Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/AWRI1631--TEC1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.061899 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/AWRI1631--TEC1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.062476 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/AWRI1631--TEC1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.081587 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.013345 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.065221 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/AWRI1631--TEC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/background Finished invoke: name: bg status: 0 time: 0.018126 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 1175.723023 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 36.055138 Invoking: centrimo -seqlen 412 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/AWRI1631--TEC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.181006 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.327645 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/background -primary BSGGRWTCGAACCSVGGAYCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/AWRI1631--TEC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.745477 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/background -primary GGCCVAGTGGKTTAAGGCGYCAGAYT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/AWRI1631--TEC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.314002 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/background -primary KDTAGYGYARTGGKTAKMRCGTHHS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/AWRI1631--TEC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.398522 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/background -primary AARAAAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/AWRI1631--TEC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.518533 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/background -primary CRGTAGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/AWRI1631--TEC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.349595 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/background -primary ACCWCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/AWRI1631--TEC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.574575 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/background -primary SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/AWRI1631--TEC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.501192 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/background -primary CACCAKC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/AWRI1631--TEC1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.361859 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/background --motif BSGGRWTCGAACCSVGGAYCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/AWRI1631--TEC1.fa Finished invoke: name: fimo1 status: 0 time: 0.523176 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/background --motif GGCCVAGTGGKTTAAGGCGYCAGAYT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/AWRI1631--TEC1.fa Finished invoke: name: fimo2 status: 0 time: 0.498281 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/background --motif KDTAGYGYARTGGKTAKMRCGTHHS /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/AWRI1631--TEC1.fa Finished invoke: name: fimo3 status: 0 time: 0.501966 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/background --motif AARAAAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/AWRI1631--TEC1.fa Finished invoke: name: fimo4 status: 0 time: 0.404318 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/background --motif CRGTAGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/AWRI1631--TEC1.fa Finished invoke: name: fimo5 status: 0 time: 0.37684 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/background --motif ACCWCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/AWRI1631--TEC1.fa Finished invoke: name: fimo6 status: 0 time: 0.392091 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/background --motif SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/AWRI1631--TEC1.fa Finished invoke: name: fimo7 status: 0 time: 0.375243 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/background --motif CACCAKC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/AWRI1631--TEC1.fa Finished invoke: name: fimo8 status: 0 time: 0.394791 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/summary.tsv Finished invoke: name: summary status: 0 time: 0.441253 Done