Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/AWRI1631--ZAP1.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.014469
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/AWRI1631--ZAP1.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.055787
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/AWRI1631--ZAP1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.070178
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.011287
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/AWRI1631--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/background
Finished invoke:
  name: bg  status: 0  time: 0.01158
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 870.605535
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 25.899326
Invoking:
  centrimo -seqlen 522 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/AWRI1631--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.233987
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.548055
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/background -primary RAGGTCCBSGGTTCGATYCCSVGHKKGRG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/AWRI1631--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.570195
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/background -primary GBBYARTKGKTAKMRCKYHMSVYTNBBAH /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/AWRI1631--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.514754
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/background -primary ARTCTKRYGCCTTAAMCMACTHGGCCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/AWRI1631--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.351045
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/background -primary AAAAADAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/AWRI1631--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.471782
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/background -primary ACCACTM /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/AWRI1631--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.29588
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/background -primary ACCAACTK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/AWRI1631--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.265494
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/background -primary GRAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/AWRI1631--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.456908
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/background -primary ACYCCGAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/AWRI1631--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.421555
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/background --motif RAGGTCCBSGGTTCGATYCCSVGHKKGRG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/AWRI1631--ZAP1.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.308767
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/background --motif GBBYARTKGKTAKMRCKYHMSVYTNBBAH /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/AWRI1631--ZAP1.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.324296
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/background --motif ARTCTKRYGCCTTAAMCMACTHGGCCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/AWRI1631--ZAP1.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.302673
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/background --motif AAAAADAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/AWRI1631--ZAP1.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.234023
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/background --motif ACCACTM /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/AWRI1631--ZAP1.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.194203
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/background --motif ACCAACTK /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/AWRI1631--ZAP1.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.187983
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/background --motif GRAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/AWRI1631--ZAP1.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.175574
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/background --motif ACYCCGAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/AWRI1631--ZAP1.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.188466
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.163845
Done