Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.048984 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.064624 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.08188 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.013218 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.064132 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background Finished invoke: name: bg status: 0 time: 0.015041 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 992.2507 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/seqs-shuffled Finished invoke: name: dreme status: 0 time: 47.155142 Invoking: centrimo -seqlen 431 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.396519 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.522515 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background -primary AYCGDRRGGTCMBSGGTTCGAYYCCSVGH /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.475518 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background -primary KTGGCCBAGTKGKTWRAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.426401 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background -primary SAAARCSKRAWGTGATARCCRYTACACTAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.319305 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background -primary AAAAAAAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.449207 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background -primary CGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.2335 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background -primary CACGGYG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.259706 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background -primary SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.461582 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background -primary ATGGCAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.350447 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background -primary ATGTAYGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.23379 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background --motif AYCGDRRGGTCMBSGGTTCGAYYCCSVGH /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa Finished invoke: name: fimo1 status: 0 time: 0.418836 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background --motif KTGGCCBAGTKGKTWRAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa Finished invoke: name: fimo2 status: 0 time: 0.390717 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background --motif SAAARCSKRAWGTGATARCCRYTACACTAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa Finished invoke: name: fimo3 status: 0 time: 0.403054 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background --motif AAAAAAAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa Finished invoke: name: fimo4 status: 0 time: 0.301761 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background --motif CGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa Finished invoke: name: fimo5 status: 0 time: 0.267974 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background --motif CACGGYG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa Finished invoke: name: fimo6 status: 0 time: 0.269883 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background --motif SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa Finished invoke: name: fimo7 status: 0 time: 0.263953 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background --motif ATGGCAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa Finished invoke: name: fimo8 status: 0 time: 0.281263 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background --motif ATGTAYGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/AWRI1631--YAP6.fa Finished invoke: name: fimo9 status: 0 time: 0.288561 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/summary.tsv Finished invoke: name: summary status: 0 time: 0.204416 Done