e-14 22_[-2]_49 chrV:288219-288800 2.5e-14 32_[+2]_39 chrXV:113575-114028 2.2e-13 54_[-2]_17 chrXIV:560499-561063 2.2e-13 1_[+2]_70 chrXIV:104590-105124 2.2e-13 1_[-2]_70 chrX:58810-59563 2.2e-13 3_[+2]_68 chrIX:325445-326112 2.2e-13 23_[-2]_48 chrIX:174725-175358 2.2e-13 43_[-2]_28 chrIII:294634-296377 2.2e-13 32_[-2]_39 chrIII:227754-228216 6.2e-13 10_[-2]_61 chrXIV:602081-602583 7.2e-12 34_[-2]_37 chrXIV:569694-570153 7.2e-12 33_[+2]_38 chrVII:738827-739490 7.2e-12 18_[-2]_53 chrV:551032-551604 7.2e-12 56_[+2]_15 chrII:197190-197874 7.2e-12 16_[-2]_55 chrX:523785-524293 8.3e-12 71_[+2] chrIV:1305438-1305886 8.3e-12 21_[-2]_50 chrIV:980738-981267 8.3e-12 70_[+2]_1 chrIV:437477-438151 8.3e-12 11_[-2]_60 chrII:226848-227400 8.3e-12 4_[-2]_67 chrI:182347-182783 8.3e-12 55_[+2]_16 chrXVI:810437-810886 2.8e-11 69_[-2]_2 chrXV:487204-487702 2.8e-11 40_[-2]_31 chrXV:228037-228606 2.8e-11 64_[-2]_7 chrXII:975785-976272 2.8e-11 44_[+2]_27 chrVI:137152-137999 2.8e-11 [+2]_71 chrXIV:725913-726423 1.9e-10 65_[+2]_6 chrXI:83972-84448 1.9e-10 52_[-2]_19 chrX:424320-424737 1.9e-10 3_[+2]_68 chrVI:191280-191859 1.9e-10 61_[+2]_10 chrIV:519543-519964 1.9e-10 44_[-2]_27 chrII:9372-9871 1.9e-10 16_[-2]_55 chrXV:663486-664257 4.4e-10 30_[+2]_41 chrXIII:420302-420919 4.4e-10 67_[+2]_4 chrXIII:372203-372759 4.4e-10 53_[+2]_18 chrXI:307933-308503 4.4e-10 15_[+2]_56 chrVIII:85125-85589 4.4e-10 30_[+2]_41 chrVII:823289-823694 4.4e-10 45_[-2]_26 chrVII:412157-412583 4.4e-10 13_[+2]_58 chrV:469252-469729 4.4e-10 21_[-2]_50 chrVI:226503-226914 4.9e-10 69_[+2]_2 chrV:435586-436063 4.9e-10 17_[+2]_54 chrV:135197-135704 4.9e-10 64_[+2]_7 chrIX:299974-300542 4.9e-10 59_[+2]_12 chrIV:1352316-1352758 4.9e-10 18_[+2]_53 chrXV:853999-854452 1.1e-09 51_[+2]_20 chrXII:214644-215172 1.1e-09 64_[+2]_7 chrVII:857250-857631 1.3e-09 67_[+2]_4 chrVII:205305-205747 1.3e-09 49_[-2]_22 chrXI:490560-491385 2.1e-09 49_[-2]_22 chrV:492197-492566 2.1e-09 60_[+2]_11 chrVII:774096-774646 5e-09 31_[-2]_40 chrVI:204785-205236 5e-09 3_[+2]_68 chrVIII:237700-238154 1.7e-08 29_[+2]_42 chrXIV:374718-375114 2.1e-08 6_[-2]_65 chrIV:884150-884579 1.3e-07 50_[-2]_21 chrIII:168099-168549 6.9e-07 65_[+2]_6 chrVII:401321-401776 1e-06 67_[+2]_4 chrV:130854-131396 1.3e-06 45_[+2]_26 chrVII:110395-110941 1.5e-06 45_[+2]_26 chrV:434369-434766 1.5e-06 62_[+2]_9 chrVII:779372-779906 1.7e-06 30_[-2]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTCWGRCGCCTTAMCCAMYTSGCCMAAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARTCWGRCGCCTTAMCCAMYTSGCCMAAG width=29 seqs=62 chrXVI:689292-689901 ( 23) AGTCTGTCGCCTTAACCACTCGGCCATAG 1 chrV:288219-288800 ( 33) AGTCTGTCGCCTTAACCACTCGGCCATAG 1 chrXV:113575-114028 ( 55) AGTGTGGCGCCTTACCAACTTGGCCATAG 1 chrXIV:560499-561063 ( 2) AGTGTGGCGCCTTACCAACTTGGCCATAG 1 chrXIV:104590-105124 ( 2) AGTGTGGCGCCTTACCAACTTGGCCATAG 1 chrX:58810-59563 ( 4) AGTGTGGCGCCTTACCAACTTGGCCATAG 1 chrIX:325445-326112 ( 24) AGTGTGGCGCCTTACCAACTTGGCCATAG 1 chrIX:174725-175358 ( 44) AGTGTGGCGCCTTACCAACTTGGCCATAG 1 chrIII:294634-296377 ( 33) AGTGTGGCGCCTTACCAACTTGGCCATAG 1 chrIII:227754-228216 ( 11) AGTCTCTCGCCTTAACCACTCGGCCATAG 1 chrXIV:602081-602583 ( 35) AGCACGGTGCCTTAACCAACTGGGCCAAG 1 chrXIV:569694-570153 ( 34) AGCACGGTGCCTTAACCAACTGGGCCAAG 1 chrVII:738827-739490 ( 19) AGCACGGTGCCTTAACCAACTGGGCCAAG 1 chrV:551032-551604 ( 57) AGCACGGTGCCTTAACCAACTGGGCCAAG 1 chrII:197190-197874 ( 17) AGCACGGTGCCTTAACCAACTGGGCCAAG 1 chrX:523785-524293 ( 72) AATCTTTCGCCTTAACCACTCGGCCAAGT 1 chrIV:1305438-1305886 ( 22) AATCTTTCGCCTTAACCACTCGGCCAAGT 1 chrIV:980738-981267 ( 71) AATCTTTCGCCTTAACCACTCGGCCAAGT 1 chrIV:437477-438151 ( 12) AATCTTTCGCCTTAACCACTCGGCCAAGT 1 chrII:226848-227400 ( 5) AATCTTTCGCCTTAACCACTCGGCCAAGT 1 chrI:182347-182783 ( 56) AATCTTTCGCCTTAACCACTCGGCCAAGT 1 chrXVI:810437-810886 ( 70) AGTCGCACGCCTTAACCAACTTGGCCATG 1 chrXV:487204-487702 ( 41) AGTCGCACGCCTTAACCAACTTGGCCATG 1 chrXV:228037-228606 ( 65) AGTCGCACGCCTTAACCAACTTGGCCATG 1 chrXII:975785-976272 ( 45) AGTCGCACGCCTTAACCAACTTGGCCATG 1 chrVI:137152-137999 ( 1) AGTCGCACGCCTTAACCAACTTGGCCATG 1 chrXIV:725913-726423 ( 66) AGTCTGCCGCCTTAGACCACTCGGCCAAC 1 chrXI:83972-84448 ( 53) AGTCTGCCGCCTTAGACCACTCGGCCAAC 1 chrX:424320-424737 ( 4) AGTCTGCCGCCTTAGACCACTCGGCCAAC 1 chrVI:191280-191859 ( 62) AGGGCATCGCCTTAACCACTCGGCCACTG 1 chrIV:519543-519964 ( 45) AGTCTGCCGCCTTAGACCACTCGGCCAAC 1 chrII:9372-9871 ( 17) AGTCTGCCGCCTTAGACCACTCGGCCAAC 1 chrXV:663486-664257 ( 31) AAGCAGATGCCATAACCGACTAGACCACG 1 chrXIII:420302-420919 ( 68) AAGCAGATGCCATAACCGACTAGACCACG 1 chrXIII:372203-372759 ( 54) AAGCAGATGCCATAACCGACTAGACCACG 1 chrXI:307933-308503 ( 16) AAGCAGATGCCATAACCGACTAGACCACG 1 chrVIII:85125-85589 ( 31) AAGCAGATGCCATAACCGACTAGACCACG 1 chrVII:823289-823694 ( 46) AAGCAGATGCCATAACCGACTAGACCACG 1 chrVII:412157-412583 ( 14) AAGCAGATGCCATAACCGACTAGACCACG 1 chrV:469252-469729 ( 22) AAGCAGATGCCATAACCGACTAGACCACG 1 chrVI:226503-226914 ( 70) AGTCATACGCGCTACCGATTGCGCCAACA 1 chrV:435586-436063 ( 18) AGTCATACGCGCTACCGATTGCGCCAACA 1 chrV:135197-135704 ( 65) AGTCATACGCGCTACCGATTGCGCCAACA 1 chrIX:299974-300542 ( 60) AGTCATACGCGCTACCGATTGCGCCAACA 1 chrIV:1352316-1352758 ( 19) AGTCATACGCGCTACCGATTGCGCCAACA 1 chrXV:853999-854452 ( 52) AGGGAAGCGCGCTACCAACTGCGCCATGT 1 chrXII:214644-215172 ( 65) AGGGAAGCGCGCTACCAACTGCGCCATGT 1 chrVII:857250-857631 ( 68) AATCAGGCGCCTTAGACCGCTCGGCCAAA 1 chrVII:205305-205747 ( 50) AATCAGGCGCCTTAGACCGCTCGGCCAAA 1 chrXI:490560-491385 ( 50) AGCCAGACGCCGTGACCATTGGGCCACGA 1 chrV:492197-492566 ( 61) AGCCAGACGCCGTGACCATTGGGCCACGA 1 chrVII:774096-774646 ( 32) AAGGGAGCGCGCTACCGACTACGCCACAC 1 chrVI:204785-205236 ( 4) AAGGGAGCGCGCTACCGACTACGCCACAC 1 chrVIII:237700-238154 ( 30) AGTCTGGCGCTCTCCCAACTGAGCTAAAT 1 chrXIV:374718-375114 ( 7) AGTCTGGCGCTCTCCCAACTGAGCTAAGT 1 chrIV:884150-884579 ( 51) AGCACGAAGCTCTAACCACTGAGCTACAC 1 chrIII:168099-168549 ( 66) AACCGAAAGTGATAACCACTACACTATAG 1 chrVII:401321-401776 ( 68) AGCGTGATGTGATAGCCGTTACACTATAT 1 chrV:130854-131396 ( 46) AACCGAAAGTGATAACCACTACACTATAA 1 chrVII:110395-110941 ( 46) AACGATGTGTACTAACCACTATACTAAGA 1 chrV:434369-434766 ( 63) AACGATGTGTACTAACCACTATACTAAGA 1 chrVII:779372-779906 ( 31) AGGGTGGGATGATAACCACTACACTAACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTCWGRCGCCTTAMCCAMYTSGCCMAAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 41328 bayes= 6.43685 E= 2.9e-235 166 -1260 -1260 -1260 16 -1260 182 -1260 -1260 20 30 83 -171 182 50 -1260 10 -70 -33 35 -149 -92 167 -60 29 -118 102 -97 -271 189 -350 -30 -429 -1260 243 -1260 -1260 230 -1260 -171 -329 196 20 -271 -71 30 -250 79 -1260 -1260 -1260 166 156 -250 -250 -1260 87 67 -50 -1260 -149 228 -1260 -1260 -84 196 -70 -1260 123 -70 -33 -1260 23 135 -250 -130 -1260 114 -1260 91 -130 -18 8 70 -84 82 108 -149 -171 -1260 230 -1260 -130 171 58 -1260 -1260 222 -1260 -113 91 114 -1260 -1260 106 -92 -1260 -39 56 30 20 -171 -71 -33 140 -84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTCWGRCGCCTTAMCCAMYTSGCCMAAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 62 E= 2.9e-235 1.000000 0.000000 0.000000 0.000000 0.354839 0.000000 0.645161 0.000000 0.000000 0.209677 0.225806 0.564516 0.096774 0.645161 0.258065 0.000000 0.338710 0.112903 0.145161 0.403226 0.112903 0.096774 0.580645 0.209677 0.387097 0.080645 0.370968 0.161290 0.048387 0.677419 0.016129 0.258065 0.016129 0.000000 0.983871 0.000000 0.000000 0.903226 0.000000 0.096774 0.032258 0.709677 0.209677 0.048387 0.193548 0.225806 0.032258 0.548387 0.000000 0.000000 0.000000 1.000000 0.935484 0.032258 0.032258 0.000000 0.580645 0.290323 0.129032 0.000000 0.112903 0.887097 0.000000 0.000000 0.177419 0.709677 0.112903 0.000000 0.741935 0.112903 0.145161 0.000000 0.370968 0.467742 0.032258 0.129032 0.000000 0.403226 0.000000 0.596774 0.129032 0.161290 0.193548 0.516129 0.177419 0.322581 0.387097 0.112903 0.096774 0.000000 0.903226 0.000000 0.129032 0.596774 0.274194 0.000000 0.000000 0.854839 0.000000 0.145161 0.596774 0.403226 0.000000 0.000000 0.661290 0.096774 0.000000 0.241935 0.467742 0.225806 0.209677 0.096774 0.193548 0.145161 0.483871 0.177419 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTCWGRCGCCTTAMCCAMYTSGCCMAAG MEME-2 regular expression -------------------------------------------------------------------------------- A[GA][TGC][CG][TA][GT][AG][CT]GC[CG][TC]TA[AC]CCA[CA][TC]T[GC]G[CG]C[AC][AT][ACG]G -------------------------------------------------------------------------------- Time 607.87 secs. ******************************************************************************** ******************************************************************************** MOTIF RCACCCATACAYC MEME-3 width = 13 sites = 101 llr = 1101 E-value = 2.3e-098 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCACCCATACAYC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 62a:::618:8:2 pos.-specific C 18:7aa:2:a256 probability G 31::::312:::: matrix T 1::3::17:::52 bits 2.5 * 2.2 ** * 2.0 ** * 1.7 ** * Relative 1.5 ** ** * Entropy 1.2 ***** * (15.7 bits) 1.0 ***** *** 0.7 ****** **** 0.5 ************* 0.2 ************* 0.0 ------------- Multilevel ACACCCATACATC consensus G T G G CCT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACCCATACAYC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------- chrX:690622-690822 + 43 1.50e-08 GGTCATCAAC ACACCCGTACACC ACCATGTGCG chrXIII:5337-5738 + 56 6.18e-08 ATATACACCC ACACCCACACACC ACACCCACAC chrXII:1064836-1065346 - 11 6.18e-08 CCACACCCAC ACACCCACACACC ACACCCACAC chrXII:5477-5916 + 20 6.18e-08 TATATACACC ACACCCACACACC ACACCCACAC chrX:160020-160282 + 73 6.18e-08 AATGTGTGAC ACACCCATACCCC ATAATGTTGC chrVIII:562300-562581 - 76 6.18e-08 ACACACACCC ACACCCACACACC ACACCCACAC chrVII:371204-371456 + 75 6.18e-08 AAAAATACCG GCACCCATGCACC TCACACCGCC chrV:6138-6551 + 55 6.18e-08 ACCCACACCC ACACCCACACACC ATGCTCACCT chrIV:28-339 + 4 6.18e-08 CCC ACACCCACACACC ACACACTACC chrVI:95477-95851 - 22 6.88e-08 AATCAGTCAT GCACCCACACACC GGACTGCGTA chrXIII:145873-146277 + 59 1.27e-07 GCATTTTTGT ACATCCATACACC ATACACCATA chrII:89641-89998 - 32 1.27e-07 TTGTGACTTT ACATCCATACACC CTCTTTAACA chrIV:525097-525339 - 35 1.69e-07 TATTTTCACA ACACCCATACACT ACACCAAAAA chrIV:538982-539210 + 59 1.95e-07 ATGAATTATC ACACCCACACCCC TCATTCAATC chrIV:411221-411646 + 52 1.95e-07 AACAAATCAA ACACCCACACCCC GGGCACCCAA chrVIII:125889-126299 + 58 2.14e-07 AGACGTTAAT GCATCCGTACACC TACATCTTTA chrXII:921740-921952 - 44 2.43e-07 GAAGATGTAT GCACCCGTGCCCC CGCTGTAGTA chrIV:1355693-1356036 - 25 3.11e-07 GGTTAAAATT ACACCCATACATT TATAGTATTT chrXII:932088-932493 - 27 3.62e-07 ATACATCCGT ACATCCGTACATC CGTACATCTG chrII:181325-181662 + 52 3.62e-07 CCTTTACAAA GCACCCATACATT ACATTGAATA chrX:545470-545660 - 42 4.40e-07 GAAAAGACAG CCACCCATGCACC GCACTCGCAC chrV:85131-85450 + 60 5.17e-07 GTGATATCAT CCACCCATACCCC TCGATGTATT chrIII:58744-59004 + 47 5.17e-07 TTGCGTGGGT ACATCCGTGCACC ATTTCTGAAA chrI:81862-82286 - 86 5.17e-07 GT ACATCCGTGCACC TCCGCTAGAT chrXVI:794428-794810 + 86 5.81e-07 ACATCTCCAA ACACCCATACATA TT chrXVI:279964-280219 + 73 5.81e-07 GGAGAAGTCC GCATCCGTGCACC TCACAATTCC chrVII:1000317-1000594 + 53 5.81e-07 CACTAGGATA GCACCCAAACACC TGCATATTTG chrVII:276839-277615 + 50 6.51e-07 TATTTAAGCT AGACCCATACACC CGCTCTATGG chrXV:79778-80112 - 53 7.54e-07 CTCCATGTAA ACACCCGTACATA TTAAATAAGT chrXII:922120-922570 + 50 7.54e-07 TTTGAAATTG ACACCCGTACATA TTCCAATTCT chrXVI:731921-732324 + 32 8.85e-07 CATCGTCAGT ACACCCATACCTT TAGGATGGTT chrXV:161087-161467 - 19 8.85e-07 TCTGGCAACC AAACCCATACATC GGGATTCCTA chrX:391867-392106 + 58 8.85e-07 CACACGCCCC ACACCCAGACCTC CCTGCGAGCG chrV:305175-306875 + 10 8.85e-07 CGGGACTGT ACACCCACACATT TACAAGCCCA chrXIII:731822-732589 + 51 1.02e-06 AAGACATAAT ACATCCGCACATC GCGCATGTGT chrXII:1028199-1028577 + 60 1.02e-06 AGACAAAATA TCACCCATGCACC AAAATGTATG chrVII:254064-254567 + 63 1.02e-06 GGACATTTTT GAACCCATACATC TTTCAATATG chrII:476856-477673 + 20 1.02e-06 CATTCATGTT GCACCCACACATT TATACACCCA chrVIII:175076-175335 + 27 1.18e-06 CGCAATGCTG AGACCCATACATC ATGAAACTCC chrXII:1012119-1012304 + 77 1.31e-06 ATGAGGAATA GAACCCATGCACC ACACGCAAAT chrV:396126-396578 + 77 1.31e-06 CCTGTTGTAT ACATCCGTACACT TTTGTGAACC chrXII:903365-903668 + 56 1.62e-06 TAGAAGCATT GGACCCATGCACC ACATGCATTA chrVIII:505811-506207 - 42 1.83e-06 AGACAATTAT GCATCCATACATT TCACCCAGAC chrIV:358097-358436 - 33 1.83e-06 GGTGTACACA CCACCCATACATT ATCTGACAAG chrXVI:378666-378997 - 59 2.05e-06 TTCAGAGAAA ACATCCGTACATT CGAGTTCTCA chrXIV:495215-495603 - 19 2.05e-06 TACACTATAC ACACCCAAACCTC CTTTAAAAAT chrIV:1359227-1360025 + 20 2.05e-06 AAGACATTAA ACATCCGTACATT ACGCACCCAT chrXV:1028443-1029405 - 33 2.32e-06 TTACCATTGT GCATCCGTACATT TGATTTGTTT chrXI:382209-382472 + 15 2.32e-06 TGCTGCTGTT GCATCCGGACATC ACACCCAACA chrII:44987-45340 + 57 2.32e-06 AGACAATCAT GCATCCGTACATT CTATGTATGT chrXV:1025702-1026077 + 37 2.61e-06 CATATGCTGA ACACCCATTCATC ACGTGTAATT chrXVI:280644-282954 + 17 3.16e-06 TTACCTCTTT ACACCCTTACACT TCCTTTGATT chrXIII:500635-501293 + 62 3.16e-06 AGACGGCCTA ACATCCGTACATA GTCATAAGGC chrXV:505109-505494 + 43 3.95e-06 CATTCATTTC AAACCCATACACA ATGAACCTTA chrXV:901427-901688 - 33 4.38e-06 TCGGGACTGT TCACCCGTACATT TTACGTTTCC chrXIV:444443-444794 - 53 4.38e-06 TCTACGGTCT CCATCCGTACCTC TTTAAATCCG chrXII:781466-781875 - 36 4.38e-06 TAGAGAAAAT GCATCCGTGCATT TTCATAAACC chrVII:648880-649400 - 44 4.38e-06 CGTACAACGA GAACCCATACATT ACTTTTTTTA chrXVI:135480-135839 - 17 5.39e-06 AAGACTGCTA AAATCCGTGCACC CCGTAAAGTA chrXV:968084-968427 - 64 5.39e-06 CGAGCAGCGC ACGCCCACGCACC CCACGCTTTT chrXV:216257-216669 + 46 5.39e-06 GAACATCCGA GCACCCGCGCCTT CCTCAACCCA chrXII:48659-49109 - 69 5.39e-06 ATCCCAATGA AGATCCGTACATC TTAGACACCC chrXI:67793-68059 + 37 5.39e-06 ACCCGTGCTG AAATCCGTGCACC GCATCAAATT chrVII:856749-856970 - 55 5.39e-06 TTGAGGGTAC CCGCCCATACACC GCACCAATGG chrV:270354-270693 + 14 5.39e-06 AAAAAATTTA TCACCCATACATA CCACTAAATG chrVIII:36021-36514 - 37 5.89e-06 TATGAAGAAA ACACCCAAACATA TCTAGGCCAT chrVII:788341-788735 - 41 5.89e-06 ATTCCTTACA ACATCCGTGCATA CTCTAAACCC chrVIII:290659-292816 - 72 6.49e-06 GCCCACCTGA CCATCCATACATT CAATATGAGT chrXVI:699943-700673 + 2 7.15e-06 A ACACCCAAGCACA GCATACTAAA chrXVI:520147-520529 + 76 7.15e-06 CCTGAGTGTT CCACCCAGGCCTC GCCGGAGGAA chrIII:68369-68625 - 87 7.15e-06 T AAACCCATGCACA GTGACTCACG chrIV:341243-341629 - 57 7.78e-06 GTCTACTTTT CCATCCGTACATT TTAACACCCA chrX:651206-651608 + 64 1.02e-05 TTATACAACA ACACCCATATACC CATAATTATT chrVII:483232-483761 - 5 1.02e-05 CCGCAGAAAT AAACCCATACACG AGAC chrX:90071-90427 + 62 1.32e-05 CTGGACATTC TCACCCATACATG GCCTTGTTTT chrIV:321595-321986 + 59 1.43e-05 TCATACCTTT ACCTCCGTACACC AATCTTTATT chrXII:282475-282882 + 29 1.69e-05 GTGCTTTTTT ACACCTGTACATC TTTTCCCTCC chrXI:518901-519194 - 32 1.69e-05 CGCGGCCTCG AGATCCAGGCACC AGGAACTAGG chrX:617751-618274 - 28 1.69e-05 TAAGGGATTC GAACCCTTGCATC CGAAGATATC chrXV:978810-979159 - 4 1.83e-05 CGGTGTCGTA GAACCCATTCATC CTT chrXV:673516-674109 - 65 1.83e-05 TGGACTTTCA AAAGCCGTACACC TCTTGTACTG chrIV:1492467-1493095 - 29 1.83e-05 CATGGATAAT TCATCCATGCACA TCTCACTTTA chrII:167609-168454 + 54 1.83e-05 CAGTGTTTTA AAACCCAGACATA TTTTTCACCA chrXIV:229443-230987 + 76 2.15e-05 AATAATCTCA ACAGCCATACCTT CATCATAAAC chrVII:228490-228842 + 13 2.30e-05 ATTAAAAAAT AAACCCAAACATT TCTGGAAAAC chrIX:99642-100045 - 35 2.30e-05 TGCAATTAAA GCATCGGTACACC ATGTAACACC chrIV:1013685-1013952 + 75 2.30e-05 TGGTTAAAGG GCACCCAGAGCCC ACACCCATTG chrXIII:552541-553193 - 43 2.49e-05 TCTGGAACGA GCACCCTTACCAC CGAATTTCTT chrIV:306664-307247 + 52 2.49e-05 TCTAGAACGA GCACCCTTACCAC CGAATTTCTT chrIX:131809-132114 + 51 2.69e-05 TAATTTTTCA GCATCCTGACCTC CCCCCCAAAT chrIX:1-221 + 5 2.69e-05 CACC ACACCCACACCAA CTCTCTCTCA chrII:813000-813183 - 87 2.69e-05 C ACACCCTAACACA ATCCTAACAG chrXI:99743-100007 + 25 3.12e-05 CCATGCCCGT GCACCCACGGCTC CTCGGAGGCC chrVII:919835-920238 + 86 3.12e-05 AATATGATAA AAACCCAAACATA TT chrIX:254251-254574 - 46 3.37e-05 GTGGTACTTC GCACCCAGACCAT ACGTCTTCCA chrXV:980478-981455 - 56 4.16e-05 TATCAACTAT ACATCCACTCATT ATTGGCATAG chrVIII:296788-297246 - 68 4.16e-05 GACGAAATTG TGACCCATACCCA CCGAAGAAAC chrXII:424209-424441 + 33 4.47e-05 GTAAGTCGCT ACACACGTACATT GCTGTGGTGC chrVII:479202-482983 + 21 4.47e-05 GTCTCTTGGT GGATCCATACATG GCATAACACC chrII:165056-165443 + 58 4.47e-05 ATTACGAATC TAGCCCATACACC GCGTTAGAGC chrXVI:76171-76728 + 74 5.13e-05 TGCGTCTTTC GCAACCAGACCTC TCGGTCATGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACCCATACAYC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:690622-690822 1.5e-08 42_[+3]_45 chrXIII:5337-5738 6.2e-08 55_[+3]_32 chrXII:1064836-1065346 6.2e-08 10_[-3]_77 chrXII:5477-5916 6.2e-08 19_[+3]_68 chrX:160020-160282 6.2e-08 72_[+3]_15 chrVIII:562300-562581 6.2e-08 75_[-3]_12 chrVII:371204-371456 6.2e-08 74_[+3]_13 chrV:6138-6551 6.2e-08 54_[+3]_33 chrIV:28-339 6.2e-08 3_[+3]_84 chrVI:95477-95851 6.9e-08 21_[-3]_66 chrXIII:145873-146277 1.3e-07 58_[+3]_29 chrII:89641-89998 1.3e-07 31_[-3]_56 chrIV:525097-525339 1.7e-07 34_[-3]_53 chrIV:538982-539210 1.9e-07 58_[+3]_29 chrIV:411221-411646 1.9e-07 51_[+3]_36 chrVIII:125889-126299 2.1e-07 57_[+3]_30 chrXII:921740-921952 2.4e-07 43_[-3]_44 chrIV:1355693-1356036 3.1e-07 24_[-3]_63 chrXII:932088-932493 3.6e-07 26_[-3]_61 chrII:181325-181662 3.6e-07 51_[+3]_36 chrX:545470-545660 4.4e-07 41_[-3]_46 chrV:85131-85450 5.2e-07 59_[+3]_28 chrIII:58744-59004 5.2e-07 46_[+3]_41 chrI:81862-82286 5.2e-07 85_[-3]_2 chrXVI:794428-794810 5.8e-07 85_[+3]_2 chrXVI:279964-280219 5.8e-07 72_[+3]_15 chrVII:1000317-1000594 5.8e-07 52_[+3]_35 chrVII:276839-277615 6.5e-07 49_[+3]_38 chrXV:79778-80112 7.5e-07 52_[-3]_35 chrXII:922120-922570 7.5e-07 49_[+3]_38 chrXVI:731921-732324 8.8e-07 31_[+3]_56 chrXV:161087-161467 8.8e-07 18_[-3]_69 chrX:391867-392106 8.8e-07 57_[+3]_30 chrV:305175-306875 8.8e-07 9_[+3]_78 chrXIII:731822-732589 1e-06 50_[+3]_37 chrXII:1028199-1028577 1e-06 59_[+3]_28 chrVII:254064-254567 1e-06 62_[+3]_25 chrII:476856-477673 1e-06 19_[+3]_68 chrVIII:175076-175335 1.2e-06 26_[+3]_61 chrXII:1012119-1012304 1.3e-06 76_[+3]_11 chrV:396126-396578 1.3e-06 76_[+3]_11 chrXII:903365-903668 1.6e-06 55_[+3]_32 chrVIII:505811-506207 1.8e-06 41_[-3]_46 chrIV:358097-358436 1.8e-06 32_[-3]_55 chrXVI:378666-378997 2.1e-06 58_[-3]_29 chrXIV:495215-495603 2.1e-06 18_[-3]_69 chrIV:1359227-1360025 2.1e-06 19_[+3]_68 chrXV:1028443-1029405 2.3e-06 32_[-3]_55 chrXI:382209-382472 2.3e-06 14_[+3]_73 chrII:44987-45340 2.3e-06 56_[+3]_31 chrXV:1025702-1026077 2.6e-06 36_[+3]_51 chrXVI:280644-282954 3.2e-06 16_[+3]_71 chrXIII:500635-501293 3.2e-06 61_[+3]_26 chrXV:505109-505494 4e-06 42_[+3]_45 chrXV:901427-901688 4.4e-06 32_[-3]_55 chrXIV:444443-444794 4.4e-06 52_[-3]_35 chrXII:781466-781875 4.4e-06 35_[-3]_52 chrVII:648880-649400 4.4e-06 43_[-3]_44 chrXVI:135480-135839 5.4e-06 16_[-3]_71 chrXV:968084-968427 5.4e-06 63_[-3]_24 chrXV:216257-216669 5.4e-06 45_[+3]_42 chrXII:48659-49109 5.4e-06 68_[-3]_19 chrXI:67793-68059 5.4e-06 36_[+3]_51 chrVII:856749-856970 5.4e-06 54_[-3]_33 chrV:270354-270693 5.4e-06 13_[+3]_74 chrVIII:36021-36514 5.9e-06 36_[-3]_51 chrVII:788341-788735 5.9e-06 40_[-3]_47 chrVIII:290659-292816 6.5e-06 71_[-3]_16 chrXVI:699943-700673 7.1e-06 1_[+3]_86 chrXVI:520147-520529 7.1e-06 75_[+3]_12 chrIII:68369-68625 7.1e-06 86_[-3]_1 chrIV:341243-341629 7.8e-06 56_[-3]_31 chrX:651206-651608 1e-05 63_[+3]_24 chrVII:483232-483761 1e-05 4_[-3]_83 chrX:90071-90427 1.3e-05 61_[+3]_26 chrIV:321595-321986 1.4e-05 58_[+3]_29 chrXII:282475-282882 1.7e-05 28_[+3]_59 chrXI:518901-519194 1.7e-05 31_[-3]_56 chrX:617751-618274 1.7e-05 27_[-3]_60 chrXV:978810-979159 1.8e-05 3_[-3]_84 chrXV:673516-674109 1.8e-05 64_[-3]_23 chrIV:1492467-1493095 1.8e-05 28_[-3]_59 chrII:167609-168454 1.8e-05 53_[+3]_34 chrXIV:229443-230987 2.1e-05 75_[+3]_12 chrVII:228490-228842 2.3e-05 12_[+3]_75 chrIX:99642-100045 2.3e-05 34_[-3]_53 chrIV:1013685-1013952 2.3e-05 74_[+3]_13 chrXIII:552541-553193 2.5e-05 42_[-3]_45 chrIV:306664-307247 2.5e-05 51_[+3]_36 chrIX:131809-132114 2.7e-05 50_[+3]_37 chrIX:1-221 2.7e-05 4_[+3]_83 chrII:813000-813183 2.7e-05 86_[-3]_1 chrXI:99743-100007 3.1e-05 24_[+3]_63 chrVII:919835-920238 3.1e-05 85_[+3]_2 chrIX:254251-254574 3.4e-05 45_[-3]_42 chrXV:980478-981455 4.2e-05 55_[-3]_32 chrVIII:296788-297246 4.2e-05 67_[-3]_20 chrXII:424209-424441 4.5e-05 32_[+3]_55 chrVII:479202-482983 4.5e-05 20_[+3]_67 chrII:165056-165443 4.5e-05 57_[+3]_30 chrXVI:76171-76728 5.1e-05 73_[+3]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACCCATACAYC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCACCCATACAYC width=13 seqs=101 chrX:690622-690822 ( 43) ACACCCGTACACC 1 chrXIII:5337-5738 ( 56) ACACCCACACACC 1 chrXII:1064836-1065346 ( 11) ACACCCACACACC 1 chrXII:5477-5916 ( 20) ACACCCACACACC 1 chrX:160020-160282 ( 73) ACACCCATACCCC 1 chrVIII:562300-562581 ( 76) ACACCCACACACC 1 chrVII:371204-371456 ( 75) GCACCCATGCACC 1 chrV:6138-6551 ( 55) ACACCCACACACC 1 chrIV:28-339 ( 4) ACACCCACACACC 1 chrVI:95477-95851 ( 22) GCACCCACACACC 1 chrXIII:145873-146277 ( 59) ACATCCATACACC 1 chrII:89641-89998 ( 32) ACATCCATACACC 1 chrIV:525097-525339 ( 35) ACACCCATACACT 1 chrIV:538982-539210 ( 59) ACACCCACACCCC 1 chrIV:411221-411646 ( 52) ACACCCACACCCC 1 chrVIII:125889-126299 ( 58) GCATCCGTACACC 1 chrXII:921740-921952 ( 44) GCACCCGTGCCCC 1 chrIV:1355693-1356036 ( 25) ACACCCATACATT 1 chrXII:932088-932493 ( 27) ACATCCGTACATC 1 chrII:181325-181662 ( 52) GCACCCATACATT 1 chrX:545470-545660 ( 42) CCACCCATGCACC 1 chrV:85131-85450 ( 60) CCACCCATACCCC 1 chrIII:58744-59004 ( 47) ACATCCGTGCACC 1 chrI:81862-82286 ( 86) ACATCCGTGCACC 1 chrXVI:794428-794810 ( 86) ACACCCATACATA 1 chrXVI:279964-280219 ( 73) GCATCCGTGCACC 1 chrVII:1000317-1000594 ( 53) GCACCCAAACACC 1 chrVII:276839-277615 ( 50) AGACCCATACACC 1 chrXV:79778-80112 ( 53) ACACCCGTACATA 1 chrXII:922120-922570 ( 50) ACACCCGTACATA 1 chrXVI:731921-732324 ( 32) ACACCCATACCTT 1 chrXV:161087-161467 ( 19) AAACCCATACATC 1 chrX:391867-392106 ( 58) ACACCCAGACCTC 1 chrV:305175-306875 ( 10) ACACCCACACATT 1 chrXIII:731822-732589 ( 51) ACATCCGCACATC 1 chrXII:1028199-1028577 ( 60) TCACCCATGCACC 1 chrVII:254064-254567 ( 63) GAACCCATACATC 1 chrII:476856-477673 ( 20) GCACCCACACATT 1 chrVIII:175076-175335 ( 27) AGACCCATACATC 1 chrXII:1012119-1012304 ( 77) GAACCCATGCACC 1 chrV:396126-396578 ( 77) ACATCCGTACACT 1 chrXII:903365-903668 ( 56) GGACCCATGCACC 1 chrVIII:505811-506207 ( 42) GCATCCATACATT 1 chrIV:358097-358436 ( 33) CCACCCATACATT 1 chrXVI:378666-378997 ( 59) ACATCCGTACATT 1 chrXIV:495215-495603 ( 19) ACACCCAAACCTC 1 chrIV:1359227-1360025 ( 20) ACATCCGTACATT 1 chrXV:1028443-1029405 ( 33) GCATCCGTACATT 1 chrXI:382209-382472 ( 15) GCATCCGGACATC 1 chrII:44987-45340 ( 57) GCATCCGTACATT 1 chrXV:1025702-1026077 ( 37) ACACCCATTCATC 1 chrXVI:280644-282954 ( 17) ACACCCTTACACT 1 chrXIII:500635-501293 ( 62) ACATCCGTACATA 1 chrXV:505109-505494 ( 43) AAACCCATACACA 1 chrXV:901427-901688 ( 33) TCACCCGTACATT 1 chrXIV:444443-444794 ( 53) CCATCCGTACCTC 1 chrXII:781466-781875 ( 36) GCATCCGTGCATT 1 chrVII:648880-649400 ( 44) GAACCCATACATT 1 chrXVI:135480-135839 ( 17) AAATCCGTGCACC 1 chrXV:968084-968427 ( 64) ACGCCCACGCACC 1 chrXV:216257-216669 ( 46) GCACCCGCGCCTT 1 chrXII:48659-49109 ( 69) AGATCCGTACATC 1 chrXI:67793-68059 ( 37) AAATCCGTGCACC 1 chrVII:856749-856970 ( 55) CCGCCCATACACC 1 chrV:270354-270693 ( 14) TCACCCATACATA 1 chrVIII:36021-36514 ( 37) ACACCCAAACATA 1 chrVII:788341-788735 ( 41) ACATCCGTGCATA 1 chrVIII:290659-292816 ( 72) CCATCCATACATT 1 chrXVI:699943-700673 ( 2) ACACCCAAGCACA 1 chrXVI:520147-520529 ( 76) CCACCCAGGCCTC 1 chrIII:68369-68625 ( 87) AAACCCATGCACA 1 chrIV:341243-341629 ( 57) CCATCCGTACATT 1 chrX:651206-651608 ( 64) ACACCCATATACC 1 chrVII:483232-483761 ( 5) AAACCCATACACG 1 chrX:90071-90427 ( 62) TCACCCATACATG 1 chrIV:321595-321986 ( 59) ACCTCCGTACACC 1 chrXII:282475-282882 ( 29) ACACCTGTACATC 1 chrXI:518901-519194 ( 32) AGATCCAGGCACC 1 chrX:617751-618274 ( 28) GAACCCTTGCATC 1 chrXV:978810-979159 ( 4) GAACCCATTCATC 1 chrXV:673516-674109 ( 65) AAAGCCGTACACC 1 chrIV:1492467-1493095 ( 29) TCATCCATGCACA 1 chrII:167609-168454 ( 54) AAACCCAGACATA 1 chrXIV:229443-230987 ( 76) ACAGCCATACCTT 1 chrVII:228490-228842 ( 13) AAACCCAAACATT 1 chrIX:99642-100045 ( 35) GCATCGGTACACC 1 chrIV:1013685-1013952 ( 75) GCACCCAGAGCCC 1 chrXIII:552541-553193 ( 43) GCACCCTTACCAC 1 chrIV:306664-307247 ( 52) GCACCCTTACCAC 1 chrIX:131809-132114 ( 51) GCATCCTGACCTC 1 chrIX:1-221 ( 5) ACACCCACACCAA 1 chrII:813000-813183 ( 87) ACACCCTAACACA 1 chrXI:99743-100007 ( 25) GCACCCACGGCTC 1 chrVII:919835-920238 ( 86) AAACCCAAACATA 1 chrIX:254251-254574 ( 46) GCACCCAGACCAT 1 chrXV:980478-981455 ( 56) ACATCCACTCATT 1 chrVIII:296788-297246 ( 68) TGACCCATACCCA 1 chrXII:424209-424441 ( 33) ACACACGTACATT 1 chrVII:479202-482983 ( 21) GGATCCATACATG 1 chrII:165056-165443 ( 58) TAGCCCATACACC 1 chrXVI:76171-76728 ( 74) GCAACCAGACCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACCCATACAYC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 13 n= 50512 bayes= 9.46445 E= 2.3e-098 83 -121 65 -219 -100 208 -140 -1330 160 -421 -262 -1330 -500 186 -321 -5 -500 244 -1330 -1330 -1330 242 -421 -500 100 -1330 75 -242 -219 -12 -104 109 125 -1330 25 -341 -1330 241 -321 -500 132 18 -1330 -1330 -300 135 -1330 64 -100 162 -262 -36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACCCATACAYC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 13 nsites= 101 E= 2.3e-098 0.564356 0.079208 0.287129 0.069307 0.158416 0.772277 0.069307 0.000000 0.960396 0.009901 0.029703 0.000000 0.009901 0.663366 0.019802 0.306931 0.009901 0.990099 0.000000 0.000000 0.000000 0.980198 0.009901 0.009901 0.633663 0.000000 0.306931 0.059406 0.069307 0.168317 0.089109 0.673267 0.752475 0.000000 0.217822 0.029703 0.000000 0.970297 0.019802 0.009901 0.792079 0.207921 0.000000 0.000000 0.039604 0.465347 0.000000 0.495050 0.158416 0.564356 0.029703 0.247525 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCACCCATACAYC MEME-3 regular expression -------------------------------------------------------------------------------- [AG]CA[CT]CC[AG]T[AG]C[AC][TC][CT] -------------------------------------------------------------------------------- Time 893.91 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:4-1233 5.11e-01 100 chrI:81862-82286 1.77e-04 85_[-3(5.17e-07)]_2 chrI:138903-139366 1.37e-01 100 chrI:141641-141882 9.58e-01 100 chrI:142107-143670 3.22e-01 100 chrI:166053-166729 7.85e-01 100 chrI:180952-181476 3.00e-02 51_[-1(2.97e-05)]_19 chrI:182347-182783 3.82e-13 15_[+1(5.40e-09)]_10_[+2(8.30e-12)]_\ 16 chrI:229241-230193 4.08e-01 100 chrII:9372-9871 3.83e-12 16_[-2(1.86e-10)]_11_[-1(1.39e-08)]_\ 14 chrII:36181-36569 6.80e-01 100 chrII:44987-45340 2.81e-03 56_[+3(2.32e-06)]_5_[-3(5.89e-06)]_\ 13 chrII:60265-61262 3.75e-01 100 chrII:87959-88579 9.97e-01 100 chrII:89641-89998 8.13e-04 11_[-3(3.16e-06)]_7_[-3(1.27e-07)]_\ 56 chrII:159808-160031 2.46e-01 100 chrII:165056-165443 4.50e-03 33_[+3(8.66e-05)]_11_[+3(4.47e-05)]_\ 30 chrII:167609-168454 5.56e-03 53_[+3(1.83e-05)]_34 chrII:181325-181662 4.01e-04 51_[+3(3.62e-07)]_36 chrII:197190-197874 9.47e-17 16_[-2(7.21e-12)]_1_[-1(1.35e-12)]_\ 24 chrII:226848-227400 3.82e-13 4_[-2(8.30e-12)]_10_[-1(5.40e-09)]_\ 27 chrII:266185-266715 5.56e-07 11_[-1(4.66e-11)]_59 chrII:326567-327209 4.92e-01 100 chrII:332236-333444 2.48e-01 100 chrII:347407-347933 2.61e-05 27_[-1(1.39e-08)]_43 chrII:350551-351263 1.99e-09 2_[-1(9.46e-13)]_68 chrII:405124-406352 7.04e-01 100 chrII:414045-415922 9.89e-01 100 chrII:476856-477673 2.08e-03 [+3(5.13e-05)]_6_[+3(1.02e-06)]_68 chrII:555543-558486 4.61e-01 100 chrII:592346-593291 1.41e-01 100 chrII:604070-607106 7.05e-01 100 chrII:642919-643242 8.68e-01 100 chrII:644984-645463 4.19e-08 26_[-1(2.68e-11)]_44 chrII:680433-682168 3.98e-01 100 chrII:813000-813183 6.27e-03 86_[-3(2.69e-05)]_1 chrIII:1-1739 2.54e-01 100 chrIII:11073-11503 9.70e-01 100 chrIII:28274-31191 6.89e-01 100 chrIII:58744-59004 2.76e-03 46_[+3(5.17e-07)]_41 chrIII:68369-68625 4.67e-03 86_[-3(7.15e-06)]_1 chrIII:82368-82764 5.93e-01 100 chrIII:123412-123817 7.19e-11 21_[+1(2.29e-14)]_49 chrIII:127542-127852 6.23e-01 100 chrIII:142623-143426 5.86e-01 100 chrIII:162082-163892 5.93e-01 100 chrIII:168099-168549 4.10e-13 35_[+1(9.46e-13)]_[+2(6.85e-07)]_6 chrIII:177139-178748 4.42e-01 100 chrIII:227754-228216 2.06e-13 10_[-2(6.16e-13)]_29_[-1(3.79e-08)]_\ 2 chrIII:292277-293037 6.25e-01 100 chrIII:294634-296377 8.19e-17 32_[-2(2.16e-13)]_1_[-1(4.66e-11)]_\ 8 chrIII:315644-316619 1.48e-01 100 chrIV:28-339 8.08e-05 3_[+3(6.18e-08)]_84 chrIV:83095-83828 9.88e-01 100 chrIV:116779-118208 2.66e-03 100 chrIV:129923-131148 4.42e-01 100 chrIV:217123-218007 5.86e-01 100 chrIV:221025-222408 5.47e-01 100 chrIV:229258-230735 5.34e-01 100 chrIV:233890-234661 4.86e-01 100 chrIV:306664-307247 1.51e-02 51_[+3(2.49e-05)]_36 chrIV:308009-308900 8.58e-01 100 chrIV:321595-321986 2.79e-02 58_[+3(1.43e-05)]_13_[+3(3.12e-05)]_\ 3 chrIV:322845-323596 8.57e-01 100 chrIV:341243-341629 3.43e-03 40_[-3(5.85e-05)]_3_[-3(7.78e-06)]_\ 31 chrIV:358097-358436 8.94e-03 32_[-3(1.83e-06)]_55 chrIV:359162-359915 7.68e-01 100 chrIV:410218-410702 4.77e-08 2_[-1(1.51e-11)]_68 chrIV:411221-411646 2.27e-04 51_[+3(1.95e-07)]_15_[+3(1.98e-05)]_\ 8 chrIV:433930-435121 7.47e-01 100 chrIV:437477-438151 3.82e-13 11_[-2(8.30e-12)]_10_[-1(5.40e-09)]_\ 20 chrIV:488411-489091 2.61e-01 100 chrIV:490773-491273 5.38e-01 100 chrIV:519543-519964 6.28e-08 44_[-2(1.86e-10)]_27 chrIV:520212-521164 7.74e-01 100 chrIV:525097-525339 1.18e-03 34_[-3(1.69e-07)]_53 chrIV:538982-539210 2.00e-04 58_[+3(1.95e-07)]_29 chrIV:541188-541921 8.30e-01 100 chrIV:568576-569261 4.21e-07 46_[-1(4.83e-10)]_24 chrIV:579038-580912 1.00e+00 100 chrIV:619680-620256 1.18e-05 59_[+1(3.41e-09)]_11 chrIV:644906-645380 6.91e-10 68_[+1(9.46e-13)]_2 chrIV:667779-668254 6.00e-09 49_[+1(1.35e-12)]_21 chrIV:802449-803023 1.70e-09 53_[+1(9.46e-13)]_17 chrIV:835788-836258 2.40e-02 57_[-2(5.55e-05)]_14 chrIV:884150-884579 1.75e-05 50_[-2(1.32e-07)]_21 chrIV:946135-946641 3.20e-05 23_[-1(4.11e-09)]_47 chrIV:980738-981267 3.82e-13 30_[+1(5.40e-09)]_10_[+2(8.30e-12)]_\ 1 chrIV:992579-993040 8.28e-02 100 chrIV:1013685-1013952 7.28e-02 74_[+3(2.30e-05)]_13 chrIV:1016991-1017545 1.61e-03 27_[+2(1.90e-06)]_44 chrIV:1075308-1075936 5.35e-01 100 chrIV:1076111-1076280 9.13e-01 100 chrIV:1095033-1095751 2.92e-05 36_[+1(2.42e-08)]_34 chrIV:1150372-1151204 8.61e-01 100 chrIV:1175611-1176246 3.64e-01 100 chrIV:1201211-1202135 6.41e-01 100 chrIV:1236829-1238813 6.75e-02 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3.93e-01 100 chrXII:522155-522900 2.37e-01 100 chrXII:589069-589335 7.29e-01 100 chrXII:592347-593203 8.44e-01 100 chrXII:605149-605787 6.84e-01 100 chrXII:628173-628902 7.89e-01 100 chrXII:637077-640240 1.20e-02 100 chrXII:650366-651270 9.75e-01 100 chrXII:656672-657187 8.30e-08 63_[+1(1.51e-11)]_7 chrXII:673328-674523 8.68e-01 100 chrXII:687415-688593 9.35e-01 100 chrXII:708054-711226 9.63e-01 100 chrXII:711979-713610 9.88e-01 100 chrXII:731874-732266 6.08e-01 100 chrXII:734694-735173 6.46e-01 100 chrXII:781466-781875 1.25e-02 17_[-3(5.13e-05)]_5_[-3(4.38e-06)]_\ 52 chrXII:784183-784560 1.29e-04 36_[-2(5.38e-07)]_35 chrXII:793699-797383 8.53e-01 100 chrXII:805368-807132 8.17e-02 100 chrXII:817399-819803 6.14e-02 61_[-2(3.86e-05)]_10 chrXII:837701-839031 9.08e-01 100 chrXII:839185-839406 7.82e-01 100 chrXII:875238-875865 9.53e-01 100 chrXII:897669-899652 6.95e-01 100 chrXII:903365-903668 8.98e-04 55_[+3(1.62e-06)]_32 chrXII:921740-921952 2.57e-04 43_[-3(2.43e-07)]_44 chrXII:922120-922570 1.39e-03 23_[+3(2.32e-06)]_13_[+3(7.54e-07)]_\ 38 chrXII:924497-924832 1.43e-01 100 chrXII:932088-932493 2.22e-03 18_[-3(3.62e-07)]_3_[-3(3.62e-07)]_\ 12_[-3(3.95e-06)]_28 chrXII:962796-963495 7.05e-01 100 chrXII:975785-976272 8.45e-13 13_[+1(9.15e-09)]_1_[+2(2.76e-11)]_\ 27 chrXII:1012119-1012304 1.38e-06 76_[+3(1.31e-06)]_11 chrXII:1017679-1019381 8.36e-01 100 chrXII:1028199-1028577 1.85e-03 59_[+3(1.02e-06)]_2_[-3(2.49e-05)]_\ 13 chrXII:1051796-1052343 1.55e-08 60_[+1(1.35e-12)]_10 chrXII:1064836-1065346 8.66e-05 10_[-3(6.18e-08)]_13_[-3(1.83e-05)]_\ 2_[-3(6.18e-08)]_13_[-3(2.05e-06)]_10 chrXIII:5337-5738 3.01e-05 55_[+3(6.18e-08)]_6_[+3(6.18e-08)]_\ [+3(6.18e-08)] chrXIII:91586-92070 1.51e-01 100 chrXIII:123857-124869 4.83e-01 100 chrXIII:131507-132168 4.21e-07 46_[+1(4.83e-10)]_24 chrXIII:145873-146277 4.33e-06 58_[+3(1.27e-07)]_29 chrXIII:162953-164349 9.62e-01 100 chrXIII:168548-169038 2.04e-01 100 chrXIII:183749-184181 1.28e-01 100 chrXIII:195753-196410 1.02e-07 45_[+1(3.43e-10)]_25 chrXIII:224056-224738 3.05e-01 100 chrXIII:225314-226666 9.80e-01 100 chrXIII:253358-253618 5.76e-01 100 chrXIII:258980-259590 8.96e-01 100 chrXIII:267881-268984 5.79e-01 100 chrXIII:290341-291198 9.06e-01 100 chrXIII:296750-299546 9.10e-01 100 chrXIII:302824-303337 8.86e-01 100 chrXIII:320957-321339 3.59e-08 57_[+1(1.51e-11)]_13 chrXIII:352079-352439 2.94e-01 100 chrXIII:362880-363322 1.78e-07 16_[-2(1.54e-06)]_[-1(3.52e-08)]_25 chrXIII:371820-372022 8.89e-01 100 chrXIII:372203-372759 2.24e-12 22_[+1(8.35e-10)]_1_[+2(4.40e-10)]_\ 18 chrXIII:378866-379829 4.94e-06 14_[+1(8.35e-10)]_56 chrXIII:420302-420919 2.24e-12 36_[+1(8.35e-10)]_1_[+2(4.40e-10)]_\ 4 chrXIII:463214-463907 4.07e-02 47_[-2(3.41e-05)]_24 chrXIII:480359-480895 1.90e-07 52_[+1(7.91e-11)]_18 chrXIII:499053-499502 7.05e-01 100 chrXIII:499672-500455 7.98e-01 100 chrXIII:500635-501293 5.01e-04 61_[+3(3.16e-06)]_26 chrXIII:504670-505258 3.00e-02 55_[-1(2.97e-05)]_15 chrXIII:550878-551808 6.67e-01 100 chrXIII:552541-553193 4.61e-03 42_[-3(2.49e-05)]_45 chrXIII:572592-573510 8.64e-01 100 chrXIII:586399-586897 4.53e-06 46_[+1(8.35e-10)]_24 chrXIII:650605-651646 9.69e-01 100 chrXIII:652047-652825 1.26e-01 100 chrXIII:731822-732589 3.70e-03 50_[+3(1.02e-06)]_3_[-3(4.38e-06)]_\ 21 chrXIII:747753-749290 9.24e-01 100 chrXIII:754394-754979 2.08e-01 100 chrXIII:761786-763286 9.96e-01 100 chrXIII:767890-768677 9.37e-01 100 chrXIII:807979-808540 9.34e-08 45_[+1(1.49e-10)]_25 chrXIII:837237-838424 7.36e-01 100 chrXIII:861186-861409 3.51e-02 100 chrXIII:872646-872942 9.55e-03 100 chrXIII:923092-924377 2.00e-01 100 chrXIV:6486-7172 6.90e-02 100 chrXIV:63122-64792 2.53e-01 100 chrXIV:88901-90102 4.30e-01 100 chrXIV:96052-96558 1.55e-04 24_[+2(1.67e-06)]_47 chrXIV:102490-103196 9.21e-01 100 chrXIV:104590-105124 8.19e-17 1_[-2(2.16e-13)]_1_[-1(4.66e-11)]_\ 39 chrXIV:229443-230987 6.00e-03 75_[+3(2.15e-05)]_12 chrXIV:241252-241725 5.47e-01 100 chrXIV:302332-303687 6.36e-01 100 chrXIV:330557-331113 6.76e-01 100 chrXIV:351928-352866 1.54e-01 100 chrXIV:374718-375114 1.36e-10 6_[-2(2.07e-08)]_19_[-1(1.27e-09)]_\ 16 chrXIV:442817-443728 8.97e-01 100 chrXIV:444443-444794 9.98e-03 36_[-3(1.43e-05)]_3_[-3(4.38e-06)]_\ 35 chrXIV:495215-495603 1.07e-04 18_[-3(2.05e-06)]_4_[-3(2.91e-05)]_\ 52 chrXIV:499309-499731 5.83e-01 100 chrXIV:499992-502014 9.73e-01 100 chrXIV:546951-547373 1.74e-08 45_[-1(3.43e-10)]_25 chrXIV:560184-560326 6.30e-01 100 chrXIV:560499-561063 5.70e-09 1_[+2(2.16e-13)]_70 chrXIV:567880-568581 2.47e-02 100 chrXIV:569694-570153 9.47e-17 2_[+1(1.35e-12)]_1_[+2(7.21e-12)]_\ 38 chrXIV:585357-586615 9.99e-01 100 chrXIV:602081-602583 9.47e-17 34_[-2(7.21e-12)]_1_[-1(1.35e-12)]_\ 6 chrXIV:631688-632168 1.68e-01 100 chrXIV:632400-632925 6.33e-05 21_[-1(9.15e-09)]_49 chrXIV:716002-716622 7.35e-01 100 chrXIV:725913-726423 3.83e-12 24_[+1(1.39e-08)]_11_[+2(1.86e-10)]_\ 6 chrXIV:758417-759956 8.33e-01 100 chrXIV:783632-784324 5.24e-01 100 chrXV:3-1015 3.48e-01 100 chrXV:79778-80112 2.36e-03 30_[-3(2.49e-05)]_9_[-3(7.54e-07)]_\ 35 chrXV:92085-94820 5.88e-02 100 chrXV:109570-111297 5.95e-01 100 chrXV:113575-114028 2.41e-09 54_[-2(2.16e-13)]_17 chrXV:161087-161467 2.44e-03 18_[-3(8.85e-07)]_69 chrXV:167810-168439 9.80e-01 100 chrXV:216257-216669 4.90e-03 37_[+3(5.39e-06)]_11_[+3(1.56e-05)]_\ 26 chrXV:226419-226944 1.53e-01 100 chrXV:228037-228606 1.45e-07 64_[-2(2.76e-11)]_7 chrXV:253451-254132 5.80e-01 100 chrXV:274484-275030 9.79e-05 27_[-1(1.19e-07)]_43 chrXV:281679-282492 6.12e-01 100 chrXV:287734-288382 5.08e-01 100 chrXV:300804-301403 1.37e-01 100 chrXV:339926-340634 3.86e-01 100 chrXV:353774-354314 2.88e-07 55_[+1(4.66e-11)]_15 chrXV:438434-438983 1.40e-06 41_[-1(5.91e-09)]_29 chrXV:464223-464730 1.09e-01 100 chrXV:487204-487702 8.45e-13 40_[-2(2.76e-11)]_1_[-1(9.15e-09)] chrXV:505109-505494 5.09e-03 42_[+3(3.95e-06)]_12_[+3(5.89e-06)]_\ 20 chrXV:505865-506794 7.99e-01 100 chrXV:571440-572209 8.77e-01 100 chrXV:594096-594646 8.57e-10 41_[+1(4.51e-09)]_[+2(8.06e-06)] chrXV:624047-624684 2.86e-01 100 chrXV:663486-664257 1.16e-06 30_[+2(4.40e-10)]_41 chrXV:673516-674109 1.21e-02 64_[-3(1.83e-05)]_23 chrXV:677927-679213 9.89e-01 100 chrXV:709992-710724 4.31e-01 100 chrXV:779710-780924 9.09e-01 100 chrXV:797012-797242 1.01e-01 100 chrXV:853999-854452 1.36e-14 20_[+1(1.35e-12)]_1_[+2(1.08e-09)]_\ 20 chrXV:866575-867185 1.09e-01 100 chrXV:901427-901688 3.14e-03 32_[-3(4.38e-06)]_55 chrXV:925189-925423 1.56e-01 100 chrXV:968084-968427 6.49e-04 39_[-3(6.27e-05)]_11_[-3(5.39e-06)]_\ 24 chrXV:976178-976689 1.85e-01 100 chrXV:978810-979159 7.72e-04 3_[-3(1.83e-05)]_21_[-2(2.56e-05)]_\ 34 chrXV:980478-981455 1.28e-01 55_[-3(4.16e-05)]_32 chrXV:1003748-1004953 8.29e-01 100 chrXV:1025702-1026077 4.33e-03 36_[+3(2.61e-06)]_51 chrXV:1028443-1029405 8.97e-03 32_[-3(2.32e-06)]_55 chrXV:1091136-1091291 5.34e-01 100 chrXVI:55546-56509 8.04e-01 100 chrXVI:76171-76728 1.49e-02 73_[+3(5.13e-05)]_14 chrXVI:135480-135839 1.50e-02 16_[-3(5.39e-06)]_71 chrXVI:172819-174084 8.93e-01 100 chrXVI:188309-188933 8.19e-02 100 chrXVI:209941-210508 8.63e-11 26_[+1(2.68e-11)]_[+2(1.04e-06)]_15 chrXVI:244057-244246 2.49e-04 87_[+3(5.17e-07)] chrXVI:279964-280219 3.32e-04 72_[+3(5.81e-07)]_15 chrXVI:280644-282954 4.79e-03 [+3(8.54e-06)]_3_[+3(3.16e-06)]_71 chrXVI:302545-302973 9.92e-01 100 chrXVI:338645-339199 5.88e-01 100 chrXVI:378666-378997 5.15e-03 33_[-3(4.38e-06)]_12_[-3(2.05e-06)]_\ 29 chrXVI:404587-405803 9.55e-01 100 chrXVI:406212-407354 8.08e-01 100 chrXVI:435609-436205 4.01e-04 44_[+1(7.10e-08)]_26 chrXVI:520147-520529 1.89e-03 44_[-3(1.43e-05)]_18_[+3(7.15e-06)]_\ 12 chrXVI:559864-560509 1.61e-05 70_[+1(5.91e-09)] chrXVI:571621-572862 8.55e-01 100 chrXVI:581596-582392 9.53e-02 100 chrXVI:622225-622824 1.52e-01 100 chrXVI:627249-627662 8.37e-01 100 chrXVI:653827-654717 7.52e-01 100 chrXVI:689292-689901 9.94e-15 22_[-2(2.52e-14)]_10_[-1(3.79e-08)]_\ 9 chrXVI:699943-700673 5.65e-03 1_[+3(7.15e-06)]_86 chrXVI:718488-719404 8.60e-01 100 chrXVI:731921-732324 4.48e-04 31_[+3(8.85e-07)]_56 chrXVI:743886-744592 2.20e-01 100 chrXVI:768948-769478 4.69e-06 52_[+1(5.91e-09)]_18 chrXVI:775626-776263 8.90e-01 100 chrXVI:776406-776725 8.53e-01 100 chrXVI:794428-794810 3.71e-03 67_[+3(4.38e-06)]_5_[+3(5.81e-07)]_\ 2 chrXVI:810437-810886 1.80e-07 69_[-2(2.76e-11)]_2 chrXVI:819274-820023 9.53e-01 100 chrXVI:856757-857176 8.30e-08 19_[-1(1.51e-11)]_51 chrXVI:859845-860596 7.57e-01 100 chrXVI:866471-866974 6.38e-01 100 chrXVI:879968-880553 9.52e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************