******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP1/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:71733-73614 1.0000 100 chrI:139011-139343 1.0000 100 chrI:141178-141985 1.0000 100 chrI:147594-147979 1.0000 100 chrI:166193-166613 1.0000 100 chrI:180963-181442 1.0000 100 chrI:182167-183178 1.0000 100 chrII:9366-10169 1.0000 100 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chrXV:93091-94453 1.0000 100 chrXV:96089-96863 1.0000 100 chrXV:109782-110676 1.0000 100 chrXV:110877-111088 1.0000 100 chrXV:113492-113870 1.0000 100 chrXV:159268-160131 1.0000 100 chrXV:160343-160725 1.0000 100 chrXV:217137-218388 1.0000 100 chrXV:226319-226874 1.0000 100 chrXV:228026-228738 1.0000 100 chrXV:274518-274939 1.0000 100 chrXV:282027-282405 1.0000 100 chrXV:287766-288369 1.0000 100 chrXV:300907-301290 1.0000 100 chrXV:340143-340837 1.0000 100 chrXV:353925-354255 1.0000 100 chrXV:380315-381249 1.0000 100 chrXV:383006-383321 1.0000 100 chrXV:438370-439407 1.0000 100 chrXV:444625-446179 1.0000 100 chrXV:464300-465207 1.0000 100 chrXV:571755-572110 1.0000 100 chrXV:594318-594681 1.0000 100 chrXV:605059-606164 1.0000 100 chrXV:619159-623687 1.0000 100 chrXV:650916-651683 1.0000 100 chrXV:663554-664453 1.0000 100 chrXV:722946-724594 1.0000 100 chrXV:758941-759521 1.0000 100 chrXV:761912-762399 1.0000 100 chrXV:779922-780959 1.0000 100 chrXV:797040-797633 1.0000 100 chrXV:797889-799051 1.0000 100 chrXV:832352-832698 1.0000 100 chrXV:842412-842904 1.0000 100 chrXV:853752-854852 1.0000 100 chrXV:867485-868074 1.0000 100 chrXV:877500-878106 1.0000 100 chrXV:899890-901199 1.0000 100 chrXV:912246-912603 1.0000 100 chrXV:960920-963265 1.0000 100 chrXV:976293-976721 1.0000 100 chrXV:977075-978362 1.0000 100 chrXV:979732-981365 1.0000 100 chrXV:1003927-1006905 1.0000 100 chrXV:1027747-1028955 1.0000 100 chrXVI:55838-56403 1.0000 100 chrXVI:74638-76291 1.0000 100 chrXVI:108580-112179 1.0000 100 chrXVI:173047-174129 1.0000 100 chrXVI:210000-210589 1.0000 100 chrXVI:214932-215148 1.0000 100 chrXVI:280538-281600 1.0000 100 chrXVI:282104-282968 1.0000 100 chrXVI:297799-298353 1.0000 100 chrXVI:303115-305011 1.0000 100 chrXVI:338416-339200 1.0000 100 chrXVI:351957-352976 1.0000 100 chrXVI:376597-377360 1.0000 100 chrXVI:379728-381122 1.0000 100 chrXVI:404866-405942 1.0000 100 chrXVI:435150-435324 1.0000 100 chrXVI:435496-436200 1.0000 100 chrXVI:560011-560270 1.0000 100 chrXVI:572056-572534 1.0000 100 chrXVI:581851-582273 1.0000 100 chrXVI:622338-622827 1.0000 100 chrXVI:654154-656246 1.0000 100 chrXVI:678940-680715 1.0000 100 chrXVI:689367-689817 1.0000 100 chrXVI:718390-719655 1.0000 100 chrXVI:744106-744522 1.0000 100 chrXVI:769018-769436 1.0000 100 chrXVI:775697-776188 1.0000 100 chrXVI:794942-796493 1.0000 100 chrXVI:810607-811425 1.0000 100 chrXVI:819112-819915 1.0000 100 chrXVI:821650-822186 1.0000 100 chrXVI:842857-844094 1.0000 100 chrXVI:856768-857140 1.0000 100 chrXVI:860138-860664 1.0000 100 chrXVI:879307-880518 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 595 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 59500 N= 595 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.307 C 0.193 G 0.193 T 0.307 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--YAP1/background): A 0.311 C 0.189 G 0.189 T 0.311 ******************************************************************************** ******************************************************************************** MOTIF AGRTCCBSGGTTCGATYCCSVKYKKGVGC MEME-1 width = 29 sites = 67 llr = 1338 E-value = 9.9e-267 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGRTCCBSGGTTCGATYCCSVKYKKGVGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 6142:2112::::2a2::::2:2122312 pos.-specific C :1:28544::::a::24a75425111327 probability G 376::2357a:::8:1:::445:34635: matrix T :1:61:2:::aa:::45:3::33431111 bits 2.4 * * 2.2 * * * 1.9 * * * 1.7 ****** * Relative 1.4 * ****** * Entropy 1.2 * * ****** * * (28.8 bits) 1.0 ** * ******** **** * 0.7 *** ** ******** ****** * * 0.5 *************** ******* * ** 0.2 *************** ************* 0.0 ----------------------------- Multilevel AGGTCCCGGGTTCGATTCCCGGCTGGAGC consensus G A AGCA AC TGCTTGT G A sequence GT C A A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCCBSGGTTCGATYCCSVKYKKGVGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXVI:860138-860664 + 69 3.25e-15 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC AGA chrXVI:572056-572534 + 65 3.25e-15 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC AATTTTT chrXV:282027-282405 + 39 3.25e-15 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC ATTTCTTTTT chrXV:226319-226874 - 66 3.25e-15 ATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC AAATTTTTTG chrX:531587-532220 + 16 3.25e-15 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC AGTTTCTTTT chrX:396538-396928 - 44 3.25e-15 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC ATTTCTTTTT chrVII:930827-931154 - 14 3.25e-15 TGCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC ATTTTTTTCT chrVII:845302-846171 + 4 3.25e-15 GTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC AATGTTTTTT chrIV:83456-83802 + 10 3.25e-15 GCCATCGTT GGGCCCCCGGTTCGATTCCGGGCTTGCGC AAGTTTAATT chrIII:123435-123741 - 40 1.72e-14 AGGGTGCGGG AGGTCCCGGGTTCGAGTCCCGGCTCGCCC CACATTGTTT chrVIII:475556-475876 - 41 7.98e-13 CACACGGCAA AGGTCCCGAGTTCGATCCTCGGTTGGAAC ATTTTAACAT chrIV:488411-489173 - 56 9.10e-12 TACACGGCGA AGATCCCGAGTTCGAACCTCGGTTGGATC AGAATCTTTT chrXIII:195928-196287 - 12 1.35e-11 AGCATGCGAG AGGCCCTGGGTTCAATTCCCAGCTCGCCC CTTTTTTTGA chrXV:976293-976721 + 7 1.98e-11 ATCTGA AGGTCGAGAGTTCGAACCTCCCCTGGAGC AATATTTTTT chrXIII:572279-573493 - 48 1.98e-11 CATAATCTGA AGGTCGAGAGTTCGAACCTCCCCTGGAGC ACATTTTTTT chrX:390873-391304 - 6 1.98e-11 CATAATCTGA AGGTCGAGAGTTCGAACCTCCCCTGGAGC ATATT chrIV:1175629-1176090 + 63 1.98e-11 CATAATCTGA AGGTCGAGAGTTCGAACCTCCCCTGGAGC ATTTTTGCC chrXII:1051915-1052198 - 66 2.24e-11 ACGCGG GGATCAGCGGTTCGATCCCGCTAGAGACC ATTATTTTTT chrVII:738921-739504 + 4 2.24e-11 CGG GGATCAGCGGTTCGATCCCGCTAGAGACC ATTTACTTTT chrIV:1016942-1017500 - 37 2.87e-11 TCTCACCGTG GAGACCGGGGTTCGACTCCCCGCTTCGGA GTTTCTTTTT chrXIII:807957-808540 - 49 3.67e-11 TCTGATCCGA ACAACCCCAGTTCGAATCCGGGTGGGACC TTCCCTTCAT chrXIII:480416-480789 - 70 3.67e-11 TA AGGTTAGGGGTTCGAGCCCCCTACAGGGC TTCTTTTTTT chrXII:448494-448835 - 37 3.67e-11 TTTGATCCGG ACAACCCCGGTTCGAATCCGGGTAGGACC TTCTTTTTTG chrX:414827-415197 + 47 3.67e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCCTACAGGGC TAATATTTTT chrIII:168090-168503 - 56 3.67e-11 TTTGATCCGG ACAACCCCGGTTCGAATCCGGGTAGGACC TTTTTTTGAA chrV:311739-312274 - 68 7.45e-11 GAAG AGGTCATCGGTTCGATTCCGGTTGCGTCC AATGAAATCT chrXIII:586474-586890 - 5 1.17e-10 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATC ATTT chrXI:307935-308392 - 32 1.17e-10 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATC AATTTTTTTT chrX:378246-378532 + 65 1.17e-10 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATC AATTTTT chrVII:823366-823671 + 58 1.17e-10 AACACGCAGA ACGTCCCCAGTTCGATCCTGGGCGAAATC ATTTTTTGAA chrV:130782-131397 - 44 1.82e-10 TTTGATCCGA ACAACCCCGGTTCGAATCCGGGTAAGACC TATTTTTTTC chrXV:110877-111088 - 31 2.52e-10 TTCCAAGGTG GGGACACGGGTTCGATTCTCGTACCGCTC ATATTTTTAC chrXII:796993-797482 + 33 2.52e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCCGTATCGGA GATATATTTA chrVII:541736-542133 + 8 2.52e-10 CACCGTG GAGACCGGGGTTCGACTCCCCGTATCGGA GTGTTCTTTT chrIX:370259-370646 + 57 2.52e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCCGTATCGGA GTATGTTTAT chrII:644985-645400 + 67 2.52e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCCGTATCGGA GTTAT chrXVI:769018-769436 - 31 3.45e-10 GGATACCGAA ATGTCAGGGGTTCGAGCCCCCTATGAGGA GTTCTTTACT chrXII:875272-875666 + 23 3.45e-10 GGATACCGAA ATGTCAGGGGTTCGAGCCCCCTATGAGGA GTTCTTTACT chrVII:115342-115730 + 68 3.45e-10 GGATACCGAA ATGTCAGGGGTTCGAGCCCCCTATGAGGA GTTC chrIV:359359-359971 + 28 3.45e-10 GGATACCGAA ATGTCAGGGGTTCGAGCCCCCTATGAGGA GTTCTTTCTT chrX:538492-538753 + 25 3.83e-10 CCTAAGGAGA AGACTGCGGGTTCGAGTCCCGTACGGAAC GTTGATTATT chrX:374200-374896 - 9 8.52e-10 TCTAATCAGA AGATTATGGGTTCGACCCCCATCGTGAGT GCTTTGTT chrX:355196-355723 + 7 8.52e-10 ATCAGA AGATTATGGGTTCGACCCCCATCGTGAGT GCTTTGTTTC chrVII:828480-828968 - 50 8.52e-10 TCTAATCAGA AGATTATGGGTTCGACCCCCATCGTGAGT GCTTTTTTTG chrXVI:856768-857140 + 41 1.03e-09 AGCATGGGAG AGGTCTCCGGTTCGATTCCGGACTCGTCC ATTTTAATTT chrXIII:320998-321294 - 52 1.03e-09 AGCATGGGAG AGGTCTCCGGTTCGATTCCGGACTCGTCC ATTTTTTATT chrXV:353925-354255 - 2 1.14e-09 AGTAATGTGG AGATCATCGGTTCAAATCCGATTGGAAGC A chrII:266247-266670 + 13 1.14e-09 AGTAATGTGG AGATCATCGGTTCAAATCCGATTGGAAGC ATTTTTTTGA chrXV:228026-228738 + 43 1.81e-09 GTTAATCGCA AGATCGTGAGTTCAACCCTCACTGGGGTC GTTATTTTTG chrXI:74431-74869 + 68 1.81e-09 GTTAATCGCA AGATCGTGAGTTCAACCCTCACTGGGGTC GCTT chrVII:730998-731402 + 31 1.81e-09 GTTAATCGCA AGATCGTGAGTTCAACCCTCACTGGGGTC GTTTTTTGCT chrII:642869-643218 - 15 6.71e-09 GCAAATCTGT TGGTCCTTAGTTCGATCCTGAGTGCGAGC TTCTTTTTTT chrXIII:837722-838212 + 70 7.28e-09 CGAAATCTTG AGATCGGGCGTTCGACTCGCCCCCGGGAG AT chrXIII:168688-169010 + 55 7.28e-09 CGAAATCTTG AGATCGGGCGTTCGACTCGCCCCCGGGAG ATATTTTTTT chrIV:946187-946582 + 37 7.28e-09 CGAAATCTTG AGATCGGGCGTTCGACTCGCCCCCGGGAG ATTTTTTTAT chrXVI:622338-622827 - 9 1.28e-08 AGTTATCTGG AGGTCCTGTGTTCGATCCACAGAATTCGC ATTTATTT chrVII:440269-441152 - 57 1.28e-08 AGTTATCTGG AGGTCCTGTGTTCGATCCACAGAATTCGC ATAATAAGCC chrXI:513076-513600 - 45 1.49e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGA GATTTTTTAT chrX:204554-205039 + 31 1.49e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCCGTCGCGGA GATTTTTTTT chrV:492232-492521 - 27 1.49e-08 ACGAACCAGA AGATTCCAGGTTCAAGTCCTGGCGGGGAA GGATTATTTT chrXVI:744106-744522 + 62 2.72e-08 TGTAATGCAA AGGTCGTTAGTTCAATTCTGACAGGTGGC AAAATTTTTT chrIV:519674-519897 - 59 7.24e-08 AGTTATTGAA GGATGCGAGGTTCGAACTCGCGCGGACAA CCGTCCAACA chrII:347435-347919 - 27 7.24e-08 TATTACTGAA GGATGCGAGGTTCGAACTCGCGCGGACAA CCGTCCAACA chrV:434408-434741 - 18 1.01e-07 TGTGGCCGAT GAAACCCTGGTTCGATTCTAGGAGATGGC ATTTTCTTTT chrIII:149732-150237 + 28 1.88e-07 CATAACCCTG ATGTCCTCGGATCGAAACCGAGCGGCGCT ATTAAATTTT chrX:415724-416212 - 14 2.84e-07 TGCAATCGAA GGGTTGCAGGTTCAATTCCTGTCCGTTTC AATTTATTTT chrIV:386231-386634 - 56 8.02e-07 TGCCTGTACA AGACCGAGTGTTCGTTCCTCCTTTAGCAT AGAAAATACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCCBSGGTTCGATYCCSVKYKKGVGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:860138-860664 3.2e-15 68_[+1]_3 chrXVI:572056-572534 3.2e-15 64_[+1]_7 chrXV:282027-282405 3.2e-15 38_[+1]_33 chrXV:226319-226874 3.2e-15 65_[-1]_6 chrX:531587-532220 3.2e-15 15_[+1]_56 chrX:396538-396928 3.2e-15 43_[-1]_28 chrVII:930827-931154 3.2e-15 13_[-1]_58 chrVII:845302-846171 3.2e-15 3_[+1]_68 chrIV:83456-83802 3.2e-15 9_[+1]_62 chrIII:123435-123741 1.7e-14 39_[-1]_32 chrVIII:475556-475876 8e-13 40_[-1]_31 chrIV:488411-489173 9.1e-12 55_[-1]_16 chrXIII:195928-196287 1.3e-11 11_[-1]_60 chrXV:976293-976721 2e-11 6_[+1]_65 chrXIII:572279-573493 2e-11 47_[-1]_24 chrX:390873-391304 2e-11 5_[-1]_66 chrIV:1175629-1176090 2e-11 62_[+1]_9 chrXII:1051915-1052198 2.2e-11 65_[-1]_6 chrVII:738921-739504 2.2e-11 3_[+1]_68 chrIV:1016942-1017500 2.9e-11 36_[-1]_35 chrXIII:807957-808540 3.7e-11 48_[-1]_23 chrXIII:480416-480789 3.7e-11 69_[-1]_2 chrXII:448494-448835 3.7e-11 36_[-1]_35 chrX:414827-415197 3.7e-11 46_[+1]_25 chrIII:168090-168503 3.7e-11 55_[-1]_16 chrV:311739-312274 7.5e-11 67_[-1]_4 chrXIII:586474-586890 1.2e-10 4_[-1]_67 chrXI:307935-308392 1.2e-10 31_[-1]_40 chrX:378246-378532 1.2e-10 64_[+1]_7 chrVII:823366-823671 1.2e-10 57_[+1]_14 chrV:130782-131397 1.8e-10 43_[-1]_28 chrXV:110877-111088 2.5e-10 30_[-1]_41 chrXII:796993-797482 2.5e-10 32_[+1]_39 chrVII:541736-542133 2.5e-10 7_[+1]_64 chrIX:370259-370646 2.5e-10 56_[+1]_15 chrII:644985-645400 2.5e-10 66_[+1]_5 chrXVI:769018-769436 3.5e-10 30_[-1]_41 chrXII:875272-875666 3.5e-10 22_[+1]_49 chrVII:115342-115730 3.5e-10 67_[+1]_4 chrIV:359359-359971 3.5e-10 27_[+1]_44 chrX:538492-538753 3.8e-10 24_[+1]_47 chrX:374200-374896 8.5e-10 8_[-1]_63 chrX:355196-355723 8.5e-10 6_[+1]_65 chrVII:828480-828968 8.5e-10 49_[-1]_22 chrXVI:856768-857140 1e-09 40_[+1]_31 chrXIII:320998-321294 1e-09 51_[-1]_20 chrXV:353925-354255 1.1e-09 1_[-1]_70 chrII:266247-266670 1.1e-09 12_[+1]_59 chrXV:228026-228738 1.8e-09 42_[+1]_29 chrXI:74431-74869 1.8e-09 67_[+1]_4 chrVII:730998-731402 1.8e-09 30_[+1]_41 chrII:642869-643218 6.7e-09 14_[-1]_57 chrXIII:837722-838212 7.3e-09 69_[+1]_2 chrXIII:168688-169010 7.3e-09 54_[+1]_17 chrIV:946187-946582 7.3e-09 36_[+1]_35 chrXVI:622338-622827 1.3e-08 8_[-1]_63 chrVII:440269-441152 1.3e-08 56_[-1]_15 chrXI:513076-513600 1.5e-08 44_[-1]_27 chrX:204554-205039 1.5e-08 30_[+1]_41 chrV:492232-492521 1.5e-08 26_[-1]_45 chrXVI:744106-744522 2.7e-08 61_[+1]_10 chrIV:519674-519897 7.2e-08 58_[-1]_13 chrII:347435-347919 7.2e-08 26_[-1]_45 chrV:434408-434741 1e-07 17_[-1]_54 chrIII:149732-150237 1.9e-07 27_[+1]_44 chrX:415724-416212 2.8e-07 13_[-1]_58 chrIV:386231-386634 8e-07 55_[-1]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCCBSGGTTCGATYCCSVKYKKGVGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGRTCCBSGGTTCGATYCCSVKYKKGVGC width=29 seqs=67 chrXVI:860138-860664 ( 69) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrXVI:572056-572534 ( 65) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrXV:282027-282405 ( 39) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrXV:226319-226874 ( 66) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrX:531587-532220 ( 16) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrX:396538-396928 ( 44) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrVII:930827-931154 ( 14) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrVII:845302-846171 ( 4) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrIV:83456-83802 ( 10) GGGCCCCCGGTTCGATTCCGGGCTTGCGC 1 chrIII:123435-123741 ( 40) AGGTCCCGGGTTCGAGTCCCGGCTCGCCC 1 chrVIII:475556-475876 ( 41) AGGTCCCGAGTTCGATCCTCGGTTGGAAC 1 chrIV:488411-489173 ( 56) AGATCCCGAGTTCGAACCTCGGTTGGATC 1 chrXIII:195928-196287 ( 12) AGGCCCTGGGTTCAATTCCCAGCTCGCCC 1 chrXV:976293-976721 ( 7) AGGTCGAGAGTTCGAACCTCCCCTGGAGC 1 chrXIII:572279-573493 ( 48) AGGTCGAGAGTTCGAACCTCCCCTGGAGC 1 chrX:390873-391304 ( 6) AGGTCGAGAGTTCGAACCTCCCCTGGAGC 1 chrIV:1175629-1176090 ( 63) AGGTCGAGAGTTCGAACCTCCCCTGGAGC 1 chrXII:1051915-1052198 ( 66) GGATCAGCGGTTCGATCCCGCTAGAGACC 1 chrVII:738921-739504 ( 4) GGATCAGCGGTTCGATCCCGCTAGAGACC 1 chrIV:1016942-1017500 ( 37) GAGACCGGGGTTCGACTCCCCGCTTCGGA 1 chrXIII:807957-808540 ( 49) ACAACCCCAGTTCGAATCCGGGTGGGACC 1 chrXIII:480416-480789 ( 70) AGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrXII:448494-448835 ( 37) ACAACCCCGGTTCGAATCCGGGTAGGACC 1 chrX:414827-415197 ( 47) AGGTTAGGGGTTCGAGCCCCCTACAGGGC 1 chrIII:168090-168503 ( 56) ACAACCCCGGTTCGAATCCGGGTAGGACC 1 chrV:311739-312274 ( 68) AGGTCATCGGTTCGATTCCGGTTGCGTCC 1 chrXIII:586474-586890 ( 5) ACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrXI:307935-308392 ( 32) ACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrX:378246-378532 ( 65) ACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrVII:823366-823671 ( 58) ACGTCCCCAGTTCGATCCTGGGCGAAATC 1 chrV:130782-131397 ( 44) ACAACCCCGGTTCGAATCCGGGTAAGACC 1 chrXV:110877-111088 ( 31) GGGACACGGGTTCGATTCTCGTACCGCTC 1 chrXII:796993-797482 ( 33) GAGACCGGGGTTCGACTCCCCGTATCGGA 1 chrVII:541736-542133 ( 8) GAGACCGGGGTTCGACTCCCCGTATCGGA 1 chrIX:370259-370646 ( 57) GAGACCGGGGTTCGACTCCCCGTATCGGA 1 chrII:644985-645400 ( 67) GAGACCGGGGTTCGACTCCCCGTATCGGA 1 chrXVI:769018-769436 ( 31) ATGTCAGGGGTTCGAGCCCCCTATGAGGA 1 chrXII:875272-875666 ( 23) ATGTCAGGGGTTCGAGCCCCCTATGAGGA 1 chrVII:115342-115730 ( 68) ATGTCAGGGGTTCGAGCCCCCTATGAGGA 1 chrIV:359359-359971 ( 28) ATGTCAGGGGTTCGAGCCCCCTATGAGGA 1 chrX:538492-538753 ( 25) AGACTGCGGGTTCGAGTCCCGTACGGAAC 1 chrX:374200-374896 ( 9) AGATTATGGGTTCGACCCCCATCGTGAGT 1 chrX:355196-355723 ( 7) AGATTATGGGTTCGACCCCCATCGTGAGT 1 chrVII:828480-828968 ( 50) AGATTATGGGTTCGACCCCCATCGTGAGT 1 chrXVI:856768-857140 ( 41) AGGTCTCCGGTTCGATTCCGGACTCGTCC 1 chrXIII:320998-321294 ( 52) AGGTCTCCGGTTCGATTCCGGACTCGTCC 1 chrXV:353925-354255 ( 2) AGATCATCGGTTCAAATCCGATTGGAAGC 1 chrII:266247-266670 ( 13) AGATCATCGGTTCAAATCCGATTGGAAGC 1 chrXV:228026-228738 ( 43) AGATCGTGAGTTCAACCCTCACTGGGGTC 1 chrXI:74431-74869 ( 68) AGATCGTGAGTTCAACCCTCACTGGGGTC 1 chrVII:730998-731402 ( 31) AGATCGTGAGTTCAACCCTCACTGGGGTC 1 chrII:642869-643218 ( 15) TGGTCCTTAGTTCGATCCTGAGTGCGAGC 1 chrXIII:837722-838212 ( 70) AGATCGGGCGTTCGACTCGCCCCCGGGAG 1 chrXIII:168688-169010 ( 55) AGATCGGGCGTTCGACTCGCCCCCGGGAG 1 chrIV:946187-946582 ( 37) AGATCGGGCGTTCGACTCGCCCCCGGGAG 1 chrXVI:622338-622827 ( 9) AGGTCCTGTGTTCGATCCACAGAATTCGC 1 chrVII:440269-441152 ( 57) AGGTCCTGTGTTCGATCCACAGAATTCGC 1 chrXI:513076-513600 ( 45) CAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrX:204554-205039 ( 31) CAGATCGGGGTTCAATTCCCCGTCGCGGA 1 chrV:492232-492521 ( 27) AGATTCCAGGTTCAAGTCCTGGCGGGGAA 1 chrXVI:744106-744522 ( 62) AGGTCGTTAGTTCAATTCTGACAGGTGGC 1 chrIV:519674-519897 ( 59) GGATGCGAGGTTCGAACTCGCGCGGACAA 1 chrII:347435-347919 ( 27) GGATGCGAGGTTCGAACTCGCGCGGACAA 1 chrV:434408-434741 ( 18) GAAACCCTGGTTCGATTCTAGGAGATGGC 1 chrIII:149732-150237 ( 28) ATGTCCTCGGATCGAAACCGAGCGGCGCT 1 chrX:415724-416212 ( 14) GGGTTGCAGGTTCAATTCCTGTCCGTTTC 1 chrIV:386231-386634 ( 56) AGACCGAGTGTTCGTTCCTCCTTTAGCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCCBSGGTTCGATYCCSVKYKKGVGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 42840 bayes= 11.333 E= 9.9e-267 105 -266 73 -438 -138 -66 186 -206 21 -1271 176 -1271 -68 -8 -1271 101 -1271 212 -266 -106 -47 150 14 -338 -206 109 66 -47 -238 98 146 -279 -38 -208 183 -279 -1271 -1271 240 -1271 -438 -1271 -1271 166 -1271 -1271 -1271 169 -1271 240 -1271 -1271 -92 -1271 214 -1271 166 -1271 -1271 -438 -57 14 -49 53 -438 124 -1271 79 -1271 236 -1271 -338 -338 179 -208 -21 -438 146 119 -338 -57 98 114 -1271 -338 -21 150 -21 -57 138 -1271 -6 -121 -34 86 26 -92 -86 124 -13 -79 -66 173 -206 14 42 86 -238 -121 -8 150 -106 -57 183 -208 -206 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCCBSGGTTCGATYCCSVKYKKGVGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 67 E= 9.9e-267 0.641791 0.029851 0.313433 0.014925 0.119403 0.119403 0.686567 0.074627 0.358209 0.000000 0.641791 0.000000 0.194030 0.179104 0.000000 0.626866 0.000000 0.820896 0.029851 0.149254 0.223881 0.537313 0.208955 0.029851 0.074627 0.402985 0.298507 0.223881 0.059701 0.373134 0.522388 0.044776 0.238806 0.044776 0.671642 0.044776 0.000000 0.000000 1.000000 0.000000 0.014925 0.000000 0.000000 0.985075 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.164179 0.000000 0.835821 0.000000 0.985075 0.000000 0.000000 0.014925 0.208955 0.208955 0.134328 0.447761 0.014925 0.447761 0.000000 0.537313 0.000000 0.970149 0.000000 0.029851 0.029851 0.656716 0.044776 0.268657 0.014925 0.522388 0.432836 0.029851 0.208955 0.373134 0.417910 0.000000 0.029851 0.164179 0.537313 0.268657 0.208955 0.492537 0.000000 0.298507 0.134328 0.149254 0.343284 0.373134 0.164179 0.104478 0.447761 0.283582 0.179104 0.119403 0.626866 0.074627 0.343284 0.253731 0.343284 0.059701 0.134328 0.179104 0.537313 0.149254 0.208955 0.671642 0.044776 0.074627 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTCCBSGGTTCGATYCCSVKYKKGVGC MEME-1 regular expression -------------------------------------------------------------------------------- [AG]G[GA]TC[CAG][CGT][GC][GA]GTTCGA[TAC][TC]C[CT][CG][GCA][GT][CTA][TG][GT]G[AGC]G[CA] -------------------------------------------------------------------------------- Time 346.76 secs. ******************************************************************************** ******************************************************************************** MOTIF GSBBNNKTGGCYBAGTGGKWWAAGSSNHM MEME-2 width = 29 sites = 48 llr = 864 E-value = 8.0e-131 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSBBNNKTGGCYBAGTGGKWWAAGSSNHM MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::11222:2:::1a1:::13566:::423 pos.-specific C :43333::::764:::2::1:11155245 probability G 9532324:8a:12:9:5a51133744222 matrix T ::34234a::333::93:554:1211331 bits 2.4 * * 2.2 * * 1.9 * * * * 1.7 * *** ** * Relative 1.4 * **** ** * Entropy 1.2 * **** *** * * * (26.0 bits) 1.0 ** **** *** * * * 0.7 ** ***** *** ** * *** 0.5 ** ****** ****** * *** * 0.2 ***** ******************** * 0.0 ----------------------------- Multilevel GGTTCCTTGGCCCAGTGGTTAAAGCCACC consensus CCCGTG TTT T GATGG GGTTA sequence G T G GAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNNKTGGCYBAGTGGKWWAAGSSNHM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXVI:819112-819915 + 66 1.49e-13 ACAATAGAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTA chrXIV:602094-602525 + 53 1.49e-13 AGATAACAAT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrIX:183314-183724 - 16 1.49e-13 ACAAATTCCT GGTCTCTTGGCCCAGTTGGTTAAGGCACC GTGCTAATAA chrXII:731999-732252 + 15 2.94e-12 AACATACAAT GGGAGTTTGGCCGAGTGGTTTAAGGCGTC AGATTTAGGT chrX:617727-618089 + 61 2.94e-12 AACAAACAAT GGGAGTTTGGCCGAGTGGTTTAAGGCGTC AGATTTAGGT chrXVI:689367-689817 + 23 4.14e-11 GATTATTTTG GGCACTATGGCCGAGTGGTTAAGGCGACA GACTTGAAAT chrXII:656854-657193 - 5 4.80e-11 CAAGAAAATT GGGCGTGTGGCGTAGTCGGTAGCGCGCTC CCTT chrXII:962834-963264 - 28 5.54e-11 TATTATCGAC GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrX:424322-424704 - 24 5.54e-11 TAAATAAGAT GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrIV:519674-519897 + 8 5.54e-11 ATTTTAC GGAGGGTTGGCCGAGTGGTCTAAGGCGGC AGACTTAAGA chrXIII:259082-259360 - 40 7.35e-11 AAGTTAGTAT GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrXII:167780-168213 - 51 7.35e-11 ATAGTCATAT GGCAACTTGGCCGAGTGGTTAAGGCGAAA GATTAGAAAT chrVII:205329-205721 + 46 1.65e-10 ACAAATAAGT GGTTGTTTGGCCGAGCGGTCTAAGGCGCC TGATTCAAGA chrXIII:586474-586890 - 49 3.10e-10 AACTTACTAT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrXIII:420326-421023 - 9 3.10e-10 ACAAATAACA GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAAC chrX:378246-378532 + 21 3.10e-10 TAAATTAATA GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrVII:823366-823671 + 14 3.10e-10 CAATAAGAGT GGTTTCGTGGTCTAGTCGGTTATGGCATC TGCTTAACAC chrIV:1150751-1151170 - 3 3.50e-10 AAGTGTTTCA GTCCCAGTGGCCGAGTGGTTAAGGCGATG CC chrXV:353925-354255 - 45 3.94e-10 ACGGTTTACT GCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrXIV:104591-105025 + 47 3.94e-10 CAAGTTCTCA GCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrVIII:115867-116454 - 41 3.94e-10 CACTATTAGA GCTTCTATGGCCAAGTTGGTAAGGCGCCA CACTAGTAAT chrXI:83966-84415 + 68 7.06e-10 AAATTTGTAT GGAGGGTTGGCCGAGTGGTCTAATGCGGC AGAC chrXII:605160-605613 - 68 1.10e-09 AAAT GCTCGTGTAGCTCAGTGGTTAGAGCTTCG TGCTTATAGC chrXI:74431-74869 + 24 2.30e-09 ATAGCAATTA GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrIII:127599-127860 + 37 2.30e-09 AAGATAAAAT GACTCCATGGCCAAGTTGGTTAAGGCGTG CGACTGTTAA chrXV:300907-301290 + 49 2.54e-09 AGAAAAGATC GGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrI:139011-139343 + 25 2.54e-09 CAATTAGTAC GGGCGTGTGGTCTAGTGGTATGATTCTCG CTTTGGGCGA chrXVI:860138-860664 + 28 3.10e-09 TAAATAACAA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrXVI:572056-572534 + 24 3.10e-09 ACAATACTTC GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrVII:930827-931154 - 55 3.10e-09 TAATCAGTGA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrVI:162057-162386 + 57 3.10e-09 AAGAAAACAA GCGCAAGTGGTTTAGTGGTAAAATCCAAC GTTGCCATCG chrXIV:374730-375080 + 14 4.15e-09 AGAAAAATAA GCGGACTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrXVI:622338-622827 - 71 6.63e-09 T GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrII:36269-36506 + 61 6.63e-09 TCAGTTGTAA GCGGATTTAGCTCAGTTGGGAGAGCGCCA GACTGAAGAA chrX:390873-391304 - 49 9.50e-09 AAGAAATAGT GCTTCAGTAGCTCAGTAGGAAGAGCGTCA GTCTCATAAT chrIV:1175629-1176090 + 20 9.50e-09 ACAAAACAAA GCTTCAGTAGCTCAGTAGGAAGAGCGTCA GTCTCATAAT chrII:326538-327185 - 26 9.50e-09 TCGAGTTCCG GGTCCAATGGTCCAGTGGTTCAAGACGTC GCCTTTACAC chrXVI:744106-744522 + 20 3.84e-08 CAGTGTAAAA GCCTCCTTAGCTTAGTGGTAGAGCGTTGC ACTTGTAATG chrVII:1004007-1004387 + 69 3.84e-08 TCAAGGGTTT GCCTCCTTAGCTTAGTGGTAGAGCGTTGC ACT chrVII:115342-115730 + 2 4.15e-08 A TCCTTGTTAGCTCAGTTGGTAGAGCGTTC GGCTTTTAAG chrXIV:631743-632111 - 12 6.01e-08 AACTTCTACC GGGCGTGTGGTCTAGAGGTATGATTCTCG CTTAGGGTGC chrXVI:581851-582273 + 50 6.94e-08 CAACAAAAGA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrX:414827-415197 + 4 6.94e-08 TTA GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrVI:226326-227203 - 18 6.94e-08 AGATTAAAAT GCCTTGTTGGCGCAATCGGTAGCGCGTAT GACTCTTAAT chrX:517676-518104 - 16 1.29e-07 ATAAAAGTTA AGCGCCGTGGCGCAGTGGAAGCGCGCAGG GCTCATAACC chrV:99852-100400 + 57 1.29e-07 AAGTTGGCTA AGCGCCGTGGCGCAGTGGAAGCGCGCAGG GCTCATAACC chrII:642869-643218 - 57 1.29e-07 GTAATAGAAA GCTCGTATGGCGCAGTGGTAGCGCAGCAG ATTGCAAATC chrXV:274518-274939 + 3 4.92e-06 GT GGCCGAGTGGTTAAGGCGATGCCCTGCTA TTTCCTCAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNNKTGGCYBAGTGGKWWAAGSSNHM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:819112-819915 1.5e-13 65_[+2]_6 chrXIV:602094-602525 1.5e-13 52_[+2]_19 chrIX:183314-183724 1.5e-13 15_[-2]_56 chrXII:731999-732252 2.9e-12 14_[+2]_57 chrX:617727-618089 2.9e-12 60_[+2]_11 chrXVI:689367-689817 4.1e-11 22_[+2]_49 chrXII:656854-657193 4.8e-11 4_[-2]_67 chrXII:962834-963264 5.5e-11 27_[-2]_44 chrX:424322-424704 5.5e-11 23_[-2]_48 chrIV:519674-519897 5.5e-11 7_[+2]_64 chrXIII:259082-259360 7.4e-11 39_[-2]_32 chrXII:167780-168213 7.4e-11 50_[-2]_21 chrVII:205329-205721 1.6e-10 45_[+2]_26 chrXIII:586474-586890 3.1e-10 48_[-2]_23 chrXIII:420326-421023 3.1e-10 8_[-2]_63 chrX:378246-378532 3.1e-10 20_[+2]_51 chrVII:823366-823671 3.1e-10 13_[+2]_58 chrIV:1150751-1151170 3.5e-10 2_[-2]_69 chrXV:353925-354255 3.9e-10 44_[-2]_27 chrXIV:104591-105025 3.9e-10 46_[+2]_25 chrVIII:115867-116454 3.9e-10 40_[-2]_31 chrXI:83966-84415 7.1e-10 67_[+2]_4 chrXII:605160-605613 1.1e-09 67_[-2]_4 chrXI:74431-74869 2.3e-09 23_[+2]_48 chrIII:127599-127860 2.3e-09 36_[+2]_35 chrXV:300907-301290 2.5e-09 48_[+2]_23 chrI:139011-139343 2.5e-09 24_[+2]_47 chrXVI:860138-860664 3.1e-09 27_[+2]_44 chrXVI:572056-572534 3.1e-09 23_[+2]_48 chrVII:930827-931154 3.1e-09 54_[-2]_17 chrVI:162057-162386 3.1e-09 56_[+2]_15 chrXIV:374730-375080 4.2e-09 13_[+2]_58 chrXVI:622338-622827 6.6e-09 70_[-2]_1 chrII:36269-36506 6.6e-09 60_[+2]_11 chrX:390873-391304 9.5e-09 48_[-2]_23 chrIV:1175629-1176090 9.5e-09 19_[+2]_52 chrII:326538-327185 9.5e-09 25_[-2]_46 chrXVI:744106-744522 3.8e-08 19_[+2]_52 chrVII:1004007-1004387 3.8e-08 68_[+2]_3 chrVII:115342-115730 4.1e-08 1_[+2]_70 chrXIV:631743-632111 6e-08 11_[-2]_60 chrXVI:581851-582273 6.9e-08 49_[+2]_22 chrX:414827-415197 6.9e-08 3_[+2]_68 chrVI:226326-227203 6.9e-08 17_[-2]_54 chrX:517676-518104 1.3e-07 15_[-2]_56 chrV:99852-100400 1.3e-07 56_[+2]_15 chrII:642869-643218 1.3e-07 56_[-2]_15 chrXV:274518-274939 4.9e-06 2_[+2]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNNKTGGCYBAGTGGKWWAAGSSNHM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSBBNNKTGGCYBAGTGGKWWAAGSSNHM width=29 seqs=48 chrXVI:819112-819915 ( 66) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXIV:602094-602525 ( 53) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrIX:183314-183724 ( 16) GGTCTCTTGGCCCAGTTGGTTAAGGCACC 1 chrXII:731999-732252 ( 15) GGGAGTTTGGCCGAGTGGTTTAAGGCGTC 1 chrX:617727-618089 ( 61) GGGAGTTTGGCCGAGTGGTTTAAGGCGTC 1 chrXVI:689367-689817 ( 23) GGCACTATGGCCGAGTGGTTAAGGCGACA 1 chrXII:656854-657193 ( 5) GGGCGTGTGGCGTAGTCGGTAGCGCGCTC 1 chrXII:962834-963264 ( 28) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrX:424322-424704 ( 24) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrIV:519674-519897 ( 8) GGAGGGTTGGCCGAGTGGTCTAAGGCGGC 1 chrXIII:259082-259360 ( 40) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrXII:167780-168213 ( 51) GGCAACTTGGCCGAGTGGTTAAGGCGAAA 1 chrVII:205329-205721 ( 46) GGTTGTTTGGCCGAGCGGTCTAAGGCGCC 1 chrXIII:586474-586890 ( 49) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrXIII:420326-421023 ( 9) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrX:378246-378532 ( 21) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrVII:823366-823671 ( 14) GGTTTCGTGGTCTAGTCGGTTATGGCATC 1 chrIV:1150751-1151170 ( 3) GTCCCAGTGGCCGAGTGGTTAAGGCGATG 1 chrXV:353925-354255 ( 45) GCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrXIV:104591-105025 ( 47) GCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrVIII:115867-116454 ( 41) GCTTCTATGGCCAAGTTGGTAAGGCGCCA 1 chrXI:83966-84415 ( 68) GGAGGGTTGGCCGAGTGGTCTAATGCGGC 1 chrXII:605160-605613 ( 68) GCTCGTGTAGCTCAGTGGTTAGAGCTTCG 1 chrXI:74431-74869 ( 24) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrIII:127599-127860 ( 37) GACTCCATGGCCAAGTTGGTTAAGGCGTG 1 chrXV:300907-301290 ( 49) GGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrI:139011-139343 ( 25) GGGCGTGTGGTCTAGTGGTATGATTCTCG 1 chrXVI:860138-860664 ( 28) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXVI:572056-572534 ( 24) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrVII:930827-931154 ( 55) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrVI:162057-162386 ( 57) GCGCAAGTGGTTTAGTGGTAAAATCCAAC 1 chrXIV:374730-375080 ( 14) GCGGACTTAGCTCAGTTGGGAGAGCGCCA 1 chrXVI:622338-622827 ( 71) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrII:36269-36506 ( 61) GCGGATTTAGCTCAGTTGGGAGAGCGCCA 1 chrX:390873-391304 ( 49) GCTTCAGTAGCTCAGTAGGAAGAGCGTCA 1 chrIV:1175629-1176090 ( 20) GCTTCAGTAGCTCAGTAGGAAGAGCGTCA 1 chrII:326538-327185 ( 26) GGTCCAATGGTCCAGTGGTTCAAGACGTC 1 chrXVI:744106-744522 ( 20) GCCTCCTTAGCTTAGTGGTAGAGCGTTGC 1 chrVII:1004007-1004387 ( 69) GCCTCCTTAGCTTAGTGGTAGAGCGTTGC 1 chrVII:115342-115730 ( 2) TCCTTGTTAGCTCAGTTGGTAGAGCGTTC 1 chrXIV:631743-632111 ( 12) GGGCGTGTGGTCTAGAGGTATGATTCTCG 1 chrXVI:581851-582273 ( 50) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrX:414827-415197 ( 4) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrVI:226326-227203 ( 18) GCCTTGTTGGCGCAATCGGTAGCGCGTAT 1 chrX:517676-518104 ( 16) AGCGCCGTGGCGCAGTGGAAGCGCGCAGG 1 chrV:99852-100400 ( 57) AGCGCCGTGGCGCAGTGGAAGCGCGCAGG 1 chrII:642869-643218 ( 57) GCTCGTATGGCGCAGTGGTAGCGCAGCAG 1 chrXV:274518-274939 ( 3) GGCCGAGTGGTTAAGGCGATGCCCTGCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNNKTGGCYBAGTGGKWWAAGSSNHM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 42840 bayes= 11.7082 E= 8.0e-131 -290 -1223 231 -389 -290 114 146 -389 -190 72 52 10 -158 82 -1 27 -73 62 62 -44 -73 82 -18 1 -90 -1223 106 49 -1223 -1223 -1223 169 -73 -1223 210 -1223 -1223 -1223 240 -1223 -1223 195 -1223 -20 -1223 157 -38 -9 -131 90 28 -9 169 -1223 -1223 -1223 -231 -1223 231 -1223 -389 -318 -318 159 -290 -1 146 -31 -1223 -1223 240 -1223 -231 -1223 128 62 -9 -86 -160 80 56 -318 -60 35 101 -118 62 -1223 86 -86 40 -190 -1223 -60 190 -90 -290 128 114 -190 -1223 152 106 -231 19 -1 14 -31 -58 90 -18 -20 -31 134 14 -231 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNNKTGGCYBAGTGGKWWAAGSSNHM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 48 E= 8.0e-131 0.041667 0.000000 0.937500 0.020833 0.041667 0.416667 0.520833 0.020833 0.083333 0.312500 0.270833 0.333333 0.104167 0.333333 0.187500 0.375000 0.187500 0.291667 0.291667 0.229167 0.187500 0.333333 0.166667 0.312500 0.166667 0.000000 0.395833 0.437500 0.000000 0.000000 0.000000 1.000000 0.187500 0.000000 0.812500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.729167 0.000000 0.270833 0.000000 0.562500 0.145833 0.291667 0.125000 0.354167 0.229167 0.291667 1.000000 0.000000 0.000000 0.000000 0.062500 0.000000 0.937500 0.000000 0.020833 0.020833 0.020833 0.937500 0.041667 0.187500 0.520833 0.250000 0.000000 0.000000 1.000000 0.000000 0.062500 0.000000 0.458333 0.479167 0.291667 0.104167 0.062500 0.541667 0.458333 0.020833 0.125000 0.395833 0.625000 0.083333 0.291667 0.000000 0.562500 0.104167 0.250000 0.083333 0.000000 0.125000 0.708333 0.166667 0.041667 0.458333 0.416667 0.083333 0.000000 0.541667 0.395833 0.062500 0.354167 0.187500 0.208333 0.250000 0.208333 0.354167 0.166667 0.270833 0.250000 0.479167 0.208333 0.062500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSBBNNKTGGCYBAGTGGKWWAAGSSNHM MEME-2 regular expression -------------------------------------------------------------------------------- G[GC][TCG][TC][CGT][CT][TG]TGG[CT][CT][CTG]AGT[GT]G[TG][TA][AT][AG][AG]G[CG][CG][ATG][CTA][CAG] -------------------------------------------------------------------------------- Time 657.16 secs. ******************************************************************************** ******************************************************************************** MOTIF CSGYGAVAASSDVAYGTGMTRRCCRYTA MEME-3 width = 28 sites = 29 llr = 508 E-value = 5.2e-047 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSGYGAVAASSDVAYGTGMTRRCCRYTA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2:2::6387::32613:15:66::5:18 pos.-specific C 65:43:3::4512251213:::99:31: probability G 256:723136534217:52:431151:2 matrix T ::26:111:::22:3:82:a:1:::69: bits 2.4 2.2 1.9 ** 1.7 * ** Relative 1.4 * * * ** Entropy 1.2 * * ** * ** (25.2 bits) 1.0 * ** **** ** * *** ** 0.7 ***** **** * ** ** ****** 0.5 ****** **** *************** 0.2 *********** **************** 0.0 ---------------------------- Multilevel CGGTGACAAGCGGACGTGATAACCATTA consensus GCACCGA GCGACGTACTC GG GC G sequence T G TA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGYGAVAASSDVAYGTGMTRRCCRYTA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------- chrIV:1016942-1017500 + 68 3.77e-13 CCGGTCTCCA CGGTGAGAACGTGATGTGATAGCCGTTA CACTA chrXIII:290432-291153 - 71 1.94e-12 CA CGGTGAAAGCGTGATGTGATAGCCGTTA CACTATATCG chrXII:796993-797482 - 3 1.94e-12 CCGGTCTCCA CGGTGAAAGCGTGATGTGATAGCCGTTA CA chrV:354705-355180 - 54 1.94e-12 CCGGTCTCCA CGGTGAAAGCGTGATGTGATAGCCGTTA CACTATATCG chrIX:370259-370646 - 27 1.94e-12 CCGGTCTCCA CGGTGAAAGCGTGATGTGATAGCCGTTA CACTATATCG chrII:644985-645400 - 37 1.94e-12 CCGGTCTCCA CGGTGAAAGCGTGATGTGATAGCCGTTA CACTATATCG chrVIII:475556-475876 + 73 1.34e-11 GGGACCTTTG CCGTGTGAAGGCAACGTGATAGCCGCTA chrIV:1075334-1075749 + 14 1.34e-11 GGGACCTTTG CCGTGTGAAGGCAACGTGATAGCCGCTA CACTATTGGA chrXIII:463240-463902 - 45 2.36e-10 CCGATCTGGC ACGCGACAAGCGCCCATTCTGACCATTA AACTATCACG chrXII:426864-427418 - 53 2.36e-10 CCGATCTGGC ACGCGACAAGCGCCCATTCTGACCATTA AACTATCACG chrX:355196-355723 - 59 2.36e-10 CCGATCTGGC ACGCGACAAGCGCCCATTCTGACCATTA AACTATCACG chrX:204554-205039 - 1 2.36e-10 CCGATCTGGC ACGCGACAAGCGCCCATTCTGACCATTA chrVII:531417-531787 - 70 2.36e-10 GGC ACGCGACAAGCGCCCATTCTGACCATTA AACTATCACG chrV:434408-434741 + 49 1.10e-09 AGGGTTTCAT CGGCCACAACGATGTGTACTAACCACTA TACTAAGATG chrXII:448494-448835 + 68 1.52e-09 GGGGTTGTCC GGATCAAAACCGAAAGTGATAACCACTA CACTA chrIV:802591-803004 + 16 1.52e-09 GGGGTTGTCC GGATCAAAACCGAAAGTGATAACCACTA CACTATAGGA chrXV:110877-111088 + 62 2.82e-09 CGTGTCCCCA CCTTGGAAGGGTGGGATGATAACCACTA CACTAACCGC chrXI:490758-491181 - 61 2.22e-08 GGAATCTTCT GGTTCGTAGCCAGACGCCGTGACCATTG GGCCACGAGG chrX:233625-234236 - 71 2.22e-08 CT GGTTCGTAGCCAGACGCCGTGACCATTG GGCCACGAGG chrV:492232-492521 + 59 2.22e-08 GGAATCTTCT GGTTCGTAGCCAGACGCCGTGACCATTG GGCCACGAGG chrVI:225036-225431 + 31 3.82e-08 CGCTTGTCAT CGTCCACGAGCGCGCCCGATGACCGTCG CTTACTCAGC chrXII:818545-818705 - 46 5.51e-08 CGGATCACAG CCACCGGAAGAATGCATGCTAACCATTG CACTAGAGGA chrIV:1256872-1257269 + 20 5.51e-08 CGGGCCCCAT GCTTGGGAAGCATGAATTCTAACCACTG AACCACTTTC chrXVI:856768-857140 - 10 1.50e-07 GAGACCTCTC CCATGCTAAGGGAGCGCGCTACCGACTA CGCCACACG chrXIV:392263-392763 + 35 2.29e-07 CCGAGATAGC CCGCGGCAAAGATACGTTATCTCGGTTA TCGTCGGCAA chrVIII:554122-554728 + 3 4.43e-07 CT CCACAAGTAGCGAAAGCAATGGCCGCCA TTAGAGACTA chrXII:459643-460694 - 65 6.97e-07 TGGCGACG CGGCGACGCGGCGACGCGGTATGCGGAG TTGTAAGATG chrXI:244763-245442 + 47 9.26e-07 TTCTGGTCGA CCGTGAGTAGCCCATCTAGTATGCGCAA TACCACAATG chrX:523925-524460 - 58 9.69e-07 TTGTGATGTA TGATGTGTAGGATAGGTAATGACCGGTA AATCAAGCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGYGAVAASSDVAYGTGMTRRCCRYTA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1016942-1017500 3.8e-13 67_[+3]_5 chrXIII:290432-291153 1.9e-12 70_[-3]_2 chrXII:796993-797482 1.9e-12 2_[-3]_70 chrV:354705-355180 1.9e-12 53_[-3]_19 chrIX:370259-370646 1.9e-12 26_[-3]_46 chrII:644985-645400 1.9e-12 36_[-3]_36 chrVIII:475556-475876 1.3e-11 72_[+3] chrIV:1075334-1075749 1.3e-11 13_[+3]_59 chrXIII:463240-463902 2.4e-10 44_[-3]_28 chrXII:426864-427418 2.4e-10 52_[-3]_20 chrX:355196-355723 2.4e-10 58_[-3]_14 chrX:204554-205039 2.4e-10 [-3]_72 chrVII:531417-531787 2.4e-10 69_[-3]_3 chrV:434408-434741 1.1e-09 48_[+3]_24 chrXII:448494-448835 1.5e-09 67_[+3]_5 chrIV:802591-803004 1.5e-09 15_[+3]_57 chrXV:110877-111088 2.8e-09 61_[+3]_11 chrXI:490758-491181 2.2e-08 60_[-3]_12 chrX:233625-234236 2.2e-08 70_[-3]_2 chrV:492232-492521 2.2e-08 58_[+3]_14 chrVI:225036-225431 3.8e-08 30_[+3]_42 chrXII:818545-818705 5.5e-08 45_[-3]_27 chrIV:1256872-1257269 5.5e-08 19_[+3]_53 chrXVI:856768-857140 1.5e-07 9_[-3]_63 chrXIV:392263-392763 2.3e-07 34_[+3]_38 chrVIII:554122-554728 4.4e-07 2_[+3]_70 chrXII:459643-460694 7e-07 64_[-3]_8 chrXI:244763-245442 9.3e-07 46_[+3]_26 chrX:523925-524460 9.7e-07 57_[-3]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGYGAVAASSDVAYGTGMTRRCCRYTA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSGYGAVAASSDVAYGTGMTRRCCRYTA width=28 seqs=29 chrIV:1016942-1017500 ( 68) CGGTGAGAACGTGATGTGATAGCCGTTA 1 chrXIII:290432-291153 ( 71) CGGTGAAAGCGTGATGTGATAGCCGTTA 1 chrXII:796993-797482 ( 3) CGGTGAAAGCGTGATGTGATAGCCGTTA 1 chrV:354705-355180 ( 54) CGGTGAAAGCGTGATGTGATAGCCGTTA 1 chrIX:370259-370646 ( 27) CGGTGAAAGCGTGATGTGATAGCCGTTA 1 chrII:644985-645400 ( 37) CGGTGAAAGCGTGATGTGATAGCCGTTA 1 chrVIII:475556-475876 ( 73) CCGTGTGAAGGCAACGTGATAGCCGCTA 1 chrIV:1075334-1075749 ( 14) CCGTGTGAAGGCAACGTGATAGCCGCTA 1 chrXIII:463240-463902 ( 45) ACGCGACAAGCGCCCATTCTGACCATTA 1 chrXII:426864-427418 ( 53) ACGCGACAAGCGCCCATTCTGACCATTA 1 chrX:355196-355723 ( 59) ACGCGACAAGCGCCCATTCTGACCATTA 1 chrX:204554-205039 ( 1) ACGCGACAAGCGCCCATTCTGACCATTA 1 chrVII:531417-531787 ( 70) ACGCGACAAGCGCCCATTCTGACCATTA 1 chrV:434408-434741 ( 49) CGGCCACAACGATGTGTACTAACCACTA 1 chrXII:448494-448835 ( 68) GGATCAAAACCGAAAGTGATAACCACTA 1 chrIV:802591-803004 ( 16) GGATCAAAACCGAAAGTGATAACCACTA 1 chrXV:110877-111088 ( 62) CCTTGGAAGGGTGGGATGATAACCACTA 1 chrXI:490758-491181 ( 61) GGTTCGTAGCCAGACGCCGTGACCATTG 1 chrX:233625-234236 ( 71) GGTTCGTAGCCAGACGCCGTGACCATTG 1 chrV:492232-492521 ( 59) GGTTCGTAGCCAGACGCCGTGACCATTG 1 chrVI:225036-225431 ( 31) CGTCCACGAGCGCGCCCGATGACCGTCG 1 chrXII:818545-818705 ( 46) CCACCGGAAGAATGCATGCTAACCATTG 1 chrIV:1256872-1257269 ( 20) GCTTGGGAAGCATGAATTCTAACCACTG 1 chrXVI:856768-857140 ( 10) CCATGCTAAGGGAGCGCGCTACCGACTA 1 chrXIV:392263-392763 ( 35) CCGCGGCAAAGATACGTTATCTCGGTTA 1 chrVIII:554122-554728 ( 3) CCACAAGTAGCGAAAGCAATGGCCGCCA 1 chrXII:459643-460694 ( 65) CGGCGACGCGGCGACGCGGTATGCGGAG 1 chrXI:244763-245442 ( 47) CCGTGAGTAGCCCATCTAGTATGCGCAA 1 chrX:523925-524460 ( 58) TGATGTGTAGGATAGGTAATGACCGGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGYGAVAASSDVAYGTGMTRRCCRYTA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 43435 bayes= 11.7974 E= 5.2e-047 -85 163 13 -317 -1150 135 145 -1150 -59 -1150 163 -59 -1150 100 -1150 100 -317 54 186 -1150 100 -245 35 -159 -17 71 54 -117 141 -1150 -146 -159 108 -245 71 -1150 -317 113 154 -1150 -317 135 135 -1150 -17 -46 86 -36 -59 35 100 -85 100 -13 13 -1150 -117 145 -146 -17 -17 -146 179 -1150 -1150 35 -1150 129 -117 -87 145 -36 74 71 -13 -1150 -1150 -1150 -1150 169 92 -245 100 -1150 83 -245 71 -159 -1150 230 -146 -1150 -1150 230 -146 -1150 74 -1150 135 -1150 -1150 86 -146 92 -217 -146 -1150 147 129 -1150 35 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGYGAVAASSDVAYGTGMTRRCCRYTA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 29 E= 5.2e-047 0.172414 0.586207 0.206897 0.034483 0.000000 0.482759 0.517241 0.000000 0.206897 0.000000 0.586207 0.206897 0.000000 0.379310 0.000000 0.620690 0.034483 0.275862 0.689655 0.000000 0.620690 0.034483 0.241379 0.103448 0.275862 0.310345 0.275862 0.137931 0.827586 0.000000 0.068966 0.103448 0.655172 0.034483 0.310345 0.000000 0.034483 0.413793 0.551724 0.000000 0.034483 0.482759 0.482759 0.000000 0.275862 0.137931 0.344828 0.241379 0.206897 0.241379 0.379310 0.172414 0.620690 0.172414 0.206897 0.000000 0.137931 0.517241 0.068966 0.275862 0.275862 0.068966 0.655172 0.000000 0.000000 0.241379 0.000000 0.758621 0.137931 0.103448 0.517241 0.241379 0.517241 0.310345 0.172414 0.000000 0.000000 0.000000 0.000000 1.000000 0.586207 0.034483 0.379310 0.000000 0.551724 0.034483 0.310345 0.103448 0.000000 0.931034 0.068966 0.000000 0.000000 0.931034 0.068966 0.000000 0.517241 0.000000 0.482759 0.000000 0.000000 0.344828 0.068966 0.586207 0.068966 0.068966 0.000000 0.862069 0.758621 0.000000 0.241379 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGYGAVAASSDVAYGTGMTRRCCRYTA MEME-3 regular expression -------------------------------------------------------------------------------- [CG][GC][GAT][TC][GC][AG][CAG]A[AG][GC][CG][GAT][GCA][AG][CT][GA][TC][GT][AC]T[AG][AG]CC[AG][TC]T[AG] -------------------------------------------------------------------------------- Time 968.05 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:71733-73614 7.77e-01 100 chrI:139011-139343 9.88e-07 24_[+2(2.54e-09)]_47 chrI:141178-141985 1.14e-01 69_[-1(5.47e-05)]_2 chrI:147594-147979 3.77e-02 69_[+2(4.88e-05)]_2 chrI:166193-166613 9.25e-01 100 chrI:180963-181442 4.31e-01 100 chrI:182167-183178 9.99e-01 100 chrII:9366-10169 9.60e-01 100 chrII:36269-36506 2.47e-05 60_[+2(6.63e-09)]_11 chrII:45596-46610 8.69e-01 100 chrII:87967-88580 5.41e-01 100 chrII:88955-89477 9.84e-01 100 chrII:197157-197780 7.55e-01 100 chrII:226999-227332 1.51e-01 100 chrII:228100-230467 9.90e-01 100 chrII:236492-237342 8.77e-01 100 chrII:237903-238142 5.46e-01 100 chrII:254206-255839 9.54e-01 100 chrII:256128-257867 9.11e-01 100 chrII:266247-266670 2.31e-06 12_[+1(1.14e-09)]_59 chrII:326538-327185 1.29e-06 25_[-2(9.50e-09)]_46 chrII:347435-347919 4.12e-04 26_[-1(7.24e-08)]_45 chrII:350472-350991 8.40e-01 100 chrII:392930-395305 9.80e-01 100 chrII:405554-406240 7.84e-03 30_[+2(1.19e-05)]_41 chrII:444721-445211 2.96e-01 100 chrII:477171-477741 3.67e-01 100 chrII:591604-591788 8.00e-01 100 chrII:592348-592725 3.41e-01 100 chrII:604475-605770 6.81e-01 100 chrII:612259-614096 1.07e-01 100 chrII:642869-643218 2.96e-09 14_[-1(6.71e-09)]_13_[-2(1.29e-07)]_\ 15 chrII:644985-645400 5.68e-15 36_[-3(1.94e-12)]_2_[+1(2.52e-10)]_\ 5 chrII:680378-681927 8.50e-01 100 chrII:706977-707389 9.12e-01 100 chrII:801680-802276 7.12e-01 100 chrIII:624-1016 3.55e-02 62_[-3(9.08e-05)]_10 chrIII:14001-15107 3.41e-01 100 chrIII:15323-16911 5.52e-02 100 chrIII:81412-82689 1.80e-01 100 chrIII:107123-107807 9.67e-01 100 chrIII:123435-123741 3.92e-11 39_[-1(1.72e-14)]_32 chrIII:127599-127860 1.34e-05 36_[+2(2.30e-09)]_35 chrIII:137652-139577 8.51e-01 100 chrIII:141431-141652 9.54e-02 100 chrIII:142142-142967 8.20e-01 100 chrIII:149732-150237 5.35e-04 27_[+1(1.88e-07)]_44 chrIII:150911-151594 9.52e-01 100 chrIII:161977-163338 7.95e-01 100 chrIII:168090-168503 3.58e-07 55_[-1(3.67e-11)]_16 chrIII:177108-178232 2.92e-01 100 chrIII:227772-228479 6.27e-01 100 chrIII:295327-296010 4.13e-01 100 chrIII:304945-305095 3.84e-04 20_[+1(2.50e-05)]_51 chrIII:305272-306076 1.94e-01 100 chrIV:45203-46212 5.41e-01 100 chrIV:83456-83802 1.03e-10 9_[+1(3.25e-15)]_62 chrIV:128953-129202 7.89e-01 100 chrIV:129360-129631 5.66e-01 100 chrIV:129917-130577 1.65e-01 100 chrIV:132341-133234 4.86e-01 100 chrIV:210009-210633 1.37e-02 56_[+1(1.75e-05)]_15 chrIV:220869-221905 1.69e-01 100 chrIV:306676-307729 3.02e-01 100 chrIV:308419-310167 8.16e-01 100 chrIV:322206-323607 6.53e-01 100 chrIV:331043-333301 1.59e-01 100 chrIV:333489-333682 9.18e-01 100 chrIV:359359-359971 4.41e-06 27_[+1(3.45e-10)]_44 chrIV:382028-384757 9.33e-03 67_[-1(2.41e-05)]_4 chrIV:386231-386634 3.00e-03 55_[-1(8.02e-07)]_16 chrIV:410217-410757 9.63e-02 100 chrIV:415175-415433 6.67e-01 100 chrIV:415611-417572 4.27e-01 100 chrIV:434123-435136 4.74e-01 100 chrIV:437542-439334 8.26e-01 100 chrIV:465186-467638 9.74e-01 100 chrIV:488411-489173 1.06e-07 55_[-1(9.10e-12)]_16 chrIV:491583-492701 9.15e-01 100 chrIV:519674-519897 1.86e-11 7_[+2(5.54e-11)]_22_[-1(7.24e-08)]_\ 13 chrIV:520665-521094 8.68e-01 100 chrIV:541188-541879 2.80e-01 100 chrIV:555393-556631 4.67e-02 28_[+2(5.20e-05)]_43 chrIV:568295-569342 3.43e-01 100 chrIV:579402-580710 3.20e-01 100 chrIV:601241-602408 9.37e-01 100 chrIV:619667-620183 9.44e-01 100 chrIV:644818-645333 8.92e-01 100 chrIV:655712-657493 4.11e-01 100 chrIV:667691-668172 4.34e-01 100 chrIV:758785-759652 3.61e-01 100 chrIV:768361-768996 4.08e-01 100 chrIV:802591-803004 5.90e-08 15_[+3(1.52e-09)]_57 chrIV:884290-884571 7.74e-01 100 chrIV:891876-893326 6.38e-01 100 chrIV:915055-916236 4.69e-01 100 chrIV:946187-946582 2.52e-06 36_[+1(7.28e-09)]_35 chrIV:974105-974943 9.87e-01 100 chrIV:976515-977119 1.61e-01 100 chrIV:980786-981160 9.94e-02 100 chrIV:992713-993236 4.94e-02 23_[+3(5.14e-05)]_49 chrIV:1016942-1017500 1.62e-16 36_[-1(2.87e-11)]_2_[+3(3.77e-13)]_\ 5 chrIV:1075334-1075749 1.84e-08 13_[+3(1.34e-11)]_59 chrIV:1095004-1095645 4.87e-01 100 chrIV:1150751-1151170 3.92e-06 2_[-2(3.50e-10)]_69 chrIV:1175629-1176090 1.03e-12 19_[+2(9.50e-09)]_14_[+1(1.98e-11)]_\ 9 chrIV:1200911-1201972 9.97e-01 100 chrIV:1231891-1233106 4.01e-01 100 chrIV:1233340-1235600 1.01e-01 100 chrIV:1236393-1238940 5.44e-01 100 chrIV:1239353-1240442 8.87e-01 100 chrIV:1256872-1257269 1.90e-06 19_[+3(5.51e-08)]_53 chrIV:1269928-1271013 2.55e-01 100 chrIV:1301644-1302630 9.94e-01 100 chrIV:1304877-1305770 7.77e-01 100 chrIV:1328792-1330040 4.16e-01 100 chrIV:1352400-1353435 4.38e-01 100 chrIV:1354557-1355565 8.06e-01 100 chrIV:1359872-1361320 2.49e-01 100 chrIV:1401702-1403394 3.29e-01 100 chrIV:1404052-1404201 4.87e-01 100 chrIV:1449794-1450400 9.79e-01 100 chrIV:1450622-1450835 7.65e-01 100 chrIV:1461474-1461821 3.26e-01 100 chrIV:1488179-1488708 3.98e-01 100 chrIV:1488948-1490380 6.03e-01 100 chrIV:1502192-1502782 5.56e-01 100 chrIX:23801-25260 6.61e-01 100 chrIX:83398-84677 7.62e-01 100 chrIX:98690-99378 9.71e-01 100 chrIX:174805-175484 4.47e-01 100 chrIX:183314-183724 3.28e-09 15_[-2(1.49e-13)]_56 chrIX:197267-197738 7.44e-01 100 chrIX:210543-211415 9.84e-02 100 chrIX:231280-231663 9.30e-01 100 chrIX:231813-232311 9.98e-01 100 chrIX:248514-248943 1.68e-01 100 chrIX:255003-257087 8.56e-01 100 chrIX:300014-300662 9.46e-01 100 chrIX:315393-316470 7.22e-01 100 chrIX:317810-318286 8.88e-01 100 chrIX:323601-324331 2.09e-01 100 chrIX:325761-326206 7.27e-01 100 chrIX:335998-336619 1.59e-01 100 chrIX:370259-370646 5.68e-15 26_[-3(1.94e-12)]_2_[+1(2.52e-10)]_\ 15 chrIX:391795-392131 8.96e-02 100 chrV:51873-53110 9.99e-01 100 chrV:61057-62152 5.22e-01 100 chrV:66987-69456 5.20e-01 100 chrV:78090-79495 1.69e-01 100 chrV:85144-87403 9.74e-01 100 chrV:99852-100400 1.44e-04 56_[+2(1.29e-07)]_15 chrV:100831-101577 4.48e-01 100 chrV:117193-118454 2.27e-01 100 chrV:130782-131397 1.27e-06 43_[-1(1.82e-10)]_28 chrV:135111-135606 6.50e-01 100 chrV:138318-140438 6.39e-01 100 chrV:167088-167611 4.13e-01 100 chrV:176877-177517 4.73e-01 100 chrV:235336-236907 3.54e-01 100 chrV:249835-250537 1.30e-01 14_[-1(5.84e-05)]_57 chrV:266337-268214 4.93e-01 100 chrV:269214-269853 5.53e-01 100 chrV:270044-270193 9.90e-01 100 chrV:282336-284236 6.03e-01 100 chrV:288070-288711 9.84e-01 100 chrV:311739-312274 5.86e-07 67_[-1(7.45e-11)]_4 chrV:322058-323645 9.56e-01 100 chrV:354705-355180 3.54e-08 53_[-3(1.94e-12)]_19 chrV:363639-364796 4.94e-01 100 chrV:396754-397944 2.61e-02 100 chrV:423522-425284 1.00e+00 100 chrV:431022-431480 1.49e-02 34_[-1(9.74e-05)]_37 chrV:434408-434741 2.53e-10 17_[-1(1.01e-07)]_2_[+3(1.10e-09)]_\ 24 chrV:435702-436000 9.65e-01 100 chrV:436159-436378 8.99e-01 100 chrV:441827-442577 4.41e-01 100 chrV:442973-443354 3.79e-01 100 chrV:469025-469686 8.75e-01 100 chrV:476093-477892 9.62e-01 100 chrV:486960-487552 9.71e-01 100 chrV:491540-491976 2.76e-01 100 chrV:492232-492521 7.33e-13 26_[-1(1.49e-08)]_3_[+3(2.22e-08)]_\ 14 chrV:550879-551512 6.83e-01 100 chrVI:52728-54446 3.44e-01 100 chrVI:64061-64966 1.48e-01 100 chrVI:82478-83790 8.98e-01 100 chrVI:83999-84700 7.99e-01 100 chrVI:101166-101460 1.36e-01 100 chrVI:136720-137664 7.36e-01 100 chrVI:157918-158227 8.59e-01 100 chrVI:158384-158531 9.15e-01 100 chrVI:162057-162386 2.88e-06 56_[+2(3.10e-09)]_15 chrVI:167326-167992 7.21e-01 100 chrVI:180591-181232 9.81e-01 100 chrVI:190572-191936 1.94e-01 100 chrVI:210521-211036 8.75e-01 100 chrVI:225036-225431 3.43e-05 30_[+3(3.82e-08)]_42 chrVI:226326-227203 2.67e-05 17_[-2(6.94e-08)]_54 chrVII:300-955 2.51e-01 100 chrVII:1119-2305 7.93e-01 100 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