******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:347416-347923 1.0000 100 chrVIII:74768-76265 1.0000 100 chrXIV:783517-784322 1.0000 100 chrVI:226408-227077 1.0000 100 chrXI:140698-141487 1.0000 100 chrI:166173-166630 1.0000 100 chrIV:1344701-1345803 1.0000 100 chrXVI:821647-822279 1.0000 100 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1.0000 100 chrIV:465193-465732 1.0000 100 chrXIII:586402-586898 1.0000 100 chrVII:609320-610098 1.0000 100 chrVI:101158-101550 1.0000 100 chrXI:514029-514488 1.0000 100 chrVIII:451219-453099 1.0000 100 chrIII:67122-68326 1.0000 100 chrXV:866529-868121 1.0000 100 chrV:221481-221791 1.0000 100 chrXV:841541-842172 1.0000 100 chrVIII:466829-467287 1.0000 100 chrVII:110373-110780 1.0000 100 chrXI:617631-618443 1.0000 100 chrVII:702881-704089 1.0000 100 chrV:130831-131385 1.0000 100 chrIX:127429-130193 1.0000 100 chrIV:599736-600242 1.0000 100 chrII:167561-169647 1.0000 100 chrIV:1352211-1353446 1.0000 100 chrV:66622-69696 1.0000 100 chrXII:424056-424561 1.0000 100 chrIV:83434-83806 1.0000 100 chrXV:226457-226878 1.0000 100 chrX:391806-391906 1.0000 100 chrVI:131207-131646 1.0000 100 chrVIII:455034-456399 1.0000 100 chrXVI:572032-572570 1.0000 100 chrXII:728321-728562 1.0000 100 chrXV:161142-161910 1.0000 100 chrXIV:88922-89807 1.0000 100 chrXII:1013507-1013707 1.0000 100 chrVIII:411007-411756 1.0000 100 chrXV:253809-254736 1.0000 100 chrXII:720612-721362 1.0000 100 chrX:90050-90150 1.0000 100 chrIV:1269920-1271071 1.0000 100 chrXIII:420313-420871 1.0000 100 chrXII:605155-605602 1.0000 100 chrXIV:771859-772409 1.0000 100 chrXV:892169-892523 1.0000 100 chrII:591594-591800 1.0000 100 chrVII:794221-794558 1.0000 100 chrXVI:794440-796119 1.0000 100 chrIX:254229-254550 1.0000 100 chrIV:929257-930320 1.0000 100 chrVII:397980-398226 1.0000 100 chrVI:180655-181246 1.0000 100 chrVII:288-955 1.0000 100 chrXIII:161891-162694 1.0000 100 chrV:51769-53233 1.0000 100 chrIX:393938-396040 1.0000 100 chrXVI:822642-824294 1.0000 100 chrXI:618725-619273 1.0000 100 chrII:301134-301849 1.0000 100 chrXV:384554-385090 1.0000 100 chrVII:319231-320144 1.0000 100 chrXII:592361-592833 1.0000 100 chrXI:313210-314008 1.0000 100 chrV:434395-435157 1.0000 100 chrXV:464287-464796 1.0000 100 chrVIII:381467-382457 1.0000 100 chrXIV:585483-586549 1.0000 100 chrIX:338739-339050 1.0000 100 chrX:204553-204653 1.0000 100 chrIII:163448-163895 1.0000 100 chrXIII:887001-889074 1.0000 100 chrXIV:715981-716634 1.0000 100 chrX:607904-608004 1.0000 100 chrII:326576-327083 1.0000 100 chrIV:980728-981216 1.0000 100 chrIX:23446-25278 1.0000 100 chrX:605426-605526 1.0000 100 chrIV:125323-125771 1.0000 100 chrV:135184-136184 1.0000 100 chrIV:1300204-1301341 1.0000 100 chrXV:391505-391955 1.0000 100 chrXII:673496-675157 1.0000 100 chrXIII:296731-298890 1.0000 100 chrX:453341-453441 1.0000 100 chrX:18814-18914 1.0000 100 chrXII:1051914-1052208 1.0000 100 chrIV:411053-411667 1.0000 100 chrII:642851-643244 1.0000 100 chrVII:185491-185892 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.298 C 0.202 G 0.202 T 0.298 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP6/background): A 0.306 C 0.194 G 0.194 T 0.306 ******************************************************************************** ******************************************************************************** MOTIF AYCGDRRGGTCMBSGGTTCGAYYCCSVGH MEME-1 width = 29 sites = 83 llr = 1738 E-value = 8.6e-390 ******************************************************************************** -------------------------------------------------------------------------------- Motif AYCGDRRGGTCMBSGGTTCGAYYCCSVGH MEME-1 Description -------------------------------------------------------------------------------- Simplified A 8::2246132:3::2::::1a1::::2:3 pos.-specific C 13721::1:19543::::a::25a76424 probability G :22544377::2467a:::9:2:::445: matrix T 15:241:1:71:2:::aa:::45:2::33 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * ****** * Relative 1.4 * * * ****** * Entropy 1.2 * * * ****** * * (30.2 bits) 0.9 * * ** * ******** **** 0.7 * * *** * ******** ***** 0.5 *** **************** ******* 0.2 ***************************** 0.0 ----------------------------- Multilevel ATCGGGAGGTCCCGGGTTCGATCCCCCGC consensus CGCTAG A AGCA CT TGGTA sequence A T A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCGDRRGGTCMBSGGTTCGAYYCCSVGH MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXIV:631563-632143 - 50 2.07e-14 TCGCTTAGGG TGCGGGAGGTCCCGGGTTCGAGTCCCGGC TCGCCCCCAT chrIII:123381-123812 - 38 2.07e-14 TCGCTTAGGG TGCGGGAGGTCCCGGGTTCGAGTCCCGGC TCGCCCCACA chrIV:1016975-1017508 - 23 1.64e-13 TCACGTTCTC ACCGTGGAGACCGGGGTTCGACTCCCCGC TTCGGAGTTT chrXVI:572032-572570 + 53 1.95e-13 CAACGTTGCC ATCGTTGGGCCCCCGGTTCGATTCCGGGC TTGCGCAATT chrXV:226457-226878 - 1 1.95e-13 CAACGTTGCC ATCGTTGGGCCCCCGGTTCGATTCCGGGC chrIV:83434-83806 + 13 1.95e-13 CAACGTTGCC ATCGTTGGGCCCCCGGTTCGATTCCGGGC TTGCGCAAGT chrXVI:860154-860698 + 38 1.95e-13 CAACGTTGCC ATCGTTGGGCCCCCGGTTCGATTCCGGGC TTGCGCAGAT chrX:531581-531681 + 30 1.95e-13 CAACGTTGCC ATCGTTGGGCCCCCGGTTCGATTCCGGGC TTGCGCAGTT chrX:396563-396663 - 27 1.95e-13 CAACGTTGCC ATCGTTGGGCCCCCGGTTCGATTCCGGGC TTGCGCATTT chrVII:845459-846005 + 2 1.95e-13 C ATCGTTGGGCCCCCGGTTCGATTCCGGGC TTGCGCAATG chrIV:992691-993037 + 53 1.95e-13 CAACGTTGCC ATCGTTGGGCCCCCGGTTCGATTCCGGGC TTGCGCACTT chrVII:541715-542156 + 1 6.16e-13 . ACCGTGGAGACCGGGGTTCGACTCCCCGT ATCGGAGTGT chrV:354694-355203 + 72 6.16e-13 TCACGCTTTC ACCGTGGAGACCGGGGTTCGACTCCCCGT chrII:644966-645429 + 56 6.16e-13 TCACGCTTTC ACCGTGGAGACCGGGGTTCGACTCCCCGT ATCGGAGTTA chrXVI:210005-210471 - 11 6.16e-13 TCACGCTTTC ACCGTGGAGACCGGGGTTCGACTCCCCGT ATCGGAGTTT chrVII:401444-401606 - 59 6.16e-13 TCACGCTTTC ACCGTGGAGACCGGGGTTCGACTCCCCGT ATCGGAGTAT chrV:487169-487585 - 11 6.16e-13 TCACGCTTTC ACCGTGGAGACCGGGGTTCGACTCCCCGT ATCGGAGTAT chrIII:82196-82698 - 72 6.16e-13 . ACCGTGGAGACCGGGGTTCGACTCCCCGT ATCGGAGTTT chrXIII:290586-291140 + 24 6.16e-13 TCACGCTTTC ACCGTGGAGACCGGGGTTCGACTCCCCGT ATCGGAGTCT chrV:176901-177430 + 20 6.16e-13 TCACGCTTTC ACCGTGGAGACCGGGGTTCGACTCCCCGT ATCGGAGTAC chrXII:1051914-1052208 - 67 6.22e-12 TAATA ACGCGGGGATCAGCGGTTCGATCCCGCTA GAGACCATTA chrXVI:880034-880575 - 49 6.22e-12 CGTGCTAATA ACGCGGGGATCAGCGGTTCGATCCCGCTA GAGACCATTT chrXIV:569656-570162 - 15 6.22e-12 CGTGCTAATA ACGCGGGGATCAGCGGTTCGATCCCGCTA GAGACCATTC chrII:197272-197826 + 33 6.22e-12 CGTGCTAATA ACGCGGGGATCAGCGGTTCGATCCCGCTA GAGACCATTT chrV:443055-443376 - 44 6.22e-12 CGTGCTAATA ACGCGGGGATCAGCGGTTCGATCCCGCTA GAGACCATAT chrIX:183290-183696 - 4 6.22e-12 CGTGCTAATA ACGCGGGGATCAGCGGTTCGATCCCGCTA GAG chrXII:875205-875652 + 58 1.05e-11 AAGCAAGGAT ACCGAAATGTCAGGGGTTCGAGCCCCCTA TGAGGAGTTC chrIV:359352-359889 + 67 1.05e-11 AAGCAAGGAT ACCGAAATGTCAGGGGTTCGAGCCCCCTA TGAGG chrVII:115340-115721 + 68 1.05e-11 AAGCAAGGAT ACCGAAATGTCAGGGGTTCGAGCCCCCTA TGAG chrXVI:768985-769476 - 34 1.05e-11 AAGCAAGGAT ACCGAAATGTCAGGGGTTCGAGCCCCCTA TGAGGAGTTC chrXI:578755-579328 + 34 1.05e-11 AAGCAAGGAT ACCGAAATGTCAGGGGTTCGAGCCCCCTA TGAGGAGTTC chrIII:168126-168546 - 22 3.16e-11 TTCGGTTTTG ATCCGGACAACCCCGGTTCGAATCCGGGT AGGACCTTTT chrXIII:480411-480805 - 70 3.56e-11 TA ATCATAAGGTTAGGGGTTCGAGCCCCCTA CAGGGCTTCT chrV:435621-435995 - 1 3.56e-11 ATGACTCTTA ATCATAAGGTTAGGGGTTCGAGCCCCCTA chrX:414791-414891 + 45 3.56e-11 ATGACTCTTA ATCATAAGGTTAGGGGTTCGAGCCCCCTA CAGGGCTAAT chrIX:300026-300506 - 19 3.56e-11 ATGACTCTTA ATCATAAGGTTAGGGGTTCGAGCCCCCTA CAGGGCTATC chrVI:226408-227077 - 3 3.56e-11 ATGACTCTTA ATCATAAGGTTAGGGGTTCGAGCCCCCTA CA chrV:130831-131385 - 31 5.63e-11 TTCGGTTTTG ATCCGAACAACCCCGGTTCGAATCCGGGT AAGACCTATT chrXII:214702-215062 - 58 7.04e-11 TTCCCTTGCA AGGAAGAGGTCATCGGTTCGATTCCGGTT GCGTCCATTT chrXV:464287-464796 + 25 7.86e-11 AGACAAAGCA TGCGAGAGGCCCTGGGTTCAATTCCCAGC TCGCCCCTTT chrIV:1075288-1075735 - 18 7.86e-11 TGCCTTCACA CGGCAAAGGTCCCGAGTTCGATCCTCGGT TGGAACATTT chrVIII:475486-475906 - 67 7.86e-11 TCACA CGGCAAAGGTCCCGAGTTCGATCCTCGGT TGGAACATTT chrXIII:195935-196299 - 8 7.86e-11 AGACAAAGCA TGCGAGAGGCCCTGGGTTCAATTCCCAGC TCGCCCC chrXIII:420313-420871 - 53 1.50e-10 CTGCTTAACA CGCAGAACGTCCCCAGTTCGATCCTGGGC GAAATCATTT chrXIII:586402-586898 - 43 1.50e-10 CTGCTTAACA CGCAGAACGTCCCCAGTTCGATCCTGGGC GAAATCATTT chrXI:307930-308419 - 27 1.50e-10 CTGCTTAACA CGCAGAACGTCCCCAGTTCGATCCTGGGC GAAATCAATT chrXV:663527-664107 - 52 1.50e-10 CTGCTTAACA CGCAGAACGTCCCCAGTTCGATCCTGGGC GAAATCATTT chrXI:162306-162741 - 21 1.84e-10 CTGACTTCTA ATCAGAAGATTATGGGTTCGACCCCCATC GTGAGTGTTT chrVII:736201-736612 + 20 1.84e-10 CTGACTTCTA ATCAGAAGATTATGGGTTCGACCCCCATC GTGAGTGTTG chrVII:440474-440994 - 39 2.04e-10 CGGTCAAGTT ATCTGGAGGTCCTGTGTTCGATCCACAGA ATTCGCATAA chrVIII:358284-358770 - 8 2.04e-10 CGGTCAAGTT ATCTGGAGGTCCTGTGTTCGATCCACAGA ATTCGCA chrIV:1095163-1095656 - 18 2.04e-10 TGGTCAAGAT ATCTGGAGGTCCTGTGTTCGATCCACAGA GTTCGCATTT chrXVI:622282-622851 - 31 2.04e-10 CGGTCAAGTT ATCTGGAGGTCCTGTGTTCGATCCACAGA ATTCGCATTT chrXIV:96066-96506 - 12 2.26e-10 CCACCCTTCC AAGGTGGGGACACGGGTTCGATTCTCGTA CCGCTCAAAT chrVII:779401-779904 + 50 2.26e-10 CCACCCTTCC AAGGTGGGGACACGGGTTCGATTCTCGTA CCGCTCAAGA chrXIII:808051-808549 - 3 2.50e-10 TTCGGTTCTG ATCCGAACAACCCCAGTTCGAATCCGGGT GG chrII:326576-327083 - 20 3.05e-10 CGCCTTTACA CGGCGAAGATCCCGAGTTCGAACCTCGGT TGGATCAAAC chrIV:1256841-1257284 - 3 3.36e-10 CATGCTTCCC AAGCATGGGGCCCGGGTTCGATTCCCGGC TT chrIV:1175618-1176072 + 71 4.09e-10 CAGTCTCATA ATCTGAAGGTCGAGAGTTCGAACCTCCCC T chrXV:976278-976728 + 5 4.09e-10 CATA ATCTGAAGGTCGAGAGTTCGAACCTCCCC TGGAGCAATA chrXIII:572640-573152 - 44 4.09e-10 CAGTCTCATA ATCTGAAGGTCGAGAGTTCGAACCTCCCC TGGAGCACAT chrVII:774135-774624 + 57 8.65e-10 TCCCTTAGCA TGGGAGAGGTCTCCGGTTCGATTCCGGAC TCGTCCAAAT chrXIII:321006-321320 - 41 8.65e-10 TCCCTTAGCA TGGGAGAGGTCTCCGGTTCGATTCCGGAC TCGTCCATTT chrXI:219758-220099 + 54 8.65e-10 TCCCTTAGCA TGGGAGAGGTCTCCGGTTCGATTCCGGAC TCGTCCAATC chrIV:946148-946592 + 45 1.04e-09 TCACTACGAA ATCTTGAGATCGGGCGTTCGACTCGCCCC CGGGAGATTT chrXIII:837712-838213 + 69 1.04e-09 CCACTACGAA ATCTTGAGATCGGGCGTTCGACTCGCCCC CGG chrVI:167283-167714 + 42 1.04e-09 CCACTACGAA ATCTTGAGATCGGGCGTTCGACTCGCCCC CGGGAGATAT chrII:266195-266665 + 35 3.14e-09 CACACTAGTA ATGTGGAGATCATCGGTTCAAATCCGATT GGAAGCATTT chrXVI:338483-339283 - 22 4.33e-09 AGGGCTCATA ACCCTGATGTCCTCGGATCGAAACCGAGC GGCGCTAAAT chrIII:149729-150176 + 54 4.33e-09 AGGGCTCATA ACCCTGATGTCCTCGGATCGAAACCGAGC GGCGCTATTA chrIII:127584-127893 + 66 4.68e-09 GCGACTGTTA ATCGCAAGATCGTGAGTTCAACCCTCACT GGGGTC chrXVI:810585-810848 + 48 4.68e-09 GCGACTGTTA ATCGCAAGATCGTGAGTTCAACCCTCACT GGGGTCGTAT chrVII:730965-731430 + 28 4.68e-09 GCGACTGTTA ATCGCAAGATCGTGAGTTCAACCCTCACT GGGGTCGTTT chrXIV:632417-632833 + 62 4.68e-09 GCGACTGTTA ATCGCAAGATCGTGAGTTCAACCCTCACT GGGGTCGTTT chrIV:884273-884620 + 62 9.28e-09 TTTAAAAGCA ACGCGACCGTCGTGGGTTCAAACCCCACC TCGAGCACTT chrII:642851-643244 - 17 1.07e-08 CAGATTGCAA ATCTGTTGGTCCTTAGTTCGATCCTGAGT GCGAGCTTCT chrXVI:435651-436195 - 27 1.07e-08 CAGATTGCAA ATCTGTTGGTCCTTAGTTCGATCCTGAGT GCGAGCTTTC chrVIII:466829-467287 + 18 1.24e-08 TGCACTTGTA ATGCAAAGGTCGCTAGTTCAATTCTGGCA GGTGGCATTA chrV:492224-492555 - 20 1.43e-08 CTGGCTACGA ACCAGAAGATTCCAGGTTCAAGTCCTGGC GGGGAAGGAT chrIV:619718-620210 - 62 1.43e-08 CTGGCTACGA ACCAGAAGATTCCAGGTTCAAGTCCTGGC GGGGAAGATT chrXVI:744075-744541 + 62 3.93e-08 TGCACTTGTA ATGCAAAGGTCGTTAGTTCAATTCTGACA GGTGGCAAAA chrVII:483288-483715 + 28 1.10e-07 TGCGGTAATT ATCGCCGGATCTCCGCTTCGAGACCGGGT TTGTTTTCAA chrII:347416-347923 - 41 3.23e-07 AAAAAATATT ACTGAAGGATGCGAGGTTCGAACTCGCGC GGACAACCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCGDRRGGTCMBSGGTTCGAYYCCSVGH MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631563-632143 2.1e-14 49_[-1]_22 chrIII:123381-123812 2.1e-14 37_[-1]_34 chrIV:1016975-1017508 1.6e-13 22_[-1]_49 chrXVI:572032-572570 1.9e-13 52_[+1]_19 chrXV:226457-226878 1.9e-13 [-1]_71 chrIV:83434-83806 1.9e-13 12_[+1]_59 chrXVI:860154-860698 1.9e-13 37_[+1]_34 chrX:531581-531681 1.9e-13 29_[+1]_42 chrX:396563-396663 1.9e-13 26_[-1]_45 chrVII:845459-846005 1.9e-13 1_[+1]_70 chrIV:992691-993037 1.9e-13 52_[+1]_19 chrVII:541715-542156 6.2e-13 [+1]_71 chrV:354694-355203 6.2e-13 71_[+1] chrII:644966-645429 6.2e-13 55_[+1]_16 chrXVI:210005-210471 6.2e-13 10_[-1]_61 chrVII:401444-401606 6.2e-13 58_[-1]_13 chrV:487169-487585 6.2e-13 10_[-1]_61 chrIII:82196-82698 6.2e-13 71_[-1] chrXIII:290586-291140 6.2e-13 23_[+1]_48 chrV:176901-177430 6.2e-13 19_[+1]_52 chrXII:1051914-1052208 6.2e-12 66_[-1]_5 chrXVI:880034-880575 6.2e-12 48_[-1]_23 chrXIV:569656-570162 6.2e-12 14_[-1]_57 chrII:197272-197826 6.2e-12 32_[+1]_39 chrV:443055-443376 6.2e-12 43_[-1]_28 chrIX:183290-183696 6.2e-12 3_[-1]_68 chrXII:875205-875652 1e-11 57_[+1]_14 chrIV:359352-359889 1e-11 66_[+1]_5 chrVII:115340-115721 1e-11 67_[+1]_4 chrXVI:768985-769476 1e-11 33_[-1]_38 chrXI:578755-579328 1e-11 33_[+1]_38 chrIII:168126-168546 3.2e-11 21_[-1]_50 chrXIII:480411-480805 3.6e-11 69_[-1]_2 chrV:435621-435995 3.6e-11 [-1]_71 chrX:414791-414891 3.6e-11 44_[+1]_27 chrIX:300026-300506 3.6e-11 18_[-1]_53 chrVI:226408-227077 3.6e-11 2_[-1]_69 chrV:130831-131385 5.6e-11 30_[-1]_41 chrXII:214702-215062 7e-11 57_[-1]_14 chrXV:464287-464796 7.9e-11 24_[+1]_47 chrIV:1075288-1075735 7.9e-11 17_[-1]_54 chrVIII:475486-475906 7.9e-11 66_[-1]_5 chrXIII:195935-196299 7.9e-11 7_[-1]_64 chrXIII:420313-420871 1.5e-10 52_[-1]_19 chrXIII:586402-586898 1.5e-10 42_[-1]_29 chrXI:307930-308419 1.5e-10 26_[-1]_45 chrXV:663527-664107 1.5e-10 51_[-1]_20 chrXI:162306-162741 1.8e-10 20_[-1]_51 chrVII:736201-736612 1.8e-10 19_[+1]_52 chrVII:440474-440994 2e-10 38_[-1]_33 chrVIII:358284-358770 2e-10 7_[-1]_64 chrIV:1095163-1095656 2e-10 17_[-1]_54 chrXVI:622282-622851 2e-10 30_[-1]_41 chrXIV:96066-96506 2.3e-10 11_[-1]_60 chrVII:779401-779904 2.3e-10 49_[+1]_22 chrXIII:808051-808549 2.5e-10 2_[-1]_69 chrII:326576-327083 3e-10 19_[-1]_52 chrIV:1256841-1257284 3.4e-10 2_[-1]_69 chrIV:1175618-1176072 4.1e-10 70_[+1]_1 chrXV:976278-976728 4.1e-10 4_[+1]_67 chrXIII:572640-573152 4.1e-10 43_[-1]_28 chrVII:774135-774624 8.6e-10 56_[+1]_15 chrXIII:321006-321320 8.6e-10 40_[-1]_31 chrXI:219758-220099 8.6e-10 53_[+1]_18 chrIV:946148-946592 1e-09 44_[+1]_27 chrXIII:837712-838213 1e-09 68_[+1]_3 chrVI:167283-167714 1e-09 41_[+1]_30 chrII:266195-266665 3.1e-09 34_[+1]_37 chrXVI:338483-339283 4.3e-09 21_[-1]_50 chrIII:149729-150176 4.3e-09 53_[+1]_18 chrIII:127584-127893 4.7e-09 65_[+1]_6 chrXVI:810585-810848 4.7e-09 47_[+1]_24 chrVII:730965-731430 4.7e-09 27_[+1]_44 chrXIV:632417-632833 4.7e-09 61_[+1]_10 chrIV:884273-884620 9.3e-09 61_[+1]_10 chrII:642851-643244 1.1e-08 16_[-1]_55 chrXVI:435651-436195 1.1e-08 26_[-1]_45 chrVIII:466829-467287 1.2e-08 17_[+1]_54 chrV:492224-492555 1.4e-08 19_[-1]_52 chrIV:619718-620210 1.4e-08 61_[-1]_10 chrXVI:744075-744541 3.9e-08 61_[+1]_10 chrVII:483288-483715 1.1e-07 27_[+1]_44 chrII:347416-347923 3.2e-07 40_[-1]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCGDRRGGTCMBSGGTTCGAYYCCSVGH MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AYCGDRRGGTCMBSGGTTCGAYYCCSVGH width=29 seqs=83 chrXIV:631563-632143 ( 50) TGCGGGAGGTCCCGGGTTCGAGTCCCGGC 1 chrIII:123381-123812 ( 38) TGCGGGAGGTCCCGGGTTCGAGTCCCGGC 1 chrIV:1016975-1017508 ( 23) ACCGTGGAGACCGGGGTTCGACTCCCCGC 1 chrXVI:572032-572570 ( 53) ATCGTTGGGCCCCCGGTTCGATTCCGGGC 1 chrXV:226457-226878 ( 1) ATCGTTGGGCCCCCGGTTCGATTCCGGGC 1 chrIV:83434-83806 ( 13) ATCGTTGGGCCCCCGGTTCGATTCCGGGC 1 chrXVI:860154-860698 ( 38) ATCGTTGGGCCCCCGGTTCGATTCCGGGC 1 chrX:531581-531681 ( 30) ATCGTTGGGCCCCCGGTTCGATTCCGGGC 1 chrX:396563-396663 ( 27) ATCGTTGGGCCCCCGGTTCGATTCCGGGC 1 chrVII:845459-846005 ( 2) ATCGTTGGGCCCCCGGTTCGATTCCGGGC 1 chrIV:992691-993037 ( 53) ATCGTTGGGCCCCCGGTTCGATTCCGGGC 1 chrVII:541715-542156 ( 1) ACCGTGGAGACCGGGGTTCGACTCCCCGT 1 chrV:354694-355203 ( 72) ACCGTGGAGACCGGGGTTCGACTCCCCGT 1 chrII:644966-645429 ( 56) ACCGTGGAGACCGGGGTTCGACTCCCCGT 1 chrXVI:210005-210471 ( 11) ACCGTGGAGACCGGGGTTCGACTCCCCGT 1 chrVII:401444-401606 ( 59) ACCGTGGAGACCGGGGTTCGACTCCCCGT 1 chrV:487169-487585 ( 11) ACCGTGGAGACCGGGGTTCGACTCCCCGT 1 chrIII:82196-82698 ( 72) ACCGTGGAGACCGGGGTTCGACTCCCCGT 1 chrXIII:290586-291140 ( 24) ACCGTGGAGACCGGGGTTCGACTCCCCGT 1 chrV:176901-177430 ( 20) ACCGTGGAGACCGGGGTTCGACTCCCCGT 1 chrXII:1051914-1052208 ( 67) ACGCGGGGATCAGCGGTTCGATCCCGCTA 1 chrXVI:880034-880575 ( 49) ACGCGGGGATCAGCGGTTCGATCCCGCTA 1 chrXIV:569656-570162 ( 15) ACGCGGGGATCAGCGGTTCGATCCCGCTA 1 chrII:197272-197826 ( 33) ACGCGGGGATCAGCGGTTCGATCCCGCTA 1 chrV:443055-443376 ( 44) ACGCGGGGATCAGCGGTTCGATCCCGCTA 1 chrIX:183290-183696 ( 4) ACGCGGGGATCAGCGGTTCGATCCCGCTA 1 chrXII:875205-875652 ( 58) ACCGAAATGTCAGGGGTTCGAGCCCCCTA 1 chrIV:359352-359889 ( 67) ACCGAAATGTCAGGGGTTCGAGCCCCCTA 1 chrVII:115340-115721 ( 68) ACCGAAATGTCAGGGGTTCGAGCCCCCTA 1 chrXVI:768985-769476 ( 34) ACCGAAATGTCAGGGGTTCGAGCCCCCTA 1 chrXI:578755-579328 ( 34) ACCGAAATGTCAGGGGTTCGAGCCCCCTA 1 chrIII:168126-168546 ( 22) ATCCGGACAACCCCGGTTCGAATCCGGGT 1 chrXIII:480411-480805 ( 70) ATCATAAGGTTAGGGGTTCGAGCCCCCTA 1 chrV:435621-435995 ( 1) ATCATAAGGTTAGGGGTTCGAGCCCCCTA 1 chrX:414791-414891 ( 45) ATCATAAGGTTAGGGGTTCGAGCCCCCTA 1 chrIX:300026-300506 ( 19) ATCATAAGGTTAGGGGTTCGAGCCCCCTA 1 chrVI:226408-227077 ( 3) ATCATAAGGTTAGGGGTTCGAGCCCCCTA 1 chrV:130831-131385 ( 31) ATCCGAACAACCCCGGTTCGAATCCGGGT 1 chrXII:214702-215062 ( 58) AGGAAGAGGTCATCGGTTCGATTCCGGTT 1 chrXV:464287-464796 ( 25) TGCGAGAGGCCCTGGGTTCAATTCCCAGC 1 chrIV:1075288-1075735 ( 18) CGGCAAAGGTCCCGAGTTCGATCCTCGGT 1 chrVIII:475486-475906 ( 67) CGGCAAAGGTCCCGAGTTCGATCCTCGGT 1 chrXIII:195935-196299 ( 8) TGCGAGAGGCCCTGGGTTCAATTCCCAGC 1 chrXIII:420313-420871 ( 53) CGCAGAACGTCCCCAGTTCGATCCTGGGC 1 chrXIII:586402-586898 ( 43) CGCAGAACGTCCCCAGTTCGATCCTGGGC 1 chrXI:307930-308419 ( 27) CGCAGAACGTCCCCAGTTCGATCCTGGGC 1 chrXV:663527-664107 ( 52) CGCAGAACGTCCCCAGTTCGATCCTGGGC 1 chrXI:162306-162741 ( 21) ATCAGAAGATTATGGGTTCGACCCCCATC 1 chrVII:736201-736612 ( 20) ATCAGAAGATTATGGGTTCGACCCCCATC 1 chrVII:440474-440994 ( 39) ATCTGGAGGTCCTGTGTTCGATCCACAGA 1 chrVIII:358284-358770 ( 8) ATCTGGAGGTCCTGTGTTCGATCCACAGA 1 chrIV:1095163-1095656 ( 18) ATCTGGAGGTCCTGTGTTCGATCCACAGA 1 chrXVI:622282-622851 ( 31) ATCTGGAGGTCCTGTGTTCGATCCACAGA 1 chrXIV:96066-96506 ( 12) AAGGTGGGGACACGGGTTCGATTCTCGTA 1 chrVII:779401-779904 ( 50) AAGGTGGGGACACGGGTTCGATTCTCGTA 1 chrXIII:808051-808549 ( 3) ATCCGAACAACCCCAGTTCGAATCCGGGT 1 chrII:326576-327083 ( 20) CGGCGAAGATCCCGAGTTCGAACCTCGGT 1 chrIV:1256841-1257284 ( 3) AAGCATGGGGCCCGGGTTCGATTCCCGGC 1 chrIV:1175618-1176072 ( 71) ATCTGAAGGTCGAGAGTTCGAACCTCCCC 1 chrXV:976278-976728 ( 5) ATCTGAAGGTCGAGAGTTCGAACCTCCCC 1 chrXIII:572640-573152 ( 44) ATCTGAAGGTCGAGAGTTCGAACCTCCCC 1 chrVII:774135-774624 ( 57) TGGGAGAGGTCTCCGGTTCGATTCCGGAC 1 chrXIII:321006-321320 ( 41) TGGGAGAGGTCTCCGGTTCGATTCCGGAC 1 chrXI:219758-220099 ( 54) TGGGAGAGGTCTCCGGTTCGATTCCGGAC 1 chrIV:946148-946592 ( 45) ATCTTGAGATCGGGCGTTCGACTCGCCCC 1 chrXIII:837712-838213 ( 69) ATCTTGAGATCGGGCGTTCGACTCGCCCC 1 chrVI:167283-167714 ( 42) ATCTTGAGATCGGGCGTTCGACTCGCCCC 1 chrII:266195-266665 ( 35) ATGTGGAGATCATCGGTTCAAATCCGATT 1 chrXVI:338483-339283 ( 22) ACCCTGATGTCCTCGGATCGAAACCGAGC 1 chrIII:149729-150176 ( 54) ACCCTGATGTCCTCGGATCGAAACCGAGC 1 chrIII:127584-127893 ( 66) ATCGCAAGATCGTGAGTTCAACCCTCACT 1 chrXVI:810585-810848 ( 48) ATCGCAAGATCGTGAGTTCAACCCTCACT 1 chrVII:730965-731430 ( 28) ATCGCAAGATCGTGAGTTCAACCCTCACT 1 chrXIV:632417-632833 ( 62) ATCGCAAGATCGTGAGTTCAACCCTCACT 1 chrIV:884273-884620 ( 62) ACGCGACCGTCGTGGGTTCAAACCCCACC 1 chrII:642851-643244 ( 17) ATCTGTTGGTCCTTAGTTCGATCCTGAGT 1 chrXVI:435651-436195 ( 27) ATCTGTTGGTCCTTAGTTCGATCCTGAGT 1 chrVIII:466829-467287 ( 18) ATGCAAAGGTCGCTAGTTCAATTCTGGCA 1 chrV:492224-492555 ( 20) ACCAGAAGATTCCAGGTTCAAGTCCTGGC 1 chrIV:619718-620210 ( 62) ACCAGAAGATTCCAGGTTCAAGTCCTGGC 1 chrXVI:744075-744541 ( 62) ATGCAAAGGTCGTTAGTTCAATTCTGACA 1 chrVII:483288-483715 ( 28) ATCGCCGGATCTCCGCTTCGAGACCGGGT 1 chrII:347416-347923 ( 41) ACTGAAGGATGCGAGGTTCGAACTCGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCGDRRGGTCMBSGGTTCGAYYCCSVGH MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 9.99816 E= 8.6e-390 144 -120 -1302 -186 -308 75 -10 58 -1302 195 31 -466 -86 16 124 -97 -58 -169 95 24 42 -401 120 -121 100 -401 85 -367 -135 -101 185 -186 -8 -1302 187 -1302 -76 -69 -401 117 -1302 218 -401 -150 -21 145 -31 -267 -308 90 90 -35 -308 85 155 -267 -42 -242 183 -267 -1302 -401 235 -1302 -367 -1302 -1302 167 -1302 -1302 -1302 171 -1302 237 -1302 -1302 -108 -1302 214 -1302 171 -1302 -1302 -1302 -108 24 -10 54 -308 131 -1302 65 -1302 235 -1302 -466 -267 180 -242 -35 -1302 155 108 -367 -42 104 95 -1302 -308 -31 148 -21 -8 112 -1302 -8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCGDRRGGTCMBSGGTTCGAYYCCSVGH MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 83 E= 8.6e-390 0.831325 0.084337 0.000000 0.084337 0.036145 0.325301 0.180723 0.457831 0.000000 0.746988 0.240964 0.012048 0.168675 0.216867 0.457831 0.156627 0.204819 0.060241 0.373494 0.361446 0.409639 0.012048 0.445783 0.132530 0.614458 0.012048 0.349398 0.024096 0.120482 0.096386 0.698795 0.084337 0.289157 0.000000 0.710843 0.000000 0.180723 0.120482 0.012048 0.686747 0.000000 0.879518 0.012048 0.108434 0.265060 0.530120 0.156627 0.048193 0.036145 0.361446 0.361446 0.240964 0.036145 0.349398 0.566265 0.048193 0.228916 0.036145 0.686747 0.048193 0.000000 0.012048 0.987952 0.000000 0.024096 0.000000 0.000000 0.975904 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.144578 0.000000 0.855422 0.000000 1.000000 0.000000 0.000000 0.000000 0.144578 0.228916 0.180723 0.445783 0.036145 0.481928 0.000000 0.481928 0.000000 0.987952 0.000000 0.012048 0.048193 0.674699 0.036145 0.240964 0.000000 0.566265 0.409639 0.024096 0.228916 0.397590 0.373494 0.000000 0.036145 0.156627 0.542169 0.265060 0.289157 0.421687 0.000000 0.289157 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCGDRRGGTCMBSGGTTCGAYYCCSVGH MEME-1 regular expression -------------------------------------------------------------------------------- A[TC][CG][GC][GTA][GA][AG]G[GA]TC[CA][CGT][GC][GA]GTTCGA[TC][CT]C[CT][CG][CGA][GT][CAT] -------------------------------------------------------------------------------- Time 352.74 secs. ******************************************************************************** ******************************************************************************** MOTIF KTGGCCBAGTKGKTWRAGSS MEME-2 width = 20 sites = 60 llr = 960 E-value = 4.4e-148 ******************************************************************************** -------------------------------------------------------------------------------- Motif KTGGCCBAGTKGKTWRAGSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2:2:::1a2::::2666::: pos.-specific C ::::764:::2::1:12:65 probability G 5:8a:22:8:5a51:42835 matrix T 4a::333::a3:564:121: bits 2.4 * * 2.1 * * 1.9 * * 1.7 *** * * Relative 1.4 **** *** * * Entropy 1.2 **** *** * * * (23.1 bits) 0.9 **** *** ** *** 0.7 ***** *** ** ** *** 0.5 ****** ****** ** *** 0.2 ******************** 0.0 -------------------- Multilevel GTGGCCCAGTGGGTAAAGCC consensus T TTT T TATG TGG sequence G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGCCBAGTKGKTWRAGSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chrIV:1150726-1151186 - 10 8.08e-11 TTCAGTCCCA GTGGCCGAGTGGTTAAGGCG ATGCCTGCT chrXV:274487-274961 + 5 8.08e-11 CCCA GTGGCCGAGTGGTTAAGGCG ATGCCCTGCT chrXIV:602081-602545 + 55 2.29e-10 CAATGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIV:1305408-1305805 + 80 2.29e-10 TTAAGGCAAC TTGGCCGAGTGGTTAAGGCG A chrXIV:569656-570162 - 56 2.29e-10 CAGTGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrII:197272-197826 + 1 2.29e-10 . TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrX:523828-523928 - 23 2.29e-10 TAAAGGCAAC TTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIX:183290-183696 - 45 2.29e-10 TCCTGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXII:167799-168223 - 39 2.29e-10 ATATGGCAAC TTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXII:592361-592833 - 47 3.34e-10 CAATGGGAGT TTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrX:617719-617819 + 45 3.34e-10 CAATGGGAGT TTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXII:656842-657209 - 6 1.74e-09 AATTGGGCGT GTGGCGTAGTCGGTAGCGCG CTCCC chrVII:774135-774624 + 26 1.74e-09 AATTGGGCGT GTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXIII:321006-321320 - 81 1.74e-09 . GTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXI:219758-220099 + 23 1.74e-09 AATAGGGCGT GTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrX:424277-424377 - 45 2.02e-09 AGATGGAGGG TTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXII:962818-963266 - 38 2.02e-09 CGACGGAGGG TTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXV:353907-354294 - 38 7.45e-09 TACTGCTTCT ATGGCCAAGTTGGTAAGGCG CCACACTAGT chrII:266195-266665 + 4 7.45e-09 TCT ATGGCCAAGTTGGTAAGGCG CCACACTAGT chrIII:127584-127893 + 34 9.43e-09 AAATGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXVI:810585-810848 + 16 9.43e-09 TTGCGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXV:228094-228541 + 70 9.43e-09 ATTAGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXII:875205-875652 + 4 9.43e-09 TTG TTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXI:74416-74805 + 70 9.43e-09 ATTAGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrIV:359352-359889 + 13 9.43e-09 CTCATCCTTG TTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrVII:115340-115721 + 14 9.43e-09 CTCATCCTTG TTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXIV:632417-632833 + 30 9.43e-09 AAGTGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXI:83991-84431 + 53 1.83e-08 GTATGGAGGG TTGGCCGAGTGGTCTAATGC GGCAGACTTA chrV:435621-435995 - 41 2.03e-08 AAGAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrX:414791-414891 + 14 2.03e-08 ATTAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrIII:151130-151582 - 25 2.03e-08 AAGAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrIX:300026-300506 - 59 2.03e-08 AATAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrVI:226408-227077 - 43 2.03e-08 AAATGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrX:378198-378298 + 46 3.04e-08 AATAGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrV:469229-469655 + 71 3.04e-08 AATTGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXI:307930-308419 - 68 3.04e-08 AAGTGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXV:340160-340602 - 15 3.34e-08 TCTGTTCCTC GTGGCCCAATGGTCACGGCG TCTGGCTACG chrX:233709-233809 + 44 3.34e-08 CTTGTTCCTC GTGGCCCAATGGTCACGGCG TCTGGCTACG chrV:492224-492555 - 60 3.34e-08 CCTATTCCTC GTGGCCCAATGGTCACGGCG TCTGGCTACG chrXI:490761-491192 + 48 3.34e-08 CTTGTTCCTC GTGGCCCAATGGTCACGGCG TCTGGCTACG chrXVI:572032-572570 + 24 5.80e-08 CTTCGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXV:226457-226878 - 39 5.80e-08 TTCAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXVI:860154-860698 + 9 5.80e-08 AAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrX:531581-531681 + 1 5.80e-08 . GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVI:162033-162383 + 76 5.80e-08 ACAAGCGCAA GTGGTTTAGTGGTAAAATCC AACGT chrX:396563-396663 - 65 5.80e-08 GTAAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrIV:992691-993037 + 24 5.80e-08 GTGAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXIV:374671-375102 + 39 6.91e-08 ATAAGCGGAC TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVIII:358284-358770 - 67 6.91e-08 GTAAGCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrIV:1095163-1095656 - 77 6.91e-08 GGAC TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVII:422908-423370 + 9 8.88e-08 GTGGTTGT TTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrXII:605155-605602 - 79 1.32e-07 GT GTAGCTCAGTGGTTAGAGCT TCGTGCTTAT chrIV:1175618-1176072 + 40 1.93e-07 CAAAGCTTCA GTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrVI:101158-101550 + 78 2.07e-07 ATTCGGGCGT GTGGTCTAGTGGTATGATTC TCG chrXII:92332-92723 + 77 2.07e-07 ATAAGGGCGT GTGGTCTAGTGGTATGATTC TCGC chrXIII:195935-196299 - 78 2.07e-07 CGT GTGGTCTAGTGGTATGATTC TCGCTTTGGG chrIII:90-1023 - 41 3.13e-07 AGGGTAAGCG GTAGTGGAGTTGGATACGGG TAATTGGAGG chrII:326576-327083 - 61 7.82e-07 TCCGGGTCCA ATGGTCCAGTGGTTCAAGAC GTCGCCTTTA chrIX:25945-26961 - 68 1.26e-06 CTTTTTGGTC ATAGCCTATTGGTTTGTGCC GTTCTGCACG chrIII:123381-123812 - 77 1.94e-06 GCGT GTGGTCTAGAGGTATGATTC TCGCTTAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGCCBAGTKGKTWRAGSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1150726-1151186 8.1e-11 9_[-2]_71 chrXV:274487-274961 8.1e-11 4_[+2]_76 chrXIV:602081-602545 2.3e-10 54_[+2]_26 chrIV:1305408-1305805 2.3e-10 79_[+2]_1 chrXIV:569656-570162 2.3e-10 55_[-2]_25 chrII:197272-197826 2.3e-10 [+2]_80 chrX:523828-523928 2.3e-10 22_[-2]_58 chrIX:183290-183696 2.3e-10 44_[-2]_36 chrXII:167799-168223 2.3e-10 38_[-2]_42 chrXII:592361-592833 3.3e-10 46_[-2]_34 chrX:617719-617819 3.3e-10 44_[+2]_36 chrXII:656842-657209 1.7e-09 5_[-2]_75 chrVII:774135-774624 1.7e-09 25_[+2]_55 chrXIII:321006-321320 1.7e-09 80_[-2] chrXI:219758-220099 1.7e-09 22_[+2]_58 chrX:424277-424377 2e-09 44_[-2]_36 chrXII:962818-963266 2e-09 37_[-2]_43 chrXV:353907-354294 7.4e-09 37_[-2]_43 chrII:266195-266665 7.4e-09 3_[+2]_77 chrIII:127584-127893 9.4e-09 33_[+2]_47 chrXVI:810585-810848 9.4e-09 15_[+2]_65 chrXV:228094-228541 9.4e-09 69_[+2]_11 chrXII:875205-875652 9.4e-09 3_[+2]_77 chrXI:74416-74805 9.4e-09 69_[+2]_11 chrIV:359352-359889 9.4e-09 12_[+2]_68 chrVII:115340-115721 9.4e-09 13_[+2]_67 chrXIV:632417-632833 9.4e-09 29_[+2]_51 chrXI:83991-84431 1.8e-08 52_[+2]_28 chrV:435621-435995 2e-08 40_[-2]_40 chrX:414791-414891 2e-08 13_[+2]_67 chrIII:151130-151582 2e-08 24_[-2]_56 chrIX:300026-300506 2e-08 58_[-2]_22 chrVI:226408-227077 2e-08 42_[-2]_38 chrX:378198-378298 3e-08 45_[+2]_35 chrV:469229-469655 3e-08 70_[+2]_10 chrXI:307930-308419 3e-08 67_[-2]_13 chrXV:340160-340602 3.3e-08 14_[-2]_66 chrX:233709-233809 3.3e-08 43_[+2]_37 chrV:492224-492555 3.3e-08 59_[-2]_21 chrXI:490761-491192 3.3e-08 47_[+2]_33 chrXVI:572032-572570 5.8e-08 23_[+2]_57 chrXV:226457-226878 5.8e-08 38_[-2]_42 chrXVI:860154-860698 5.8e-08 8_[+2]_72 chrX:531581-531681 5.8e-08 [+2]_80 chrVI:162033-162383 5.8e-08 75_[+2]_5 chrX:396563-396663 5.8e-08 64_[-2]_16 chrIV:992691-993037 5.8e-08 23_[+2]_57 chrXIV:374671-375102 6.9e-08 38_[+2]_42 chrVIII:358284-358770 6.9e-08 66_[-2]_14 chrIV:1095163-1095656 6.9e-08 76_[-2]_4 chrVII:422908-423370 8.9e-08 8_[+2]_72 chrXII:605155-605602 1.3e-07 78_[-2]_2 chrIV:1175618-1176072 1.9e-07 39_[+2]_41 chrVI:101158-101550 2.1e-07 77_[+2]_3 chrXII:92332-92723 2.1e-07 76_[+2]_4 chrXIII:195935-196299 2.1e-07 77_[-2]_3 chrIII:90-1023 3.1e-07 40_[-2]_40 chrII:326576-327083 7.8e-07 60_[-2]_20 chrIX:25945-26961 1.3e-06 67_[-2]_13 chrIII:123381-123812 1.9e-06 76_[-2]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGCCBAGTKGKTWRAGSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KTGGCCBAGTKGKTWRAGSS width=20 seqs=60 chrIV:1150726-1151186 ( 10) GTGGCCGAGTGGTTAAGGCG 1 chrXV:274487-274961 ( 5) GTGGCCGAGTGGTTAAGGCG 1 chrXIV:602081-602545 ( 55) TTGGCCCAGTTGGTTAAGGC 1 chrIV:1305408-1305805 ( 80) TTGGCCGAGTGGTTAAGGCG 1 chrXIV:569656-570162 ( 56) TTGGCCCAGTTGGTTAAGGC 1 chrII:197272-197826 ( 1) TTGGCCCAGTTGGTTAAGGC 1 chrX:523828-523928 ( 23) TTGGCCGAGTGGTTAAGGCG 1 chrIX:183290-183696 ( 45) TTGGCCCAGTTGGTTAAGGC 1 chrXII:167799-168223 ( 39) TTGGCCGAGTGGTTAAGGCG 1 chrXII:592361-592833 ( 47) TTGGCCGAGTGGTTTAAGGC 1 chrX:617719-617819 ( 45) TTGGCCGAGTGGTTTAAGGC 1 chrXII:656842-657209 ( 6) GTGGCGTAGTCGGTAGCGCG 1 chrVII:774135-774624 ( 26) GTGGCGTAGTCGGTAGCGCG 1 chrXIII:321006-321320 ( 81) GTGGCGTAGTCGGTAGCGCG 1 chrXI:219758-220099 ( 23) GTGGCGTAGTCGGTAGCGCG 1 chrX:424277-424377 ( 45) TTGGCCGAGTGGTCTAAGGC 1 chrXII:962818-963266 ( 38) TTGGCCGAGTGGTCTAAGGC 1 chrXV:353907-354294 ( 38) ATGGCCAAGTTGGTAAGGCG 1 chrII:266195-266665 ( 4) ATGGCCAAGTTGGTAAGGCG 1 chrIII:127584-127893 ( 34) ATGGCCAAGTTGGTTAAGGC 1 chrXVI:810585-810848 ( 16) ATGGCCAAGTTGGTTAAGGC 1 chrXV:228094-228541 ( 70) ATGGCCAAGTTGGTTAAGGC 1 chrXII:875205-875652 ( 4) TTAGCTCAGTTGGTAGAGCG 1 chrXI:74416-74805 ( 70) ATGGCCAAGTTGGTTAAGGC 1 chrIV:359352-359889 ( 13) TTAGCTCAGTTGGTAGAGCG 1 chrVII:115340-115721 ( 14) TTAGCTCAGTTGGTAGAGCG 1 chrXIV:632417-632833 ( 30) ATGGCCAAGTTGGTTAAGGC 1 chrXI:83991-84431 ( 53) TTGGCCGAGTGGTCTAATGC 1 chrV:435621-435995 ( 41) TTGGCGCAATCGGTAGCGCG 1 chrX:414791-414891 ( 14) TTGGCGCAATCGGTAGCGCG 1 chrIII:151130-151582 ( 25) TTGGCGCAATCGGTAGCGCG 1 chrIX:300026-300506 ( 59) TTGGCGCAATCGGTAGCGCG 1 chrVI:226408-227077 ( 43) TTGGCGCAATCGGTAGCGCG 1 chrX:378198-378298 ( 46) GTGGTCTAGTCGGTTATGGC 1 chrV:469229-469655 ( 71) GTGGTCTAGTCGGTTATGGC 1 chrXI:307930-308419 ( 68) GTGGTCTAGTCGGTTATGGC 1 chrXV:340160-340602 ( 15) GTGGCCCAATGGTCACGGCG 1 chrX:233709-233809 ( 44) GTGGCCCAATGGTCACGGCG 1 chrV:492224-492555 ( 60) GTGGCCCAATGGTCACGGCG 1 chrXI:490761-491192 ( 48) GTGGCCCAATGGTCACGGCG 1 chrXVI:572032-572570 ( 24) GTGGTTTAGTGGTAAAATCC 1 chrXV:226457-226878 ( 39) GTGGTTTAGTGGTAAAATCC 1 chrXVI:860154-860698 ( 9) GTGGTTTAGTGGTAAAATCC 1 chrX:531581-531681 ( 1) GTGGTTTAGTGGTAAAATCC 1 chrVI:162033-162383 ( 76) GTGGTTTAGTGGTAAAATCC 1 chrX:396563-396663 ( 65) GTGGTTTAGTGGTAAAATCC 1 chrIV:992691-993037 ( 24) GTGGTTTAGTGGTAAAATCC 1 chrXIV:374671-375102 ( 39) TTAGCTCAGTTGGGAGAGCG 1 chrVIII:358284-358770 ( 67) TTAGCTCAGTTGGGAGAGCG 1 chrIV:1095163-1095656 ( 77) TTAGCTCAGTTGGGAGAGCG 1 chrVII:422908-423370 ( 9) TTGGCCGAGCGGTCTAAGGC 1 chrXII:605155-605602 ( 79) GTAGCTCAGTGGTTAGAGCT 1 chrIV:1175618-1176072 ( 40) GTAGCTCAGTAGGAAGAGCG 1 chrVI:101158-101550 ( 78) GTGGTCTAGTGGTATGATTC 1 chrXII:92332-92723 ( 77) GTGGTCTAGTGGTATGATTC 1 chrXIII:195935-196299 ( 78) GTGGTCTAGTGGTATGATTC 1 chrIII:90-1023 ( 41) GTAGTGGAGTTGGATACGGG 1 chrII:326576-327083 ( 61) ATGGTCCAGTGGTTCAAGAC 1 chrIX:25945-26961 ( 68) ATAGCCTATTGGTTTGTGCC 1 chrIII:123381-123812 ( 77) GTGGTCTAGAGGTATGATTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGCCBAGTKGKTWRAGSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 48600 bayes= 10.9357 E= 4.4e-148 -103 -1255 122 39 -1255 -1255 -1255 171 -88 -1255 210 -1255 -1255 -1255 237 -1255 -1255 192 -1255 -20 -1255 159 -22 -29 -139 92 5 5 171 -1255 -1255 -1255 -103 -1255 210 -420 -420 -354 -1255 166 -420 5 132 -3 -1255 -1255 237 -1255 -1255 -1255 141 66 -50 -54 -195 97 93 -354 -1255 39 89 -154 92 -1255 93 -22 -8 -220 -1255 -1255 205 -61 -420 163 71 -220 -1255 141 127 -420 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGCCBAGTKGKTWRAGSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 60 E= 4.4e-148 0.150000 0.000000 0.450000 0.400000 0.000000 0.000000 0.000000 1.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.733333 0.000000 0.266667 0.000000 0.583333 0.166667 0.250000 0.116667 0.366667 0.200000 0.316667 1.000000 0.000000 0.000000 0.000000 0.150000 0.000000 0.833333 0.016667 0.016667 0.016667 0.000000 0.966667 0.016667 0.200000 0.483333 0.300000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.516667 0.483333 0.216667 0.133333 0.050000 0.600000 0.583333 0.016667 0.000000 0.400000 0.566667 0.066667 0.366667 0.000000 0.583333 0.166667 0.183333 0.066667 0.000000 0.000000 0.800000 0.200000 0.016667 0.600000 0.316667 0.066667 0.000000 0.516667 0.466667 0.016667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGCCBAGTKGKTWRAGSS MEME-2 regular expression -------------------------------------------------------------------------------- [GT]TGG[CT][CT][CTG]AGT[GTC]G[GT][TA][AT][AG]A[GT][CG][CG] -------------------------------------------------------------------------------- Time 673.72 secs. ******************************************************************************** ******************************************************************************** MOTIF SAAARCSKRAWGTGATARCCRYTACACTAT MEME-3 width = 30 sites = 14 llr = 439 E-value = 1.6e-074 ******************************************************************************** -------------------------------------------------------------------------------- Motif SAAARCSKRAWGTGATARCCRYTACACTAT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :88a5:::4941::a:a5::5::a:a::a1 pos.-specific C 4::::841::1:::::::aa:6::a:a::1 probability G 612:52646119:a:::5::5::::::::: matrix T :1:::::6::4:a::a:::::4a::::a:8 bits 2.4 * ** * * 2.1 * ** * * 1.9 * ** * * 1.7 * * ****** ** ******* Relative 1.4 * * ** ****** ** ******* Entropy 1.2 * ** ** ** ****** ** ******** (45.2 bits) 0.9 ******* ** ****************** 0.7 ********** ******************* 0.5 ********** ******************* 0.2 ****************************** 0.0 ------------------------------ Multilevel GAAAACGTGATGTGATAACCACTACACTAT consensus C G GGCGA A G GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAAARCSKRAWGTGATARCCRYTACACTAT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrV:354694-355203 - 42 1.82e-17 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATTAC chrII:644966-645429 - 26 1.82e-17 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATAAT chrXVI:210005-210471 + 40 1.82e-17 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGACAAT chrV:487169-487585 + 40 1.82e-17 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATTAA chrXI:140698-141487 + 12 1.82e-17 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATTAC chrV:130831-131385 + 60 3.92e-15 TTGTTCGGAT CAAAACCGAAAGTGATAACCACTACACTAT AAAACCTCTT chrII:350607-351045 - 57 3.92e-15 TTGTCCGGAT CAAAACCGAAAGTGATAACCACTACACTAT AAAACCCTTT chrIV:802592-803010 + 16 3.92e-15 TTGTCCGGAT CAAAACCGAAAGTGATAACCACTACACTAT AGGACCGACA chrIII:168126-168546 + 51 3.92e-15 TTGTCCGGAT CAAAACCGAAAGTGATAACCACTACACTAT AGGACCAGGA chrIV:1016975-1017508 + 52 5.83e-15 TCTCCACGGT GAGAACGTGATGTGATAGCCGTTACACTAC ATCGGATTGT chrXIII:808051-808549 + 32 9.08e-15 TTGTTCGGAT CAGAACCGAAAGTGATAACCACTACACTAT AGGACCTTTT chrIV:1075288-1075735 + 48 1.11e-13 CCTTTGCCGT GTGAAGGCAACGTGATAGCCGCTACACTAT TGGAACAATA chrXIV:96066-96506 + 41 1.29e-13 TCCCCACCTT GGAAGGGTGGGATGATAACCACTACACTAA CCGCCCATGT chrVII:779401-779904 - 20 1.29e-13 TCCCCACCTT GGAAGGGTGGGATGATAACCACTACACTAA CCGCCCGGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAAARCSKRAWGTGATARCCRYTACACTAT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:354694-355203 1.8e-17 41_[-3]_29 chrII:644966-645429 1.8e-17 25_[-3]_45 chrXVI:210005-210471 1.8e-17 39_[+3]_31 chrV:487169-487585 1.8e-17 39_[+3]_31 chrXI:140698-141487 1.8e-17 11_[+3]_59 chrV:130831-131385 3.9e-15 59_[+3]_11 chrII:350607-351045 3.9e-15 56_[-3]_14 chrIV:802592-803010 3.9e-15 15_[+3]_55 chrIII:168126-168546 3.9e-15 50_[+3]_20 chrIV:1016975-1017508 5.8e-15 51_[+3]_19 chrXIII:808051-808549 9.1e-15 31_[+3]_39 chrIV:1075288-1075735 1.1e-13 47_[+3]_23 chrXIV:96066-96506 1.3e-13 40_[+3]_30 chrVII:779401-779904 1.3e-13 19_[-3]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAAARCSKRAWGTGATARCCRYTACACTAT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SAAARCSKRAWGTGATARCCRYTACACTAT width=30 seqs=14 chrV:354694-355203 ( 42) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrII:644966-645429 ( 26) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrXVI:210005-210471 ( 40) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrV:487169-487585 ( 40) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrXI:140698-141487 ( 12) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrV:130831-131385 ( 60) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrII:350607-351045 ( 57) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrIV:802592-803010 ( 16) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrIII:168126-168546 ( 51) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrIV:1016975-1017508 ( 52) GAGAACGTGATGTGATAGCCGTTACACTAC 1 chrXIII:808051-808549 ( 32) CAGAACCGAAAGTGATAACCACTACACTAT 1 chrIV:1075288-1075735 ( 48) GTGAAGGCAACGTGATAGCCGCTACACTAT 1 chrXIV:96066-96506 ( 41) GGAAGGGTGGGATGATAACCACTACACTAA 1 chrVII:779401-779904 ( 20) GGAAGGGTGGGATGATAACCACTACACTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAAARCSKRAWGTGATARCCRYTACACTAT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 11.4146 E= 1.6e-074 -1045 88 173 -1045 136 -1045 -44 -210 136 -1045 14 -1045 171 -1045 -1045 -1045 71 -1045 137 -1045 -1045 202 14 -1045 -1045 88 173 -1045 -1045 -144 88 90 48 -1045 156 -1045 148 -1045 -44 -1045 22 -144 -44 48 -110 -1045 214 -1045 -1045 -1045 -1045 171 -1045 -1045 237 -1045 171 -1045 -1045 -1045 -1045 -1045 -1045 171 171 -1045 -1045 -1045 71 -1045 137 -1045 -1045 237 -1045 -1045 -1045 237 -1045 -1045 71 -1045 137 -1045 -1045 156 -1045 48 -1045 -1045 -1045 171 171 -1045 -1045 -1045 -1045 237 -1045 -1045 171 -1045 -1045 -1045 -1045 237 -1045 -1045 -1045 -1045 -1045 171 171 -1045 -1045 -1045 -110 -144 -1045 136 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAAARCSKRAWGTGATARCCRYTACACTAT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 14 E= 1.6e-074 0.000000 0.357143 0.642857 0.000000 0.785714 0.000000 0.142857 0.071429 0.785714 0.000000 0.214286 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.785714 0.214286 0.000000 0.000000 0.357143 0.642857 0.000000 0.000000 0.071429 0.357143 0.571429 0.428571 0.000000 0.571429 0.000000 0.857143 0.000000 0.142857 0.000000 0.357143 0.071429 0.142857 0.428571 0.142857 0.000000 0.857143 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.571429 0.000000 0.428571 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.142857 0.071429 0.000000 0.785714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAAARCSKRAWGTGATARCCRYTACACTAT MEME-3 regular expression -------------------------------------------------------------------------------- [GC]A[AG]A[AG][CG][GC][TG][GA]A[TA]GTGATA[AG]CC[AG][CT]TACACTAT -------------------------------------------------------------------------------- Time 987.04 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:347416-347923 2.02e-03 40_[-1(3.23e-07)]_31 chrVIII:74768-76265 2.77e-01 100 chrXIV:783517-784322 2.95e-01 100 chrVI:226408-227077 3.86e-12 2_[-1(3.56e-11)]_11_[-2(2.03e-08)]_\ 38 chrXI:140698-141487 2.01e-13 11_[+3(1.82e-17)]_59 chrI:166173-166630 9.77e-01 100 chrIV:1344701-1345803 8.77e-01 100 chrXVI:821647-822279 9.50e-01 100 chrXIII:549909-553168 9.98e-01 100 chrVII:400336-400552 9.65e-01 100 chrVII:323398-325104 9.29e-01 100 chrXI:261134-262028 8.99e-01 100 chrIV:619718-620210 1.88e-04 61_[-1(1.43e-08)]_10 chrIII:137696-139028 9.48e-02 100 chrXVI:378650-378988 1.75e-01 37_[+2(8.10e-05)]_43 chrIV:992691-993037 5.66e-14 23_[+2(5.80e-08)]_9_[+1(1.95e-13)]_\ 19 chrXI:382186-382463 9.60e-02 100 chrIX:316011-318270 9.67e-01 100 chrXIV:560364-560861 3.48e-01 100 chrIV:915106-916265 7.34e-01 100 chrXII:282599-283982 5.53e-01 100 chrIX:300026-300506 3.86e-12 18_[-1(3.56e-11)]_11_[-2(2.03e-08)]_\ 22 chrII:266195-266665 7.59e-11 3_[+2(7.45e-09)]_11_[+1(3.14e-09)]_\ 37 chrXI:325843-327595 6.54e-01 100 chrXV:1053908-1054639 9.73e-01 100 chrVII:328391-328957 2.62e-01 100 chrXV:594308-594670 8.77e-01 100 chrXI:578755-579328 1.27e-07 33_[+1(1.05e-11)]_38 chrVII:736201-736612 1.76e-06 19_[+1(1.84e-10)]_52 chrXV:710125-710484 9.07e-01 100 chrXII:1029109-1030270 4.52e-01 100 chrV:77518-79893 1.37e-01 100 chrXVI:585664-587610 1.66e-01 100 chrII:556480-558187 4.31e-01 100 chrIV:721807-722068 2.03e-01 100 chrXV:505730-507057 7.72e-01 100 chrIV:835745-836253 7.21e-01 100 chrXIII:732016-733385 5.20e-01 100 chrVI:210443-210967 1.22e-01 100 chrXII:704276-704564 4.70e-01 100 chrVIII:103829-105494 3.64e-01 100 chrX:422605-422705 8.37e-01 100 chrVII:255198-255621 6.68e-01 100 chrVIII:236592-236869 8.15e-01 100 chrXII:783932-784507 5.31e-01 100 chrXIII:162950-164343 6.53e-01 100 chrXIV:229585-230715 7.86e-01 100 chrXIV:632417-632833 2.93e-10 29_[+2(9.43e-09)]_12_[+1(4.68e-09)]_\ 10 chrVII:345863-346678 4.14e-01 100 chrXVI:768985-769476 1.33e-07 33_[-1(1.05e-11)]_38 chrXII:1002304-1003338 4.33e-02 100 chrIV:1507111-1507652 1.86e-01 100 chrXV:444605-446246 6.39e-01 100 chrXIII:159283-160194 9.57e-01 100 chrVII:779401-779904 3.92e-17 19_[-3(1.29e-13)]_[+1(2.26e-10)]_22 chrXI:430639-431651 8.02e-01 100 chrX:354016-354116 8.10e-02 100 chrVI:167283-167714 3.48e-06 41_[+1(1.04e-09)]_30 chrXVI:280533-283259 3.07e-01 100 chrVI:64027-65365 8.99e-01 100 chrXI:219758-220099 2.73e-13 22_[+2(1.74e-09)]_11_[+1(8.65e-10)]_\ 18 chrXII:737744-738482 9.18e-01 100 chrXI:551555-552713 5.33e-01 100 chrX:702546-702646 5.68e-02 100 chrV:176901-177430 1.07e-08 19_[+1(6.16e-13)]_52 chrIV:976074-976773 3.33e-01 100 chrVII:115340-115721 6.64e-14 13_[+2(9.43e-09)]_34_[+1(1.05e-11)]_\ 4 chrXIII:290586-291140 8.82e-09 23_[+1(6.16e-13)]_48 chrXIV:61570-64552 1.06e-01 100 chrIII:11105-11533 8.99e-01 100 chrXII:440452-441633 6.80e-01 100 chrVII:882056-884010 8.56e-01 100 chrXI:46721-47004 2.36e-01 100 chrIII:82196-82698 7.45e-09 71_[-1(6.16e-13)] chrXII:919375-923369 2.33e-02 33_[+1(5.52e-05)]_38 chrIII:123381-123812 9.80e-14 37_[-1(2.07e-14)]_10_[-2(1.94e-06)]_\ 4 chrV:235374-237129 5.30e-01 100 chrXII:366042-366514 9.04e-02 100 chrIV:1161541-1162089 5.28e-01 100 chrXII:47493-49123 4.52e-01 100 chrVII:122034-122411 5.82e-01 100 chrXVI:519846-520535 1.43e-01 100 chrV:550889-551574 1.45e-01 100 chrXIV:631563-632143 6.17e-10 49_[-1(2.07e-14)]_22 chrVII:706914-707181 9.40e-01 100 chrII:181332-181667 2.57e-01 100 chrII:59550-61313 1.48e-01 100 chrXII:809762-815763 1.43e-02 100 chrXV:853983-854823 4.09e-01 100 chrVII:959917-961558 7.21e-01 100 chrII:413763-415330 5.47e-02 100 chrIII:151130-151582 8.59e-05 24_[-2(2.03e-08)]_56 chrXV:925183-925402 9.80e-01 100 chrIV:322202-323610 5.74e-01 100 chrXV:109565-110684 6.95e-01 100 chrVII:611852-612249 1.91e-02 10_[-3(1.62e-05)]_60 chrXVI:214653-215199 9.27e-01 100 chrXII:449289-450459 6.37e-01 100 chrXVI:819307-820302 3.12e-01 100 chrII:592884-593428 9.86e-01 100 chrV:441800-442659 1.96e-01 100 chrIII:149729-150176 1.44e-05 53_[+1(4.33e-09)]_18 chrXVI:622282-622851 2.02e-06 30_[-1(2.04e-10)]_41 chrXII:962818-963266 1.46e-06 37_[-2(2.02e-09)]_43 chrXII:241626-243502 9.90e-01 100 chrIII:90-1023 4.94e-04 40_[-2(3.13e-07)]_40 chrIV:359352-359889 6.64e-14 12_[+2(9.43e-09)]_34_[+1(1.05e-11)]_\ 5 chrXVI:927300-928270 1.39e-02 100 chrIV:27-306 1.28e-01 100 chrXV:43380-43915 5.56e-01 100 chrII:332255-333066 1.52e-01 100 chrIX:99637-100028 6.47e-01 100 chrIV:509282-510337 6.49e-01 100 chrIII:107142-107804 9.90e-01 100 chrIX:384584-387575 3.96e-01 100 chrXVI:930675-931016 5.77e-01 100 chrXV:423739-424713 8.08e-01 100 chrXII:837651-839397 3.44e-01 100 chrIX:25945-26961 4.92e-03 67_[-2(1.26e-06)]_13 chrXV:348701-349420 8.69e-01 100 chrVII:625122-625860 9.29e-02 100 chrXIII:540337-540817 3.85e-01 100 chrVIII:62609-62922 1.16e-03 45_[-3(1.08e-06)]_25 chrIV:578842-580725 8.71e-01 100 chrV:282020-284179 1.10e-01 100 chrVII:411882-412588 5.31e-01 100 chrXV:903374-905767 6.40e-01 100 chrXIII:747744-748174 7.07e-02 100 chrXV:758925-759524 4.90e-01 100 chrX:415803-415903 3.95e-03 51_[+1(5.23e-06)]_20 chrVII:544411-544891 2.31e-03 11_[+3(1.81e-05)]_59 chrX:360518-360618 2.32e-01 100 chrXII:522266-523635 4.88e-02 75_[-2(7.37e-05)]_5 chrXII:167799-168223 2.85e-06 38_[-2(2.29e-10)]_42 chrIV:555434-556655 2.06e-02 2_[+2(4.08e-05)]_78 chrXIII:572640-573152 4.86e-06 43_[-1(4.09e-10)]_28 chrXIV:493699-495707 3.71e-01 100 chrIV:1243151-1243309 5.84e-01 100 chrVII:438566-439906 7.19e-01 100 chrXI:334093-334982 2.21e-01 100 chrII:45629-46705 4.16e-01 100 chrV:138458-142706 8.51e-01 100 chrXI:382729-383363 2.29e-01 100 chrXV:514231-514724 9.20e-02 100 chrIV:1095163-1095656 9.74e-11 17_[-1(2.04e-10)]_30_[-2(6.91e-08)]_\ 4 chrI:182170-183146 9.96e-01 100 chrVII:398512-400156 5.90e-01 100 chrX:424277-424377 2.85e-06 44_[-2(2.02e-09)]_36 chrXI:809-1048 1.12e-01 100 chrVII:884443-884877 6.63e-01 100 chrXIII:873697-874337 2.80e-01 100 chrVII:845459-846005 3.68e-09 1_[+1(1.95e-13)]_70 chrXIII:378856-379596 1.33e-01 100 chrIV:538846-539379 2.73e-01 100 chrII:477031-477770 6.14e-01 100 chrIV:1256841-1257284 4.12e-10 2_[-1(3.36e-10)]_10_[-2(2.90e-05)]_\ 39 chrVII:483288-483715 1.12e-05 27_[+1(1.10e-07)]_44 chrVIII:504443-505577 3.63e-01 100 chrIV:355038-356981 1.23e-01 100 chrXII:374212-374686 4.11e-01 100 chrVII:930865-931613 5.60e-01 100 chrXIII:195935-196299 8.34e-12 7_[-1(7.86e-11)]_41_[-2(2.07e-07)]_\ 3 chrV:491046-491904 1.64e-01 55_[-3(8.68e-05)]_15 chrVII:205327-206335 1.11e-01 100 chrXII:975726-976180 6.46e-01 100 chrIV:338766-341648 8.19e-01 100 chrIV:118439-118888 7.44e-01 100 chrVII:989777-990396 7.87e-01 100 chrX:414791-414891 3.86e-12 13_[+2(2.03e-08)]_11_[+1(3.56e-11)]_\ 27 chrIV:600766-602387 1.39e-01 100 chrX:101122-101222 1.92e-01 100 chrXV:92767-94785 9.68e-01 100 chrII:36245-36873 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chrIV:1300204-1301341 9.51e-01 100 chrXV:391505-391955 4.64e-01 100 chrXII:673496-675157 4.82e-01 100 chrXIII:296731-298890 6.82e-01 100 chrX:453341-453441 2.52e-01 100 chrX:18814-18914 4.35e-01 100 chrXII:1051914-1052208 2.10e-08 66_[-1(6.22e-12)]_5 chrIV:411053-411667 1.36e-01 100 chrII:642851-643244 6.15e-06 16_[-1(1.07e-08)]_55 chrVII:185491-185892 4.03e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************