******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71844-73678 1.0000 100 chrI:81832-82330 1.0000 100 chrI:138860-139368 1.0000 100 chrI:142138-143572 1.0000 100 chrI:166166-166631 1.0000 100 chrI:180946-181505 1.0000 100 chrI:182318-183175 1.0000 100 chrII:6390-6560 1.0000 100 chrII:9355-10004 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chrXV:925220-925407 1.0000 100 chrXV:968129-968443 1.0000 100 chrXV:976267-976731 1.0000 100 chrXV:978783-979151 1.0000 100 chrXV:979710-981104 1.0000 100 chrXV:1003910-1004985 1.0000 100 chrXV:1025720-1026076 1.0000 100 chrXV:1027803-1029089 1.0000 100 chrXV:1070852-1071202 1.0000 100 chrXVI:55842-56433 1.0000 100 chrXVI:75401-76780 1.0000 100 chrXVI:135016-135845 1.0000 100 chrXVI:172846-174099 1.0000 100 chrXVI:188535-188941 1.0000 100 chrXVI:209976-210473 1.0000 100 chrXVI:279911-280226 1.0000 100 chrXVI:280576-281914 1.0000 100 chrXVI:282068-282983 1.0000 100 chrXVI:302637-304471 1.0000 100 chrXVI:304765-304933 1.0000 100 chrXVI:338751-339125 1.0000 100 chrXVI:340539-340756 1.0000 100 chrXVI:377914-378472 1.0000 100 chrXVI:378641-379006 1.0000 100 chrXVI:404553-408277 1.0000 100 chrXVI:425153-425486 1.0000 100 chrXVI:435622-436224 1.0000 100 chrXVI:520011-520698 1.0000 100 chrXVI:559842-560298 1.0000 100 chrXVI:572044-572597 1.0000 100 chrXVI:575242-575403 1.0000 100 chrXVI:581860-582450 1.0000 100 chrXVI:622279-622849 1.0000 100 chrXVI:645446-645738 1.0000 100 chrXVI:689361-689864 1.0000 100 chrXVI:692763-695010 1.0000 100 chrXVI:699814-700639 1.0000 100 chrXVI:701318-701462 1.0000 100 chrXVI:701874-702324 1.0000 100 chrXVI:718406-719527 1.0000 100 chrXVI:731910-732329 1.0000 100 chrXVI:744068-744602 1.0000 100 chrXVI:768939-769480 1.0000 100 chrXVI:775632-776078 1.0000 100 chrXVI:794457-794839 1.0000 100 chrXVI:810570-811196 1.0000 100 chrXVI:819296-819994 1.0000 100 chrXVI:821621-822183 1.0000 100 chrXVI:856724-857144 1.0000 100 chrXVI:860107-860703 1.0000 100 chrXVI:879648-880579 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 567 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 56700 N= 567 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.300 C 0.200 G 0.200 T 0.300 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--ZAP1/background): A 0.312 C 0.188 G 0.188 T 0.312 ******************************************************************************** ******************************************************************************** MOTIF RAGGTCCBSGGTTCGATYCCSVGHKKGRG MEME-1 width = 29 sites = 104 llr = 1927 E-value = 4.4e-407 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAGGTCCBSGGTTCGATYCCSVGHKKGRG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 35232:2:12::::2a2::::2:312131 pos.-specific C 122118543::::a::24a7532412222 probability G 53661:2357a:::8:2:::345:44545 matrix T 1:::62:21::aa:::46:21:2333212 bits 2.4 * * 2.2 * * * 1.9 * * * 1.7 **** * * Relative 1.4 * ****** * Entropy 1.2 * ******* ** (26.7 bits) 1.0 * * ******* *** 0.7 ** * ******** ***** 0.5 **** *********** ****** * * 0.2 **************** ************ 0.0 ----------------------------- Multilevel GAGGTCCCGGGTTCGATTCCCGGCGGGGG consensus AGCAA AGCA A AC TGCTTTT AT sequence GT ACA CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGTCCBSGGTTCGATYCCSVGHKKGRG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIV:631546-632144 - 53 1.50e-14 TAGGGTGCGG GAGGTCCCGGGTTCGAGTCCCGGCTCGCC CCCATTGATT chrIII:123394-123803 - 31 1.50e-14 TAGGGTGCGG GAGGTCCCGGGTTCGAGTCCCGGCTCGCC CCACATTGTT chrIX:197328-197945 + 47 1.27e-12 TTCTCACCGT GGAGACCGGGGTTCGACTCCCCGCTTCGG AGTTATTTTT chrIV:1016972-1017517 - 15 1.27e-12 TTCTCACCGT GGAGACCGGGGTTCGACTCCCCGCTTCGG AGTTTCTTTT chrIV:1256798-1257308 - 7 2.15e-12 TTCCCAAGCA TGGGGCCCGGGTTCGATTCCCGGCTTCCG CATTTT chrXVI:860107-860703 + 64 4.20e-12 TTGCCATCGT TGGGCCCCCGGTTCGATTCCGGGCTTGCG CAGATTTT chrXVI:572044-572597 + 39 4.20e-12 TTGCCATCGT TGGGCCCCCGGTTCGATTCCGGGCTTGCG CAATTTTTCC chrXV:281925-282558 + 13 4.20e-12 TTGCCATCGT TGGGCCCCCGGTTCGATTCCGGGCTTGCG CATTTCTTTT chrXIII:183789-183974 - 69 4.20e-12 CGT TGGGCCCCCGGTTCGATTCCGGGCTTGCG CATATTTTTT chrX:531581-532248 + 4 4.20e-12 CGT TGGGCCCCCGGTTCGATTCCGGGCTTGCG CAGTTTCTTT chrXV:594110-594679 - 12 4.95e-12 TTCCCAAGCA TGAGGCCCGGGTTCGATTCCCGGCTTGCG CATCTGTTTT chrXVI:209976-210473 - 20 1.09e-11 CTTTCACCGT GGAGACCGGGGTTCGACTCCCCGTATCGG AGTTTTCTTT chrXIII:290448-291224 + 56 1.09e-11 CTTTCACCGT GGAGACCGGGGTTCGACTCCCCGTATCGG AGTCTTCTTT chrX:115767-116193 - 11 1.09e-11 CTTTCACCGT GGAGACCGGGGTTCGACTCCCCGTATCGG AGTATTTTTT chrV:487080-487584 - 51 1.09e-11 CTTTCACCGT GGAGACCGGGGTTCGACTCCCCGTATCGG AGTATTCGTT chrV:176867-177466 + 24 1.09e-11 CTTTCACCGT GGAGACCGGGGTTCGACTCCCCGTATCGG AGTACTTTTT chrIX:370154-370736 + 63 1.09e-11 CTTTCACCGT GGAGACCGGGGTTCGACTCCCCGTATCGG AGTATGTTT chrII:644963-645459 + 47 1.09e-11 CTTTCACCGT GGAGACCGGGGTTCGACTCCCCGTATCGG AGTTATTTTT chrXV:464273-464803 + 33 3.58e-11 AAGCATGCGA GAGGCCCTGGGTTCAATTCCCAGCTCGCC CCTTTTATTT chrXV:300848-301492 + 48 3.58e-11 AAGCATGCGA GAGGCCCTGGGTTCAATTCCCAGCTCGCC CCCTTTTTTA chrXIII:195929-196309 - 1 3.58e-11 AAGCATGCGA GAGGCCCTGGGTTCAATTCCCAGCTCGCC chrXII:448510-448859 - 18 4.76e-11 TTTTGATCCG GACAACCCCGGTTCGAATCCGGGTAGGAC CTTCTTTTTT chrV:249787-250829 + 69 4.76e-11 TTTTGATCCG GACAACCCCGGTTCGAATCCGGGTAGGAC CTT chrIV:1075278-1075757 - 7 4.76e-11 TCACACGGCA AAGGTCCCGAGTTCGATCCTCGGTTGGAA CATTTG chrIV:645022-645387 - 1 4.76e-11 TTTTGATCCG GACAACCCCGGTTCGAATCCGGGTAGGAC chrIII:168081-168548 - 39 4.76e-11 TTTTGATCCG GACAACCCCGGTTCGAATCCGGGTAGGAC CTTTTTTTGA chrXIV:602103-602581 + 63 7.20e-11 TAATAACGCG GGGATCAGCGGTTCGATCCCGCTAGAGAC CATTCTTTT chrXIV:569624-570146 - 34 7.20e-11 TAATAACGCG GGGATCAGCGGTTCGATCCCGCTAGAGAC CATTCTTTTT chrV:442976-443389 - 72 7.20e-11 . GGGATCAGCGGTTCGATCCCGCTAGAGAC CATATTTTTT chrIX:183147-183714 - 62 7.20e-11 TAATAACGCG GGGATCAGCGGTTCGATCCCGCTAGAGAC CACTTATTTT chrII:197272-197851 + 26 7.20e-11 TAATAACGCG GGGATCAGCGGTTCGATCCCGCTAGAGAC CATTTTTTTG chrXII:214684-215070 - 58 9.43e-11 TTGCAAGGAA GAGGTCATCGGTTCGATTCCGGTTGCGTC CATTTATTTT chrV:311716-312302 - 66 9.43e-11 AAGGAA GAGGTCATCGGTTCGATTCCGGTTGCGTC CAATGAAATC chrXIII:807930-808558 - 54 1.40e-10 TTCTGATCCG AACAACCCCAGTTCGAATCCGGGTGGGAC CTTCCCTTCA chrXIII:480379-480829 - 69 1.60e-10 CAT AAGGTTAGGGGTTCGAGCCCCCTACAGGG CTTCTTTTTT chrX:414785-415251 + 40 1.60e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGG CTAATATTTT chrVII:185494-185937 - 51 1.60e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGG CTATCTTTTT chrIV:1201539-1202046 + 50 1.60e-10 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCCCTACAGGG CTAATAACAC chrIV:488465-489148 - 43 1.60e-10 TTACACGGCG AAGATCCCGAGTTCGAACCTCGGTTGGAT CAGAATCTTT chrII:326521-327069 - 49 1.60e-10 TTACACGGCG AAGATCCCGAGTTCGAACCTCGGTTGGAT CAAACTCTTT chrXIV:96037-96512 - 19 3.39e-10 CTTCCAAGGT GGGGACACGGGTTCGATTCTCGTACCGCT CAAATTTTTT chrVII:779385-779930 + 50 3.39e-10 CTTCCAAGGT GGGGACACGGGTTCGATTCTCGTACCGCT CAAGATTACT chrXI:162208-162772 - 49 4.87e-10 TTCTAATCAG AAGATTATGGGTTCGACCCCCATCGTGAG TGTTTTTTAC chrX:374179-374843 - 47 4.87e-10 TTCTAATCAG AAGATTATGGGTTCGACCCCCATCGTGAG TGCTTTGTTT chrVII:828458-828999 - 47 4.87e-10 TTCTAATCAG AAGATTATGGGTTCGACCCCCATCGTGAG TGCTTTTTTT chrII:405574-406276 + 44 4.87e-10 TTCTAATCAG AAGATTATGGGTTCGACCCCCATCGTGAG TGCTTTGTTT chrXVI:768939-769480 - 50 8.73e-10 AGGATACCGA AATGTCAGGGGTTCGAGCCCCCTATGAGG AGTTCTTTAC chrXV:438393-439080 + 22 8.73e-10 AGGATACCGA AATGTCAGGGGTTCGAGCCCCCTATGAGG AGTTCTTTAT chrXIII:586411-586904 - 31 8.73e-10 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAAT CATTTTTTTG chrXIII:420299-420868 - 57 8.73e-10 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAAT CATTTTTATC chrXI:578745-579391 + 12 8.73e-10 AGGATACCGA AATGTCAGGGGTTCGAGCCCCCTATGAGG AGTTCTTTAC chrXI:307896-308409 - 44 8.73e-10 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAAT CAATTTTTTT chrX:378188-378588 + 65 8.73e-10 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAAT CAATTTT chrVII:823339-823715 + 48 8.73e-10 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAAT CATTTTTTGA chrV:469238-469728 + 67 8.73e-10 TAACACGCAG AACGTCCCCAGTTCGATCCTGGGCGAAAT CATTT chrIV:884242-884673 + 56 8.73e-10 AAGCAACGCG ACCGTCGTGGGTTCAAACCCCACCTCGAG CACTTTCTCT chrXVI:856724-857144 + 60 1.37e-09 TAGCATGGGA GAGGTCTCCGGTTCGATTCCGGACTCGTC CATTTTAATT chrXIII:320998-321336 - 32 1.37e-09 TAGCATGGGA GAGGTCTCCGGTTCGATTCCGGACTCGTC CATTTTTTAT chrX:197160-197444 - 63 1.37e-09 AGCATGGGA GAGGTCTCCGGTTCGATTCCGGACTCGTC CAATTTCTTT chrVII:774142-774679 + 31 1.37e-09 TAGCATGGGA GAGGTCTCCGGTTCGATTCCGGACTCGTC CAAATTTTTT chrXV:976267-976731 + 14 1.53e-09 TCATAATCTG AAGGTCGAGAGTTCGAACCTCCCCTGGAG CAATATTTTT chrX:390790-391334 - 33 1.53e-09 TCATAATCTG AAGGTCGAGAGTTCGAACCTCCCCTGGAG CATATTTTTA chrIV:1175614-1176154 + 37 1.53e-09 TCATAATCTG AAGGTCGAGAGTTCGAACCTCCCCTGGAG CATTTTTGCC chrXIII:463328-463913 + 25 2.11e-09 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGG AGATTTTTTT chrXII:426915-427484 + 24 2.11e-09 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGG AGAATTTTTT chrXI:513094-513619 - 28 2.11e-09 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGG AGATTTTTTA chrX:204534-205027 + 46 2.11e-09 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGG AGATTTTTTT chrVII:544326-544881 - 26 2.11e-09 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGG AGATTTTTTT chrIX:336092-336635 - 38 2.11e-09 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCGCGG AGATTTTTTT chrXIV:374615-375232 + 56 2.35e-09 AAGTCATCTG GAGGTCCTGTGTTCGATCCACAGAGTTCG CAATTTGAAA chrIV:1095140-1095675 - 15 2.35e-09 AAGATATCTG GAGGTCCTGTGTTCGATCCACAGAGTTCG CATTTTTATT chrXI:490751-491248 + 61 3.56e-09 TACGAACCAG AAGATTCCAGGTTCAAGTCCTGGCGGGGA AGAATTTTTT chrV:492196-492562 - 25 3.56e-09 TACGAACCAG AAGATTCCAGGTTCAAGTCCTGGCGGGGA AGGATTATTT chrXV:353836-354306 - 22 4.36e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCGATTGGAAG CATTTTTTGT chrII:266196-266691 + 27 4.36e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCGATTGGAAG CATTTTTTTG chrXIV:632411-632956 + 9 5.88e-09 TTAATCGC AAGATCGTGAGTTCAACCCTCACTGGGGT CGTTTTTTTT chrXII:975756-976206 - 54 5.88e-09 TGTTAATCGC AAGATCGTGAGTTCAACCCTCACTGGGGT CGTTTATTTT chrVII:730949-731463 + 24 5.88e-09 TGTTAATCGC AAGATCGTGAGTTCAACCCTCACTGGGGT CGTTTTTTGC chrIII:127571-127915 + 66 5.88e-09 TGTTAATCGC AAGATCGTGAGTTCAACCCTCACTGGGGT CGTTAA chrIV:568694-569337 + 40 7.14e-09 TTGTCGCGTG CCAGATCGGGGTTCAATTCCCCGTCACGG AGAATTTTTT chrXVI:622279-622849 - 28 1.15e-08 AAGTTATCTG GAGGTCCTGTGTTCGATCCACAGAATTCG CATTTATTTT chrVIII:358259-358781 - 10 1.15e-08 AAGTTATCTG GAGGTCCTGTGTTCGATCCACAGAATTCG CATATTTTT chrVII:700273-701258 + 11 1.15e-08 TGATCTCTTC GGAGGCGCGGGTTCAAACCCCGCGGGTAT CAATATTTTT chrVII:440279-441155 - 51 1.15e-08 AAGTTATCTG GAGGTCCTGTGTTCGATCCACAGAATTCG CATAATAAGC chrXIII:837685-838251 + 68 1.81e-08 ACGAAATCTT GAGATCGGGCGTTCGACTCGCCCCCGGGA GATA chrIV:946146-946640 + 27 1.81e-08 ACGAAATCTT GAGATCGGGCGTTCGACTCGCCCCCGGGA GATTTTTTTA chrXIII:259007-259379 - 17 3.31e-08 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCTGCAGTTGT CGTTATTTTT chrX:523735-524324 - 35 3.31e-08 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCTGCAGTTGT CGTTATTTTT chrIV:1305373-1306060 + 16 3.31e-08 TTGGGCTTTG GCCCGCGCAGGTTCGAGTCCTGCAGTTGT CGTTATTTTT chrIV:980751-981224 - 39 3.31e-08 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCTGCAGTTGT CGTTTTTACC chrIV:437545-438124 + 39 3.31e-08 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCTGCAGTTGT CGTCATTTTT chrII:226966-227351 + 18 3.31e-08 TTTGGGCTTT GCCCGCGCAGGTTCGAGTCCTGCAGTTGT CGTTATTTTT chrXVI:744068-744602 + 40 3.60e-08 TTGTAATGCA AAGGTCGTTAGTTCAATTCTGACAGGTGG CAAAATTTTT chrXVI:435622-436224 - 22 5.43e-08 TGCAAATCTG TTGGTCCTTAGTTCGATCCTGAGTGCGAG CTTTCTTTTT chrII:642832-643252 - 17 5.43e-08 TGCAAATCTG TTGGTCCTTAGTTCGATCCTGAGTGCGAG CTTCTTTTTT chrXVI:689361-689864 + 54 8.70e-08 GTTGGGCTCT GCCCGCGCTGGTTCAAATCCTGCTGGTGT CGTATTATTT chrV:288139-288790 - 31 8.70e-08 GTTGGGCTCT GCCCGCGCTGGTTCAAATCCTGCTGGTGT CGTTTTTTTT chrIII:227771-228287 + 33 8.70e-08 CTTGGGCTCT GCCCGCGCTGGTTCAAATCCTGCTGGTGT CGTTTAATTT chrIII:149705-150227 + 45 1.58e-07 TCATAACCCT GATGTCCTCGGATCGAAACCGAGCGGCGC TATTAAATTT chrXI:312850-314030 - 13 1.95e-07 TTGTGGCCGA TGAAACCCTGGTTCGATTCTAGGAGATGG CATTTTATTT chrII:347377-347953 - 40 2.40e-07 ATATTACTGA AGGATGCGAGGTTCGAACTCGCGCGGACA ACCGTCCAAC chrII:9355-10004 - 6 2.40e-07 AAAATACTGA AGGATGCGAGGTTCGAACTCGCGCGGACA ACCGT chrXV:274455-275003 + 64 6.76e-07 ATTGGGTTTT ACCTGCGCAGGTTCGAATCCTGTCTGTGA CGCATTTC chrVII:371222-371514 - 61 1.77e-05 CTTGGCATTT TCCGGGTGCAGTTCAACCTCACTCGCGTG CGGCGGTGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGTCCBSGGTTCGATYCCSVGHKKGRG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631546-632144 1.5e-14 52_[-1]_19 chrIII:123394-123803 1.5e-14 30_[-1]_41 chrIX:197328-197945 1.3e-12 46_[+1]_25 chrIV:1016972-1017517 1.3e-12 14_[-1]_57 chrIV:1256798-1257308 2.1e-12 6_[-1]_65 chrXVI:860107-860703 4.2e-12 63_[+1]_8 chrXVI:572044-572597 4.2e-12 38_[+1]_33 chrXV:281925-282558 4.2e-12 12_[+1]_59 chrXIII:183789-183974 4.2e-12 68_[-1]_3 chrX:531581-532248 4.2e-12 3_[+1]_68 chrXV:594110-594679 4.9e-12 11_[-1]_60 chrXVI:209976-210473 1.1e-11 19_[-1]_52 chrXIII:290448-291224 1.1e-11 55_[+1]_16 chrX:115767-116193 1.1e-11 10_[-1]_61 chrV:487080-487584 1.1e-11 50_[-1]_21 chrV:176867-177466 1.1e-11 23_[+1]_48 chrIX:370154-370736 1.1e-11 62_[+1]_9 chrII:644963-645459 1.1e-11 46_[+1]_25 chrXV:464273-464803 3.6e-11 32_[+1]_39 chrXV:300848-301492 3.6e-11 47_[+1]_24 chrXIII:195929-196309 3.6e-11 [-1]_71 chrXII:448510-448859 4.8e-11 17_[-1]_54 chrV:249787-250829 4.8e-11 68_[+1]_3 chrIV:1075278-1075757 4.8e-11 6_[-1]_65 chrIV:645022-645387 4.8e-11 [-1]_71 chrIII:168081-168548 4.8e-11 38_[-1]_33 chrXIV:602103-602581 7.2e-11 62_[+1]_9 chrXIV:569624-570146 7.2e-11 33_[-1]_38 chrV:442976-443389 7.2e-11 71_[-1] chrIX:183147-183714 7.2e-11 61_[-1]_10 chrII:197272-197851 7.2e-11 25_[+1]_46 chrXII:214684-215070 9.4e-11 57_[-1]_14 chrV:311716-312302 9.4e-11 65_[-1]_6 chrXIII:807930-808558 1.4e-10 53_[-1]_18 chrXIII:480379-480829 1.6e-10 68_[-1]_3 chrX:414785-415251 1.6e-10 39_[+1]_32 chrVII:185494-185937 1.6e-10 50_[-1]_21 chrIV:1201539-1202046 1.6e-10 49_[+1]_22 chrIV:488465-489148 1.6e-10 42_[-1]_29 chrII:326521-327069 1.6e-10 48_[-1]_23 chrXIV:96037-96512 3.4e-10 18_[-1]_53 chrVII:779385-779930 3.4e-10 49_[+1]_22 chrXI:162208-162772 4.9e-10 48_[-1]_23 chrX:374179-374843 4.9e-10 46_[-1]_25 chrVII:828458-828999 4.9e-10 46_[-1]_25 chrII:405574-406276 4.9e-10 43_[+1]_28 chrXVI:768939-769480 8.7e-10 49_[-1]_22 chrXV:438393-439080 8.7e-10 21_[+1]_50 chrXIII:586411-586904 8.7e-10 30_[-1]_41 chrXIII:420299-420868 8.7e-10 56_[-1]_15 chrXI:578745-579391 8.7e-10 11_[+1]_60 chrXI:307896-308409 8.7e-10 43_[-1]_28 chrX:378188-378588 8.7e-10 64_[+1]_7 chrVII:823339-823715 8.7e-10 47_[+1]_24 chrV:469238-469728 8.7e-10 66_[+1]_5 chrIV:884242-884673 8.7e-10 55_[+1]_16 chrXVI:856724-857144 1.4e-09 59_[+1]_12 chrXIII:320998-321336 1.4e-09 31_[-1]_40 chrX:197160-197444 1.4e-09 62_[-1]_9 chrVII:774142-774679 1.4e-09 30_[+1]_41 chrXV:976267-976731 1.5e-09 13_[+1]_58 chrX:390790-391334 1.5e-09 32_[-1]_39 chrIV:1175614-1176154 1.5e-09 36_[+1]_35 chrXIII:463328-463913 2.1e-09 24_[+1]_47 chrXII:426915-427484 2.1e-09 23_[+1]_48 chrXI:513094-513619 2.1e-09 27_[-1]_44 chrX:204534-205027 2.1e-09 45_[+1]_26 chrVII:544326-544881 2.1e-09 25_[-1]_46 chrIX:336092-336635 2.1e-09 37_[-1]_34 chrXIV:374615-375232 2.3e-09 55_[+1]_16 chrIV:1095140-1095675 2.3e-09 14_[-1]_57 chrXI:490751-491248 3.6e-09 60_[+1]_11 chrV:492196-492562 3.6e-09 24_[-1]_47 chrXV:353836-354306 4.4e-09 21_[-1]_50 chrII:266196-266691 4.4e-09 26_[+1]_45 chrXIV:632411-632956 5.9e-09 8_[+1]_63 chrXII:975756-976206 5.9e-09 53_[-1]_18 chrVII:730949-731463 5.9e-09 23_[+1]_48 chrIII:127571-127915 5.9e-09 65_[+1]_6 chrIV:568694-569337 7.1e-09 39_[+1]_32 chrXVI:622279-622849 1.1e-08 27_[-1]_44 chrVIII:358259-358781 1.1e-08 9_[-1]_62 chrVII:700273-701258 1.1e-08 10_[+1]_61 chrVII:440279-441155 1.1e-08 50_[-1]_21 chrXIII:837685-838251 1.8e-08 67_[+1]_4 chrIV:946146-946640 1.8e-08 26_[+1]_45 chrXIII:259007-259379 3.3e-08 16_[-1]_55 chrX:523735-524324 3.3e-08 34_[-1]_37 chrIV:1305373-1306060 3.3e-08 15_[+1]_56 chrIV:980751-981224 3.3e-08 38_[-1]_33 chrIV:437545-438124 3.3e-08 38_[+1]_33 chrII:226966-227351 3.3e-08 17_[+1]_54 chrXVI:744068-744602 3.6e-08 39_[+1]_32 chrXVI:435622-436224 5.4e-08 21_[-1]_50 chrII:642832-643252 5.4e-08 16_[-1]_55 chrXVI:689361-689864 8.7e-08 53_[+1]_18 chrV:288139-288790 8.7e-08 30_[-1]_41 chrIII:227771-228287 8.7e-08 32_[+1]_39 chrIII:149705-150227 1.6e-07 44_[+1]_27 chrXI:312850-314030 2e-07 12_[-1]_59 chrII:347377-347953 2.4e-07 39_[-1]_32 chrII:9355-10004 2.4e-07 5_[-1]_66 chrXV:274455-275003 6.8e-07 63_[+1]_8 chrVII:371222-371514 1.8e-05 60_[-1]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGTCCBSGGTTCGATYCCSVGHKKGRG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAGGTCCBSGGTTCGATYCCSVGHKKGRG width=29 seqs=104 chrXIV:631546-632144 ( 53) GAGGTCCCGGGTTCGAGTCCCGGCTCGCC 1 chrIII:123394-123803 ( 31) GAGGTCCCGGGTTCGAGTCCCGGCTCGCC 1 chrIX:197328-197945 ( 47) GGAGACCGGGGTTCGACTCCCCGCTTCGG 1 chrIV:1016972-1017517 ( 15) GGAGACCGGGGTTCGACTCCCCGCTTCGG 1 chrIV:1256798-1257308 ( 7) TGGGGCCCGGGTTCGATTCCCGGCTTCCG 1 chrXVI:860107-860703 ( 64) TGGGCCCCCGGTTCGATTCCGGGCTTGCG 1 chrXVI:572044-572597 ( 39) TGGGCCCCCGGTTCGATTCCGGGCTTGCG 1 chrXV:281925-282558 ( 13) TGGGCCCCCGGTTCGATTCCGGGCTTGCG 1 chrXIII:183789-183974 ( 69) TGGGCCCCCGGTTCGATTCCGGGCTTGCG 1 chrX:531581-532248 ( 4) TGGGCCCCCGGTTCGATTCCGGGCTTGCG 1 chrXV:594110-594679 ( 12) TGAGGCCCGGGTTCGATTCCCGGCTTGCG 1 chrXVI:209976-210473 ( 20) GGAGACCGGGGTTCGACTCCCCGTATCGG 1 chrXIII:290448-291224 ( 56) GGAGACCGGGGTTCGACTCCCCGTATCGG 1 chrX:115767-116193 ( 11) GGAGACCGGGGTTCGACTCCCCGTATCGG 1 chrV:487080-487584 ( 51) GGAGACCGGGGTTCGACTCCCCGTATCGG 1 chrV:176867-177466 ( 24) GGAGACCGGGGTTCGACTCCCCGTATCGG 1 chrIX:370154-370736 ( 63) GGAGACCGGGGTTCGACTCCCCGTATCGG 1 chrII:644963-645459 ( 47) GGAGACCGGGGTTCGACTCCCCGTATCGG 1 chrXV:464273-464803 ( 33) GAGGCCCTGGGTTCAATTCCCAGCTCGCC 1 chrXV:300848-301492 ( 48) GAGGCCCTGGGTTCAATTCCCAGCTCGCC 1 chrXIII:195929-196309 ( 1) GAGGCCCTGGGTTCAATTCCCAGCTCGCC 1 chrXII:448510-448859 ( 18) GACAACCCCGGTTCGAATCCGGGTAGGAC 1 chrV:249787-250829 ( 69) GACAACCCCGGTTCGAATCCGGGTAGGAC 1 chrIV:1075278-1075757 ( 7) AAGGTCCCGAGTTCGATCCTCGGTTGGAA 1 chrIV:645022-645387 ( 1) GACAACCCCGGTTCGAATCCGGGTAGGAC 1 chrIII:168081-168548 ( 39) GACAACCCCGGTTCGAATCCGGGTAGGAC 1 chrXIV:602103-602581 ( 63) GGGATCAGCGGTTCGATCCCGCTAGAGAC 1 chrXIV:569624-570146 ( 34) GGGATCAGCGGTTCGATCCCGCTAGAGAC 1 chrV:442976-443389 ( 72) GGGATCAGCGGTTCGATCCCGCTAGAGAC 1 chrIX:183147-183714 ( 62) GGGATCAGCGGTTCGATCCCGCTAGAGAC 1 chrII:197272-197851 ( 26) GGGATCAGCGGTTCGATCCCGCTAGAGAC 1 chrXII:214684-215070 ( 58) GAGGTCATCGGTTCGATTCCGGTTGCGTC 1 chrV:311716-312302 ( 66) GAGGTCATCGGTTCGATTCCGGTTGCGTC 1 chrXIII:807930-808558 ( 54) AACAACCCCAGTTCGAATCCGGGTGGGAC 1 chrXIII:480379-480829 ( 69) AAGGTTAGGGGTTCGAGCCCCCTACAGGG 1 chrX:414785-415251 ( 40) AAGGTTAGGGGTTCGAGCCCCCTACAGGG 1 chrVII:185494-185937 ( 51) AAGGTTAGGGGTTCGAGCCCCCTACAGGG 1 chrIV:1201539-1202046 ( 50) AAGGTTAGGGGTTCGAGCCCCCTACAGGG 1 chrIV:488465-489148 ( 43) AAGATCCCGAGTTCGAACCTCGGTTGGAT 1 chrII:326521-327069 ( 49) AAGATCCCGAGTTCGAACCTCGGTTGGAT 1 chrXIV:96037-96512 ( 19) GGGGACACGGGTTCGATTCTCGTACCGCT 1 chrVII:779385-779930 ( 50) GGGGACACGGGTTCGATTCTCGTACCGCT 1 chrXI:162208-162772 ( 49) AAGATTATGGGTTCGACCCCCATCGTGAG 1 chrX:374179-374843 ( 47) AAGATTATGGGTTCGACCCCCATCGTGAG 1 chrVII:828458-828999 ( 47) AAGATTATGGGTTCGACCCCCATCGTGAG 1 chrII:405574-406276 ( 44) AAGATTATGGGTTCGACCCCCATCGTGAG 1 chrXVI:768939-769480 ( 50) AATGTCAGGGGTTCGAGCCCCCTATGAGG 1 chrXV:438393-439080 ( 22) AATGTCAGGGGTTCGAGCCCCCTATGAGG 1 chrXIII:586411-586904 ( 31) AACGTCCCCAGTTCGATCCTGGGCGAAAT 1 chrXIII:420299-420868 ( 57) AACGTCCCCAGTTCGATCCTGGGCGAAAT 1 chrXI:578745-579391 ( 12) AATGTCAGGGGTTCGAGCCCCCTATGAGG 1 chrXI:307896-308409 ( 44) AACGTCCCCAGTTCGATCCTGGGCGAAAT 1 chrX:378188-378588 ( 65) AACGTCCCCAGTTCGATCCTGGGCGAAAT 1 chrVII:823339-823715 ( 48) AACGTCCCCAGTTCGATCCTGGGCGAAAT 1 chrV:469238-469728 ( 67) AACGTCCCCAGTTCGATCCTGGGCGAAAT 1 chrIV:884242-884673 ( 56) ACCGTCGTGGGTTCAAACCCCACCTCGAG 1 chrXVI:856724-857144 ( 60) GAGGTCTCCGGTTCGATTCCGGACTCGTC 1 chrXIII:320998-321336 ( 32) GAGGTCTCCGGTTCGATTCCGGACTCGTC 1 chrX:197160-197444 ( 63) GAGGTCTCCGGTTCGATTCCGGACTCGTC 1 chrVII:774142-774679 ( 31) GAGGTCTCCGGTTCGATTCCGGACTCGTC 1 chrXV:976267-976731 ( 14) AAGGTCGAGAGTTCGAACCTCCCCTGGAG 1 chrX:390790-391334 ( 33) AAGGTCGAGAGTTCGAACCTCCCCTGGAG 1 chrIV:1175614-1176154 ( 37) AAGGTCGAGAGTTCGAACCTCCCCTGGAG 1 chrXIII:463328-463913 ( 25) CCAGATCGGGGTTCAATTCCCCGTCGCGG 1 chrXII:426915-427484 ( 24) CCAGATCGGGGTTCAATTCCCCGTCGCGG 1 chrXI:513094-513619 ( 28) CCAGATCGGGGTTCAATTCCCCGTCGCGG 1 chrX:204534-205027 ( 46) CCAGATCGGGGTTCAATTCCCCGTCGCGG 1 chrVII:544326-544881 ( 26) CCAGATCGGGGTTCAATTCCCCGTCGCGG 1 chrIX:336092-336635 ( 38) CCAGATCGGGGTTCAATTCCCCGTCGCGG 1 chrXIV:374615-375232 ( 56) GAGGTCCTGTGTTCGATCCACAGAGTTCG 1 chrIV:1095140-1095675 ( 15) GAGGTCCTGTGTTCGATCCACAGAGTTCG 1 chrXI:490751-491248 ( 61) AAGATTCCAGGTTCAAGTCCTGGCGGGGA 1 chrV:492196-492562 ( 25) AAGATTCCAGGTTCAAGTCCTGGCGGGGA 1 chrXV:353836-354306 ( 22) GAGATCATCGGTTCAAATCCGATTGGAAG 1 chrII:266196-266691 ( 27) GAGATCATCGGTTCAAATCCGATTGGAAG 1 chrXIV:632411-632956 ( 9) AAGATCGTGAGTTCAACCCTCACTGGGGT 1 chrXII:975756-976206 ( 54) AAGATCGTGAGTTCAACCCTCACTGGGGT 1 chrVII:730949-731463 ( 24) AAGATCGTGAGTTCAACCCTCACTGGGGT 1 chrIII:127571-127915 ( 66) AAGATCGTGAGTTCAACCCTCACTGGGGT 1 chrIV:568694-569337 ( 40) CCAGATCGGGGTTCAATTCCCCGTCACGG 1 chrXVI:622279-622849 ( 28) GAGGTCCTGTGTTCGATCCACAGAATTCG 1 chrVIII:358259-358781 ( 10) GAGGTCCTGTGTTCGATCCACAGAATTCG 1 chrVII:700273-701258 ( 11) GGAGGCGCGGGTTCAAACCCCGCGGGTAT 1 chrVII:440279-441155 ( 51) GAGGTCCTGTGTTCGATCCACAGAATTCG 1 chrXIII:837685-838251 ( 68) GAGATCGGGCGTTCGACTCGCCCCCGGGA 1 chrIV:946146-946640 ( 27) GAGATCGGGCGTTCGACTCGCCCCCGGGA 1 chrXIII:259007-259379 ( 17) GCCCGCGCAGGTTCGAGTCCTGCAGTTGT 1 chrX:523735-524324 ( 35) GCCCGCGCAGGTTCGAGTCCTGCAGTTGT 1 chrIV:1305373-1306060 ( 16) GCCCGCGCAGGTTCGAGTCCTGCAGTTGT 1 chrIV:980751-981224 ( 39) GCCCGCGCAGGTTCGAGTCCTGCAGTTGT 1 chrIV:437545-438124 ( 39) GCCCGCGCAGGTTCGAGTCCTGCAGTTGT 1 chrII:226966-227351 ( 18) GCCCGCGCAGGTTCGAGTCCTGCAGTTGT 1 chrXVI:744068-744602 ( 40) AAGGTCGTTAGTTCAATTCTGACAGGTGG 1 chrXVI:435622-436224 ( 22) TTGGTCCTTAGTTCGATCCTGAGTGCGAG 1 chrII:642832-643252 ( 17) TTGGTCCTTAGTTCGATCCTGAGTGCGAG 1 chrXVI:689361-689864 ( 54) GCCCGCGCTGGTTCAAATCCTGCTGGTGT 1 chrV:288139-288790 ( 31) GCCCGCGCTGGTTCAAATCCTGCTGGTGT 1 chrIII:227771-228287 ( 33) GCCCGCGCTGGTTCAAATCCTGCTGGTGT 1 chrIII:149705-150227 ( 45) GATGTCCTCGGATCGAAACCGAGCGGCGC 1 chrXI:312850-314030 ( 13) TGAAACCCTGGTTCGATTCTAGGAGATGG 1 chrII:347377-347953 ( 40) AGGATGCGAGGTTCGAACTCGCGCGGACA 1 chrII:9355-10004 ( 6) AGGATGCGAGGTTCGAACTCGCGCGGACA 1 chrXV:274455-275003 ( 64) ACCTGCGCAGGTTCGAATCCTGTCTGTGA 1 chrVII:371222-371514 ( 61) TCCGGGTGCAGTTCAACCTCACTCGCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGTCCBSGGTTCGATYCCSVGHKKGRG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 40824 bayes= 10.7313 E= 4.4e-407 11 -148 138 -156 79 -4 47 -402 -77 23 157 -302 -16 -112 173 -502 -44 -129 -48 84 -1334 210 -270 -93 -56 149 17 -270 -343 114 76 -38 -156 66 149 -221 -63 -329 196 -270 -1334 -1334 241 -1334 -502 -1334 -1334 167 -1334 -1334 -1334 168 -1334 241 -1334 -1334 -38 -1334 201 -1334 168 -1334 -1334 -1334 -63 3 -20 50 -502 117 -1334 86 -1334 237 -1334 -343 -270 194 -329 -56 -402 149 84 -143 -50 88 120 -1334 -302 10 149 -44 -27 107 -429 11 -121 -38 123 -16 -93 -20 100 -7 -132 -12 149 -85 -2 10 117 -221 -202 17 135 -44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGTCCBSGGTTCGATYCCSVGHKKGRG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 104 E= 4.4e-407 0.336538 0.067308 0.490385 0.105769 0.538462 0.182692 0.259615 0.019231 0.182692 0.221154 0.557692 0.038462 0.278846 0.086538 0.625000 0.009615 0.230769 0.076923 0.134615 0.557692 0.000000 0.807692 0.028846 0.163462 0.211538 0.528846 0.211538 0.048077 0.028846 0.413462 0.317308 0.240385 0.105769 0.298077 0.528846 0.067308 0.201923 0.019231 0.730769 0.048077 0.000000 0.000000 1.000000 0.000000 0.009615 0.000000 0.000000 0.990385 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.240385 0.000000 0.759615 0.000000 1.000000 0.000000 0.000000 0.000000 0.201923 0.192308 0.163462 0.442308 0.009615 0.423077 0.000000 0.567308 0.000000 0.971154 0.000000 0.028846 0.048077 0.721154 0.019231 0.211538 0.019231 0.528846 0.336538 0.115385 0.221154 0.346154 0.432692 0.000000 0.038462 0.201923 0.528846 0.230769 0.259615 0.394231 0.009615 0.336538 0.134615 0.144231 0.442308 0.278846 0.163462 0.163462 0.375000 0.298077 0.125000 0.173077 0.528846 0.173077 0.307692 0.201923 0.423077 0.067308 0.076923 0.211538 0.480769 0.230769 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGTCCBSGGTTCGATYCCSVGHKKGRG MEME-1 regular expression -------------------------------------------------------------------------------- [GA][AG][GC][GA][TA]C[CAG][CGT][GC][GA]GTTC[GA]A[TA][TC]C[CT][CG][GCA][GTC][CTA][GT][GT]G[GAC][GTC] -------------------------------------------------------------------------------- Time 312.69 secs. ******************************************************************************** ******************************************************************************** MOTIF GBBYARTKGKTAKMRCKYHMSVYTNBBAH MEME-2 width = 29 sites = 80 llr = 1254 E-value = 1.1e-191 ******************************************************************************** -------------------------------------------------------------------------------- Motif GBBYARTKGKTAKMRCKYHMSVYTNBBAH MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::7511::1a235:2124:3::21285 pos.-specific C :4331:11:11::5:81434435:234:3 probability G a341:525a5::525:511164::2222: matrix T :4361:64:48:3::23542::5a443:3 bits 2.4 * 2.2 * * 1.9 * * 1.7 * * * * Relative 1.4 * * * * * * Entropy 1.2 * * * * * * * (22.6 bits) 1.0 * * * * ** * ** * 0.7 * ** **** ** * ** * 0.5 ****************** **** * 0.2 ************************ **** 0.0 ----------------------------- Multilevel GTGTAATGGGTAGCGCGTTCGGCTTTCAA consensus CTC GGT T TAATTCCACAT CCTGT sequence GC A C GGG C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBBYARTKGKTAKMRCKYHMSVYTNBBAH MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrVII:794232-794592 + 64 1.61e-12 CGGGCACATG GCGCAGTTGGTAGCGCGCTTCCCTTGCAA GGAAGAGG chrXII:875182-875614 + 37 6.60e-12 ATCCTTGTTA GCTCAGTTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrVII:115314-115734 + 23 6.60e-12 ATCCTTGTTA GCTCAGTTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrXVI:856724-857144 + 27 1.03e-11 CGGGCGTGTG GCGTAGTCGGTAGCGCGCTCCCTTAGCAT GGGAGAGGTC chrXIII:320998-321336 - 65 1.03e-11 GCGTGTG GCGTAGTCGGTAGCGCGCTCCCTTAGCAT GGGAGAGGTC chrXII:656820-657201 - 9 1.03e-11 TGGGCGTGTG GCGTAGTCGGTAGCGCGCTCCCTTAGCAT GGGAGAGG chrXI:517799-518175 + 60 1.03e-11 TGGGCGTGTG GCGTAGTCGGTAGCGCGCTCCCTTAGCAT GGGAGAGGTC chrX:414785-415251 + 7 1.32e-10 TTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrV:435590-436033 - 26 1.32e-10 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrIX:300015-300608 - 2 1.32e-10 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA T chrIV:1201539-1202046 + 17 1.32e-10 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrIII:151114-151589 - 18 1.32e-10 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrXII:448510-448859 - 50 4.34e-10 CGGTCCTATA GTGTAGTGGTTATCACTTTCGGTTTTGAT CCGGACAACC chrV:249787-250829 + 37 4.34e-10 TGGTCCTATA GTGTAGTGGTTATCACTTTCGGTTTTGAT CCGGACAACC chrV:130859-131409 - 32 4.34e-10 AGGTTTTATA GTGTAGTGGTTATCACTTTCGGTTTTGAT CCGAACAACC chrIV:802551-803016 - 32 4.34e-10 CGGTCCTATA GTGTAGTGGTTATCACTTTCGGTTTTGAT CCGGACAACC chrIV:645022-645387 - 33 4.34e-10 CGGTCCTATA GTGTAGTGGTTATCACTTTCGGTTTTGAT CCGGACAACC chrIV:520742-521226 + 47 4.34e-10 GGGTCCTATA GTGTAGTGGTTATCACTTTCGGTTTTGAT CCGGACAACC chrIII:168081-168548 - 71 4.34e-10 A GTGTAGTGGTTATCACTTTCGGTTTTGAT CCGGACAACC chrII:350615-351053 + 52 4.34e-10 GGGTTTTATA GTGTAGTGGTTATCACTTTCGGTTTTGAT CCGGACAACC chrXV:110850-111204 - 19 1.96e-09 CGGGCGGTTA GTGTAGTGGTTATCATCCCACCCTTCCAA GGTGGGGACA chrXIV:96037-96512 - 51 1.96e-09 TGGGCGGTTA GTGTAGTGGTTATCATCCCACCCTTCCAA GGTGGGGACA chrVII:779385-779930 + 18 1.96e-09 CGGGCGGTTA GTGTAGTGGTTATCATCCCACCCTTCCAA GGTGGGGACA chrXVI:209976-210473 - 52 4.42e-09 GTCCGATATA GTGTAACGGCTATCACATCACGCTTTCAC CGTGGAGACC chrXIII:290448-291224 + 24 4.42e-09 ATCCGATATA GTGTAACGGCTATCACATCACGCTTTCAC CGTGGAGACC chrXI:140654-141508 - 21 4.42e-09 ATCCGATATA GTGTAACGGCTATCACATCACGCTTTCAC CGTGGAGACC chrX:115767-116193 - 43 4.42e-09 ATCCGATATA GTGTAACGGCTATCACATCACGCTTTCAC CGTGGAGACC chrIX:370154-370736 + 31 4.42e-09 ATCCGATATA GTGTAACGGCTATCACATCACGCTTTCAC CGTGGAGACC chrII:644963-645459 + 15 4.42e-09 ATCCGATATA GTGTAACGGCTATCACATCACGCTTTCAC CGTGGAGACC chrIX:197328-197945 + 15 7.34e-09 ATCCGATGTA GTGTAACGGCTATCACATCACGTTCTCAC CGTGGAGACC chrIV:1016972-1017517 - 47 7.34e-09 ATCCGATGTA GTGTAACGGCTATCACATCACGTTCTCAC CGTGGAGACC chrIV:1075278-1075757 - 40 1.33e-08 TGTTCCAATA GTGTAGCGGCTATCACGTTGCCTTCACAC GGCAAAGGTC chrXI:490751-491248 + 28 1.50e-08 GTTCCTCGTG GCCCAATGGTCACGGCGTCTGGCTACGAA CCAGAAGATT chrX:233701-234216 + 40 1.50e-08 GTTCCTCGTG GCCCAATGGTCACGGCGTCTGGCTACGAA CCAGGAGATT chrV:492196-492562 - 58 1.50e-08 ATTCCTCGTG GCCCAATGGTCACGGCGTCTGGCTACGAA CCAGAAGATT chrIV:1256798-1257308 - 39 1.50e-08 AGCGAAAGTG GTTCAGTGGTTAGAATTCATGCTTCCCAA GCATGGGGCC chrXIV:374615-375232 + 5 1.68e-08 CTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAACTTCGG chrVIII:358259-358781 - 62 1.68e-08 AGCGGATTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrIV:1095140-1095675 - 67 1.68e-08 ACTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTTG chrXV:594110-594679 - 44 2.10e-08 CGCGCAAGTG GTTCAGTGGTTAGAATTTATGCTTCCCAA GCATGAGGCC chrXV:353836-354306 - 55 3.22e-08 TGCTTCTATG GCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrVIII:115928-116399 - 29 3.22e-08 AGCTTCTATG GCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrIX:174694-175390 + 48 3.22e-08 AGCTTCTATG GCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrXVI:689361-689864 + 12 3.57e-08 GGGCACTATG GCCGAGTGGTTAAGGCGACAGACTTGAAA TCTGTTGGGC chrXI:302677-303254 + 11 5.89e-08 ATGAAGCGGT GGCTCAATGGTAGAGCTTTCGACTCCAAT TAAATCTTGG chrX:415737-416243 - 60 5.89e-08 TTGAAGCGGT GGCTCAATGGTAGAGCTTTCGACTCCAAT TAAATCTTGG chrVII:878541-879041 - 38 5.89e-08 ATGAAGCGGT GGCTCAATGGTAGAGCTTTCGACTCCAAT TAAATCTTGG chrVII:287161-287676 - 51 5.89e-08 ATGAAGCGGT GGCTCAATGGTAGAGCTTTCGACTCCAAT TAAATCTTGG chrXVI:435622-436224 - 55 6.49e-08 AAGCTCGTAT GGCGCAGTGGTAGCGCAGCAGATTGCAAA TCTGTTGGTC chrII:642832-643252 - 50 6.49e-08 AAGCTCGTAT GGCGCAGTGGTAGCGCAGCAGATTGCAAA TCTGTTGGTC chrX:517658-518113 - 13 7.14e-08 TAAGCGCCGT GGCGCAGTGGAAGCGCGCAGGGCTCATAA CCCTGATGTC chrV:99886-100356 + 70 7.14e-08 TAAGCGCCGT GGCGCAGTGGAAGCGCGCAGGGCTCATAA CC chrIII:149705-150227 + 12 7.14e-08 TGAGCGCCGT GGCGCAGTGGAAGCGCGCAGGGCTCATAA CCCTGATGTC chrXV:274455-275003 + 3 8.60e-08 TG GCCGAGTGGTTAAGGCGATGCCCTGCTAT TTCCTCAGAA chrXI:513094-513619 - 60 8.60e-08 TTCCGTGATA GTTTAATGGTCAGAATGGGCGCTTGTCGC GTGCCAGATC chrX:355182-355754 + 47 8.60e-08 TTCCGTGATA GTTTAATGGTCAGAATGGGCGCTTGTCGC GTGCCAGATC chrX:204534-205027 + 14 8.60e-08 ATCCGTGATA GTTTAATGGTCAGAATGGGCGCTTGTCGC GTGCCAGATC chrVII:544326-544881 - 58 8.60e-08 TTCCGTGATA GTTTAATGGTCAGAATGGGCGCTTGTCGC GTGCCAGATC chrIX:336092-336635 - 70 8.60e-08 TA GTTTAATGGTCAGAATGGGCGCTTGTCGC GTGCCAGATC chrIV:568694-569337 + 8 8.60e-08 CGTGATA GTTTAATGGTCAGAATGGGCGCTTGTCGC GTGCCAGATC chrXIII:259007-259379 - 59 2.42e-07 TGGCAACTTG GCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrXII:167759-168260 - 29 2.42e-07 TGGCAACTTG GCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrX:390790-391334 - 66 2.83e-07 TCAGTA GCTCAGTAGGAAGAGCGTCAGTCTCATAA TCTGAAGGTC chrIV:1175614-1176154 + 4 2.83e-07 GTA GCTCAGTAGGAAGAGCGTCAGTCTCATAA TCTGAAGGTC chrXIII:195929-196309 - 65 3.57e-07 GGCGTGT GGTCTAGTGGTATGATTCTCGCTTTGGGC GACTTCCTGA chrXII:92317-92837 + 29 3.57e-07 AAGGGCGTGT GGTCTAGTGGTATGATTCTCGCTTTGGGC GACTTCCTGA chrVI:101152-101679 + 19 3.57e-07 TCGGGCGTGT GGTCTAGTGGTATGATTCTCGCTTTGGGC GACTTCCTGA chrXVI:744068-744602 + 7 4.46e-07 CTCCTT AGCTTAGTGGTAGAGCGTTGCACTTGTAA TGCAAAGGTC chrVII:661524-661991 + 50 4.46e-07 TTGCCTCCTT AGCTTAGTGGTAGAGCGTTGCACTTGTAA TGCAAAGGTC chrII:405574-406276 + 11 4.46e-07 TAGCTCGCGT GGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrXVI:860107-860703 + 32 7.29e-07 AAGCGCAAGT GGTTTAGTGGTAAAATCCAACGTTGCCAT CGTTGGGCCC chrXVI:572044-572597 + 7 7.29e-07 GCAAGT GGTTTAGTGGTAAAATCCAACGTTGCCAT CGTTGGGCCC chrXV:226449-226885 - 28 7.29e-07 CAGCGCAAGT GGTTTAGTGGTAAAATCCAACGTTGCCAT CGTTGGGCCC chrVI:161995-162492 + 43 7.29e-07 AAGCGCAAGT GGTTTAGTGGTAAAATCCAACGTTGCCAT CGTTGGGCCC chrXI:312850-314030 - 45 1.01e-06 TGCCATCTTA GTATAGTGGTTAGTACACATCGTTGTGGC CGATGAAACC chrVIII:62559-62974 + 48 1.01e-06 TGCCATCTTA GTATAGTGGTTAGTACACATCGTTGTGGC CGATGAAACC chrXII:605132-605624 - 67 1.15e-06 GTGTA GCTCAGTGGTTAGAGCTTCGTGCTTATAG CAACATTCGG chrVII:876144-877396 + 58 1.56e-06 TGTCGAGCTG GCTTCGGAGGAAGAACTTTGGATTGTAGA TGTGTATTTG chrIII:123394-123803 - 64 2.20e-06 GGGCGTGT GGTCTAGAGGTATGATTCTCGCTTAGGGT GCGGGAGGTC chrXII:1012110-1012552 - 54 2.60e-06 GCCAGTCAGC CGCTAAGGGCAAGGGCACGCGACTACGGC GTCGGCTAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBBYARTKGKTAKMRCKYHMSVYTNBBAH MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:794232-794592 1.6e-12 63_[+2]_8 chrXII:875182-875614 6.6e-12 36_[+2]_35 chrVII:115314-115734 6.6e-12 22_[+2]_49 chrXVI:856724-857144 1e-11 26_[+2]_45 chrXIII:320998-321336 1e-11 64_[-2]_7 chrXII:656820-657201 1e-11 8_[-2]_63 chrXI:517799-518175 1e-11 59_[+2]_12 chrX:414785-415251 1.3e-10 6_[+2]_65 chrV:435590-436033 1.3e-10 25_[-2]_46 chrIX:300015-300608 1.3e-10 1_[-2]_70 chrIV:1201539-1202046 1.3e-10 16_[+2]_55 chrIII:151114-151589 1.3e-10 17_[-2]_54 chrXII:448510-448859 4.3e-10 49_[-2]_22 chrV:249787-250829 4.3e-10 36_[+2]_35 chrV:130859-131409 4.3e-10 31_[-2]_40 chrIV:802551-803016 4.3e-10 31_[-2]_40 chrIV:645022-645387 4.3e-10 32_[-2]_39 chrIV:520742-521226 4.3e-10 46_[+2]_25 chrIII:168081-168548 4.3e-10 70_[-2]_1 chrII:350615-351053 4.3e-10 51_[+2]_20 chrXV:110850-111204 2e-09 18_[-2]_53 chrXIV:96037-96512 2e-09 50_[-2]_21 chrVII:779385-779930 2e-09 17_[+2]_54 chrXVI:209976-210473 4.4e-09 51_[-2]_20 chrXIII:290448-291224 4.4e-09 23_[+2]_48 chrXI:140654-141508 4.4e-09 20_[-2]_51 chrX:115767-116193 4.4e-09 42_[-2]_29 chrIX:370154-370736 4.4e-09 30_[+2]_41 chrII:644963-645459 4.4e-09 14_[+2]_57 chrIX:197328-197945 7.3e-09 14_[+2]_57 chrIV:1016972-1017517 7.3e-09 46_[-2]_25 chrIV:1075278-1075757 1.3e-08 39_[-2]_32 chrXI:490751-491248 1.5e-08 27_[+2]_44 chrX:233701-234216 1.5e-08 39_[+2]_32 chrV:492196-492562 1.5e-08 57_[-2]_14 chrIV:1256798-1257308 1.5e-08 38_[-2]_33 chrXIV:374615-375232 1.7e-08 4_[+2]_67 chrVIII:358259-358781 1.7e-08 61_[-2]_10 chrIV:1095140-1095675 1.7e-08 66_[-2]_5 chrXV:594110-594679 2.1e-08 43_[-2]_28 chrXV:353836-354306 3.2e-08 54_[-2]_17 chrVIII:115928-116399 3.2e-08 28_[-2]_43 chrIX:174694-175390 3.2e-08 47_[+2]_24 chrXVI:689361-689864 3.6e-08 11_[+2]_60 chrXI:302677-303254 5.9e-08 10_[+2]_61 chrX:415737-416243 5.9e-08 59_[-2]_12 chrVII:878541-879041 5.9e-08 37_[-2]_34 chrVII:287161-287676 5.9e-08 50_[-2]_21 chrXVI:435622-436224 6.5e-08 54_[-2]_17 chrII:642832-643252 6.5e-08 49_[-2]_22 chrX:517658-518113 7.1e-08 12_[-2]_59 chrV:99886-100356 7.1e-08 69_[+2]_2 chrIII:149705-150227 7.1e-08 11_[+2]_60 chrXV:274455-275003 8.6e-08 2_[+2]_69 chrXI:513094-513619 8.6e-08 59_[-2]_12 chrX:355182-355754 8.6e-08 46_[+2]_25 chrX:204534-205027 8.6e-08 13_[+2]_58 chrVII:544326-544881 8.6e-08 57_[-2]_14 chrIX:336092-336635 8.6e-08 69_[-2]_2 chrIV:568694-569337 8.6e-08 7_[+2]_64 chrXIII:259007-259379 2.4e-07 58_[-2]_13 chrXII:167759-168260 2.4e-07 28_[-2]_43 chrX:390790-391334 2.8e-07 65_[-2]_6 chrIV:1175614-1176154 2.8e-07 3_[+2]_68 chrXIII:195929-196309 3.6e-07 64_[-2]_7 chrXII:92317-92837 3.6e-07 28_[+2]_43 chrVI:101152-101679 3.6e-07 18_[+2]_53 chrXVI:744068-744602 4.5e-07 6_[+2]_65 chrVII:661524-661991 4.5e-07 49_[+2]_22 chrII:405574-406276 4.5e-07 10_[+2]_61 chrXVI:860107-860703 7.3e-07 31_[+2]_40 chrXVI:572044-572597 7.3e-07 6_[+2]_65 chrXV:226449-226885 7.3e-07 27_[-2]_44 chrVI:161995-162492 7.3e-07 42_[+2]_29 chrXI:312850-314030 1e-06 44_[-2]_27 chrVIII:62559-62974 1e-06 47_[+2]_24 chrXII:605132-605624 1.1e-06 66_[-2]_5 chrVII:876144-877396 1.6e-06 57_[+2]_14 chrIII:123394-123803 2.2e-06 63_[-2]_8 chrXII:1012110-1012552 2.6e-06 53_[-2]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBBYARTKGKTAKMRCKYHMSVYTNBBAH MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GBBYARTKGKTAKMRCKYHMSVYTNBBAH width=29 seqs=80 chrVII:794232-794592 ( 64) GCGCAGTTGGTAGCGCGCTTCCCTTGCAA 1 chrXII:875182-875614 ( 37) GCTCAGTTGGTAGAGCGTTCGGCTTTTAA 1 chrVII:115314-115734 ( 23) GCTCAGTTGGTAGAGCGTTCGGCTTTTAA 1 chrXVI:856724-857144 ( 27) GCGTAGTCGGTAGCGCGCTCCCTTAGCAT 1 chrXIII:320998-321336 ( 65) GCGTAGTCGGTAGCGCGCTCCCTTAGCAT 1 chrXII:656820-657201 ( 9) GCGTAGTCGGTAGCGCGCTCCCTTAGCAT 1 chrXI:517799-518175 ( 60) GCGTAGTCGGTAGCGCGCTCCCTTAGCAT 1 chrX:414785-415251 ( 7) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrV:435590-436033 ( 26) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrIX:300015-300608 ( 2) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrIV:1201539-1202046 ( 17) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrIII:151114-151589 ( 18) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrXII:448510-448859 ( 50) GTGTAGTGGTTATCACTTTCGGTTTTGAT 1 chrV:249787-250829 ( 37) GTGTAGTGGTTATCACTTTCGGTTTTGAT 1 chrV:130859-131409 ( 32) GTGTAGTGGTTATCACTTTCGGTTTTGAT 1 chrIV:802551-803016 ( 32) GTGTAGTGGTTATCACTTTCGGTTTTGAT 1 chrIV:645022-645387 ( 33) GTGTAGTGGTTATCACTTTCGGTTTTGAT 1 chrIV:520742-521226 ( 47) GTGTAGTGGTTATCACTTTCGGTTTTGAT 1 chrIII:168081-168548 ( 71) GTGTAGTGGTTATCACTTTCGGTTTTGAT 1 chrII:350615-351053 ( 52) GTGTAGTGGTTATCACTTTCGGTTTTGAT 1 chrXV:110850-111204 ( 19) GTGTAGTGGTTATCATCCCACCCTTCCAA 1 chrXIV:96037-96512 ( 51) GTGTAGTGGTTATCATCCCACCCTTCCAA 1 chrVII:779385-779930 ( 18) GTGTAGTGGTTATCATCCCACCCTTCCAA 1 chrXVI:209976-210473 ( 52) GTGTAACGGCTATCACATCACGCTTTCAC 1 chrXIII:290448-291224 ( 24) GTGTAACGGCTATCACATCACGCTTTCAC 1 chrXI:140654-141508 ( 21) GTGTAACGGCTATCACATCACGCTTTCAC 1 chrX:115767-116193 ( 43) GTGTAACGGCTATCACATCACGCTTTCAC 1 chrIX:370154-370736 ( 31) GTGTAACGGCTATCACATCACGCTTTCAC 1 chrII:644963-645459 ( 15) GTGTAACGGCTATCACATCACGCTTTCAC 1 chrIX:197328-197945 ( 15) GTGTAACGGCTATCACATCACGTTCTCAC 1 chrIV:1016972-1017517 ( 47) GTGTAACGGCTATCACATCACGTTCTCAC 1 chrIV:1075278-1075757 ( 40) GTGTAGCGGCTATCACGTTGCCTTCACAC 1 chrXI:490751-491248 ( 28) GCCCAATGGTCACGGCGTCTGGCTACGAA 1 chrX:233701-234216 ( 40) GCCCAATGGTCACGGCGTCTGGCTACGAA 1 chrV:492196-492562 ( 58) GCCCAATGGTCACGGCGTCTGGCTACGAA 1 chrIV:1256798-1257308 ( 39) GTTCAGTGGTTAGAATTCATGCTTCCCAA 1 chrXIV:374615-375232 ( 5) GCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrVIII:358259-358781 ( 62) GCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrIV:1095140-1095675 ( 67) GCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrXV:594110-594679 ( 44) GTTCAGTGGTTAGAATTTATGCTTCCCAA 1 chrXV:353836-354306 ( 55) GCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrVIII:115928-116399 ( 29) GCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrIX:174694-175390 ( 48) GCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrXVI:689361-689864 ( 12) GCCGAGTGGTTAAGGCGACAGACTTGAAA 1 chrXI:302677-303254 ( 11) GGCTCAATGGTAGAGCTTTCGACTCCAAT 1 chrX:415737-416243 ( 60) GGCTCAATGGTAGAGCTTTCGACTCCAAT 1 chrVII:878541-879041 ( 38) GGCTCAATGGTAGAGCTTTCGACTCCAAT 1 chrVII:287161-287676 ( 51) GGCTCAATGGTAGAGCTTTCGACTCCAAT 1 chrXVI:435622-436224 ( 55) GGCGCAGTGGTAGCGCAGCAGATTGCAAA 1 chrII:642832-643252 ( 50) GGCGCAGTGGTAGCGCAGCAGATTGCAAA 1 chrX:517658-518113 ( 13) GGCGCAGTGGAAGCGCGCAGGGCTCATAA 1 chrV:99886-100356 ( 70) GGCGCAGTGGAAGCGCGCAGGGCTCATAA 1 chrIII:149705-150227 ( 12) GGCGCAGTGGAAGCGCGCAGGGCTCATAA 1 chrXV:274455-275003 ( 3) GCCGAGTGGTTAAGGCGATGCCCTGCTAT 1 chrXI:513094-513619 ( 60) GTTTAATGGTCAGAATGGGCGCTTGTCGC 1 chrX:355182-355754 ( 47) GTTTAATGGTCAGAATGGGCGCTTGTCGC 1 chrX:204534-205027 ( 14) GTTTAATGGTCAGAATGGGCGCTTGTCGC 1 chrVII:544326-544881 ( 58) GTTTAATGGTCAGAATGGGCGCTTGTCGC 1 chrIX:336092-336635 ( 70) GTTTAATGGTCAGAATGGGCGCTTGTCGC 1 chrIV:568694-569337 ( 8) GTTTAATGGTCAGAATGGGCGCTTGTCGC 1 chrXIII:259007-259379 ( 59) GCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrXII:167759-168260 ( 29) GCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrX:390790-391334 ( 66) GCTCAGTAGGAAGAGCGTCAGTCTCATAA 1 chrIV:1175614-1176154 ( 4) GCTCAGTAGGAAGAGCGTCAGTCTCATAA 1 chrXIII:195929-196309 ( 65) GGTCTAGTGGTATGATTCTCGCTTTGGGC 1 chrXII:92317-92837 ( 29) GGTCTAGTGGTATGATTCTCGCTTTGGGC 1 chrVI:101152-101679 ( 19) GGTCTAGTGGTATGATTCTCGCTTTGGGC 1 chrXVI:744068-744602 ( 7) AGCTTAGTGGTAGAGCGTTGCACTTGTAA 1 chrVII:661524-661991 ( 50) AGCTTAGTGGTAGAGCGTTGCACTTGTAA 1 chrII:405574-406276 ( 11) GGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrXVI:860107-860703 ( 32) GGTTTAGTGGTAAAATCCAACGTTGCCAT 1 chrXVI:572044-572597 ( 7) GGTTTAGTGGTAAAATCCAACGTTGCCAT 1 chrXV:226449-226885 ( 28) GGTTTAGTGGTAAAATCCAACGTTGCCAT 1 chrVI:161995-162492 ( 43) GGTTTAGTGGTAAAATCCAACGTTGCCAT 1 chrXI:312850-314030 ( 45) GTATAGTGGTTAGTACACATCGTTGTGGC 1 chrVIII:62559-62974 ( 48) GTATAGTGGTTAGTACACATCGTTGTGGC 1 chrXII:605132-605624 ( 67) GCTCAGTGGTTAGAGCTTCGTGCTTATAG 1 chrVII:876144-877396 ( 58) GCTTCGGAGGAAGAACTTTGGATTGTAGA 1 chrIII:123394-123803 ( 64) GGTCTAGAGGTATGATTCTCGCTTAGGGT 1 chrXII:1012110-1012552 ( 54) CGCTAAGGGCAAGGGCACGCGACTACGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBBYARTKGKTAKMRCKYHMSVYTNBBAH MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 40824 bayes= 9.24436 E= 1.1e-191 -364 -391 236 -1297 -1297 95 48 27 -364 61 100 0 -306 61 -59 82 124 -59 -1297 -118 78 -1297 130 -1297 -232 -74 18 97 -264 -74 137 17 -1297 -1297 241 -1297 -1297 -59 145 22 -183 -59 -233 127 168 -1297 -1297 -1297 -106 -233 145 -6 11 126 0 -364 64 -1297 145 -1297 -1297 202 -1297 -39 -94 -110 141 -32 -264 95 -91 64 -47 84 -110 17 17 95 -74 -83 -1297 95 173 -464 0 55 104 -364 -1297 148 -1297 61 -1297 -1297 -1297 168 -83 34 34 17 -132 48 18 36 -94 95 26 -32 134 -1297 18 -1297 53 48 -391 -18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBBYARTKGKTAKMRCKYHMSVYTNBBAH MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 80 E= 1.1e-191 0.025000 0.012500 0.962500 0.000000 0.000000 0.362500 0.262500 0.375000 0.025000 0.287500 0.375000 0.312500 0.037500 0.287500 0.125000 0.550000 0.737500 0.125000 0.000000 0.137500 0.537500 0.000000 0.462500 0.000000 0.062500 0.112500 0.212500 0.612500 0.050000 0.112500 0.487500 0.350000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.512500 0.362500 0.087500 0.125000 0.037500 0.750000 1.000000 0.000000 0.000000 0.000000 0.150000 0.037500 0.512500 0.300000 0.337500 0.450000 0.187500 0.025000 0.487500 0.000000 0.512500 0.000000 0.000000 0.762500 0.000000 0.237500 0.162500 0.087500 0.500000 0.250000 0.050000 0.362500 0.100000 0.487500 0.225000 0.337500 0.087500 0.350000 0.350000 0.362500 0.112500 0.175000 0.000000 0.362500 0.625000 0.012500 0.312500 0.275000 0.387500 0.025000 0.000000 0.525000 0.000000 0.475000 0.000000 0.000000 0.000000 1.000000 0.175000 0.237500 0.237500 0.350000 0.125000 0.262500 0.212500 0.400000 0.162500 0.362500 0.225000 0.250000 0.787500 0.000000 0.212500 0.000000 0.450000 0.262500 0.012500 0.275000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBBYARTKGKTAKMRCKYHMSVYTNBBAH MEME-2 regular expression -------------------------------------------------------------------------------- G[TCG][GTC][TC]A[AG][TG][GT]G[GT]TA[GT][CA][GA][CT][GT][TC][TCA][CA][GC][GAC][CT]T[TCG][TCG][CTG][AG][ATC] -------------------------------------------------------------------------------- Time 594.70 secs. ******************************************************************************** ******************************************************************************** MOTIF ARTCTKRYGCCTTAAMCMACTHGGCCAA MEME-3 width = 28 sites = 18 llr = 464 E-value = 8.4e-073 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARTCTKRYGCCTTAAMCMACTHGGCCAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A a3:12:5:::12:a95:3a3:2:2::76 pos.-specific C ::191217:a9::::5a5:732::7a:2 probability G :72:264:a:::::1::2:::1783::: matrix T ::7:53:3:::8a:::::::743:::32 bits 2.4 ** * * 2.2 *** * * 1.9 * *** * * 1.7 * * *** ** * * * Relative 1.4 * * *** ** * ** **** Entropy 1.2 ** * **** *** * ** **** (37.2 bits) 1.0 ** * ********** *** **** 0.7 **** **************** ***** 0.5 **** **************** ****** 0.2 **** **************** ****** 0.0 ---------------------------- Multilevel AGTCTGACGCCTTAAACCACTTGGCCAA consensus AG ATGT A C A ACATAG TC sequence G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTCTKRYGCCTTAAMCMACTHGGCCAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------- chrXII:592360-592875 + 19 1.30e-15 AATCCACCTA AATCTGACGCCTTAAACCACTCGGCCAA ACTCCCATTG chrX:617704-618143 - 52 1.30e-15 AATCCACCTA AATCTGACGCCTTAAACCACTCGGCCAA ACTCCCATTG chrX:424273-424716 + 38 1.98e-14 ACAGATCTTA AGTCTGCCGCCTTAGACCACTCGGCCAA CCCTCCATCT chrXV:228097-228586 - 46 1.09e-13 TGCGATTAAC AGTCGCACGCCTTAACCAACTTGGCCAT GGAGTCTAAT chrXI:74385-74902 - 37 1.09e-13 TGCGATTAAC AGTCGCACGCCTTAACCAACTTGGCCAT GGAGTCTAAT chrIII:127571-127915 - 29 1.09e-13 TGCGATTAAC AGTCGCACGCCTTAACCAACTTGGCCAT GGAGTCATTT chrXI:83984-84436 - 54 1.52e-12 ACAGATCTTA AGTCTGCCGCATTAGACCACTCGGCCAA CCCTCCATAC chrXIII:837685-838251 - 17 1.99e-12 GGTAAATTAC AGTCTTGCGCCTTAAACCAACTTGGCTA CCGAGAGTCA chrX:542769-543271 + 40 1.99e-12 GATAAATTAC AGTCTTGCGCCTTAAACCAACTTGGCTA CCGAGAGTAT chrX:354018-354527 - 29 1.99e-12 GGTAAATTAC AGTCTTGCGCCTTAAACCAACTTGGCTA CCGAGAGTGA chrVI:210443-210911 + 46 1.99e-12 GGTAAATTAC AGTCTTGCGCCTTAAACCAACTTGGCTA CCGAGAGTCG chrVI:167214-167713 - 31 1.99e-12 GGTAAATTAC AGTCTTGCGCCTTAAACCAACTTGGCTA CCGAGAGTCG chrXIV:602103-602581 - 26 5.26e-12 CCGCGTTATT AGCACGGTGCCTTAACCAACTGGGCCAA GAGACCATTG chrXIV:569624-570146 + 72 5.26e-12 CCGCGTTATT AGCACGGTGCCTTAACCAACTGGGCCAA G chrXIII:586411-586904 + 69 9.87e-12 TCTGCGTGTT AAGCAGATGCCATAACCGACTAGACCAC GAAA chrX:378188-378588 - 28 9.87e-12 TCTGCGTGTT AAGCAGATGCCATAACCGACTAGACCAC GAAACCTATT chrVII:823339-823715 - 11 9.87e-12 TCTGCGTGTT AAGCAGATGCCATAACCGACTAGACCAC GAAACCACTC chrV:469238-469728 - 30 9.87e-12 TCTGCGTGTT AAGCAGATGCCATAACCGACTAGACCAC GAAACCAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTCTKRYGCCTTAAMCMACTHGGCCAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:592360-592875 1.3e-15 18_[+3]_54 chrX:617704-618143 1.3e-15 51_[-3]_21 chrX:424273-424716 2e-14 37_[+3]_35 chrXV:228097-228586 1.1e-13 45_[-3]_27 chrXI:74385-74902 1.1e-13 36_[-3]_36 chrIII:127571-127915 1.1e-13 28_[-3]_44 chrXI:83984-84436 1.5e-12 53_[-3]_19 chrXIII:837685-838251 2e-12 16_[-3]_56 chrX:542769-543271 2e-12 39_[+3]_33 chrX:354018-354527 2e-12 28_[-3]_44 chrVI:210443-210911 2e-12 45_[+3]_27 chrVI:167214-167713 2e-12 30_[-3]_42 chrXIV:602103-602581 5.3e-12 25_[-3]_47 chrXIV:569624-570146 5.3e-12 71_[+3]_1 chrXIII:586411-586904 9.9e-12 68_[+3]_4 chrX:378188-378588 9.9e-12 27_[-3]_45 chrVII:823339-823715 9.9e-12 10_[-3]_62 chrV:469238-469728 9.9e-12 29_[-3]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTCTKRYGCCTTAAMCMACTHGGCCAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARTCTKRYGCCTTAAMCMACTHGGCCAA width=28 seqs=18 chrXII:592360-592875 ( 19) AATCTGACGCCTTAAACCACTCGGCCAA 1 chrX:617704-618143 ( 52) AATCTGACGCCTTAAACCACTCGGCCAA 1 chrX:424273-424716 ( 38) AGTCTGCCGCCTTAGACCACTCGGCCAA 1 chrXV:228097-228586 ( 46) AGTCGCACGCCTTAACCAACTTGGCCAT 1 chrXI:74385-74902 ( 37) AGTCGCACGCCTTAACCAACTTGGCCAT 1 chrIII:127571-127915 ( 29) AGTCGCACGCCTTAACCAACTTGGCCAT 1 chrXI:83984-84436 ( 54) AGTCTGCCGCATTAGACCACTCGGCCAA 1 chrXIII:837685-838251 ( 17) AGTCTTGCGCCTTAAACCAACTTGGCTA 1 chrX:542769-543271 ( 40) AGTCTTGCGCCTTAAACCAACTTGGCTA 1 chrX:354018-354527 ( 29) AGTCTTGCGCCTTAAACCAACTTGGCTA 1 chrVI:210443-210911 ( 46) AGTCTTGCGCCTTAAACCAACTTGGCTA 1 chrVI:167214-167713 ( 31) AGTCTTGCGCCTTAAACCAACTTGGCTA 1 chrXIV:602103-602581 ( 26) AGCACGGTGCCTTAACCAACTGGGCCAA 1 chrXIV:569624-570146 ( 72) AGCACGGTGCCTTAACCAACTGGGCCAA 1 chrXIII:586411-586904 ( 69) AAGCAGATGCCATAACCGACTAGACCAC 1 chrX:378188-378588 ( 28) AAGCAGATGCCATAACCGACTAGACCAC 1 chrVII:823339-823715 ( 11) AAGCAGATGCCATAACCGACTAGACCAC 1 chrV:469238-469728 ( 30) AAGCAGATGCCATAACCGACTAGACCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTCTKRYGCCTTAAMCMACTHGGCCAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 41391 bayes= 11.3008 E= 8.4e-073 168 -1081 -1081 -1081 10 -1081 183 -1081 -1081 -76 24 109 -149 224 -1081 -1081 -49 -76 -17 68 -1081 -17 156 -17 68 -76 105 -1081 -1081 183 -1081 10 -1081 -1081 241 -1081 -1081 241 -1081 -1081 -249 233 -1081 -1081 -49 -1081 -1081 132 -1081 -1081 -1081 168 168 -1081 -1081 -1081 151 -1081 -76 -1081 68 141 -1081 -1081 -1081 241 -1081 -1081 -17 141 24 -1081 168 -1081 -1081 -1081 -17 194 -1081 -1081 -1081 56 -1081 121 -49 24 -76 51 -1081 -1081 194 -17 -49 -1081 205 -1081 -1081 194 56 -1081 -1081 241 -1081 -1081 121 -1081 -1081 -17 97 24 -1081 -90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTCTKRYGCCTTAAMCMACTHGGCCAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 18 E= 8.4e-073 1.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.111111 0.222222 0.666667 0.111111 0.888889 0.000000 0.000000 0.222222 0.111111 0.166667 0.500000 0.000000 0.166667 0.555556 0.277778 0.500000 0.111111 0.388889 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.055556 0.944444 0.000000 0.000000 0.222222 0.000000 0.000000 0.777778 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.277778 0.500000 0.222222 0.000000 1.000000 0.000000 0.000000 0.000000 0.277778 0.722222 0.000000 0.000000 0.000000 0.277778 0.000000 0.722222 0.222222 0.222222 0.111111 0.444444 0.000000 0.000000 0.722222 0.277778 0.222222 0.000000 0.777778 0.000000 0.000000 0.722222 0.277778 0.000000 0.000000 1.000000 0.000000 0.000000 0.722222 0.000000 0.000000 0.277778 0.611111 0.222222 0.000000 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTCTKRYGCCTTAAMCMACTHGGCCAA MEME-3 regular expression -------------------------------------------------------------------------------- A[GA][TG]C[TA][GT][AG][CT]GCC[TA]TAA[AC]C[CAG]A[CA][TC][TAC][GT][GA][CG]C[AT][AC] -------------------------------------------------------------------------------- Time 865.50 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71844-73678 4.06e-01 100 chrI:81832-82330 2.85e-01 100 chrI:138860-139368 2.22e-01 100 chrI:142138-143572 3.28e-02 100 chrI:166166-166631 9.37e-01 100 chrI:180946-181505 4.82e-02 100 chrI:182318-183175 3.12e-02 100 chrII:6390-6560 8.14e-02 100 chrII:9355-10004 8.61e-04 5_[-1(2.40e-07)]_66 chrII:36235-36876 4.09e-01 100 chrII:44951-45384 7.48e-01 100 chrII:45603-46733 5.92e-01 100 chrII:59603-61465 6.46e-01 100 chrII:87911-88574 6.09e-01 100 chrII:88940-90122 1.94e-01 100 chrII:90269-90421 6.86e-01 100 chrII:159839-159999 6.06e-01 100 chrII:165057-165441 8.93e-03 100 chrII:167574-169652 4.11e-01 100 chrII:181324-181668 2.69e-01 100 chrII:197272-197851 1.60e-06 25_[+1(7.20e-11)]_46 chrII:216733-217481 9.68e-01 100 chrII:226966-227351 2.00e-04 17_[+1(3.31e-08)]_54 chrII:255036-255690 4.52e-01 100 chrII:256294-257377 8.54e-01 100 chrII:266196-266691 2.79e-05 26_[+1(4.36e-09)]_45 chrII:326521-327069 4.90e-07 48_[-1(1.60e-10)]_23 chrII:332185-333066 2.65e-01 100 chrII:347377-347953 1.58e-03 39_[-1(2.40e-07)]_32 chrII:350615-351053 1.18e-07 51_[+2(4.34e-10)]_20 chrII:405574-406276 2.83e-10 10_[+2(4.46e-07)]_4_[+1(4.87e-10)]_\ 28 chrII:415519-415880 7.54e-01 100 chrII:476860-477718 4.79e-01 100 chrII:478967-479588 5.32e-01 100 chrII:544556-544791 8.58e-01 100 chrII:592286-593321 2.06e-01 100 chrII:604030-607129 5.37e-01 100 chrII:642832-643252 1.67e-08 16_[-1(5.43e-08)]_4_[-2(6.49e-08)]_\ 22 chrII:644963-645459 3.13e-13 14_[+2(4.42e-09)]_3_[+1(1.09e-11)]_\ 25 chrII:680370-682474 1.59e-01 100 chrIII:60-1046 1.34e-01 100 chrIII:29552-30946 8.16e-01 100 chrIII:58686-59028 8.41e-01 100 chrIII:78489-78869 4.56e-01 100 chrIII:82378-83277 7.06e-01 100 chrIII:90850-91108 6.85e-02 100 chrIII:107164-107823 8.49e-01 100 chrIII:123394-123803 2.72e-13 30_[-1(1.50e-14)]_4_[-2(2.20e-06)]_\ 8 chrIII:127571-127915 2.17e-15 28_[-3(1.09e-13)]_9_[+1(5.88e-09)]_\ 6 chrIII:137847-139024 5.24e-01 100 chrIII:142250-143018 6.78e-01 100 chrIII:149705-150227 4.78e-08 11_[+2(7.14e-08)]_4_[+1(1.58e-07)]_\ 27 chrIII:151114-151589 2.24e-06 17_[-2(1.32e-10)]_54 chrIII:162182-163889 3.29e-01 100 chrIII:168081-168548 1.17e-13 38_[-1(4.76e-11)]_3_[-2(4.34e-10)]_\ 1 chrIII:177103-178785 7.97e-01 100 chrIII:227771-228287 2.32e-04 32_[+1(8.70e-08)]_39 chrIII:262735-262914 6.97e-01 100 chrIII:295307-296045 7.81e-01 100 chrIII:316233-316596 3.64e-01 100 chrIV:6-313 7.10e-02 100 chrIV:83433-83859 9.92e-01 100 chrIV:116228-118227 9.98e-01 100 chrIV:118440-118861 1.71e-01 100 chrIV:125318-125808 7.65e-01 100 chrIV:129890-130993 6.22e-01 100 chrIV:216539-217538 6.37e-02 100 chrIV:221148-222391 8.69e-01 100 chrIV:229333-230753 4.01e-01 100 chrIV:307999-310174 5.10e-01 100 chrIV:321617-321963 1.19e-01 100 chrIV:322205-323611 4.22e-02 32_[+3(4.49e-05)]_40 chrIV:340174-341657 9.82e-01 100 chrIV:358001-358417 9.92e-01 100 chrIV:359201-359838 4.76e-01 100 chrIV:410156-410788 4.91e-01 100 chrIV:411233-411661 3.22e-01 100 chrIV:434032-435124 8.95e-01 100 chrIV:437545-438124 3.99e-04 38_[+1(3.31e-08)]_33 chrIV:465168-465721 8.52e-01 100 chrIV:488465-489148 4.90e-07 42_[-1(1.60e-10)]_29 chrIV:489747-491257 1.78e-01 100 chrIV:491406-492701 4.18e-01 100 chrIV:519652-520364 6.65e-01 100 chrIV:520742-521226 3.02e-08 46_[+2(4.34e-10)]_25 chrIV:539002-539217 6.17e-02 100 chrIV:541179-541905 5.81e-01 100 chrIV:568694-569337 3.38e-09 7_[+2(8.60e-08)]_3_[+1(7.14e-09)]_\ 32 chrIV:578883-580712 3.21e-01 100 chrIV:601112-602348 2.10e-01 100 chrIV:619602-620248 9.94e-01 100 chrIV:645022-645387 2.14e-13 [-1(4.76e-11)]_3_[-2(4.34e-10)]_39 chrIV:667705-668215 3.11e-01 100 chrIV:802551-803016 7.43e-08 [+1(3.58e-05)]_2_[-2(4.34e-10)]_40 chrIV:835752-837320 2.86e-02 100 chrIV:884242-884673 8.20e-07 55_[+1(8.73e-10)]_16 chrIV:913917-914853 2.13e-01 100 chrIV:946146-946640 2.58e-05 26_[+1(1.81e-08)]_45 chrIV:980751-981224 2.14e-04 38_[-1(3.31e-08)]_33 chrIV:992675-993249 8.97e-01 100 chrIV:1013740-1013957 4.61e-01 100 chrIV:1016972-1017517 1.29e-13 14_[-1(1.27e-12)]_3_[-2(7.34e-09)]_\ 25 chrIV:1062677-1063060 4.45e-01 100 chrIV:1075278-1075757 4.65e-12 6_[-1(4.76e-11)]_4_[-2(1.33e-08)]_\ 32 chrIV:1095140-1095675 9.40e-11 14_[-1(2.35e-09)]_23_[-2(1.68e-08)]_\ 5 chrIV:1150720-1151180 2.22e-01 100 chrIV:1175614-1176154 2.91e-09 3_[+2(2.83e-07)]_4_[+1(1.53e-09)]_\ 35 chrIV:1201539-1202046 2.02e-13 16_[+2(1.32e-10)]_4_[+1(1.60e-10)]_\ 22 chrIV:1256798-1257308 2.73e-14 6_[-1(2.15e-12)]_3_[-2(1.50e-08)]_\ 33 chrIV:1278621-1279119 4.27e-02 60_[+2(8.76e-05)]_11 chrIV:1300771-1301337 4.62e-01 100 chrIV:1305373-1306060 4.01e-04 15_[+1(3.31e-08)]_56 chrIV:1352245-1353446 8.84e-01 100 chrIV:1355722-1356007 7.64e-01 100 chrIV:1359418-1360197 3.22e-01 100 chrIV:1401189-1403328 1.10e-01 100 chrIV:1450624-1451256 7.46e-02 100 chrIV:1461419-1461850 1.69e-01 100 chrIV:1489086-1489952 9.73e-01 100 chrIX:23476-25243 1.63e-01 100 chrIX:68136-69576 9.64e-01 100 chrIX:99629-100035 6.93e-01 100 chrIX:174694-175390 2.47e-05 47_[+2(3.22e-08)]_24 chrIX:183147-183714 1.38e-06 61_[-1(7.20e-11)]_10 chrIX:197328-197945 1.29e-13 14_[+2(7.34e-09)]_3_[+1(1.27e-12)]_\ 25 chrIX:210512-211307 9.68e-01 100 chrIX:248602-249332 9.58e-01 100 chrIX:254199-254565 3.13e-01 100 chrIX:255156-257112 2.21e-01 100 chrIX:257332-258087 3.96e-01 100 chrIX:300015-300608 2.22e-06 1_[-2(1.32e-10)]_70 chrIX:315680-315967 4.80e-01 100 chrIX:317824-318271 9.99e-01 100 chrIX:323654-324393 7.27e-01 100 chrIX:325735-326204 8.77e-01 100 chrIX:336092-336635 1.09e-09 37_[-1(2.11e-09)]_3_[-2(8.60e-08)]_\ 2 chrIX:370154-370736 3.13e-13 30_[+2(4.42e-09)]_3_[+1(1.09e-11)]_\ 9 chrV:42160-42471 6.14e-01 100 chrV:53505-54038 1.77e-01 100 chrV:61044-62181 3.63e-01 100 chrV:66622-69336 7.79e-02 100 chrV:85125-86946 7.23e-01 100 chrV:99886-100356 5.09e-05 69_[+2(7.14e-08)]_2 chrV:110469-110888 6.16e-01 100 chrV:117439-118463 9.70e-01 100 chrV:130859-131409 1.36e-07 31_[-2(4.34e-10)]_40 chrV:135144-136061 7.90e-01 100 chrV:138460-140888 8.21e-01 100 chrV:176867-177466 1.69e-07 23_[+1(1.09e-11)]_48 chrV:249787-250829 2.47e-13 36_[+2(4.34e-10)]_3_[+1(4.76e-11)]_\ 3 chrV:270360-270685 7.02e-01 100 chrV:288139-288790 6.69e-04 30_[-1(8.70e-08)]_41 chrV:305781-306950 5.18e-01 100 chrV:311716-312302 1.47e-06 65_[-1(9.43e-11)]_6 chrV:321990-323051 8.80e-01 100 chrV:354699-355379 4.30e-01 100 chrV:362068-362518 7.44e-01 100 chrV:396180-398014 6.94e-01 100 chrV:423080-423602 9.10e-01 100 chrV:430993-431913 1.00e+00 100 chrV:434382-435168 4.65e-01 100 chrV:435590-436033 1.81e-06 25_[-2(1.32e-10)]_46 chrV:438064-438970 3.07e-01 100 chrV:441742-442667 1.85e-01 100 chrV:442976-443389 8.88e-07 71_[-1(7.20e-11)] chrV:469238-469728 4.95e-14 29_[-3(9.87e-12)]_9_[+1(8.73e-10)]_\ 5 chrV:487080-487584 4.30e-08 50_[-1(1.09e-11)]_21 chrV:492196-492562 2.56e-10 24_[-1(3.56e-09)]_4_[-2(1.50e-08)]_\ 14 chrV:550907-551576 5.93e-01 100 chrVI:4620-4781 3.73e-01 100 chrVI:64018-65399 5.66e-01 100 chrVI:82539-84448 1.45e-01 100 chrVI:95474-95886 6.71e-01 100 chrVI:101152-101679 4.74e-05 18_[+2(3.57e-07)]_53 chrVI:137159-137691 9.38e-01 100 chrVI:157840-158257 8.45e-01 100 chrVI:161995-162492 1.14e-03 42_[+2(7.29e-07)]_29 chrVI:167214-167713 5.11e-09 30_[-3(1.99e-12)]_42 chrVI:180665-181239 5.57e-01 100 chrVI:191023-191849 4.84e-01 100 chrVI:210443-210911 3.44e-09 45_[+3(1.99e-12)]_27 chrVI:220784-222224 1.89e-01 100 chrVI:222886-224172 2.43e-01 100 chrVI:226527-227261 5.94e-01 100 chrVII:322-2226 6.48e-01 100 chrVII:10242-10413 9.25e-01 100 chrVII:20333-20980 2.53e-01 100 chrVII:21224-21461 4.64e-01 100 chrVII:110344-110791 7.89e-01 100 chrVII:115314-115734 1.46e-08 22_[+2(6.60e-12)]_49 chrVII:122048-122698 2.57e-01 100 chrVII:147966-149762 9.41e-01 100 chrVII:185494-185937 1.47e-06 50_[-1(1.60e-10)]_21 chrVII:204715-205767 9.36e-01 100 chrVII:227333-228374 8.18e-01 100 chrVII:254108-254719 6.66e-01 100 chrVII:277001-278723 6.67e-03 69_[-3(3.45e-05)]_3 chrVII:287161-287676 1.85e-04 50_[-2(5.89e-08)]_21 chrVII:291700-291979 6.42e-01 100 chrVII:310289-312296 9.88e-01 100 chrVII:319231-320130 3.65e-01 100 chrVII:328375-329223 8.60e-01 100 chrVII:345833-346600 6.02e-01 100 chrVII:364889-366724 7.85e-01 100 chrVII:371222-371514 3.56e-02 60_[-1(1.77e-05)]_11 chrVII:400365-400551 8.77e-01 100 chrVII:400824-400975 6.05e-01 100 chrVII:401365-401619 9.94e-01 100 chrVII:405459-405815 7.48e-01 100 chrVII:411909-412605 5.26e-01 100 chrVII:422882-423494 4.82e-02 100 chrVII:438577-439947 9.93e-01 100 chrVII:440279-441155 4.94e-05 50_[-1(1.15e-08)]_21 chrVII:479136-482970 3.26e-01 100 chrVII:531294-532215 8.60e-01 100 chrVII:533820-535192 9.91e-01 100 chrVII:541702-542185 9.22e-01 100 chrVII:544326-544881 1.09e-09 25_[-1(2.11e-09)]_3_[-2(8.60e-08)]_\ 14 chrVII:545096-545985 9.83e-01 100 chrVII:555164-557437 9.92e-01 100 chrVII:561423-561723 9.23e-01 100 chrVII:599354-601442 6.87e-01 100 chrVII:609336-609971 2.46e-01 100 chrVII:648777-649375 2.66e-01 100 chrVII:661524-661991 2.34e-03 49_[+2(4.46e-07)]_22 chrVII:700273-701258 1.56e-06 10_[+1(1.15e-08)]_61 chrVII:706944-707191 9.18e-01 100 chrVII:726254-727197 3.82e-01 100 chrVII:727391-728369 9.44e-01 100 chrVII:730949-731463 3.16e-06 23_[+1(5.88e-09)]_48 chrVII:736194-736769 7.07e-01 100 chrVII:738914-739537 9.99e-01 100 chrVII:774142-774679 6.99e-06 30_[+1(1.37e-09)]_41 chrVII:779385-779930 1.66e-12 17_[+2(1.96e-09)]_3_[+1(3.39e-10)]_\ 22 chrVII:788313-788736 3.22e-02 55_[-3(8.78e-05)]_17 chrVII:794232-794592 1.34e-08 63_[+2(1.61e-12)]_8 chrVII:806160-808257 9.49e-01 100 chrVII:823339-823715 4.95e-14 10_[-3(9.87e-12)]_9_[+1(8.73e-10)]_\ 24 chrVII:828458-828999 2.17e-06 46_[-1(4.87e-10)]_25 chrVII:845174-845972 5.88e-01 100 chrVII:856735-857671 8.36e-01 100 chrVII:876144-877396 4.65e-04 57_[+2(1.56e-06)]_14 chrVII:878541-879041 1.85e-04 37_[-2(5.89e-08)]_34 chrVII:882422-884002 5.93e-02 100 chrVII:930729-931633 9.96e-01 100 chrVII:1000342-1000592 3.28e-01 100 chrVII:1003965-1004438 1.93e-01 100 chrVIII:34396-36340 1.82e-01 100 chrVIII:62559-62974 5.50e-04 47_[+2(1.01e-06)]_24 chrVIII:74874-76275 1.96e-01 100 chrVIII:84974-85386 7.40e-01 100 chrVIII:103739-104296 9.93e-01 100 chrVIII:115928-116399 3.08e-05 28_[-2(3.22e-08)]_43 chrVIII:119719-121695 4.29e-01 100 chrVIII:125901-126321 8.46e-01 100 chrVIII:126460-127542 6.91e-01 100 chrVIII:132805-133112 4.42e-01 100 chrVIII:134113-134749 6.12e-01 100 chrVIII:145825-146469 9.89e-01 100 chrVIII:148922-149317 9.05e-01 100 chrVIII:174466-175912 1.80e-01 100 chrVIII:214163-214324 3.63e-01 100 chrVIII:237465-238151 4.70e-01 100 chrVIII:296778-297272 6.15e-01 100 chrVIII:358259-358781 9.06e-10 9_[-1(1.15e-08)]_23_[-2(1.68e-08)]_\ 10 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13 chrXIII:267661-268314 7.31e-01 100 chrXIII:290448-291224 3.13e-13 23_[+2(4.42e-09)]_3_[+1(1.09e-11)]_\ 16 chrXIII:296615-298885 1.95e-01 100 chrXIII:302852-303193 1.35e-02 47_[+1(3.34e-05)]_24 chrXIII:320998-321336 7.99e-14 31_[-1(1.37e-09)]_4_[-2(1.03e-11)]_\ 7 chrXIII:352057-353105 7.87e-01 100 chrXIII:362933-363534 1.25e-01 100 chrXIII:372152-372674 8.61e-02 100 chrXIII:378906-379623 6.44e-01 100 chrXIII:420299-420868 4.04e-06 56_[-1(8.73e-10)]_15 chrXIII:433573-433761 4.26e-01 100 chrXIII:463328-463913 2.73e-05 24_[+1(2.11e-09)]_47 chrXIII:480379-480829 1.48e-06 68_[-1(1.60e-10)]_3 chrXIII:499071-500782 9.97e-01 100 chrXIII:504912-505240 2.18e-01 100 chrXIII:549922-551997 5.52e-01 100 chrXIII:572568-573500 6.28e-01 100 chrXIII:586411-586904 4.95e-14 30_[-1(8.73e-10)]_9_[+3(9.87e-12)]_\ 4 chrXIII:626081-627077 1.91e-01 100 chrXIII:650787-651283 7.52e-01 100 chrXIII:651546-652956 9.82e-01 100 chrXIII:731946-733460 2.50e-01 100 chrXIII:747696-748296 4.58e-01 100 chrXIII:754452-755300 3.16e-02 15_[+2(4.37e-05)]_56 chrXIII:761479-763125 6.15e-01 100 chrXIII:768159-768458 3.40e-01 100 chrXIII:807930-808558 1.83e-06 53_[-1(1.40e-10)]_18 chrXIII:837685-838251 8.78e-14 16_[-3(1.99e-12)]_23_[+1(1.81e-08)]_\ 4 chrXIII:861163-861396 2.47e-01 100 chrXIII:872700-872916 1.81e-01 100 chrXIII:887098-889065 5.07e-01 100 chrXIV:61576-64558 5.57e-01 100 chrXIV:88904-90100 4.18e-01 100 chrXIV:96037-96512 1.66e-12 18_[-1(3.39e-10)]_3_[-2(1.96e-09)]_\ 21 chrXIV:102573-103239 6.21e-01 100 chrXIV:104609-105291 3.39e-01 100 chrXIV:169413-169952 1.23e-01 57_[-2(4.84e-05)]_14 chrXIV:173535-174686 6.99e-01 100 chrXIV:217329-217585 5.28e-01 100 chrXIV:241359-241762 2.77e-01 100 chrXIV:302640-303805 4.94e-01 100 chrXIV:330407-331648 2.98e-01 100 chrXIV:374615-375232 1.91e-10 4_[+2(1.68e-08)]_22_[+1(2.35e-09)]_\ 16 chrXIV:442817-444067 2.80e-01 100 chrXIV:444209-444823 4.44e-02 100 chrXIV:495186-495790 1.55e-01 100 chrXIV:499165-500747 6.61e-01 100 chrXIV:518793-519141 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chrXV:228097-228586 7.50e-10 45_[-3(1.09e-13)]_27 chrXV:252874-254718 9.04e-01 100 chrXV:274455-275003 1.39e-07 2_[+2(8.60e-08)]_32_[+1(6.76e-07)]_\ 8 chrXV:281925-282558 1.21e-08 12_[+1(4.20e-12)]_59 chrXV:287919-288412 9.18e-01 100 chrXV:300848-301492 2.88e-07 47_[+1(3.58e-11)]_24 chrXV:340124-340746 9.04e-01 100 chrXV:353836-354306 9.38e-11 21_[-1(4.36e-09)]_4_[-2(3.22e-08)]_\ 17 chrXV:424359-424745 5.07e-01 100 chrXV:438393-439080 8.16e-06 21_[+1(8.73e-10)]_50 chrXV:444613-446173 1.23e-01 100 chrXV:464273-464803 5.39e-07 32_[+1(3.58e-11)]_39 chrXV:487428-487818 8.10e-01 100 chrXV:505108-505499 6.17e-01 100 chrXV:571601-572140 9.68e-01 100 chrXV:594110-594679 2.56e-13 11_[-1(4.95e-12)]_3_[-2(2.10e-08)]_\ 28 chrXV:619190-624452 3.82e-01 100 chrXV:639189-639453 9.75e-01 100 chrXV:663387-664167 5.84e-01 100 chrXV:671051-671337 3.42e-01 100 chrXV:678008-679870 5.26e-01 100 chrXV:710118-710475 6.44e-01 100 chrXV:779689-780954 3.49e-01 100 chrXV:832236-832843 8.15e-01 100 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chrXVI:404553-408277 7.85e-01 100 chrXVI:425153-425486 1.25e-01 100 chrXVI:435622-436224 1.51e-08 21_[-1(5.43e-08)]_4_[-2(6.49e-08)]_\ 17 chrXVI:520011-520698 5.14e-02 100 chrXVI:559842-560298 7.51e-01 100 chrXVI:572044-572597 1.66e-11 6_[+2(7.29e-07)]_3_[+1(4.20e-12)]_\ 33 chrXVI:575242-575403 9.21e-01 100 chrXVI:581860-582450 3.70e-01 100 chrXVI:622279-622849 8.37e-05 27_[-1(1.15e-08)]_44 chrXVI:645446-645738 4.45e-02 29_[+3(3.68e-05)]_43 chrXVI:689361-689864 4.60e-11 11_[+2(3.57e-08)]_13_[+1(8.70e-08)]_\ 18 chrXVI:692763-695010 4.18e-01 100 chrXVI:699814-700639 3.67e-01 100 chrXVI:701318-701462 1.03e-02 100 chrXVI:701874-702324 9.98e-01 100 chrXVI:718406-719527 5.72e-02 100 chrXVI:731910-732329 3.21e-01 100 chrXVI:744068-744602 2.75e-08 6_[+2(4.46e-07)]_4_[+1(3.60e-08)]_\ 32 chrXVI:768939-769480 6.84e-06 49_[-1(8.73e-10)]_22 chrXVI:775632-776078 5.17e-01 100 chrXVI:794457-794839 8.94e-01 100 chrXVI:810570-811196 9.94e-01 100 chrXVI:819296-819994 1.52e-01 100 chrXVI:821621-822183 7.72e-01 100 chrXVI:856724-857144 7.99e-14 26_[+2(1.03e-11)]_4_[+1(1.37e-09)]_\ 12 chrXVI:860107-860703 1.45e-11 31_[+2(7.29e-07)]_3_[+1(4.20e-12)]_\ 8 chrXVI:879648-880579 9.98e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************