******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:301104-301671 1.0000 100 chrVIII:237417-238162 1.0000 100 chrXIV:771802-772402 1.0000 100 chrVII:147927-149483 1.0000 100 chrXI:230936-231632 1.0000 100 chrI:138947-139355 1.0000 100 chrIV:1305251-1306192 1.0000 100 chrXVI:822643-824255 1.0000 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1.0000 100 chrX:745006-745106 1.0000 100 chrVII:783789-785724 1.0000 100 chrIV:132390-133655 1.0000 100 chrXII:611412-612129 1.0000 100 chrIV:1201566-1202014 1.0000 100 chrVIII:265912-267069 1.0000 100 chrV:435612-436002 1.0000 100 chrIV:1095132-1095657 1.0000 100 chrXIV:575108-577560 1.0000 100 chrVIII:214145-214335 1.0000 100 chrVII:227293-228539 1.0000 100 chrVI:76211-77053 1.0000 100 chrII:256144-257858 1.0000 100 chrIV:129380-130973 1.0000 100 chrX:73438-73538 1.0000 100 chrX:391795-391895 1.0000 100 chrXII:731450-732309 1.0000 100 chrXII:948937-954792 1.0000 100 chrX:651858-651958 1.0000 100 chrXI:158237-159758 1.0000 100 chrXIV:351040-353091 1.0000 100 chrXII:962809-963304 1.0000 100 chrI:81906-82284 1.0000 100 chrXIII:290555-291637 1.0000 100 chrXI:518705-521165 1.0000 100 chrXII:167767-168229 1.0000 100 chrXVI:519967-520520 1.0000 100 chrXII:780535-781863 1.0000 100 chrXIV:783515-784316 1.0000 100 chrX:538038-538138 1.0000 100 chrXII:241657-243556 1.0000 100 chrVIII:174455-175996 1.0000 100 chrIX:139492-142576 1.0000 100 chrVII:254124-254760 1.0000 100 chrX:89732-89832 1.0000 100 chrXIII:589968-591617 1.0000 100 chrIV:1362046-1362645 1.0000 100 chrIV:1269888-1271117 1.0000 100 chrVII:647682-648485 1.0000 100 chrII:415583-415868 1.0000 100 chrX:353986-354086 1.0000 100 chrXV:925098-925496 1.0000 100 chrII:45033-45350 1.0000 100 chrXII:656834-657216 1.0000 100 chrIV:758453-759632 1.0000 100 chrXIII:732030-733393 1.0000 100 chrVIII:16490-18242 1.0000 100 chrXVI:699702-700679 1.0000 100 chrIV:382614-384805 1.0000 100 chrXI:162266-162737 1.0000 100 chrIII:179026-179298 1.0000 100 chrVI:224322-226007 1.0000 100 chrII:407493-410490 1.0000 100 chrXIV:96000-96559 1.0000 100 chrIV:1359434-1361339 1.0000 100 chrXII:252958-255145 1.0000 100 chrXV:908431-911589 1.0000 100 chrVIII:466804-467249 1.0000 100 chrV:310697-312301 1.0000 100 chrVI:53168-56026 1.0000 100 chrIV:434026-434859 1.0000 100 chrXIV:172646-174736 1.0000 100 chrXIV:301334-302327 1.0000 100 chrXI:164936-165471 1.0000 100 chrXIV:661944-662518 1.0000 100 chrVII:989815-990307 1.0000 100 chrXIV:374573-375118 1.0000 100 chrIV:520731-521168 1.0000 100 chrVIII:475485-475981 1.0000 100 chrIV:1236447-1238745 1.0000 100 chrXVI:303051-304356 1.0000 100 chrXIII:914916-915311 1.0000 100 chrXVI:188660-188936 1.0000 100 chrI:180929-181496 1.0000 100 chrVII:514933-519014 1.0000 100 chrXV:252847-254744 1.0000 100 chrIX:254249-254547 1.0000 100 chrVI:162024-162389 1.0000 100 chrXVI:559926-560275 1.0000 100 chrXV:216284-216725 1.0000 100 chrXIV:241418-241755 1.0000 100 chrVII:226819-227044 1.0000 100 chrIX:325737-326209 1.0000 100 chrXII:506542-507506 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.299 C 0.201 G 0.201 T 0.299 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--TEC1/background): A 0.305 C 0.195 G 0.195 T 0.305 ******************************************************************************** ******************************************************************************** MOTIF BSGGRWTCGAACCSVGGAYCT MEME-1 width = 21 sites = 80 llr = 1283 E-value = 2.0e-220 ******************************************************************************** -------------------------------------------------------------------------------- Motif BSGGRWTCGAACCSVGGAYCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :13:54:::aa:113:26:1: pos.-specific C 54:::2:8:::a7632:1662 probability G 367a52::a::::34581122 matrix T 3:1:12a2::::31:2:2326 bits 2.4 * * 2.1 * * * 1.9 * * * 1.7 * * **** Relative 1.4 * ****** * Entropy 1.2 * ****** * (23.1 bits) 0.9 *** ******* * 0.7 ***** ******** * ** 0.5 ***** *********** *** 0.2 ***** *************** 0.0 --------------------- Multilevel CGGGAATCGAACCCGGGACCT consensus GCA GT T TGCCATTGC sequence T AT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRWTCGAACCSVGGAYCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:631547-632138 + 63 6.39e-13 GGGGGCGAGC CGGGACTCGAACCCGGGACCT CCCGCACCCT chrVIII:475485-475981 + 32 4.99e-11 ATGTTCCAAC CGAGGATCGAACTCGGGACCT TTGCCGTGTG chrXVI:860135-860716 - 45 1.87e-10 CTGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrVII:845377-846069 - 17 1.87e-10 TTGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrXV:226414-226898 + 14 1.87e-10 TTGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrVI:180695-181232 + 70 1.87e-10 CTGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrX:396560-396660 + 31 1.87e-10 ATGCGCAAGC CCGGAATCGAACCGGGGGCCC AACGATGGCA chrXII:214676-215056 + 76 2.20e-10 ATGGACGCAA CCGGAATCGAACCGATGACCT CTTC chrV:435612-436002 + 4 5.04e-10 GTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrIV:1201566-1202014 - 53 5.04e-10 TAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrIII:151006-151662 + 9 5.04e-10 GCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrIX:300031-300508 + 18 5.04e-10 TAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrX:414783-414883 - 70 5.04e-10 TAGCCCTGTA GGGGGCTCGAACCCCTAACCT TATGATTAAG chrXIV:96000-96559 + 21 6.88e-10 TTGAGCGGTA CGAGAATCGAACCCGTGTCCC CACCTTGGAA chrVII:779394-779927 - 48 6.88e-10 TTGAGCGGTA CGAGAATCGAACCCGTGTCCC CACCTTGGAA chrV:443014-443373 + 68 8.01e-10 ATGGTCTCTA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrXIV:569625-570155 + 36 8.01e-10 ATGGTCTCTA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrX:197175-197275 + 68 8.01e-10 TTGGACGAGT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrXII:1051937-1052204 + 60 8.01e-10 ATGGTCTCTA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrVII:774150-774700 - 17 8.01e-10 TTGGACGAGT CCGGAATCGAACCGGAGACCT CTCCCATGCT chrII:197174-197865 - 69 8.01e-10 ATGGTCTCTA GCGGGATCGAACCGCTGATCC CCGCGTTATT chrXI:140662-141422 + 35 9.27e-10 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrII:326564-327070 + 34 9.27e-10 TTGATCCAAC CGAGGTTCGAACTCGGGATCT TCGCCGTGTA chrV:354685-355307 - 30 9.27e-10 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrV:487083-487608 + 45 9.27e-10 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrII:644960-645425 - 67 9.27e-10 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrIV:488452-489186 + 37 9.27e-10 CTGATCCAAC CGAGGTTCGAACTCGGGATCT TCGCCGTGTA chrXVI:209999-210469 + 17 9.27e-10 ACTCCGATAC GGGGAGTCGAACCCCGGTCTC CACGGTGAAA chrXV:663516-664079 + 74 1.24e-09 ATGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCG chrXIII:420257-420884 + 77 1.24e-09 ATGATTTCGC CCAGGATCGAACTGGGGACGT TCT chrV:438524-438998 - 33 1.24e-09 TTGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrXI:307933-308423 + 25 1.24e-09 TTGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrX:378235-378335 - 71 1.24e-09 TGATTTCGC CCAGGATCGAACTGGGGACGT TCTGCGTGTT chrV:130840-131440 + 1 2.17e-09 . CCGGATTCGAACCGGGGTTGT TCGGATCAAA chrVII:115339-115735 - 67 2.17e-09 ACTCCTCATA GGGGGCTCGAACCCCTGACAT TTCGGTATCC chrIV:802568-803007 + 3 2.17e-09 AC CCGGATTCGAACCGGGGTTGT CCGGATCAAA chrIII:168116-168574 + 15 2.17e-09 AAGGTCCTAC CCGGATTCGAACCGGGGTTGT CCGGATCAAA chrXVI:768997-769509 + 13 2.17e-09 ACTCCTCATA GGGGGCTCGAACCCCTGACAT TTCGGTATCC chrXV:464279-464831 - 17 3.23e-09 AGGGGCGAGC TGGGAATTGAACCCAGGGCCT CTCGCATGCT chrVII:700223-701216 - 58 8.62e-09 TTGATACCCG CGGGGTTTGAACCCGCGCCTC CGAAGAGATC chrXI:162266-162737 + 45 9.69e-09 ACACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrX:374175-374275 + 41 9.69e-09 GCACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrXIII:131653-132090 + 13 9.69e-09 GCACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrXIII:747711-748145 + 23 9.69e-09 ACACTCACGA TGGGGGTCGAACCCATAATCT TCTGATTAGA chrXIII:808031-808550 + 15 1.08e-08 AAGGTCCCAC CCGGATTCGAACTGGGGTTGT TCGGATCAGA chrIV:884271-884748 - 5 1.08e-08 GTGCTCGAGG TGGGGTTTGAACCCACGACGG TCGC chrIV:1095132-1095657 + 35 3.85e-08 ATGCGAACTC TGTGGATCGAACACAGGACCT CCAGATATCT chrXIII:463351-463871 - 35 3.85e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrX:204542-204642 - 27 3.85e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrVII:544322-544921 + 15 3.85e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrIV:568701-569320 - 46 3.85e-08 TCTCCGTGAC GGGGAATTGAACCCCGATCTG GCACGCGACA chrVIII:358281-358755 + 19 3.85e-08 ATGCGAATTC TGTGGATCGAACACAGGACCT CCAGATAACT chrVII:440481-441027 + 21 3.85e-08 ATGCGAATTC TGTGGATCGAACACAGGACCT CCAGATAACT chrXVI:622270-622877 + 26 3.85e-08 ATGCGAATTC TGTGGATCGAACACAGGACCT CCAGATAACT chrIX:336056-336612 + 74 3.85e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTG GCACGC chrXI:513017-513608 + 79 3.85e-08 TCTCCGCGAC GGGGAATTGAACCCCGATCTG G chrII:266202-266685 - 28 4.24e-08 ATGCTTCCAA TCGGATTTGAACCGATGATCT CCACATTACT chrX:422726-422826 - 60 6.20e-08 GTGCTCCAGG GGAGGTTCGAACTCTCGACCT TCAGATTATG chrVIII:466804-467249 - 56 7.45e-08 ATGCCACCTG CCAGAATTGAACTAGCGACCT TTGCATTACA chrXV:228087-228645 - 59 7.45e-08 ACGACCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAAC chrIII:127577-127915 - 64 7.45e-08 ACGACCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAAC chrVII:730966-731435 - 31 7.45e-08 ACGACCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAAC chrXI:74408-74994 - 17 7.45e-08 GCGACCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAAC chrXIV:632402-632890 - 47 7.45e-08 ACGACCCCAG TGAGGGTTGAACTCACGATCT TGCGATTAAC chrXVI:435641-436172 + 46 3.04e-07 AAGCTCGCAC TCAGGATCGAACTAAGGACCA ACAGATTTGC chrXI:490773-491215 - 67 3.04e-07 TCTTCCCCGC CAGGACTTGAACCTGGAATCT TCTGGTTCGT chrXIV:725931-726392 + 32 4.39e-07 CTGAAGGATG CGAGGTTCGAACTCGCGCGGA CAACCGTCCA chrII:9357-9941 - 38 4.39e-07 CTGAAGGATG CGAGGTTCGAACTCGCGCGGA CAACCGTCCA chrIV:946118-946630 - 47 5.43e-07 ATCTCCCGGG GGCGAGTCGAACGCCCGATCT CAAGATTTCG chrXII:167767-168229 + 5 6.23e-07 ACTG CAGGACTCGAACCTGCGCGGG CAAAGCCCAA chrIV:437560-438115 - 37 6.23e-07 ACGACAACTG CAGGACTCGAACCTGCGCGGG CAAAGCCCAA chrIV:1305251-1306192 - 12 6.23e-07 ACGACAACTG CAGGACTCGAACCTGCGCGGG CCAAAGCCCA chrVII:483244-483775 - 26 1.19e-06 GAAAACAAAC CCGGTCTCGAAGCGGAGATCC GGCGATAATT chrXVI:303051-304356 - 10 1.26e-06 GTCAATTTCT TCGGTTTCGAAGTCCCAACCT GGGAATCTG chrX:517651-517751 + 5 1.34e-06 CCGC TCGGTTTCGATCCGAGGACAT CAGGGTTATG chrIII:149720-150218 - 43 1.34e-06 ATAGCGCCGC TCGGTTTCGATCCGAGGACAT CAGGGTTATG chrXIII:362942-363297 - 37 1.42e-06 ATGCCATCTC CTAGAATCGAACCAGGGTTTC ATCGGCCACA chrV:288129-288731 + 72 1.70e-06 ACGACACCAG CAGGATTTGAACCAGCGCGGG CAGAGCCC chrIII:227755-228288 - 42 1.70e-06 ACGACACCAG CAGGATTTGAACCAGCGCGGG CAGAGCCCAA chrXV:274472-275002 - 57 2.51e-06 GCGTCACAGA CAGGATTCGAACCTGCGCAGG TAAAACCCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRWTCGAACCSVGGAYCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631547-632138 6.4e-13 62_[+1]_17 chrVIII:475485-475981 5e-11 31_[+1]_48 chrXVI:860135-860716 1.9e-10 44_[-1]_35 chrVII:845377-846069 1.9e-10 16_[-1]_63 chrXV:226414-226898 1.9e-10 13_[+1]_66 chrVI:180695-181232 1.9e-10 69_[+1]_10 chrX:396560-396660 1.9e-10 30_[+1]_49 chrXII:214676-215056 2.2e-10 75_[+1]_4 chrV:435612-436002 5e-10 3_[+1]_76 chrIV:1201566-1202014 5e-10 52_[-1]_27 chrIII:151006-151662 5e-10 8_[+1]_71 chrIX:300031-300508 5e-10 17_[+1]_62 chrX:414783-414883 5e-10 69_[-1]_10 chrXIV:96000-96559 6.9e-10 20_[+1]_59 chrVII:779394-779927 6.9e-10 47_[-1]_32 chrV:443014-443373 8e-10 67_[+1]_12 chrXIV:569625-570155 8e-10 35_[+1]_44 chrX:197175-197275 8e-10 67_[+1]_12 chrXII:1051937-1052204 8e-10 59_[+1]_20 chrVII:774150-774700 8e-10 16_[-1]_63 chrII:197174-197865 8e-10 68_[-1]_11 chrXI:140662-141422 9.3e-10 34_[+1]_45 chrII:326564-327070 9.3e-10 33_[+1]_46 chrV:354685-355307 9.3e-10 29_[-1]_50 chrV:487083-487608 9.3e-10 44_[+1]_35 chrII:644960-645425 9.3e-10 66_[-1]_13 chrIV:488452-489186 9.3e-10 36_[+1]_43 chrXVI:209999-210469 9.3e-10 16_[+1]_63 chrXV:663516-664079 1.2e-09 73_[+1]_6 chrXIII:420257-420884 1.2e-09 76_[+1]_3 chrV:438524-438998 1.2e-09 32_[-1]_47 chrXI:307933-308423 1.2e-09 24_[+1]_55 chrX:378235-378335 1.2e-09 70_[-1]_9 chrV:130840-131440 2.2e-09 [+1]_79 chrVII:115339-115735 2.2e-09 66_[-1]_13 chrIV:802568-803007 2.2e-09 2_[+1]_77 chrIII:168116-168574 2.2e-09 14_[+1]_65 chrXVI:768997-769509 2.2e-09 12_[+1]_67 chrXV:464279-464831 3.2e-09 16_[-1]_63 chrVII:700223-701216 8.6e-09 57_[-1]_22 chrXI:162266-162737 9.7e-09 44_[+1]_35 chrX:374175-374275 9.7e-09 40_[+1]_39 chrXIII:131653-132090 9.7e-09 12_[+1]_67 chrXIII:747711-748145 9.7e-09 22_[+1]_57 chrXIII:808031-808550 1.1e-08 14_[+1]_65 chrIV:884271-884748 1.1e-08 4_[-1]_75 chrIV:1095132-1095657 3.9e-08 34_[+1]_45 chrXIII:463351-463871 3.9e-08 34_[-1]_45 chrX:204542-204642 3.9e-08 26_[-1]_53 chrVII:544322-544921 3.9e-08 14_[+1]_65 chrIV:568701-569320 3.9e-08 45_[-1]_34 chrVIII:358281-358755 3.9e-08 18_[+1]_61 chrVII:440481-441027 3.9e-08 20_[+1]_59 chrXVI:622270-622877 3.9e-08 25_[+1]_54 chrIX:336056-336612 3.9e-08 73_[+1]_6 chrXI:513017-513608 3.9e-08 78_[+1]_1 chrII:266202-266685 4.2e-08 27_[-1]_52 chrX:422726-422826 6.2e-08 59_[-1]_20 chrVIII:466804-467249 7.5e-08 55_[-1]_24 chrXV:228087-228645 7.5e-08 58_[-1]_21 chrIII:127577-127915 7.5e-08 63_[-1]_16 chrVII:730966-731435 7.5e-08 30_[-1]_49 chrXI:74408-74994 7.5e-08 16_[-1]_63 chrXIV:632402-632890 7.5e-08 46_[-1]_33 chrXVI:435641-436172 3e-07 45_[+1]_34 chrXI:490773-491215 3e-07 66_[-1]_13 chrXIV:725931-726392 4.4e-07 31_[+1]_48 chrII:9357-9941 4.4e-07 37_[-1]_42 chrIV:946118-946630 5.4e-07 46_[-1]_33 chrXII:167767-168229 6.2e-07 4_[+1]_75 chrIV:437560-438115 6.2e-07 36_[-1]_43 chrIV:1305251-1306192 6.2e-07 11_[-1]_68 chrVII:483244-483775 1.2e-06 25_[-1]_54 chrXVI:303051-304356 1.3e-06 9_[-1]_70 chrX:517651-517751 1.3e-06 4_[+1]_75 chrIII:149720-150218 1.3e-06 42_[-1]_37 chrXIII:362942-363297 1.4e-06 36_[-1]_43 chrV:288129-288731 1.7e-06 71_[+1]_8 chrIII:227755-228288 1.7e-06 41_[-1]_38 chrXV:274472-275002 2.5e-06 56_[-1]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRWTCGAACCSVGGAYCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BSGGRWTCGAACCSVGGAYCT width=21 seqs=80 chrXIV:631547-632138 ( 63) CGGGACTCGAACCCGGGACCT 1 chrVIII:475485-475981 ( 32) CGAGGATCGAACTCGGGACCT 1 chrXVI:860135-860716 ( 45) CCGGAATCGAACCGGGGGCCC 1 chrVII:845377-846069 ( 17) CCGGAATCGAACCGGGGGCCC 1 chrXV:226414-226898 ( 14) CCGGAATCGAACCGGGGGCCC 1 chrVI:180695-181232 ( 70) CCGGAATCGAACCGGGGGCCC 1 chrX:396560-396660 ( 31) CCGGAATCGAACCGGGGGCCC 1 chrXII:214676-215056 ( 76) CCGGAATCGAACCGATGACCT 1 chrV:435612-436002 ( 4) GGGGGCTCGAACCCCTAACCT 1 chrIV:1201566-1202014 ( 53) GGGGGCTCGAACCCCTAACCT 1 chrIII:151006-151662 ( 9) GGGGGCTCGAACCCCTAACCT 1 chrIX:300031-300508 ( 18) GGGGGCTCGAACCCCTAACCT 1 chrX:414783-414883 ( 70) GGGGGCTCGAACCCCTAACCT 1 chrXIV:96000-96559 ( 21) CGAGAATCGAACCCGTGTCCC 1 chrVII:779394-779927 ( 48) CGAGAATCGAACCCGTGTCCC 1 chrV:443014-443373 ( 68) GCGGGATCGAACCGCTGATCC 1 chrXIV:569625-570155 ( 36) GCGGGATCGAACCGCTGATCC 1 chrX:197175-197275 ( 68) CCGGAATCGAACCGGAGACCT 1 chrXII:1051937-1052204 ( 60) GCGGGATCGAACCGCTGATCC 1 chrVII:774150-774700 ( 17) CCGGAATCGAACCGGAGACCT 1 chrII:197174-197865 ( 69) GCGGGATCGAACCGCTGATCC 1 chrXI:140662-141422 ( 35) GGGGAGTCGAACCCCGGTCTC 1 chrII:326564-327070 ( 34) CGAGGTTCGAACTCGGGATCT 1 chrV:354685-355307 ( 30) GGGGAGTCGAACCCCGGTCTC 1 chrV:487083-487608 ( 45) GGGGAGTCGAACCCCGGTCTC 1 chrII:644960-645425 ( 67) GGGGAGTCGAACCCCGGTCTC 1 chrIV:488452-489186 ( 37) CGAGGTTCGAACTCGGGATCT 1 chrXVI:209999-210469 ( 17) GGGGAGTCGAACCCCGGTCTC 1 chrXV:663516-664079 ( 74) CCAGGATCGAACTGGGGACGT 1 chrXIII:420257-420884 ( 77) CCAGGATCGAACTGGGGACGT 1 chrV:438524-438998 ( 33) CCAGGATCGAACTGGGGACGT 1 chrXI:307933-308423 ( 25) CCAGGATCGAACTGGGGACGT 1 chrX:378235-378335 ( 71) CCAGGATCGAACTGGGGACGT 1 chrV:130840-131440 ( 1) CCGGATTCGAACCGGGGTTGT 1 chrVII:115339-115735 ( 67) GGGGGCTCGAACCCCTGACAT 1 chrIV:802568-803007 ( 3) CCGGATTCGAACCGGGGTTGT 1 chrIII:168116-168574 ( 15) CCGGATTCGAACCGGGGTTGT 1 chrXVI:768997-769509 ( 13) GGGGGCTCGAACCCCTGACAT 1 chrXV:464279-464831 ( 17) TGGGAATTGAACCCAGGGCCT 1 chrVII:700223-701216 ( 58) CGGGGTTTGAACCCGCGCCTC 1 chrXI:162266-162737 ( 45) TGGGGGTCGAACCCATAATCT 1 chrX:374175-374275 ( 41) TGGGGGTCGAACCCATAATCT 1 chrXIII:131653-132090 ( 13) TGGGGGTCGAACCCATAATCT 1 chrXIII:747711-748145 ( 23) TGGGGGTCGAACCCATAATCT 1 chrXIII:808031-808550 ( 15) CCGGATTCGAACTGGGGTTGT 1 chrIV:884271-884748 ( 5) TGGGGTTTGAACCCACGACGG 1 chrIV:1095132-1095657 ( 35) TGTGGATCGAACACAGGACCT 1 chrXIII:463351-463871 ( 35) GGGGAATTGAACCCCGATCTG 1 chrX:204542-204642 ( 27) GGGGAATTGAACCCCGATCTG 1 chrVII:544322-544921 ( 15) GGGGAATTGAACCCCGATCTG 1 chrIV:568701-569320 ( 46) GGGGAATTGAACCCCGATCTG 1 chrVIII:358281-358755 ( 19) TGTGGATCGAACACAGGACCT 1 chrVII:440481-441027 ( 21) TGTGGATCGAACACAGGACCT 1 chrXVI:622270-622877 ( 26) TGTGGATCGAACACAGGACCT 1 chrIX:336056-336612 ( 74) GGGGAATTGAACCCCGATCTG 1 chrXI:513017-513608 ( 79) GGGGAATTGAACCCCGATCTG 1 chrII:266202-266685 ( 28) TCGGATTTGAACCGATGATCT 1 chrX:422726-422826 ( 60) GGAGGTTCGAACTCTCGACCT 1 chrVIII:466804-467249 ( 56) CCAGAATTGAACTAGCGACCT 1 chrXV:228087-228645 ( 59) TGAGGGTTGAACTCACGATCT 1 chrIII:127577-127915 ( 64) TGAGGGTTGAACTCACGATCT 1 chrVII:730966-731435 ( 31) TGAGGGTTGAACTCACGATCT 1 chrXI:74408-74994 ( 17) TGAGGGTTGAACTCACGATCT 1 chrXIV:632402-632890 ( 47) TGAGGGTTGAACTCACGATCT 1 chrXVI:435641-436172 ( 46) TCAGGATCGAACTAAGGACCA 1 chrXI:490773-491215 ( 67) CAGGACTTGAACCTGGAATCT 1 chrXIV:725931-726392 ( 32) CGAGGTTCGAACTCGCGCGGA 1 chrII:9357-9941 ( 38) CGAGGTTCGAACTCGCGCGGA 1 chrIV:946118-946630 ( 47) GGCGAGTCGAACGCCCGATCT 1 chrXII:167767-168229 ( 5) CAGGACTCGAACCTGCGCGGG 1 chrIV:437560-438115 ( 37) CAGGACTCGAACCTGCGCGGG 1 chrIV:1305251-1306192 ( 12) CAGGACTCGAACCTGCGCGGG 1 chrVII:483244-483775 ( 26) CCGGTCTCGAAGCGGAGATCC 1 chrXVI:303051-304356 ( 10) TCGGTTTCGAAGTCCCAACCT 1 chrX:517651-517751 ( 5) TCGGTTTCGATCCGAGGACAT 1 chrIII:149720-150218 ( 43) TCGGTTTCGATCCGAGGACAT 1 chrXIII:362942-363297 ( 37) CTAGAATCGAACCAGGGTTTC 1 chrV:288129-288731 ( 72) CAGGATTTGAACCAGCGCGGG 1 chrIII:227755-228288 ( 42) CAGGATTTGAACCAGCGCGGG 1 chrXV:274472-275002 ( 57) CAGGATTCGAACCTGCGCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRWTCGAACCSVGGAYCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 8.65966 E= 2.0e-220 -1297 121 63 -29 -180 85 150 -461 -22 -396 179 -261 -1297 -1297 236 -1297 64 -1297 129 -261 48 -26 -5 -44 -1297 -1297 -1297 171 -1297 197 -1297 -36 -1297 -1297 236 -1297 171 -1297 -1297 -1297 167 -1297 -1297 -361 -1297 233 -296 -1297 -261 182 -396 -29 -229 153 68 -229 -29 63 117 -461 -302 29 133 -36 -52 -1297 202 -1297 94 -79 -137 -44 -461 163 -115 -3 -261 153 21 -91 -302 29 -26 88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRWTCGAACCSVGGAYCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 80 E= 2.0e-220 0.000000 0.450000 0.300000 0.250000 0.087500 0.350000 0.550000 0.012500 0.262500 0.012500 0.675000 0.050000 0.000000 0.000000 1.000000 0.000000 0.475000 0.000000 0.475000 0.050000 0.425000 0.162500 0.187500 0.225000 0.000000 0.000000 0.000000 1.000000 0.000000 0.762500 0.000000 0.237500 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.975000 0.000000 0.000000 0.025000 0.000000 0.975000 0.025000 0.000000 0.050000 0.687500 0.012500 0.250000 0.062500 0.562500 0.312500 0.062500 0.250000 0.300000 0.437500 0.012500 0.037500 0.237500 0.487500 0.237500 0.212500 0.000000 0.787500 0.000000 0.587500 0.112500 0.075000 0.225000 0.012500 0.600000 0.087500 0.300000 0.050000 0.562500 0.225000 0.162500 0.037500 0.237500 0.162500 0.562500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSGGRWTCGAACCSVGGAYCT MEME-1 regular expression -------------------------------------------------------------------------------- [CGT][GC][GA]G[AG][AT]T[CT]GAAC[CT][CG][GCA][GCT][GA][AT][CT][CG][TC] -------------------------------------------------------------------------------- Time 353.56 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCCVAGTGGKTTAAGGCGYCAGAYT MEME-2 width = 26 sites = 21 llr = 510 E-value = 2.3e-082 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCCVAGTGGKTTAAGGCGYCAGAYT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::238:::::::a9:1:2:25:6:: pos.-specific C :2882:::1::21::::a:371126: probability G a8::328:6a4::::a9:811281:: matrix T ::2:1:2a2:689:1::::5:21:4a bits 2.4 * * * * 2.1 * * * * 1.9 * * *** 1.7 ** * * * * *** Relative 1.4 **** ** * ** **** * * Entropy 1.2 **** *** * ******** * ** (35.0 bits) 0.9 **** ************** * * ** 0.7 **** **************** **** 0.5 **** **************** **** 0.2 ********************* **** 0.0 -------------------------- Multilevel GGCCAAGTGGTTTAAGGCGTCAGACT consensus T G T GC AC CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCVAGTGGKTTAAGGCGYCAGAYT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------- chrX:617711-617811 + 45 9.38e-16 ATGGGAGTTT GGCCGAGTGGTTTAAGGCGTCAGATT TAGGTGGATT chrXII:592339-592827 - 53 9.38e-16 ATGGGAGTTT GGCCGAGTGGTTTAAGGCGTCAGATT TAGGTGGATT chrXII:962809-963304 - 16 5.04e-15 ACGGAGGGTT GGCCGAGTGGTCTAAGGCGGCAGACT TAAGATCTGT chrX:424273-424373 - 41 5.04e-15 ATGGAGGGTT GGCCGAGTGGTCTAAGGCGGCAGACT TAAGATCTGT chrXIV:725931-726392 - 73 5.04e-15 TT GGCCGAGTGGTCTAAGGCGGCAGACT TAAGATCTGT chrXV:228087-228645 + 23 4.22e-13 TAGACTCCAT GGCCAAGTTGGTTAAGGCGTGCGACT GTTAATCGCA chrIII:127577-127915 + 28 4.22e-13 ATGACTCCAT GGCCAAGTTGGTTAAGGCGTGCGACT GTTAATCGCA chrXIV:632402-632890 + 11 4.22e-13 GTGACTCCAT GGCCAAGTTGGTTAAGGCGTGCGACT GTTAATCGCA chrXII:628097-628641 + 72 1.08e-12 GTGGTTGTTT GGCCGAGCGGTCTAAGGCGCCTGATT CAA chrVII:700223-701216 + 14 1.21e-12 TTGGTACTCT GGCCGAGTGGTCTAAGGCGTCAGGTC GAGGTCCTGA chrXIV:569625-570155 - 67 1.69e-11 GGTCTCTT GGCCCAGTTGGTTAAGGCACCGTGCT AATAACGCGG chrII:197174-197865 + 33 1.69e-11 AAGGTCTCTT GGCCCAGTTGGTTAAGGCACCGTGCT AATAACGCGG chrX:353986-354086 + 71 3.88e-11 ACTCTCGGTA GCCAAGTTGGTTTAAGGCGCAAGACT GTAA chrX:542796-542896 - 30 3.88e-11 ACTCTCGGTA GCCAAGTTGGTTTAAGGCGCAAGACT GTAATTTATC chrVI:167196-167700 + 48 3.88e-11 ACTCTCGGTA GCCAAGTTGGTTTAAGGCGCAAGACT GTAATTTACC chrVI:210431-210987 - 14 3.88e-11 ACTCTCGGTA GCCAAGTTGGTTTAAGGCGCAAGACT GTAATTTACC chrXI:307933-308423 - 56 9.80e-11 GTGGTTTCGT GGTCTAGTCGGTTATGGCATCTGCTT AACACGCAGA chrV:469215-469709 + 53 9.80e-11 TTGGTTTCGT GGTCTAGTCGGTTATGGCATCTGCTT AACACGCAGA chrX:378235-378335 + 35 9.80e-11 TAGGTTTCGT GGTCTAGTCGGTTATGGCATCTGCTT AACACGCAGA chrII:326564-327070 - 65 1.32e-10 CGGGTCCAAT GGTCCAGTGGTTCAAGACGTCGCCTT TACACGGCGA chrIV:488452-489186 - 68 1.32e-10 GTCCAAT GGTCCAGTGGTTCAAGACGTCGCCTT TACACGGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCVAGTGGKTTAAGGCGYCAGAYT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:617711-617811 9.4e-16 44_[+2]_30 chrXII:592339-592827 9.4e-16 52_[-2]_22 chrXII:962809-963304 5e-15 15_[-2]_59 chrX:424273-424373 5e-15 40_[-2]_34 chrXIV:725931-726392 5e-15 72_[-2]_2 chrXV:228087-228645 4.2e-13 22_[+2]_52 chrIII:127577-127915 4.2e-13 27_[+2]_47 chrXIV:632402-632890 4.2e-13 10_[+2]_64 chrXII:628097-628641 1.1e-12 71_[+2]_3 chrVII:700223-701216 1.2e-12 13_[+2]_61 chrXIV:569625-570155 1.7e-11 66_[-2]_8 chrII:197174-197865 1.7e-11 32_[+2]_42 chrX:353986-354086 3.9e-11 70_[+2]_4 chrX:542796-542896 3.9e-11 29_[-2]_45 chrVI:167196-167700 3.9e-11 47_[+2]_27 chrVI:210431-210987 3.9e-11 13_[-2]_61 chrXI:307933-308423 9.8e-11 55_[-2]_19 chrV:469215-469709 9.8e-11 52_[+2]_22 chrX:378235-378335 9.8e-11 34_[+2]_40 chrII:326564-327070 1.3e-10 64_[-2]_10 chrIV:488452-489186 1.3e-10 67_[-2]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCVAGTGGKTTAAGGCGYCAGAYT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCCVAGTGGKTTAAGGCGYCAGAYT width=26 seqs=21 chrX:617711-617811 ( 45) GGCCGAGTGGTTTAAGGCGTCAGATT 1 chrXII:592339-592827 ( 53) GGCCGAGTGGTTTAAGGCGTCAGATT 1 chrXII:962809-963304 ( 16) GGCCGAGTGGTCTAAGGCGGCAGACT 1 chrX:424273-424373 ( 41) GGCCGAGTGGTCTAAGGCGGCAGACT 1 chrXIV:725931-726392 ( 73) GGCCGAGTGGTCTAAGGCGGCAGACT 1 chrXV:228087-228645 ( 23) GGCCAAGTTGGTTAAGGCGTGCGACT 1 chrIII:127577-127915 ( 28) GGCCAAGTTGGTTAAGGCGTGCGACT 1 chrXIV:632402-632890 ( 11) GGCCAAGTTGGTTAAGGCGTGCGACT 1 chrXII:628097-628641 ( 72) GGCCGAGCGGTCTAAGGCGCCTGATT 1 chrVII:700223-701216 ( 14) GGCCGAGTGGTCTAAGGCGTCAGGTC 1 chrXIV:569625-570155 ( 67) GGCCCAGTTGGTTAAGGCACCGTGCT 1 chrII:197174-197865 ( 33) GGCCCAGTTGGTTAAGGCACCGTGCT 1 chrX:353986-354086 ( 71) GCCAAGTTGGTTTAAGGCGCAAGACT 1 chrX:542796-542896 ( 30) GCCAAGTTGGTTTAAGGCGCAAGACT 1 chrVI:167196-167700 ( 48) GCCAAGTTGGTTTAAGGCGCAAGACT 1 chrVI:210431-210987 ( 14) GCCAAGTTGGTTTAAGGCGCAAGACT 1 chrXI:307933-308423 ( 56) GGTCTAGTCGGTTATGGCATCTGCTT 1 chrV:469215-469709 ( 53) GGTCTAGTCGGTTATGGCATCTGCTT 1 chrX:378235-378335 ( 35) GGTCTAGTCGGTTATGGCATCTGCTT 1 chrII:326564-327070 ( 65) GGTCCAGTGGTTCAAGACGTCGCCTT 1 chrIV:488452-489186 ( 68) GGTCCAGTGGTTCAAGACGTCGCCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCVAGTGGKTTAAGGCGYCAGAYT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 26 n= 45000 bayes= 11.3696 E= 2.3e-082 -1104 -1104 236 -1104 -1104 -3 206 -1104 -1104 197 -1104 -36 -68 206 -1104 -1104 13 -3 78 -110 141 -1104 -3 -1104 -1104 -1104 206 -68 -1104 -203 -1104 164 -1104 -44 167 -36 -1104 -1104 236 -1104 -1104 -1104 97 102 -1104 29 -1104 132 -1104 -103 -1104 157 171 -1104 -1104 -1104 149 -1104 -1104 -110 -1104 -1104 236 -1104 -168 -1104 222 -1104 -1104 236 -1104 -1104 -36 -1104 197 -1104 -1104 78 -44 78 -68 178 -44 -1104 64 -44 -3 -68 -1104 -103 206 -168 102 29 -44 -1104 -1104 155 -1104 49 -1104 -203 -1104 164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCVAGTGGKTTAAGGCGYCAGAYT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 26 nsites= 21 E= 2.3e-082 0.000000 0.000000 1.000000 0.000000 0.000000 0.190476 0.809524 0.000000 0.000000 0.761905 0.000000 0.238095 0.190476 0.809524 0.000000 0.000000 0.333333 0.190476 0.333333 0.142857 0.809524 0.000000 0.190476 0.000000 0.000000 0.000000 0.809524 0.190476 0.000000 0.047619 0.000000 0.952381 0.000000 0.142857 0.619048 0.238095 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.380952 0.619048 0.000000 0.238095 0.000000 0.761905 0.000000 0.095238 0.000000 0.904762 1.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 0.095238 0.000000 0.904762 0.000000 0.000000 1.000000 0.000000 0.000000 0.238095 0.000000 0.761905 0.000000 0.000000 0.333333 0.142857 0.523810 0.190476 0.666667 0.142857 0.000000 0.476190 0.142857 0.190476 0.190476 0.000000 0.095238 0.809524 0.095238 0.619048 0.238095 0.142857 0.000000 0.000000 0.571429 0.000000 0.428571 0.000000 0.047619 0.000000 0.952381 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCVAGTGGKTTAAGGCGYCAGAYT MEME-2 regular expression -------------------------------------------------------------------------------- GG[CT]C[AG]AGT[GT]G[TG][TC]TAAGGC[GA][TC]CAG[AC][CT]T -------------------------------------------------------------------------------- Time 844.84 secs. ******************************************************************************** ******************************************************************************** MOTIF KDTAGYGYARTGGKTAKMRCGTHHS MEME-3 width = 25 sites = 35 llr = 576 E-value = 1.9e-058 ******************************************************************************** -------------------------------------------------------------------------------- Motif KDTAGYGYARTGGKTAKMRCGTHHS MEME-3 Description -------------------------------------------------------------------------------- Simplified A 14:7::::a5:1::29:35:1:23: pos.-specific C 1::::414::12:12:16:711444 probability G 43:3a:6::5:6a3::614:51116 matrix T 43a::636::81:5713:132733: bits 2.4 * 2.1 * * 1.9 * * 1.7 * * * * Relative 1.4 * * * * * Entropy 1.2 * * ** * * * * (23.7 bits) 0.9 **** **** * ** * * 0.7 *********** ***** * * 0.5 ******************** * 0.2 ************************* 0.0 ------------------------- Multilevel GATAGTGTAGTGGTTAGCACGTCCG consensus TT G CTC A C G TAGT TAC sequence G AT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KDTAGYGYARTGGKTAKMRCGTHHS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------- chrXIII:808031-808550 - 48 8.46e-11 AAAAAGGTCC TATAGTGTAGTGGTTATCACTTTCG GTTCTGATCC chrV:130840-131440 - 34 8.46e-11 TAAGAGGTTT TATAGTGTAGTGGTTATCACTTTCG GTTTTGATCC chrIV:802568-803007 - 36 8.46e-11 TTGTCGGTCC TATAGTGTAGTGGTTATCACTTTCG GTTTTGATCC chrIII:168116-168574 - 48 8.46e-11 GTCCTGGTCC TATAGTGTAGTGGTTATCACTTTCG GTTTTGATCC chrII:350611-351066 + 44 8.46e-11 AAAAGGGTTT TATAGTGTAGTGGTTATCACTTTCG GTTTTGATCC chrV:435612-436002 - 38 1.40e-10 TAAGAGCCTT GTTGGCGCAATCGGTAGCGCGTATG ACTCTTAATC chrIV:1201566-1202014 + 15 1.40e-10 AAATAGCCTT GTTGGCGCAATCGGTAGCGCGTATG ACTCTTAATC chrIII:151006-151662 - 43 1.40e-10 AAAGAGCCTT GTTGGCGCAATCGGTAGCGCGTATG ACTCTTAATC chrIX:300031-300508 - 52 1.40e-10 AAATAGCCTT GTTGGCGCAATCGGTAGCGCGTATG ACTCTTAATC chrX:414783-414883 + 32 1.40e-10 AATTAGCCTT GTTGGCGCAATCGGTAGCGCGTATG ACTCTTAATC chrXII:656834-657216 - 2 2.26e-10 AAATTGGGCG TGTGGCGTAGTCGGTAGCGCGCTCC C chrVII:115339-115735 + 6 4.81e-10 TCCTT GTTAGCTCAGTTGGTAGAGCGTTCG GCTTTTAAGC chrXII:875176-875614 + 36 4.81e-10 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCGTTCG GCTTTTAAGC chrXVI:768997-769509 - 70 4.81e-10 ATCCTT GTTAGCTCAGTTGGTAGAGCGTTCG GCTTTTAAGC chrXIV:96000-96559 - 54 3.87e-09 CACATGGGCG GTTAGTGTAGTGGTTATCATCCCAC CCTTCCAAGG chrVII:779394-779927 + 11 3.87e-09 ACCCCGGGCG GTTAGTGTAGTGGTTATCATCCCAC CCTTCCAAGG chrVIII:475485-475981 - 66 7.58e-09 AGTCTGTTCC AATAGTGTAGCGGCTATCACGTTGC CTTCACACGG chrVII:544322-544921 - 48 9.38e-09 TTTCTTCCGT GATAGTTTAATGGTCAGAATGGGCG CTTGTCGCGT chrIV:568701-569320 + 9 9.38e-09 TCTTCCGT GATAGTTTAATGGTCAGAATGGGCG CTTGTCGCGT chrVII:531384-531811 + 68 9.38e-09 TTACTTCCGT GATAGTTTAATGGTCAGAATGGGCG CTTGTCGC chrXV:571743-572144 + 70 9.38e-09 TAAAATCCGT GATAGTTTAATGGTCAGAATGGGCG CTTGTC chrXI:140662-141422 - 68 1.04e-08 TAATCCGA TATAGTGTAACGGCTATCACATCAC GCTTTCACCG chrII:644960-645425 + 30 1.04e-08 TATTATCCGA TATAGTGTAACGGCTATCACATCAC GCTTTCACCG chrXVI:209999-210469 - 50 1.04e-08 TATTGTCCGA TATAGTGTAACGGCTATCACATCAC GCTTTCACCG chrIX:370225-370618 + 51 1.04e-08 TATAATCCGA TATAGTGTAACGGCTATCACATCAC GCTTTCACCG chrX:422726-422826 + 22 3.94e-08 TGTATGCTTC AGTAGCTCAGTAGGAAGAGCGTCAG TCTCATAATC chrIV:1175601-1176063 + 52 3.94e-08 ACAAAGCTTC AGTAGCTCAGTAGGAAGAGCGTCAG TCTCATAATC chrXI:490773-491215 + 29 9.62e-08 TCTTGTTCCT CGTGGCCCAATGGTCACGGCGTCTG GCTACGAACC chrX:233672-233772 + 51 9.62e-08 TCTTGTTCCT CGTGGCCCAATGGTCACGGCGTCTG GCTACGAACC chrXII:92331-92729 + 73 7.96e-07 AATAAGGGCG TGTGGTCTAGTGGTATGATTCTCGC TTT chrVI:101166-101568 + 64 7.96e-07 AATTCGGGCG TGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC chrI:138947-139355 + 56 7.96e-07 AGTACGGGCG TGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC chrVII:794201-795177 + 41 8.37e-07 GTGACTATAG AATAGTGCAAGTGGAAGCGTTTTTC TTCTTTTTCT chrVIII:62540-62935 + 73 1.40e-06 CATATGCCAT CTTAGTATAGTGGTTAGTACACATC GTT chrXIII:145928-147611 - 59 3.34e-06 TCAATTTGTC GGTAGTGAAGTCCATACCGTGGAAG TTGGTCAACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KDTAGYGYARTGGKTAKMRCGTHHS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:808031-808550 8.5e-11 47_[-3]_28 chrV:130840-131440 8.5e-11 33_[-3]_42 chrIV:802568-803007 8.5e-11 35_[-3]_40 chrIII:168116-168574 8.5e-11 47_[-3]_28 chrII:350611-351066 8.5e-11 43_[+3]_32 chrV:435612-436002 1.4e-10 37_[-3]_38 chrIV:1201566-1202014 1.4e-10 14_[+3]_61 chrIII:151006-151662 1.4e-10 42_[-3]_33 chrIX:300031-300508 1.4e-10 51_[-3]_24 chrX:414783-414883 1.4e-10 31_[+3]_44 chrXII:656834-657216 2.3e-10 1_[-3]_74 chrVII:115339-115735 4.8e-10 5_[+3]_70 chrXII:875176-875614 4.8e-10 35_[+3]_40 chrXVI:768997-769509 4.8e-10 69_[-3]_6 chrXIV:96000-96559 3.9e-09 53_[-3]_22 chrVII:779394-779927 3.9e-09 10_[+3]_65 chrVIII:475485-475981 7.6e-09 65_[-3]_10 chrVII:544322-544921 9.4e-09 47_[-3]_28 chrIV:568701-569320 9.4e-09 8_[+3]_67 chrVII:531384-531811 9.4e-09 67_[+3]_8 chrXV:571743-572144 9.4e-09 69_[+3]_6 chrXI:140662-141422 1e-08 67_[-3]_8 chrII:644960-645425 1e-08 29_[+3]_46 chrXVI:209999-210469 1e-08 49_[-3]_26 chrIX:370225-370618 1e-08 50_[+3]_25 chrX:422726-422826 3.9e-08 21_[+3]_54 chrIV:1175601-1176063 3.9e-08 51_[+3]_24 chrXI:490773-491215 9.6e-08 28_[+3]_47 chrX:233672-233772 9.6e-08 50_[+3]_25 chrXII:92331-92729 8e-07 72_[+3]_3 chrVI:101166-101568 8e-07 63_[+3]_12 chrI:138947-139355 8e-07 55_[+3]_20 chrVII:794201-795177 8.4e-07 40_[+3]_35 chrVIII:62540-62935 1.4e-06 72_[+3]_3 chrXIII:145928-147611 3.3e-06 58_[-3]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KDTAGYGYARTGGKTAKMRCGTHHS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KDTAGYGYARTGGKTAKMRCGTHHS width=25 seqs=35 chrXIII:808031-808550 ( 48) TATAGTGTAGTGGTTATCACTTTCG 1 chrV:130840-131440 ( 34) TATAGTGTAGTGGTTATCACTTTCG 1 chrIV:802568-803007 ( 36) TATAGTGTAGTGGTTATCACTTTCG 1 chrIII:168116-168574 ( 48) TATAGTGTAGTGGTTATCACTTTCG 1 chrII:350611-351066 ( 44) TATAGTGTAGTGGTTATCACTTTCG 1 chrV:435612-436002 ( 38) GTTGGCGCAATCGGTAGCGCGTATG 1 chrIV:1201566-1202014 ( 15) GTTGGCGCAATCGGTAGCGCGTATG 1 chrIII:151006-151662 ( 43) GTTGGCGCAATCGGTAGCGCGTATG 1 chrIX:300031-300508 ( 52) GTTGGCGCAATCGGTAGCGCGTATG 1 chrX:414783-414883 ( 32) GTTGGCGCAATCGGTAGCGCGTATG 1 chrXII:656834-657216 ( 2) TGTGGCGTAGTCGGTAGCGCGCTCC 1 chrVII:115339-115735 ( 6) GTTAGCTCAGTTGGTAGAGCGTTCG 1 chrXII:875176-875614 ( 36) GTTAGCTCAGTTGGTAGAGCGTTCG 1 chrXVI:768997-769509 ( 70) GTTAGCTCAGTTGGTAGAGCGTTCG 1 chrXIV:96000-96559 ( 54) GTTAGTGTAGTGGTTATCATCCCAC 1 chrVII:779394-779927 ( 11) GTTAGTGTAGTGGTTATCATCCCAC 1 chrVIII:475485-475981 ( 66) AATAGTGTAGCGGCTATCACGTTGC 1 chrVII:544322-544921 ( 48) GATAGTTTAATGGTCAGAATGGGCG 1 chrIV:568701-569320 ( 9) GATAGTTTAATGGTCAGAATGGGCG 1 chrVII:531384-531811 ( 68) GATAGTTTAATGGTCAGAATGGGCG 1 chrXV:571743-572144 ( 70) GATAGTTTAATGGTCAGAATGGGCG 1 chrXI:140662-141422 ( 68) TATAGTGTAACGGCTATCACATCAC 1 chrII:644960-645425 ( 30) TATAGTGTAACGGCTATCACATCAC 1 chrXVI:209999-210469 ( 50) TATAGTGTAACGGCTATCACATCAC 1 chrIX:370225-370618 ( 51) TATAGTGTAACGGCTATCACATCAC 1 chrX:422726-422826 ( 22) AGTAGCTCAGTAGGAAGAGCGTCAG 1 chrIV:1175601-1176063 ( 52) AGTAGCTCAGTAGGAAGAGCGTCAG 1 chrXI:490773-491215 ( 29) CGTGGCCCAATGGTCACGGCGTCTG 1 chrX:233672-233772 ( 51) CGTGGCCCAATGGTCACGGCGTCTG 1 chrXII:92331-92729 ( 73) TGTGGTCTAGTGGTATGATTCTCGC 1 chrVI:101166-101568 ( 64) TGTGGTCTAGTGGTATGATTCTCGC 1 chrI:138947-139355 ( 56) TGTGGTCTAGTGGTATGATTCTCGC 1 chrVII:794201-795177 ( 41) AATAGTGCAAGTGGAAGCGTTTTTC 1 chrVIII:62540-62935 ( 73) CTTAGTATAGTGGTTAGTACACATC 1 chrXIII:145928-147611 ( 59) GGTAGTGAAGTCCATACCGTGGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KDTAGYGYARTGGKTAKMRCGTHHS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 45600 bayes= 11.7322 E= 1.9e-058 -142 -118 114 28 49 -1177 40 4 -1177 -1177 -1177 171 117 -1177 69 -1177 -1177 -1177 236 -1177 -1177 93 -1177 104 -341 -45 155 -25 -341 93 -1177 97 171 -1177 -1177 -1177 58 -1177 148 -1177 -1177 -45 -276 144 -242 4 169 -142 -1177 -276 232 -1177 -341 -45 82 67 -83 -18 -1177 110 158 -1177 -1177 -183 -1177 -118 155 17 17 155 -177 -341 67 -1177 114 -183 -1177 182 -1177 4 -110 -45 148 -83 -1177 -77 -45 128 -61 93 -77 4 -25 93 -77 -25 -1177 93 169 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KDTAGYGYARTGGKTAKMRCGTHHS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 35 E= 1.9e-058 0.114286 0.085714 0.428571 0.371429 0.428571 0.000000 0.257143 0.314286 0.000000 0.000000 0.000000 1.000000 0.685714 0.000000 0.314286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.371429 0.000000 0.628571 0.028571 0.142857 0.571429 0.257143 0.028571 0.371429 0.000000 0.600000 1.000000 0.000000 0.000000 0.000000 0.457143 0.000000 0.542857 0.000000 0.000000 0.142857 0.028571 0.828571 0.057143 0.200000 0.628571 0.114286 0.000000 0.028571 0.971429 0.000000 0.028571 0.142857 0.342857 0.485714 0.171429 0.171429 0.000000 0.657143 0.914286 0.000000 0.000000 0.085714 0.000000 0.085714 0.571429 0.342857 0.342857 0.571429 0.057143 0.028571 0.485714 0.000000 0.428571 0.085714 0.000000 0.685714 0.000000 0.314286 0.142857 0.142857 0.542857 0.171429 0.000000 0.114286 0.142857 0.742857 0.200000 0.371429 0.114286 0.314286 0.257143 0.371429 0.114286 0.257143 0.000000 0.371429 0.628571 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KDTAGYGYARTGGKTAKMRCGTHHS MEME-3 regular expression -------------------------------------------------------------------------------- [GT][ATG]T[AG]G[TC][GT][TC]A[GA]T[GC]G[TG]TA[GT][CA][AG][CT]GT[CTA][CAT][GC] -------------------------------------------------------------------------------- Time 1158.73 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:301104-301671 7.92e-01 100 chrVIII:237417-238162 4.69e-01 100 chrXIV:771802-772402 1.70e-01 100 chrVII:147927-149483 8.70e-01 100 chrXI:230936-231632 1.09e-01 100 chrI:138947-139355 1.01e-03 55_[+3(7.96e-07)]_20 chrIV:1305251-1306192 4.07e-03 11_[-1(6.23e-07)]_68 chrXVI:822643-824255 5.44e-01 100 chrXIII:660069-663102 4.06e-01 100 chrVII:483244-483775 5.00e-04 25_[-1(1.19e-06)]_54 chrVII:364877-366767 9.75e-01 100 chrXI:333506-335018 9.68e-01 100 chrIV:555284-556633 6.83e-01 100 chrIII:82055-82695 9.32e-01 100 chrXVI:431913-434407 2.06e-01 100 chrIV:975888-977244 3.69e-01 100 chrXI:513017-513608 4.83e-04 78_[+1(3.85e-08)]_1 chrIX:370225-370618 2.29e-05 50_[+3(1.04e-08)]_25 chrXIV:559531-560813 6.06e-01 100 chrIV:884271-884748 4.25e-05 4_[-1(1.08e-08)]_75 chrXII:367995-370968 3.10e-01 100 chrIX:336056-336612 1.99e-04 73_[+1(3.85e-08)]_6 chrII:234669-235977 7.92e-01 100 chrXI:382128-382528 7.78e-02 100 chrXVI:209999-210469 2.06e-11 16_[+1(9.27e-10)]_12_[-3(1.04e-08)]_\ 26 chrVII:371194-371543 1.53e-01 100 chrXV:677836-679133 9.99e-01 100 chrXII:86923-87218 2.83e-01 100 chrVII:806107-807793 5.00e-01 100 chrXV:779715-781011 5.04e-01 100 chrXIII:145928-147611 4.19e-03 58_[-3(3.34e-06)]_17 chrV:166848-167657 8.95e-01 100 chrXVI:622270-622877 3.31e-04 25_[+1(3.85e-08)]_54 chrII:412944-415352 1.00e+00 100 chrIV:599040-600326 9.99e-01 100 chrXV:587204-589324 1.38e-01 100 chrIV:768266-768965 4.86e-01 100 chrXIII:747711-748145 2.73e-05 22_[+1(9.69e-09)]_57 chrVII:270-922 9.93e-01 100 chrXII:728320-728590 8.62e-01 100 chrI:65160-65434 5.50e-01 100 chrX:540947-541047 9.87e-01 100 chrVII:310510-312629 7.55e-01 100 chrVIII:401027-401552 3.92e-01 100 chrXII:837628-839421 5.60e-01 100 chrXIII:258873-259375 8.86e-01 100 chrXIV:104573-109330 4.76e-01 100 chrXIV:662938-665613 9.02e-02 100 chrII:197174-197865 2.26e-14 32_[+2(1.69e-11)]_10_[-1(8.01e-10)]_\ 11 chrXVI:768997-769509 1.07e-12 12_[+1(2.17e-09)]_36_[-3(4.81e-10)]_\ 6 chrXIII:91083-91504 4.10e-01 100 chrIV:1449818-1451425 9.52e-01 100 chrXV:505721-507038 1.09e-02 100 chrXIII:225149-226897 2.86e-01 100 chrVII:876171-879058 4.05e-01 100 chrXI:517141-518301 9.97e-01 100 chrX:396560-396660 1.17e-07 30_[+1(1.87e-10)]_49 chrVI:210431-210987 8.79e-08 13_[-2(3.88e-11)]_61 chrXVI:338456-339381 4.72e-01 100 chrVI:95411-95941 2.26e-01 100 chrXI:302710-303206 5.34e-01 100 chrXII:818500-820430 8.93e-02 100 chrXII:47357-49128 1.31e-01 100 chrXI:46719-47006 6.24e-01 100 chrV:269182-270206 3.06e-01 100 chrIV:892848-894366 2.51e-01 100 chrVII:205315-206408 7.91e-01 100 chrXIII:352059-353250 2.73e-02 100 chrXIV:61564-64556 5.94e-01 100 chrXIII:67020-68064 5.98e-01 100 chrXII:514085-514851 5.49e-01 100 chrVII:1004039-1004410 9.42e-01 100 chrXI:111584-111768 6.66e-01 100 chrII:45562-46835 9.00e-01 100 chrXII:1002267-1003017 5.54e-01 100 chrIII:191-1038 7.55e-01 100 chrV:298839-301541 7.07e-01 100 chrXII:373992-374674 4.03e-01 100 chrIV:992687-993200 8.20e-01 100 chrXII:97081-97882 9.09e-01 100 chrIII:123318-124144 9.28e-01 100 chrXVI:571976-572567 1.67e-01 100 chrVI:63894-65370 9.55e-01 100 chrXIV:632402-632890 6.11e-14 10_[+2(4.22e-13)]_10_[-1(7.45e-08)]_\ 33 chrVII:774150-774700 1.38e-06 16_[-1(8.01e-10)]_63 chrXII:348063-348692 9.79e-01 100 chrII:36238-36830 3.64e-01 100 chrXII:897675-899742 4.63e-01 100 chrXV:903617-906417 4.39e-01 100 chrVIII:62540-62935 4.66e-03 72_[+3(1.40e-06)]_3 chrVI:222792-224139 9.99e-01 100 chrII:9357-9941 2.29e-03 37_[-1(4.39e-07)]_42 chrXV:1003919-1004968 9.98e-01 100 chrIV:83433-83848 1.09e-01 100 chrXV:159194-160741 5.92e-01 100 chrVII:700223-701216 3.51e-14 13_[+2(1.21e-12)]_18_[-1(8.62e-09)]_\ 22 chrXVI:302675-302876 1.08e-01 100 chrXII:515250-516768 6.25e-02 100 chrXVI:819317-820831 2.81e-01 100 chrVIII:388627-388990 1.68e-01 100 chrV:482930-484220 9.98e-01 100 chrXI:617614-619350 4.90e-01 100 chrXVI:642033-643602 2.07e-01 100 chrXII:1051937-1052204 6.06e-06 59_[+1(8.01e-10)]_20 chrXII:260973-265077 1.14e-01 100 chrII:544390-544902 9.08e-01 100 chrVIII:55529-56341 5.69e-01 100 chrXVI:920864-921446 8.96e-01 100 chrXIII:22106-24807 6.80e-01 100 chrXV:79726-80133 6.38e-01 100 chrXIII:131653-132090 2.73e-05 12_[+1(9.69e-09)]_67 chrIV:1488577-1490694 4.78e-01 100 chrV:481296-482713 3.26e-01 100 chrVI:180695-181232 1.18e-06 69_[+1(1.87e-10)]_10 chrIX:426622-427805 5.72e-01 100 chrXVI:927789-928325 2.02e-01 100 chrXV:464279-464831 8.26e-07 16_[-1(3.23e-09)]_63 chrXII:932084-932504 9.22e-01 100 chrIV:1443737-1445070 6.79e-01 100 chrXV:383030-383400 8.19e-01 100 chrVII:702868-703259 6.56e-01 100 chrXIII:624470-625231 8.07e-01 100 chrVIII:145227-146675 8.81e-01 100 chrIV:488452-489186 2.54e-13 36_[+1(9.27e-10)]_10_[-2(1.32e-10)]_\ 7 chrV:321930-323165 9.61e-01 100 chrVII:440481-441027 3.64e-07 20_[+1(3.85e-08)]_32_[-3(2.78e-06)]_\ 2 chrXV:986982-987981 7.49e-01 100 chrII:350611-351066 1.81e-07 43_[+3(8.46e-11)]_32 chrXV:832235-832838 9.96e-01 100 chrX:525877-525977 8.91e-01 100 chrVII:561108-561719 9.91e-01 100 chrII:644960-645425 2.06e-11 29_[+3(1.04e-08)]_12_[-1(9.27e-10)]_\ 13 chrXII:592339-592827 8.51e-13 52_[-2(9.38e-16)]_22 chrXII:201640-203073 7.04e-01 100 chrXVI:775644-776124 9.42e-01 100 chrXIII:650738-653019 3.06e-01 100 chrXIV:442794-444814 3.94e-01 100 chrIV:1079148-1081549 9.57e-01 100 chrVII:479120-482975 2.16e-03 62_[+2(3.40e-05)]_12 chrXI:379277-379520 1.44e-01 100 chrXI:257497-260682 8.60e-01 100 chrV:174727-175067 5.16e-01 100 chrXI:457923-458979 9.47e-01 100 chrXV:594313-594642 1.00e+00 100 chrIV:929253-930362 2.83e-01 100 chrXIII:625833-627259 2.40e-01 100 chrVII:405468-405941 4.32e-01 100 chrX:531591-531691 9.74e-01 100 chrIV:305483-307851 9.81e-01 100 chrVII:968900-969434 6.97e-01 100 chrXIII:872486-873101 1.33e-01 20_[-1(9.19e-05)]_59 chrVII:881763-884091 8.12e-02 100 chrXIII:480377-480814 7.59e-01 100 chrXII:1028194-1028594 3.18e-01 100 chrVIII:147471-149242 7.51e-01 100 chrII:285631-288431 4.76e-01 100 chrVII:519367-521228 1.41e-01 100 chrX:68785-68885 3.54e-02 100 chrXVI:425277-425594 4.23e-01 100 chrIII:227755-228288 3.73e-03 41_[-1(1.70e-06)]_38 chrIII:149720-150218 3.26e-03 42_[-1(1.34e-06)]_37 chrII:444767-444962 1.84e-01 100 chrV:487083-487608 1.41e-06 44_[+1(9.27e-10)]_35 chrVII:185483-185895 5.40e-01 100 chrIV:411079-411645 5.74e-01 100 chrXII:282742-284267 5.09e-01 100 chrXII:975690-976175 9.73e-01 100 chrIV:221141-222360 5.88e-01 100 chrX:439964-440064 9.22e-01 100 chrIV:491432-492757 7.66e-01 100 chrX:144201-144301 9.10e-01 100 chrXV:113561-113881 7.57e-01 100 chrXI:282582-284868 4.49e-01 100 chrXIV:65063-66505 1.18e-01 100 chrVIII:48272-48520 4.24e-01 100 chrXIV:568059-568630 8.58e-01 100 chrX:378235-378335 1.32e-13 34_[+2(9.80e-11)]_10_[-1(1.24e-09)]_\ 9 chrIII:228727-230754 8.58e-02 100 chrX:293773-293873 3.85e-01 100 chrIV:525471-527518 8.04e-01 100 chrII:431024-431831 9.32e-01 100 chrXVI:828842-829370 4.32e-01 100 chrV:354685-355307 3.04e-06 29_[-1(9.27e-10)]_50 chrIX:83511-85207 9.72e-02 100 chrXVI:821593-822313 5.93e-01 100 chrXV:571743-572144 9.96e-05 69_[+3(9.38e-09)]_6 chrX:721072-721172 3.57e-01 100 chrXV:32958-33800 9.71e-01 100 chrX:233672-233772 3.73e-06 50_[+3(9.62e-08)]_25 chrXII:522214-523694 3.91e-01 100 chrXII:424080-424501 5.42e-01 100 chrVII:779394-779927 1.33e-11 10_[+3(3.87e-09)]_12_[-1(6.88e-10)]_\ 32 chrXII:734603-734930 6.41e-01 100 chrXI:490773-491215 1.77e-08 28_[+3(9.62e-08)]_13_[-1(3.04e-07)]_\ 13 chrXVI:74982-76834 3.22e-01 100 chrVII:959297-959540 1.41e-01 100 chrXIV:725931-726392 2.27e-14 31_[+1(4.39e-07)]_20_[-2(5.04e-15)]_\ 2 chrX:424273-424373 4.65e-11 40_[-2(5.04e-15)]_34 chrVIII:74712-76512 3.58e-01 100 chrX:227701-227801 4.91e-01 100 chrI:68321-69495 2.29e-01 100 chrXIII:752782-754297 3.09e-02 100 chrII:555821-558188 9.43e-02 35_[+1(5.76e-05)]_44 chrXIV:525078-525292 7.98e-01 100 chrVII:401388-401606 9.74e-01 100 chrIV:1156288-1156935 1.65e-01 100 chrV:422773-425457 2.68e-01 100 chrIX:138121-139248 5.62e-02 2_[-2(7.67e-05)]_72 chrVII:319232-320136 4.02e-01 100 chrII:87869-88607 9.99e-01 100 chrIII:295314-296032 9.16e-01 100 chrIII:70957-71854 9.61e-01 100 chrIV:118420-118891 1.29e-01 29_[+2(8.17e-05)]_45 chrXII:229516-231125 2.86e-01 100 chrXV:226414-226898 2.34e-08 13_[+1(1.87e-10)]_66 chrXII:832817-833923 5.24e-01 100 chrV:249801-251081 1.54e-01 100 chrXVI:376332-377367 6.14e-01 100 chrXI:430701-433159 9.06e-01 100 chrXV:218627-218883 9.64e-01 100 chrXIII:586387-587135 8.24e-01 100 chrX:617711-617811 8.51e-13 44_[+2(9.38e-16)]_30 chrIV:410186-410805 1.34e-02 32_[-2(7.67e-05)]_42 chrXV:988352-989647 5.92e-01 100 chrX:122145-122245 4.58e-01 100 chrXIII:741743-743473 1.10e-01 100 chrII:326564-327070 2.54e-13 33_[+1(9.27e-10)]_10_[-2(1.32e-10)]_\ 10 chrXII:636680-640290 5.90e-01 100 chrVI:183231-183863 5.33e-02 100 chrIV:578834-580809 1.75e-01 100 chrVII:289036-290199 6.17e-01 100 chrXV:866559-868184 7.09e-02 100 chrVII:363856-364453 3.51e-01 100 chrXV:684116-686257 5.50e-01 100 chrXII:84052-84366 6.59e-01 100 chrV:469215-469709 1.01e-07 52_[+2(9.80e-11)]_22 chrXIII:162961-164375 5.44e-01 100 chrIII:266927-267300 9.07e-01 100 chrXIII:362942-363297 6.19e-03 36_[-1(1.42e-06)]_43 chrXIII:873513-874288 4.15e-01 100 chrXI:243135-246998 4.40e-01 100 chrI:182252-183190 2.26e-01 100 chrV:101825-102650 1.91e-01 100 chrVI:82295-84413 5.85e-01 100 chrXV:340140-340733 9.85e-01 100 chrVI:167196-167700 8.79e-08 47_[+2(3.88e-11)]_27 chrXVI:731623-732295 9.76e-01 100 chrV:66456-69688 4.46e-02 100 chrXV:424086-425415 6.55e-01 100 chrX:414783-414883 2.41e-13 31_[+3(1.40e-10)]_13_[-1(5.04e-10)]_\ 10 chrXI:74408-74994 1.34e-04 16_[-1(7.45e-08)]_63 chrXI:307933-308423 1.32e-13 24_[+1(1.24e-09)]_10_[-2(9.80e-11)]_\ 19 chrXII:281923-282457 5.04e-01 100 chrXII:919348-925075 4.57e-01 100 chrXII:783939-784524 8.18e-01 100 chrVIII:125914-127822 9.78e-01 100 chrXVI:701847-702348 8.42e-01 100 chrIII:177028-178804 8.91e-01 100 chrXI:141696-143788 8.38e-01 100 chrIII:168116-168574 1.77e-12 14_[+1(2.17e-09)]_12_[-3(8.46e-11)]_\ 28 chrIV:616454-618791 8.67e-01 100 chrII:164653-164854 9.63e-01 100 chrIV:802568-803007 2.23e-12 2_[+1(2.17e-09)]_12_[-3(8.46e-11)]_\ 40 chrXV:1027795-1029264 4.81e-01 100 chrXII:1011715-1012504 8.43e-01 100 chrVII:436737-440034 8.77e-01 100 chrXVI:641229-641650 4.15e-01 100 chrXIII:540365-540930 9.58e-02 100 chrIX:248608-249389 2.58e-01 100 chrXVI:645334-646227 8.86e-01 100 chrIII:34467-35303 8.94e-01 100 chrXII:673482-675196 7.68e-01 100 chrXIII:219483-221086 1.54e-01 100 chrVIII:114605-116390 6.48e-01 100 chrXVI:55842-56421 5.77e-01 100 chrV:438524-438998 2.14e-06 32_[-1(1.24e-09)]_47 chrII:504519-505271 1.41e-01 100 chrXIII:759042-763187 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5.25e-01 100 chrVI:224322-226007 1.66e-01 100 chrII:407493-410490 4.81e-01 100 chrXIV:96000-96559 1.33e-11 20_[+1(6.88e-10)]_12_[-3(3.87e-09)]_\ 22 chrIV:1359434-1361339 6.84e-01 100 chrXII:252958-255145 9.16e-01 100 chrXV:908431-911589 3.98e-01 100 chrVIII:466804-467249 1.32e-04 55_[-1(7.45e-08)]_24 chrV:310697-312301 3.18e-01 100 chrVI:53168-56026 5.36e-01 100 chrIV:434026-434859 1.00e+00 100 chrXIV:172646-174736 3.97e-01 100 chrXIV:301334-302327 2.15e-01 100 chrXI:164936-165471 5.03e-01 100 chrXIV:661944-662518 5.32e-01 100 chrVII:989815-990307 4.84e-01 100 chrXIV:374573-375118 9.60e-02 100 chrIV:520731-521168 2.70e-01 100 chrVIII:475485-475981 3.92e-12 31_[+1(4.99e-11)]_13_[-3(7.58e-09)]_\ 10 chrIV:1236447-1238745 7.56e-01 100 chrXVI:303051-304356 4.40e-03 9_[-1(1.26e-06)]_70 chrXIII:914916-915311 8.26e-01 100 chrXVI:188660-188936 2.86e-01 100 chrI:180929-181496 7.02e-02 100 chrVII:514933-519014 2.85e-01 100 chrXV:252847-254744 2.08e-01 100 chrIX:254249-254547 1.58e-01 100 chrVI:162024-162389 6.59e-01 100 chrXVI:559926-560275 9.83e-01 100 chrXV:216284-216725 2.76e-03 61_[-2(1.44e-06)]_13 chrXIV:241418-241755 6.62e-01 100 chrVII:226819-227044 6.30e-01 100 chrIX:325737-326209 4.49e-01 100 chrXII:506542-507506 2.36e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************