******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWR1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:347414-347921 1.0000 100 chrVIII:296791-297226 1.0000 100 chrXV:184932-185644 1.0000 100 chrVII:141493-141846 1.0000 100 chrXI:163708-164385 1.0000 100 chrI:138973-139349 1.0000 100 chrIV:1300066-1301322 1.0000 100 chrXVI:860131-860722 1.0000 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100 chrXIV:442763-444811 1.0000 100 chrIII:149729-150187 1.0000 100 chrXVI:267206-267923 1.0000 100 chrXI:416712-416979 1.0000 100 chrX:651874-651974 1.0000 100 chrIV:1175608-1176107 1.0000 100 chrII:644640-645899 1.0000 100 chrXV:307842-308134 1.0000 100 chrIV:1116448-1117234 1.0000 100 chrVI:233876-234201 1.0000 100 chrIII:64742-65687 1.0000 100 chrVII:922043-922383 1.0000 100 chrI:166168-166588 1.0000 100 chrVI:149049-149799 1.0000 100 chrX:555102-555202 1.0000 100 chrXIII:731882-733603 1.0000 100 chrI:180957-181504 1.0000 100 chrII:142171-142928 1.0000 100 chrXV:281321-281536 1.0000 100 chrII:405687-406202 1.0000 100 chrXIV:56607-58684 1.0000 100 chrXV:639162-639500 1.0000 100 chrV:61102-62212 1.0000 100 chrXIII:572185-573124 1.0000 100 chrXV:326760-327090 1.0000 100 chrIV:68250-69496 1.0000 100 chrX:422649-422749 1.0000 100 chrV:431013-432236 1.0000 100 chrVII:531365-531796 1.0000 100 chrXIV:52561-52879 1.0000 100 chrVII:857110-857591 1.0000 100 chrXV:712347-712956 1.0000 100 chrXVI:429793-430009 1.0000 100 chrVII:876165-878117 1.0000 100 chrXIII:755027-755209 1.0000 100 chrIX:174894-175202 1.0000 100 chrIII:280020-280458 1.0000 100 chrXII:231704-234130 1.0000 100 chrXII:713158-713671 1.0000 100 chrXVI:729750-730117 1.0000 100 chrII:495152-496016 1.0000 100 chrII:141200-141944 1.0000 100 chrV:486977-487603 1.0000 100 chrIV:1075058-1075787 1.0000 100 chrXV:70222-70587 1.0000 100 chrXV:901470-901652 1.0000 100 chrX:396028-396128 1.0000 100 chrXII:48712-49219 1.0000 100 chrIV:1095170-1095655 1.0000 100 chrXII:202873-203119 1.0000 100 chrIV:859014-859736 1.0000 100 chrV:409619-410053 1.0000 100 chrXII:1051939-1052221 1.0000 100 chrXV:866409-868073 1.0000 100 chrIV:292520-293033 1.0000 100 chrV:311738-312293 1.0000 100 chrX:157479-157579 1.0000 100 chrV:53535-54195 1.0000 100 chrXV:968173-968557 1.0000 100 chrXIV:568048-568887 1.0000 100 chrXV:288052-288395 1.0000 100 chrXIII:652070-652932 1.0000 100 chrIV:1016977-1017478 1.0000 100 chrVII:316802-317399 1.0000 100 chrV:435620-435997 1.0000 100 chrXIII:742337-743445 1.0000 100 chrV:492235-492555 1.0000 100 chrIX:254247-254540 1.0000 100 chrX:374180-374280 1.0000 100 chrVII:787373-788733 1.0000 100 chrXIII:768194-768444 1.0000 100 chrXVI:581854-582320 1.0000 100 chrV:249795-250956 1.0000 100 chrVI:251287-253248 1.0000 100 chrIX:325744-326189 1.0000 100 chrVII:533825-535193 1.0000 100 chrXV:779725-780971 1.0000 100 chrXV:110878-111193 1.0000 100 chrV:348762-349523 1.0000 100 chrXV:421429-422039 1.0000 100 chrIV:1436141-1436735 1.0000 100 chrIV:1352314-1353395 1.0000 100 chrV:288143-289169 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWR1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWR1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWR1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.305 C 0.195 G 0.195 T 0.305 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWR1/background): A 0.309 C 0.191 G 0.191 T 0.309 ******************************************************************************** ******************************************************************************** MOTIF GRTCVSSGGTTCGAHYCYSSBHKDGRKCR MEME-1 width = 29 sites = 70 llr = 1339 E-value = 8.2e-257 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRTCVSSGGTTCGAHYCYSSBHKDGRKCR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 132:2:13::::2a2::::2:31213125 pos.-specific C 2118453::::a::25a65334222128: probability G 651:3356a:::8:2:::354:44644:3 matrix T ::62:21::aa:::45:31:3332113:1 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 **** * * Relative 1.4 * ****** * Entropy 1.2 * ****** * * (27.6 bits) 1.0 * * ******* *** * 0.7 ** * ******** ***** * 0.5 ************** ******* * ** 0.2 ************** ************** 0.0 ----------------------------- Multilevel GGTCCCGGGTTCGATCCCCGGCGGGGGCA consensus CA TGGCA A CT TGCCATT AT G sequence AT A TT A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCVSSGGTTCGAHYCYSSBHKDGRKCR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrIV:1256776-1257284 - 28 5.05e-13 CCCAAGCATG GGGCCCGGGTTCGATTCCCGGCTTCCGCA TTTTTTGTGC chrX:531589-531689 + 14 1.20e-12 GCCATCGTTG GGCCCCCGGTTCGATTCCGGGCTTGCGCA GTTTCTTTTC chrVII:845459-845954 + 35 1.20e-12 GCCATCGTTG GGCCCCCGGTTCGATTCCGGGCTTGCGCA ATGTTTTTTC chrXV:226330-226886 - 53 1.20e-12 GCCATCGTTG GGCCCCCGGTTCGATTCCGGGCTTGCGCA AATTTTTTGT chrXVI:860131-860722 + 45 1.20e-12 GCCATCGTTG GGCCCCCGGTTCGATTCCGGGCTTGCGCA GATTTTATTT chrVIII:475511-475905 - 48 1.98e-12 ACACGGCAAA GGTCCCGAGTTCGATCCTCGGTTGGAACA TTTTAACATC chrIV:488458-489209 - 14 3.76e-12 ACACGGCGAA GATCCCGAGTTCGAACCTCGGTTGGATCA GAATCTTTTT chrIII:123322-123797 - 68 9.37e-12 GGGA GGTCCCGGGTTCGAGTCCCGGCTCGCCCC ACATTGTTTT chrXII:1051939-1052221 - 41 4.35e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCTAGAGACCA TTATTTTTTT chrIV:1175608-1176107 + 66 4.35e-11 ATAATCTGAA GGTCGAGAGTTCGAACCTCCCCTGGAGCA TTTTTG chrII:197266-197835 + 39 4.35e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCTAGAGACCA TTTTTTTGCA chrX:390818-390918 - 56 4.35e-11 ATAATCTGAA GGTCGAGAGTTCGAACCTCCCCTGGAGCA TATTTTTATA chrXV:976286-976622 + 61 4.35e-11 ATAATCTGAA GGTCGAGAGTTCGAACCTCCCCTGGAGCA ATATTTTTTT chrV:443056-443380 - 34 4.35e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCTAGAGACCA TATTTTTTTT chrXVI:819339-819834 + 38 4.35e-11 ATAACGCGGG GATCAGCGGTTCGATCCCGCTAGAGACCA TTTATTTTTG chrVII:823338-823699 + 59 6.44e-11 ACACGCAGAA CGTCCCCAGTTCGATCCTGGGCGAAATCA TTTTTTGAAG chrXI:307903-308426 - 30 6.44e-11 ACACGCAGAA CGTCCCCAGTTCGATCCTGGGCGAAATCA ATTTTTTTTT chrV:438517-439005 + 34 6.44e-11 ACACGCAGAA CGTCCCCAGTTCGATCCTGGGCGAAATCA ATTTTTTTTT chrXIII:586390-586888 - 47 6.44e-11 ACACGCAGAA CGTCCCCAGTTCGATCCTGGGCGAAATCA TTTTTTTGAA chrXIII:420316-420880 - 40 6.44e-11 ACACGCAGAA CGTCCCCAGTTCGATCCTGGGCGAAATCA TTTTTATCTC chrV:311738-312293 - 58 7.32e-11 GCAAGGAAGA GGTCATCGGTTCGATTCCGGTTGCGTCCA ATGAAATCTT chrVII:779417-779956 + 23 7.32e-11 TCCAAGGTGG GGACACGGGTTCGATTCTCGTACCGCTCA AGATTACTTT chrXIV:96008-96503 - 36 7.32e-11 TCCAAGGTGG GGACACGGGTTCGATTCTCGTACCGCTCA AATTTTTTGA chrXVI:581854-582320 + 69 1.07e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCTACAGGGCT TTC chrXIII:480433-480816 - 47 1.07e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCTACAGGGCT TCTTTTTTTG chrIV:1201557-1202017 + 57 1.07e-10 TTAATCATAA GGTTAGGGGTTCGAGCCCCCTACAGGGCT AATAACACAT chrIX:299925-300504 - 64 1.07e-10 AATCATAA GGTTAGGGGTTCGAGCCCCCTACAGGGCT ATCTTTTTAC chrVII:730968-731452 + 22 2.20e-10 TTAATCGCAA GATCGTGAGTTCAACCCTCACTGGGGTCG TTTTTTGCTT chrVI:137244-137701 - 64 2.20e-10 AATCGCAA GATCGTGAGTTCAACCCTCACTGGGGTCG TTTTTTTATT chrXVI:810579-810840 + 62 2.20e-10 TTAATCGCAA GATCGTGAGTTCAACCCTCACTGGGGTCG TATTTTTTAC chrXI:74407-75009 + 11 2.20e-10 TTAATCGCAA GATCGTGAGTTCAACCCTCACTGGGGTCG CTTATTTTTA chrXIV:632410-632859 + 60 2.20e-10 TTAATCGCAA GATCGTGAGTTCAACCCTCACTGGGGTCG TTTTTTTTCT chrIV:1016977-1017478 - 30 2.47e-10 CTCACCGTGG AGACCGGGGTTCGACTCCCCGCTTCGGAG TTTCTTTTTT chrX:233726-233826 + 58 5.43e-10 CGAACCAGGA GATTCCAGGTTCGAGTCCTGGCGGGGAAG AATATTCTTT chrV:249795-250956 + 4 7.50e-10 GGA CAACCCCGGTTCGAATCCGGGTAGGACCT TTTTTATTCA chrIII:168055-168535 - 56 7.50e-10 TTGATCCGGA CAACCCCGGTTCGAATCCGGGTAGGACCT TTTTTTGAAT chrXI:140595-141459 - 41 1.40e-09 TTCACCGTGG AGACCGGGGTTCGACTCCCCGTATCGGAG TTTTCATTAT chrV:176883-177413 + 44 1.40e-09 TTCACCGTGG AGACCGGGGTTCGACTCCCCGTATCGGAG TACTTTTTTG chrXIII:290598-291148 + 21 1.40e-09 TTCACCGTGG AGACCGGGGTTCGACTCCCCGTATCGGAG TCTTCTTTTT chrV:354704-355338 + 6 1.40e-09 CGTGG AGACCGGGGTTCGACTCCCCGTATCGGAG TACTTTTTTG chrXVI:435627-436176 - 42 1.70e-09 CAAATCTGTT GGTCCTTAGTTCGATCCTGAGTGCGAGCT TTCTTTTTTT chrX:197252-197352 - 18 1.88e-09 GCATGGGAGA GGTCTCCGGTTCGATTCCGGACTCGTCCA ATTTCTTTTT chrXVI:856728-857120 + 72 1.88e-09 GCATGGGAGA GGTCTCCGGTTCGATTCCGGACTCGTCCA chrV:130812-131442 - 5 2.07e-09 TTGATCCGAA CAACCCCGGTTCGAATCCGGGTAAGACCT ATTT chrXVI:769033-769474 - 4 2.07e-09 GATACCGAAA TGTCAGGGGTTCGAGCCCCCTATGAGGAG TTC chrVII:115333-115744 + 67 2.07e-09 GATACCGAAA TGTCAGGGGTTCGAGCCCCCTATGAGGAG TTCTT chrV:492235-492555 - 7 3.04e-09 CGAACCAGAA GATTCCAGGTTCAAGTCCTGGCGGGGAAG GATTAT chrXII:374198-374672 + 14 3.04e-09 CGAACCAGAA GATTCCAGGTTCAAGTCCTGGCGGGGAAG ATTTTTTTGC chrIV:619702-620212 - 62 3.04e-09 CGAACCAGAA GATTCCAGGTTCAAGTCCTGGCGGGGAAG ATTTTTTATA chrX:374180-374280 - 33 3.34e-09 CTAATCAGAA GATTATGGGTTCGACCCCCATCGTGAGTG CTTTGTTTCT chrII:405687-406202 + 27 3.34e-09 CTAATCAGAA GATTATGGGTTCGACCCCCATCGTGAGTG CTTTGTTTCT chrX:355195-355295 + 10 3.34e-09 TAATCAGAA GATTATGGGTTCGACCCCCATCGTGAGTG CTTTGTTTCT chrXII:167691-168248 - 25 4.01e-09 TGGGCTTTGC CCGCGCAGGTTCGAGTCCTGCAGTTGTCG TTATTTTTTC chrXIII:259015-259377 - 12 4.01e-09 TGGGCTTTGC CCGCGCAGGTTCGAGTCCTGCAGTTGTCG TTATTTTTTG chrII:266203-266675 + 33 5.75e-09 GTAATGTGGA GATCATCGGTTCAAATCCGATTGGAAGCA TTTTTTTGAA chrXVI:744099-744514 + 71 6.85e-09 GTAATGCAAA GGTCGTTAGTTCAATTCTGACAGGTGGCA A chrII:9370-9946 + 30 6.85e-09 GGACGGTTGT CCGCGCGAGTTCGAACCTCGCATCCTTCA GTATTTTTTT chrXIV:725909-726336 - 62 6.85e-09 GGACGGTTGT CCGCGCGAGTTCGAACCTCGCATCCTTCA GTATTTTTTT chrIV:519659-519906 + 66 6.85e-09 GGACGGTTGT CCGCGCGAGTTCGAACCTCGCATCCTTCA ATAACT chrXII:426891-427476 + 42 6.85e-09 GTCGCGTGCC AGATCGGGGTTCAATTCCCCGTCGCGGAG AATTTTTTTA chrII:347414-347921 + 41 6.85e-09 GGACGGTTGT CCGCGCGAGTTCGAACCTCGCATCCTTCA GTAATATTTT chrX:415723-415823 - 6 1.14e-08 GCAATCGAAG GGTTGCAGGTTCAATTCCTGTCCGTTTCA ATTTA chrVII:287121-287674 - 3 1.14e-08 GCAATCGAAG GGTTGCAGGTTCAATTCCTGTCCGTTTCA TT chrIV:1095170-1095655 - 8 1.34e-08 GATATCTGGA GGTCCTGTGTTCGATCCACAGAGTTCGCA TTTTTAT chrIII:227775-228288 + 33 1.70e-08 TGGGCTCTGC CCGCGCTGGTTCAAATCCTGCTGGTGTCG TTTAATTTTT chrXVI:689395-689875 + 33 1.70e-08 TGGGCTCTGC CCGCGCTGGTTCAAATCCTGCTGGTGTCG TATTATTTTT chrVI:210431-210895 - 6 3.37e-08 GAAATCTTGA GATCGGGCGTTCGACTCGCCCCCGGGAGA TATTT chrIV:946147-946599 + 49 3.37e-08 GAAATCTTGA GATCGGGCGTTCGACTCGCCCCCGGGAGA TTTTTTTATG chrVIII:62530-63052 + 57 4.49e-08 GTGGCCGATG AAACCCTGGTTCGATTCTAGGAGATGGCA TTTATTTTTT chrXVI:621981-623147 - 26 4.82e-08 GTTATCTGGA GGTCCTGTGTTCGATCCACAGAATTCGCA TTTATTTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCVSSGGTTCGAHYCYSSBHKDGRKCR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1256776-1257284 5e-13 27_[-1]_44 chrX:531589-531689 1.2e-12 13_[+1]_58 chrVII:845459-845954 1.2e-12 34_[+1]_37 chrXV:226330-226886 1.2e-12 52_[-1]_19 chrXVI:860131-860722 1.2e-12 44_[+1]_27 chrVIII:475511-475905 2e-12 47_[-1]_24 chrIV:488458-489209 3.8e-12 13_[-1]_58 chrIII:123322-123797 9.4e-12 67_[-1]_4 chrXII:1051939-1052221 4.4e-11 40_[-1]_31 chrIV:1175608-1176107 4.4e-11 65_[+1]_6 chrII:197266-197835 4.4e-11 38_[+1]_33 chrX:390818-390918 4.4e-11 55_[-1]_16 chrXV:976286-976622 4.4e-11 60_[+1]_11 chrV:443056-443380 4.4e-11 33_[-1]_38 chrXVI:819339-819834 4.4e-11 37_[+1]_34 chrVII:823338-823699 6.4e-11 58_[+1]_13 chrXI:307903-308426 6.4e-11 29_[-1]_42 chrV:438517-439005 6.4e-11 33_[+1]_38 chrXIII:586390-586888 6.4e-11 46_[-1]_25 chrXIII:420316-420880 6.4e-11 39_[-1]_32 chrV:311738-312293 7.3e-11 57_[-1]_14 chrVII:779417-779956 7.3e-11 22_[+1]_49 chrXIV:96008-96503 7.3e-11 35_[-1]_36 chrXVI:581854-582320 1.1e-10 68_[+1]_3 chrXIII:480433-480816 1.1e-10 46_[-1]_25 chrIV:1201557-1202017 1.1e-10 56_[+1]_15 chrIX:299925-300504 1.1e-10 63_[-1]_8 chrVII:730968-731452 2.2e-10 21_[+1]_50 chrVI:137244-137701 2.2e-10 63_[-1]_8 chrXVI:810579-810840 2.2e-10 61_[+1]_10 chrXI:74407-75009 2.2e-10 10_[+1]_61 chrXIV:632410-632859 2.2e-10 59_[+1]_12 chrIV:1016977-1017478 2.5e-10 29_[-1]_42 chrX:233726-233826 5.4e-10 57_[+1]_14 chrV:249795-250956 7.5e-10 3_[+1]_68 chrIII:168055-168535 7.5e-10 55_[-1]_16 chrXI:140595-141459 1.4e-09 40_[-1]_31 chrV:176883-177413 1.4e-09 43_[+1]_28 chrXIII:290598-291148 1.4e-09 20_[+1]_51 chrV:354704-355338 1.4e-09 5_[+1]_66 chrXVI:435627-436176 1.7e-09 41_[-1]_30 chrX:197252-197352 1.9e-09 17_[-1]_54 chrXVI:856728-857120 1.9e-09 71_[+1] chrV:130812-131442 2.1e-09 4_[-1]_67 chrXVI:769033-769474 2.1e-09 3_[-1]_68 chrVII:115333-115744 2.1e-09 66_[+1]_5 chrV:492235-492555 3e-09 6_[-1]_65 chrXII:374198-374672 3e-09 13_[+1]_58 chrIV:619702-620212 3e-09 61_[-1]_10 chrX:374180-374280 3.3e-09 32_[-1]_39 chrII:405687-406202 3.3e-09 26_[+1]_45 chrX:355195-355295 3.3e-09 9_[+1]_62 chrXII:167691-168248 4e-09 24_[-1]_47 chrXIII:259015-259377 4e-09 11_[-1]_60 chrII:266203-266675 5.8e-09 32_[+1]_39 chrXVI:744099-744514 6.9e-09 70_[+1]_1 chrII:9370-9946 6.9e-09 29_[+1]_42 chrXIV:725909-726336 6.9e-09 61_[-1]_10 chrIV:519659-519906 6.9e-09 65_[+1]_6 chrXII:426891-427476 6.9e-09 41_[+1]_30 chrII:347414-347921 6.9e-09 40_[+1]_31 chrX:415723-415823 1.1e-08 5_[-1]_66 chrVII:287121-287674 1.1e-08 2_[-1]_69 chrIV:1095170-1095655 1.3e-08 7_[-1]_64 chrIII:227775-228288 1.7e-08 32_[+1]_39 chrXVI:689395-689875 1.7e-08 32_[+1]_39 chrVI:210431-210895 3.4e-08 5_[-1]_66 chrIV:946147-946599 3.4e-08 48_[+1]_23 chrVIII:62530-63052 4.5e-08 56_[+1]_15 chrXVI:621981-623147 4.8e-08 25_[-1]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCVSSGGTTCGAHYCYSSBHKDGRKCR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRTCVSSGGTTCGAHYCYSSBHKDGRKCR width=29 seqs=70 chrIV:1256776-1257284 ( 28) GGGCCCGGGTTCGATTCCCGGCTTCCGCA 1 chrX:531589-531689 ( 14) GGCCCCCGGTTCGATTCCGGGCTTGCGCA 1 chrVII:845459-845954 ( 35) GGCCCCCGGTTCGATTCCGGGCTTGCGCA 1 chrXV:226330-226886 ( 53) GGCCCCCGGTTCGATTCCGGGCTTGCGCA 1 chrXVI:860131-860722 ( 45) GGCCCCCGGTTCGATTCCGGGCTTGCGCA 1 chrVIII:475511-475905 ( 48) GGTCCCGAGTTCGATCCTCGGTTGGAACA 1 chrIV:488458-489209 ( 14) GATCCCGAGTTCGAACCTCGGTTGGATCA 1 chrIII:123322-123797 ( 68) GGTCCCGGGTTCGAGTCCCGGCTCGCCCC 1 chrXII:1051939-1052221 ( 41) GATCAGCGGTTCGATCCCGCTAGAGACCA 1 chrIV:1175608-1176107 ( 66) GGTCGAGAGTTCGAACCTCCCCTGGAGCA 1 chrII:197266-197835 ( 39) GATCAGCGGTTCGATCCCGCTAGAGACCA 1 chrX:390818-390918 ( 56) GGTCGAGAGTTCGAACCTCCCCTGGAGCA 1 chrXV:976286-976622 ( 61) GGTCGAGAGTTCGAACCTCCCCTGGAGCA 1 chrV:443056-443380 ( 34) GATCAGCGGTTCGATCCCGCTAGAGACCA 1 chrXVI:819339-819834 ( 38) GATCAGCGGTTCGATCCCGCTAGAGACCA 1 chrVII:823338-823699 ( 59) CGTCCCCAGTTCGATCCTGGGCGAAATCA 1 chrXI:307903-308426 ( 30) CGTCCCCAGTTCGATCCTGGGCGAAATCA 1 chrV:438517-439005 ( 34) CGTCCCCAGTTCGATCCTGGGCGAAATCA 1 chrXIII:586390-586888 ( 47) CGTCCCCAGTTCGATCCTGGGCGAAATCA 1 chrXIII:420316-420880 ( 40) CGTCCCCAGTTCGATCCTGGGCGAAATCA 1 chrV:311738-312293 ( 58) GGTCATCGGTTCGATTCCGGTTGCGTCCA 1 chrVII:779417-779956 ( 23) GGACACGGGTTCGATTCTCGTACCGCTCA 1 chrXIV:96008-96503 ( 36) GGACACGGGTTCGATTCTCGTACCGCTCA 1 chrXVI:581854-582320 ( 69) GGTTAGGGGTTCGAGCCCCCTACAGGGCT 1 chrXIII:480433-480816 ( 47) GGTTAGGGGTTCGAGCCCCCTACAGGGCT 1 chrIV:1201557-1202017 ( 57) GGTTAGGGGTTCGAGCCCCCTACAGGGCT 1 chrIX:299925-300504 ( 64) GGTTAGGGGTTCGAGCCCCCTACAGGGCT 1 chrVII:730968-731452 ( 22) GATCGTGAGTTCAACCCTCACTGGGGTCG 1 chrVI:137244-137701 ( 64) GATCGTGAGTTCAACCCTCACTGGGGTCG 1 chrXVI:810579-810840 ( 62) GATCGTGAGTTCAACCCTCACTGGGGTCG 1 chrXI:74407-75009 ( 11) GATCGTGAGTTCAACCCTCACTGGGGTCG 1 chrXIV:632410-632859 ( 60) GATCGTGAGTTCAACCCTCACTGGGGTCG 1 chrIV:1016977-1017478 ( 30) AGACCGGGGTTCGACTCCCCGCTTCGGAG 1 chrX:233726-233826 ( 58) GATTCCAGGTTCGAGTCCTGGCGGGGAAG 1 chrV:249795-250956 ( 4) CAACCCCGGTTCGAATCCGGGTAGGACCT 1 chrIII:168055-168535 ( 56) CAACCCCGGTTCGAATCCGGGTAGGACCT 1 chrXI:140595-141459 ( 41) AGACCGGGGTTCGACTCCCCGTATCGGAG 1 chrV:176883-177413 ( 44) AGACCGGGGTTCGACTCCCCGTATCGGAG 1 chrXIII:290598-291148 ( 21) AGACCGGGGTTCGACTCCCCGTATCGGAG 1 chrV:354704-355338 ( 6) AGACCGGGGTTCGACTCCCCGTATCGGAG 1 chrXVI:435627-436176 ( 42) GGTCCTTAGTTCGATCCTGAGTGCGAGCT 1 chrX:197252-197352 ( 18) GGTCTCCGGTTCGATTCCGGACTCGTCCA 1 chrXVI:856728-857120 ( 72) GGTCTCCGGTTCGATTCCGGACTCGTCCA 1 chrV:130812-131442 ( 5) CAACCCCGGTTCGAATCCGGGTAAGACCT 1 chrXVI:769033-769474 ( 4) TGTCAGGGGTTCGAGCCCCCTATGAGGAG 1 chrVII:115333-115744 ( 67) TGTCAGGGGTTCGAGCCCCCTATGAGGAG 1 chrV:492235-492555 ( 7) GATTCCAGGTTCAAGTCCTGGCGGGGAAG 1 chrXII:374198-374672 ( 14) GATTCCAGGTTCAAGTCCTGGCGGGGAAG 1 chrIV:619702-620212 ( 62) GATTCCAGGTTCAAGTCCTGGCGGGGAAG 1 chrX:374180-374280 ( 33) GATTATGGGTTCGACCCCCATCGTGAGTG 1 chrII:405687-406202 ( 27) GATTATGGGTTCGACCCCCATCGTGAGTG 1 chrX:355195-355295 ( 10) GATTATGGGTTCGACCCCCATCGTGAGTG 1 chrXII:167691-168248 ( 25) CCGCGCAGGTTCGAGTCCTGCAGTTGTCG 1 chrXIII:259015-259377 ( 12) CCGCGCAGGTTCGAGTCCTGCAGTTGTCG 1 chrII:266203-266675 ( 33) GATCATCGGTTCAAATCCGATTGGAAGCA 1 chrXVI:744099-744514 ( 71) GGTCGTTAGTTCAATTCTGACAGGTGGCA 1 chrII:9370-9946 ( 30) CCGCGCGAGTTCGAACCTCGCATCCTTCA 1 chrXIV:725909-726336 ( 62) CCGCGCGAGTTCGAACCTCGCATCCTTCA 1 chrIV:519659-519906 ( 66) CCGCGCGAGTTCGAACCTCGCATCCTTCA 1 chrXII:426891-427476 ( 42) AGATCGGGGTTCAATTCCCCGTCGCGGAG 1 chrII:347414-347921 ( 41) CCGCGCGAGTTCGAACCTCGCATCCTTCA 1 chrX:415723-415823 ( 6) GGTTGCAGGTTCAATTCCTGTCCGTTTCA 1 chrVII:287121-287674 ( 3) GGTTGCAGGTTCAATTCCTGTCCGTTTCA 1 chrIV:1095170-1095655 ( 8) GGTCCTGTGTTCGATCCACAGAGTTCGCA 1 chrIII:227775-228288 ( 33) CCGCGCTGGTTCAAATCCTGCTGGTGTCG 1 chrXVI:689395-689875 ( 33) CCGCGCTGGTTCAAATCCTGCTGGTGTCG 1 chrVI:210431-210895 ( 6) GATCGGGCGTTCGACTCGCCCCCGGGAGA 1 chrIV:946147-946599 ( 49) GATCGGGCGTTCGACTCGCCCCCGGGAGA 1 chrVIII:62530-63052 ( 57) AAACCCTGGTTCGATTCTAGGAGATGGCA 1 chrXVI:621981-623147 ( 26) GGTCCTGTGTTCGATCCACAGAATTCGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCVSSGGTTCGAHYCYSSBHKDGRKCR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 11.0476 E= 8.2e-257 -163 26 175 -343 15 -74 151 -1277 -85 -174 -57 106 -1277 207 -1277 -63 -35 117 65 -343 -285 139 43 -63 -144 58 147 -211 -4 -274 175 -343 -1277 -1277 239 -1277 -1277 -1277 -1277 169 -1277 -1277 -1277 169 -1277 239 -1277 -1277 -53 -1277 204 -1277 169 -1277 -1277 -1277 -63 17 -4 37 -1277 139 -1277 69 -1277 239 -1277 -1277 -343 165 -274 15 -443 147 72 -111 -74 65 143 -1277 -343 51 117 -19 2 107 -1277 -11 -144 -28 121 -11 -53 -28 102 -35 -144 -28 162 -111 2 -42 112 -127 -163 -28 112 9 -85 199 -274 -285 77 -374 85 -144 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCVSSGGTTCGAHYCYSSBHKDGRKCR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 70 E= 8.2e-257 0.100000 0.228571 0.642857 0.028571 0.342857 0.114286 0.542857 0.000000 0.171429 0.057143 0.128571 0.642857 0.000000 0.800000 0.000000 0.200000 0.242857 0.428571 0.300000 0.028571 0.042857 0.500000 0.257143 0.200000 0.114286 0.285714 0.528571 0.071429 0.300000 0.028571 0.642857 0.028571 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.214286 0.000000 0.785714 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.214286 0.185714 0.400000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.028571 0.600000 0.028571 0.342857 0.014286 0.528571 0.314286 0.142857 0.185714 0.300000 0.514286 0.000000 0.028571 0.271429 0.428571 0.271429 0.314286 0.400000 0.000000 0.285714 0.114286 0.157143 0.442857 0.285714 0.214286 0.157143 0.385714 0.242857 0.114286 0.157143 0.585714 0.142857 0.314286 0.142857 0.414286 0.128571 0.100000 0.157143 0.414286 0.328571 0.171429 0.757143 0.028571 0.042857 0.528571 0.014286 0.342857 0.114286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTCVSSGGTTCGAHYCYSSBHKDGRKCR MEME-1 regular expression -------------------------------------------------------------------------------- [GC][GA]T[CT][CGA][CGT][GC][GA]GTTC[GA]A[TCA][CT]C[CT][CG][GC][GCT][CAT][GT][GTA]G[GA][GT]C[AG] -------------------------------------------------------------------------------- Time 351.40 secs. ******************************************************************************** ******************************************************************************** MOTIF RDTKGKTARSGCGYCWGRCTNWWAATSWG MEME-2 width = 29 sites = 51 llr = 796 E-value = 1.4e-091 ******************************************************************************** -------------------------------------------------------------------------------- Motif RDTKGKTARSGCGYCWGRCTNWWAATSWG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 53:1::1a421:3:25:5::443971142 pos.-specific C ::21:11:13:a:461218:212:22511 probability G 3325951:459:711173::2211:2315 matrix T 2463147:2::::513112a235:15132 bits 2.4 * 2.2 * 1.9 ** 1.7 * * ** * Relative 1.4 * * *** ** Entropy 1.2 * * *** * ** * (22.5 bits) 1.0 * * *** * ** * 0.7 ** * **** * * ** ** * 0.5 ****** ****** **** ** * * 0.2 *************** **** ***** * 0.0 ----------------------------- Multilevel ATTGGGTAAGGCGTCAGACTAATAATCAG consensus GAGT T GC ACATCGT GTA CGT sequence G A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDTKGKTARSGCGYCWGRCTNWWAATSWG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrIX:174894-175202 + 46 3.59e-12 TCTATGGCCA AGTTGGTAAGGCGCCACACTAGTAATGTG GAGATCATCG chrII:266203-266675 + 2 3.59e-12 A AGTTGGTAAGGCGCCACACTAGTAATGTG GAGATCATCG chrXV:353916-354305 - 12 3.59e-12 TCTATGGCCA AGTTGGTAAGGCGCCACACTAGTAATGTG GAGATCATCG chrXVI:581854-582320 + 38 3.12e-10 TTGTTGGCGC AATCGGTAGCGCGTATGACTCTTAATCAT AAGGTTAGGG chrV:435620-435997 - 25 3.12e-10 TTGTTGGCGC AATCGGTAGCGCGTATGACTCTTAATCAT AAGGTTAGGG chrIII:151127-151572 - 16 3.12e-10 TTGTTGGCGC AATCGGTAGCGCGTATGACTCTTAATCAT AAGGTTAGGG chrIV:1201557-1202017 + 26 3.12e-10 TTGTTGGCGC AATCGGTAGCGCGTATGACTCTTAATCAT AAGGTTAGGG chrIII:127583-127877 + 50 4.82e-10 CCATGGCCAA GTTGGTTAAGGCGTGCGACTGTTAATCGC AAGATCGTGA chrXVI:810579-810840 + 31 4.82e-10 CCATGGCCAA GTTGGTTAAGGCGTGCGACTGTTAATCGC AAGATCGTGA chrXIV:632410-632859 + 29 4.82e-10 CCATGGCCAA GTTGGTTAAGGCGTGCGACTGTTAATCGC AAGATCGTGA chrV:492235-492555 - 38 1.43e-09 CTCGTGGCCC AATGGTCACGGCGTCTGGCTACGAACCAG AAGATTCCAG chrXV:340172-340584 - 2 1.43e-09 CTCGTGGCCC AATGGTCACGGCGTCTGGCTACGAACCAG A chrX:233726-233826 + 27 1.43e-09 CTCGTGGCCC AATGGTCACGGCGTCTGGCTACGAACCAG GAGATTCCAG chrXII:1051939-1052221 - 72 3.46e-09 . GTTGGTTAAGGCACCGTGCTAATAACGCG GGGATCAGCG chrII:197266-197835 + 8 3.46e-09 TGGCCCA GTTGGTTAAGGCACCGTGCTAATAACGCG GGGATCAGCG chrV:443056-443380 - 65 3.46e-09 TGGCCCA GTTGGTTAAGGCACCGTGCTAATAACGCG GGGATCAGCG chrXVI:819339-819834 + 7 3.46e-09 GGCCCA GTTGGTTAAGGCACCGTGCTAATAACGCG GGGATCAGCG chrXVI:769033-769474 - 58 6.28e-09 TTGTTAGCTC AGTTGGTAGAGCGTTCGGCTTTTAAGCGC ATTTGCTTAA chrVII:115333-115744 + 13 6.28e-09 TTGTTAGCTC AGTTGGTAGAGCGTTCGGCTTTTAAGCGC ATTTGCTTAA chrX:422649-422749 + 64 7.91e-09 TCAGTAGCTC AGTAGGAAGAGCGTCAGTCTCATAATCTG AAGGTCGA chrIV:1175608-1176107 + 35 7.91e-09 TCAGTAGCTC AGTAGGAAGAGCGTCAGTCTCATAATCTG AAGGTCGAGA chrXV:976286-976622 + 30 7.91e-09 TCAGTAGCTC AGTAGGAAGAGCGTCAGTCTCATAATCTG AAGGTCGAGA chrX:374180-374280 - 64 1.71e-08 GCGTGGCG TAATGGCAACGCGTCTGACTTCTAATCAG AAGATTATGG chrXII:167691-168248 - 65 1.71e-08 TTGGCCG AGTGGTTAAGGCGAAAGATTAGAAATCTT TTGGGCTTTG chrXIII:747768-748129 - 25 1.71e-08 TCGCGTGGCG TAATGGCAACGCGTCTGACTTCTAATCAG AAGATTATGG chrXIII:259015-259377 - 52 1.71e-08 AACTTGGCCG AGTGGTTAAGGCGAAAGATTAGAAATCTT TTGGGCTTTG chrIV:519659-519906 + 25 1.90e-08 GGTTGGCCGA GTGGTCTAAGGCGGCAGACTTAAGATCTG TTGGACGGTT chrX:424291-424391 - 27 1.90e-08 GGTTGGCCGA GTGGTCTAAGGCGGCAGACTTAAGATCTG TTGGACGGTT chrVII:823338-823699 + 28 3.52e-08 TCGTGGTCTA GTCGGTTATGGCATCTGCTTAACACGCAG AACGTCCCCA chrXI:307903-308426 - 61 3.52e-08 TCGTGGTCTA GTCGGTTATGGCATCTGCTTAACACGCAG AACGTCCCCA chrV:438517-439005 + 3 3.52e-08 TA GTCGGTTATGGCATCTGCTTAACACGCAG AACGTCCCCA chrXIII:420316-420880 - 71 3.52e-08 A GTCGGTTATGGCATCTGCTTAACACGCAG AACGTCCCCA chrII:642865-643260 - 26 1.00e-07 TCGTATGGCG CAGTGGTAGCGCAGCAGATTGCAAATCTG TTGGTCCTTA chrIV:1095170-1095655 - 58 1.55e-07 GACTTAGCTC AGTTGGGAGAGCGCCAGACTGAAGAAAAA ACTTTGGTCA chrVIII:237762-238128 - 3 1.55e-07 GATTTAGCTC AGTTGGGAGAGCGCCAGACTGAAGAAAAA AC chrVII:440547-441029 - 28 1.55e-07 GATTTAGCTC AGTTGGGAGAGCGCCAGACTGAAGAAAAA ACTTCGGTCA chrII:36242-36559 + 61 1.55e-07 GATTTAGCTC AGTTGGGAGAGCGCCAGACTGAAGAAAAA CTTCGGTCAA chrIII:149729-150187 + 24 1.69e-07 CGCCGTGGCG CAGTGGAAGCGCGCAGGGCTCATAACCCT GATGTCCTCG chrXVI:744099-744514 + 40 2.01e-07 CTCCTTAGCT TAGTGGTAGAGCGTTGCACTTGTAATGCA AAGGTCGTTA chrVII:1003999-1004430 + 64 2.01e-07 CTCCTTAGCT TAGTGGTAGAGCGTTGCACTTGTAATGCA AAGGTCGT chrVI:210431-210895 - 51 3.02e-07 GGTAGCCAAG TTGGTTTAAGGCGCAAGACTGTAATTTAC CACTACGAAA chrX:354026-354126 + 62 3.02e-07 GGTAGCCAAG TTGGTTTAAGGCGCAAGACTGTAATTTAC CACTACGAAA chrXV:288052-288395 + 34 3.27e-07 GGTAGCCAAG TTGGTTTAAGGCGCAAGACTGTAATTTAT CACTACGAAA chrIV:946147-946599 + 4 3.27e-07 AAG TTGGTTTAAGGCGCAAGACTGTAATTTAT CACTACGAAA chrX:617697-617797 + 8 5.19e-07 TGGCCGA GTGGTTTAAGGCGTCAGATTTAGGTGGAT TTAACCTCTA chrXI:140595-141459 - 71 5.59e-07 T AACGGCTATCACATCACGCTTTCACCGTG GAGACCGGGG chrXVI:210034-210492 - 9 5.59e-07 GATATAGTGT AACGGCTATCACATCACGCTTTCACCGTG GAGACCGG chrV:176883-177413 + 14 5.59e-07 GATATAGTGT AACGGCTATCACATCACGCTTTCACCGTG GAGACCGGGG chrX:197252-197352 - 49 1.30e-06 CGTGTGGCGT AGTCGGTAGCGCGCTCCCTTAGCATGGGA GAGGTCTCCG chrXVI:856728-857120 + 41 1.30e-06 CGTGTGGCGT AGTCGGTAGCGCGCTCCCTTAGCATGGGA GAGGTCTCCG chrIV:1016977-1017478 - 60 1.68e-06 GATGTAGTGT AACGGCTATCACATCACGTTCTCACCGTG GAGACCGGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDTKGKTARSGCGYCWGRCTNWWAATSWG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIX:174894-175202 3.6e-12 45_[+2]_26 chrII:266203-266675 3.6e-12 1_[+2]_70 chrXV:353916-354305 3.6e-12 11_[-2]_60 chrXVI:581854-582320 3.1e-10 37_[+2]_34 chrV:435620-435997 3.1e-10 24_[-2]_47 chrIII:151127-151572 3.1e-10 15_[-2]_56 chrIV:1201557-1202017 3.1e-10 25_[+2]_46 chrIII:127583-127877 4.8e-10 49_[+2]_22 chrXVI:810579-810840 4.8e-10 30_[+2]_41 chrXIV:632410-632859 4.8e-10 28_[+2]_43 chrV:492235-492555 1.4e-09 37_[-2]_34 chrXV:340172-340584 1.4e-09 1_[-2]_70 chrX:233726-233826 1.4e-09 26_[+2]_45 chrXII:1051939-1052221 3.5e-09 71_[-2] chrII:197266-197835 3.5e-09 7_[+2]_64 chrV:443056-443380 3.5e-09 64_[-2]_7 chrXVI:819339-819834 3.5e-09 6_[+2]_65 chrXVI:769033-769474 6.3e-09 57_[-2]_14 chrVII:115333-115744 6.3e-09 12_[+2]_59 chrX:422649-422749 7.9e-09 63_[+2]_8 chrIV:1175608-1176107 7.9e-09 34_[+2]_37 chrXV:976286-976622 7.9e-09 29_[+2]_42 chrX:374180-374280 1.7e-08 63_[-2]_8 chrXII:167691-168248 1.7e-08 64_[-2]_7 chrXIII:747768-748129 1.7e-08 24_[-2]_47 chrXIII:259015-259377 1.7e-08 51_[-2]_20 chrIV:519659-519906 1.9e-08 24_[+2]_47 chrX:424291-424391 1.9e-08 26_[-2]_45 chrVII:823338-823699 3.5e-08 27_[+2]_44 chrXI:307903-308426 3.5e-08 60_[-2]_11 chrV:438517-439005 3.5e-08 2_[+2]_69 chrXIII:420316-420880 3.5e-08 70_[-2]_1 chrII:642865-643260 1e-07 25_[-2]_46 chrIV:1095170-1095655 1.6e-07 57_[-2]_14 chrVIII:237762-238128 1.6e-07 2_[-2]_69 chrVII:440547-441029 1.6e-07 27_[-2]_44 chrII:36242-36559 1.6e-07 60_[+2]_11 chrIII:149729-150187 1.7e-07 23_[+2]_48 chrXVI:744099-744514 2e-07 39_[+2]_32 chrVII:1003999-1004430 2e-07 63_[+2]_8 chrVI:210431-210895 3e-07 50_[-2]_21 chrX:354026-354126 3e-07 61_[+2]_10 chrXV:288052-288395 3.3e-07 33_[+2]_38 chrIV:946147-946599 3.3e-07 3_[+2]_68 chrX:617697-617797 5.2e-07 7_[+2]_64 chrXI:140595-141459 5.6e-07 70_[-2]_1 chrXVI:210034-210492 5.6e-07 8_[-2]_63 chrV:176883-177413 5.6e-07 13_[+2]_58 chrX:197252-197352 1.3e-06 48_[-2]_23 chrXVI:856728-857120 1.3e-06 40_[+2]_31 chrIV:1016977-1017478 1.7e-06 59_[-2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDTKGKTARSGCGYCWGRCTNWWAATSWG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RDTKGKTARSGCGYCWGRCTNWWAATSWG width=29 seqs=51 chrIX:174894-175202 ( 46) AGTTGGTAAGGCGCCACACTAGTAATGTG 1 chrII:266203-266675 ( 2) AGTTGGTAAGGCGCCACACTAGTAATGTG 1 chrXV:353916-354305 ( 12) AGTTGGTAAGGCGCCACACTAGTAATGTG 1 chrXVI:581854-582320 ( 38) AATCGGTAGCGCGTATGACTCTTAATCAT 1 chrV:435620-435997 ( 25) AATCGGTAGCGCGTATGACTCTTAATCAT 1 chrIII:151127-151572 ( 16) AATCGGTAGCGCGTATGACTCTTAATCAT 1 chrIV:1201557-1202017 ( 26) AATCGGTAGCGCGTATGACTCTTAATCAT 1 chrIII:127583-127877 ( 50) GTTGGTTAAGGCGTGCGACTGTTAATCGC 1 chrXVI:810579-810840 ( 31) GTTGGTTAAGGCGTGCGACTGTTAATCGC 1 chrXIV:632410-632859 ( 29) GTTGGTTAAGGCGTGCGACTGTTAATCGC 1 chrV:492235-492555 ( 38) AATGGTCACGGCGTCTGGCTACGAACCAG 1 chrXV:340172-340584 ( 2) AATGGTCACGGCGTCTGGCTACGAACCAG 1 chrX:233726-233826 ( 27) AATGGTCACGGCGTCTGGCTACGAACCAG 1 chrXII:1051939-1052221 ( 72) GTTGGTTAAGGCACCGTGCTAATAACGCG 1 chrII:197266-197835 ( 8) GTTGGTTAAGGCACCGTGCTAATAACGCG 1 chrV:443056-443380 ( 65) GTTGGTTAAGGCACCGTGCTAATAACGCG 1 chrXVI:819339-819834 ( 7) GTTGGTTAAGGCACCGTGCTAATAACGCG 1 chrXVI:769033-769474 ( 58) AGTTGGTAGAGCGTTCGGCTTTTAAGCGC 1 chrVII:115333-115744 ( 13) AGTTGGTAGAGCGTTCGGCTTTTAAGCGC 1 chrX:422649-422749 ( 64) AGTAGGAAGAGCGTCAGTCTCATAATCTG 1 chrIV:1175608-1176107 ( 35) AGTAGGAAGAGCGTCAGTCTCATAATCTG 1 chrXV:976286-976622 ( 30) AGTAGGAAGAGCGTCAGTCTCATAATCTG 1 chrX:374180-374280 ( 64) TAATGGCAACGCGTCTGACTTCTAATCAG 1 chrXII:167691-168248 ( 65) AGTGGTTAAGGCGAAAGATTAGAAATCTT 1 chrXIII:747768-748129 ( 25) TAATGGCAACGCGTCTGACTTCTAATCAG 1 chrXIII:259015-259377 ( 52) AGTGGTTAAGGCGAAAGATTAGAAATCTT 1 chrIV:519659-519906 ( 25) GTGGTCTAAGGCGGCAGACTTAAGATCTG 1 chrX:424291-424391 ( 27) GTGGTCTAAGGCGGCAGACTTAAGATCTG 1 chrVII:823338-823699 ( 28) GTCGGTTATGGCATCTGCTTAACACGCAG 1 chrXI:307903-308426 ( 61) GTCGGTTATGGCATCTGCTTAACACGCAG 1 chrV:438517-439005 ( 3) GTCGGTTATGGCATCTGCTTAACACGCAG 1 chrXIII:420316-420880 ( 71) GTCGGTTATGGCATCTGCTTAACACGCAG 1 chrII:642865-643260 ( 26) CAGTGGTAGCGCAGCAGATTGCAAATCTG 1 chrIV:1095170-1095655 ( 58) AGTTGGGAGAGCGCCAGACTGAAGAAAAA 1 chrVIII:237762-238128 ( 3) AGTTGGGAGAGCGCCAGACTGAAGAAAAA 1 chrVII:440547-441029 ( 28) AGTTGGGAGAGCGCCAGACTGAAGAAAAA 1 chrII:36242-36559 ( 61) AGTTGGGAGAGCGCCAGACTGAAGAAAAA 1 chrIII:149729-150187 ( 24) CAGTGGAAGCGCGCAGGGCTCATAACCCT 1 chrXVI:744099-744514 ( 40) TAGTGGTAGAGCGTTGCACTTGTAATGCA 1 chrVII:1003999-1004430 ( 64) TAGTGGTAGAGCGTTGCACTTGTAATGCA 1 chrVI:210431-210895 ( 51) TTGGTTTAAGGCGCAAGACTGTAATTTAC 1 chrX:354026-354126 ( 62) TTGGTTTAAGGCGCAAGACTGTAATTTAC 1 chrXV:288052-288395 ( 34) TTGGTTTAAGGCGCAAGACTGTAATTTAT 1 chrIV:946147-946599 ( 4) TTGGTTTAAGGCGCAAGACTGTAATTTAT 1 chrX:617697-617797 ( 8) GTGGTTTAAGGCGTCAGATTTAGGTGGAT 1 chrXI:140595-141459 ( 71) AACGGCTATCACATCACGCTTTCACCGTG 1 chrXVI:210034-210492 ( 9) AACGGCTATCACATCACGCTTTCACCGTG 1 chrV:176883-177413 ( 14) AACGGCTATCACATCACGCTTTCACCGTG 1 chrX:197252-197352 ( 49) AGTCGGTAGCGCGCTCCCTTAGCATGGGA 1 chrXVI:856728-857120 ( 41) AGTCGGTAGCGCGCTCCCTTAGCATGGGA 1 chrIV:1016977-1017478 ( 60) AACGGCTATCACATCACGTTCTCACCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDTKGKTARSGCGYCWGRCTNWWAATSWG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 9.45652 E= 1.4e-091 78 -228 52 -98 11 -1232 72 19 -298 -28 18 93 -239 -70 147 -7 -1232 -1232 218 -117 -1232 -70 130 41 -198 -96 -128 127 169 -1232 -1232 -1232 41 -170 97 -98 -52 52 142 -1232 -198 -1232 227 -1232 -1232 239 -1232 -1232 -28 -1232 197 -1232 -298 89 -170 83 -52 167 -170 -139 61 -48 -48 -28 -1232 18 189 -198 83 -70 52 -239 -1232 204 -1232 -52 -1232 -1232 -1232 169 19 -11 30 -39 27 -70 -11 11 -28 4 -128 61 148 -1232 -48 -1232 119 -28 -1232 -117 -198 30 -11 72 -198 147 72 -198 48 -48 -48 -7 -98 -48 142 -66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDTKGKTARSGCGYCWGRCTNWWAATSWG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 51 E= 1.4e-091 0.529412 0.039216 0.274510 0.156863 0.333333 0.000000 0.313725 0.352941 0.039216 0.156863 0.215686 0.588235 0.058824 0.117647 0.529412 0.294118 0.000000 0.000000 0.862745 0.137255 0.000000 0.117647 0.470588 0.411765 0.078431 0.098039 0.078431 0.745098 1.000000 0.000000 0.000000 0.000000 0.411765 0.058824 0.372549 0.156863 0.215686 0.274510 0.509804 0.000000 0.078431 0.000000 0.921569 0.000000 0.000000 1.000000 0.000000 0.000000 0.254902 0.000000 0.745098 0.000000 0.039216 0.352941 0.058824 0.549020 0.215686 0.607843 0.058824 0.117647 0.470588 0.137255 0.137255 0.254902 0.000000 0.215686 0.705882 0.078431 0.549020 0.117647 0.274510 0.058824 0.000000 0.784314 0.000000 0.215686 0.000000 0.000000 0.000000 1.000000 0.352941 0.176471 0.235294 0.235294 0.372549 0.117647 0.176471 0.333333 0.254902 0.196078 0.078431 0.470588 0.862745 0.000000 0.137255 0.000000 0.705882 0.156863 0.000000 0.137255 0.078431 0.235294 0.176471 0.509804 0.078431 0.529412 0.313725 0.078431 0.431373 0.137255 0.137255 0.294118 0.156863 0.137255 0.509804 0.196078 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDTKGKTARSGCGYCWGRCTNWWAATSWG MEME-2 regular expression -------------------------------------------------------------------------------- [AG][TAG][TG][GT]G[GT]TA[AG][GCA]GC[GA][TC][CA][AT][GC][AG][CT]T[AGT][AT][TA]AA[TC][CG][AT]G -------------------------------------------------------------------------------- Time 672.56 secs. ******************************************************************************** ******************************************************************************** MOTIF DAAAAAAAAAAAWAA MEME-3 width = 15 sites = 76 llr = 783 E-value = 2.4e-031 ******************************************************************************** -------------------------------------------------------------------------------- Motif DAAAAAAAAAAAWAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 367a858a99985aa pos.-specific C :21::11::1::::: probability G 432:22::::112:: matrix T 3::::2::11:13:: bits 2.4 2.2 1.9 1.7 * * Relative 1.4 * * * ** Entropy 1.2 ** **** ** (14.9 bits) 1.0 ** ***** ** 0.7 **** ****** ** 0.5 **** ****** ** 0.2 *************** 0.0 --------------- Multilevel GAAAAAAAAAAAAAA consensus TG T sequence A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DAAAAAAAAAAAWAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrVIII:214166-214320 - 66 1.31e-07 AGATTTCGAA TAAAAAAAAAAAAAA AAGCTATTCA chrV:61102-62212 - 80 2.31e-07 ATCATC AAAAAAAAAAAAAAA GAGGAGTGAT chrIV:1016977-1017478 + 14 2.70e-07 AATTTTTCTA GAAAATAAAAAAGAA ACTCCGAAGC chrXIII:652070-652932 - 83 2.70e-07 AAT TGAAAAAAAAAAAAA GGTATGTGCG chrXVI:188542-189269 - 80 2.70e-07 AAAGAA GAAAAAAAAAAGAAA AAAAAAGAGA chrIV:644781-645369 + 76 2.70e-07 ACACATTCTC TGAAAAAAAAAAAAA GTAACTGATG chrVII:706926-707179 + 41 3.20e-07 ATGAGGCCCA AAAAAAAAAAAAGAA CATCTTCAAA chrII:44898-45326 - 11 4.07e-07 GACGTGGAAG GAAAAAAAAAAGGAA AGCCCAACAA chrVII:857110-857591 + 4 4.57e-07 AAT GGAAAAAAAAAGAAA TAAAGGTGGG chrVIII:160215-160990 + 82 5.48e-07 TATCTATTTC GAAAATAAAAAATAA GTGA chrXIV:214214-215319 + 70 5.48e-07 AAAATATTGA AAAAAGAAAAAAAAA TAAGATCCAG chrXIII:99006-99495 + 73 6.60e-07 TAAAGAGAAA TCAAAAAAAAAAAAA TTTTGCGTTG chrXIII:362935-363384 - 27 9.21e-07 TCTTTTCTTT GAAAAAAAAAGAAAA TGCCATCTCC chrXV:464288-464956 - 24 9.21e-07 AAAGGGCCTT GAAAAAAATAAAAAA TATCTGTTAC chrXI:84007-84675 - 7 9.21e-07 AACACAAAAA TAAAATAAAAAAAAA AATTAC chrXII:592105-592906 + 49 9.21e-07 AAAGATGGCA AAAAACAAAAAAAAA TGAGAGCTAA chrIV:1450193-1451824 + 69 1.05e-06 ACGGAGTGCT TAAAGAAAAAAAAAA GTGATATAGA chrXIV:56607-58684 + 11 1.41e-06 GGGGGTTTCG GAAAATAAAAAGAAA ATTGAAAGAT chrI:180957-181504 - 75 1.41e-06 GTATAGGAGG AAAAAGAAAAAATAA TGGTTGCTAA chrXII:167691-168248 + 10 1.41e-06 AAAAAAAAG AAAAAGAAAAAATAA CGACAACTGC chrX:390818-390918 + 4 1.80e-06 AAA ACAAAGAAAAAAAAA ACAAAATAGA chrXV:593978-594677 + 22 2.08e-06 ATAATTGAAA TGGAAAAAAAAATAA CAAAACGTCT chrXIV:569513-570167 + 62 2.08e-06 ACATTGCCAA TGCAAAAAAAAAGAA TGGTCTCTAG chrVII:510761-511099 - 1 2.31e-06 ACCCTAGCAA GAAAAGAAAAGAGAA chrXV:70222-70587 + 54 2.58e-06 GTGCGCCAGT GGAAACCAAAAAGAA GAGATTTGAA chrIV:1116448-1117234 + 56 2.58e-06 CAAGAGGAAT AACAAGAAAAAAAAA TCATGGGGGA chrIV:410178-410778 - 26 2.58e-06 CGGCACCGCG GAAAGTAAAAAATAA TTTGGACGAG chrX:197252-197352 + 2 2.58e-06 T GAGAACAAAAAGAAA TTGGACGAGT chrXIV:718793-719092 + 69 2.58e-06 AGTAACAGTG GACAGGAAAAAAAAA CGGTACGAAA chrII:644640-645899 - 20 2.94e-06 ATAATGGTAT AGAAACAAAAAATAA CTCCGATACG chrII:477048-477774 + 9 2.94e-06 CAGAAGCC TCAAGAAAAAAAAAA TTCTTCTTCG chrVII:648760-649391 + 81 2.94e-06 AAGAAGGCGA TGAAAACAAAAAGAA TATTA chrVI:233876-234201 - 83 3.23e-06 AAT GAAAATAATAAAAAA AGAGGAGGAA chrXV:571739-572128 - 9 4.07e-06 TCATATGATT TGAAAAAATAAAAAA ATGTTGCA chrIV:667724-668210 + 75 5.02e-06 AACAATAGAG GAGAAAAAATAAAAA TGGTCTCTAG chrXI:38713-39548 + 32 5.52e-06 CTGGATATAA GCAAACAAAAAGTAA GATTAGTAGC chrXVI:860131-860722 - 78 6.10e-06 CTTTAGAA GGGAGCAAAAAATAA AATCTGCGCA chrVII:554898-555902 - 50 6.80e-06 TAACAACTAG GGAAACAAACAAGAA AAATTTATAA chrXIV:725909-726336 + 44 8.23e-06 GTGGCCCCGA CAAAATAAAAAAAAA TACTGAAGGA chrXII:214623-215067 + 72 8.23e-06 AAAGGAGAAT AAAAGTAAAAAATAA ATGGACGCAA chrX:157479-157579 - 82 9.03e-06 CTTG AAAAACCAAAAATAA TGCAACAAGT chrVI:226471-227169 - 59 9.03e-06 AGGACAAAGA GACAGGAAAAAGAAA AAATTATGGT chrX:607892-607992 - 73 9.90e-06 CAACATCTGA TAAAAAAAAAATTAA AAAACAATAA chrX:531589-531689 - 50 1.09e-05 TTTCTTATTT TCCAGAAAAAAAGAA AAGAAACTGC chrVII:531365-531796 - 7 1.19e-05 ATACTTGCGG AACAAACAAAAATAA TTACAT chrIV:358007-358493 - 75 1.19e-05 ATCTGCCAAG TAAAAAAAAAAATAC CTTGGTGTAC chrV:435620-435997 - 69 1.29e-05 ATAAGAATCA GAAAAACAACAATAA GAGCCTTGTT chrIV:1400894-1403394 - 24 1.29e-05 AATGATATTT TGAAATAAAAGAGAA GTGGATTTAG chrIV:1149701-1149858 + 74 1.29e-05 AAATGGTCTT GAAAAGAAATAGAAA TATCCTTAGG chrXII:522167-522416 + 15 1.43e-05 CGTTTTCATA TCAAAAAAAAAAAAC CATATTAACA chrXI:434724-435458 + 82 1.43e-05 AACTGAAAAA AGGAAAAAACAAAAA TGAG chrIV:56186-56764 + 13 1.55e-05 TGAAAAATGC TCGAAAAATAAAGAA AGAAGTCAGT chrIV:1087489-1087792 + 4 1.68e-05 GAA GGCAGAAAAAGAGAA CGCATGCGCA chrXIII:320908-321323 + 67 1.84e-05 GTTAGTTAGC CAAAAAAATAAAAAA TGGACGAGTC chrVII:736203-736815 - 11 1.84e-05 TAATACCTCT TAGAAAAATAAGAAA TATCTTCGTT chrXIV:722309-722842 - 13 1.84e-05 TGGGGAACCA GGAAGACAAAGAAAA TGGGTGGACC chrV:322117-322819 + 22 1.84e-05 TCTACCACGA GAAAAAAATTAAGAA AATGCAACGC chrVII:533825-535193 + 21 1.98e-05 TGTTCTATGA TAAAGTAAAAAGTAA AAACATACTT chrXV:616170-617729 - 80 1.98e-05 AAAGTG GCGAACAAACAAGAA GTGAGTTGTA chrX:73371-73471 - 21 1.98e-05 GCTTCAAAGT TGCAAAAAAAATAAA ATTCCAATAA chrXII:975713-976177 + 73 1.98e-05 AATAATTTAA TGCAAAAAAAATAAA CGACCCCAGT chrXII:1027386-1028538 - 79 1.98e-05 ATATACT GCAAAAACAAAAGAA CAATTGACCT chrV:207363-207541 - 30 1.98e-05 TGTATATTAA GAATATAAAAAATAA ATATGCCATC chrIV:1256776-1257284 + 1 2.16e-05 . GAGTATAAAAAAAAA TTGCACAAAA chrVII:310344-312519 - 56 2.33e-05 GGACATTTTA TCGAAACAAAAGAAA CGTGGTAACT chrXII:48712-49219 + 19 2.52e-05 ATGGAAAACA GGCAAGTAAAAAGAA TAGTAATTAT chrX:422649-422749 - 21 2.52e-05 AAGGATGTTG GGGAAGAAAAACAAA CTTTACATCC chrXV:307842-308134 + 82 2.52e-05 ACATTATCAG GGAAACCAATAAAAA TTGA chrXV:663359-664115 - 22 2.94e-05 GCATTCAACA GAGAAAAATAATGAA AAAAAAAGTT chrXI:513000-513592 + 67 3.41e-05 CAGGAGGAAT AAAAAGCAAAATAAA AAATCTCCGC chrXII:1051939-1052221 + 26 3.65e-05 TATTTACTTA AAGTAAAAAAAATAA TGGTCTCTAG chrXVI:888326-889173 - 35 3.65e-05 TTTAGACCCA ACAAAGTAAAAAGAA GGTTGGGTTG chrII:603906-607120 + 35 3.65e-05 GAAGCCGAAG ACGAAGAATAAATAA TTCGCTGATT chrVIII:466834-467356 - 25 4.48e-05 AGAACAAAGG GAAAAAAAATAATAC CGGTATAATG chrXI:74407-75009 - 41 7.90e-05 TTCAGTGTAA AAAAGTTAAAAATAA GCGACCCCAG chrXI:451855-452583 + 6 9.94e-05 AACCA AAGAATAATAGATAA AGTACACAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DAAAAAAAAAAAWAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVIII:214166-214320 1.3e-07 65_[-3]_20 chrV:61102-62212 2.3e-07 79_[-3]_6 chrIV:1016977-1017478 2.7e-07 13_[+3]_72 chrXIII:652070-652932 2.7e-07 82_[-3]_3 chrXVI:188542-189269 2.7e-07 79_[-3]_6 chrIV:644781-645369 2.7e-07 75_[+3]_10 chrVII:706926-707179 3.2e-07 40_[+3]_45 chrII:44898-45326 4.1e-07 10_[-3]_75 chrVII:857110-857591 4.6e-07 3_[+3]_82 chrVIII:160215-160990 5.5e-07 81_[+3]_4 chrXIV:214214-215319 5.5e-07 69_[+3]_16 chrXIII:99006-99495 6.6e-07 72_[+3]_13 chrXIII:362935-363384 9.2e-07 26_[-3]_59 chrXV:464288-464956 9.2e-07 23_[-3]_62 chrXI:84007-84675 9.2e-07 6_[-3]_79 chrXII:592105-592906 9.2e-07 48_[+3]_37 chrIV:1450193-1451824 1e-06 68_[+3]_17 chrXIV:56607-58684 1.4e-06 10_[+3]_75 chrI:180957-181504 1.4e-06 74_[-3]_11 chrXII:167691-168248 1.4e-06 9_[+3]_76 chrX:390818-390918 1.8e-06 3_[+3]_82 chrXV:593978-594677 2.1e-06 21_[+3]_64 chrXIV:569513-570167 2.1e-06 61_[+3]_24 chrVII:510761-511099 2.3e-06 [-3]_85 chrXV:70222-70587 2.6e-06 53_[+3]_32 chrIV:1116448-1117234 2.6e-06 55_[+3]_30 chrIV:410178-410778 2.6e-06 25_[-3]_60 chrX:197252-197352 2.6e-06 1_[+3]_84 chrXIV:718793-719092 2.6e-06 68_[+3]_17 chrII:644640-645899 2.9e-06 19_[-3]_66 chrII:477048-477774 2.9e-06 8_[+3]_77 chrVII:648760-649391 2.9e-06 80_[+3]_5 chrVI:233876-234201 3.2e-06 82_[-3]_3 chrXV:571739-572128 4.1e-06 8_[-3]_77 chrIV:667724-668210 5e-06 74_[+3]_11 chrXI:38713-39548 5.5e-06 31_[+3]_54 chrXVI:860131-860722 6.1e-06 77_[-3]_8 chrVII:554898-555902 6.8e-06 49_[-3]_36 chrXIV:725909-726336 8.2e-06 43_[+3]_42 chrXII:214623-215067 8.2e-06 71_[+3]_14 chrX:157479-157579 9e-06 81_[-3]_4 chrVI:226471-227169 9e-06 58_[-3]_27 chrX:607892-607992 9.9e-06 72_[-3]_13 chrX:531589-531689 1.1e-05 49_[-3]_36 chrVII:531365-531796 1.2e-05 6_[-3]_79 chrIV:358007-358493 1.2e-05 74_[-3]_11 chrV:435620-435997 1.3e-05 68_[-3]_17 chrIV:1400894-1403394 1.3e-05 23_[-3]_62 chrIV:1149701-1149858 1.3e-05 73_[+3]_12 chrXII:522167-522416 1.4e-05 14_[+3]_71 chrXI:434724-435458 1.4e-05 81_[+3]_4 chrIV:56186-56764 1.5e-05 12_[+3]_73 chrIV:1087489-1087792 1.7e-05 3_[+3]_82 chrXIII:320908-321323 1.8e-05 66_[+3]_19 chrVII:736203-736815 1.8e-05 10_[-3]_75 chrXIV:722309-722842 1.8e-05 12_[-3]_73 chrV:322117-322819 1.8e-05 21_[+3]_64 chrVII:533825-535193 2e-05 20_[+3]_65 chrXV:616170-617729 2e-05 79_[-3]_6 chrX:73371-73471 2e-05 20_[-3]_65 chrXII:975713-976177 2e-05 72_[+3]_13 chrXII:1027386-1028538 2e-05 78_[-3]_7 chrV:207363-207541 2e-05 29_[-3]_56 chrIV:1256776-1257284 2.2e-05 [+3]_85 chrVII:310344-312519 2.3e-05 55_[-3]_30 chrXII:48712-49219 2.5e-05 18_[+3]_67 chrX:422649-422749 2.5e-05 20_[-3]_65 chrXV:307842-308134 2.5e-05 81_[+3]_4 chrXV:663359-664115 2.9e-05 21_[-3]_64 chrXI:513000-513592 3.4e-05 66_[+3]_19 chrXII:1051939-1052221 3.6e-05 25_[+3]_60 chrXVI:888326-889173 3.6e-05 34_[-3]_51 chrII:603906-607120 3.6e-05 34_[+3]_51 chrVIII:466834-467356 4.5e-05 24_[-3]_61 chrXI:74407-75009 7.9e-05 40_[-3]_45 chrXI:451855-452583 9.9e-05 5_[+3]_80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DAAAAAAAAAAAWAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DAAAAAAAAAAAWAA width=15 seqs=76 chrVIII:214166-214320 ( 66) TAAAAAAAAAAAAAA 1 chrV:61102-62212 ( 80) AAAAAAAAAAAAAAA 1 chrIV:1016977-1017478 ( 14) GAAAATAAAAAAGAA 1 chrXIII:652070-652932 ( 83) TGAAAAAAAAAAAAA 1 chrXVI:188542-189269 ( 80) GAAAAAAAAAAGAAA 1 chrIV:644781-645369 ( 76) TGAAAAAAAAAAAAA 1 chrVII:706926-707179 ( 41) AAAAAAAAAAAAGAA 1 chrII:44898-45326 ( 11) GAAAAAAAAAAGGAA 1 chrVII:857110-857591 ( 4) GGAAAAAAAAAGAAA 1 chrVIII:160215-160990 ( 82) GAAAATAAAAAATAA 1 chrXIV:214214-215319 ( 70) AAAAAGAAAAAAAAA 1 chrXIII:99006-99495 ( 73) TCAAAAAAAAAAAAA 1 chrXIII:362935-363384 ( 27) GAAAAAAAAAGAAAA 1 chrXV:464288-464956 ( 24) GAAAAAAATAAAAAA 1 chrXI:84007-84675 ( 7) TAAAATAAAAAAAAA 1 chrXII:592105-592906 ( 49) AAAAACAAAAAAAAA 1 chrIV:1450193-1451824 ( 69) TAAAGAAAAAAAAAA 1 chrXIV:56607-58684 ( 11) GAAAATAAAAAGAAA 1 chrI:180957-181504 ( 75) AAAAAGAAAAAATAA 1 chrXII:167691-168248 ( 10) AAAAAGAAAAAATAA 1 chrX:390818-390918 ( 4) ACAAAGAAAAAAAAA 1 chrXV:593978-594677 ( 22) TGGAAAAAAAAATAA 1 chrXIV:569513-570167 ( 62) TGCAAAAAAAAAGAA 1 chrVII:510761-511099 ( 1) GAAAAGAAAAGAGAA 1 chrXV:70222-70587 ( 54) GGAAACCAAAAAGAA 1 chrIV:1116448-1117234 ( 56) AACAAGAAAAAAAAA 1 chrIV:410178-410778 ( 26) GAAAGTAAAAAATAA 1 chrX:197252-197352 ( 2) GAGAACAAAAAGAAA 1 chrXIV:718793-719092 ( 69) GACAGGAAAAAAAAA 1 chrII:644640-645899 ( 20) AGAAACAAAAAATAA 1 chrII:477048-477774 ( 9) TCAAGAAAAAAAAAA 1 chrVII:648760-649391 ( 81) TGAAAACAAAAAGAA 1 chrVI:233876-234201 ( 83) GAAAATAATAAAAAA 1 chrXV:571739-572128 ( 9) TGAAAAAATAAAAAA 1 chrIV:667724-668210 ( 75) GAGAAAAAATAAAAA 1 chrXI:38713-39548 ( 32) GCAAACAAAAAGTAA 1 chrXVI:860131-860722 ( 78) GGGAGCAAAAAATAA 1 chrVII:554898-555902 ( 50) GGAAACAAACAAGAA 1 chrXIV:725909-726336 ( 44) CAAAATAAAAAAAAA 1 chrXII:214623-215067 ( 72) AAAAGTAAAAAATAA 1 chrX:157479-157579 ( 82) AAAAACCAAAAATAA 1 chrVI:226471-227169 ( 59) GACAGGAAAAAGAAA 1 chrX:607892-607992 ( 73) TAAAAAAAAAATTAA 1 chrX:531589-531689 ( 50) TCCAGAAAAAAAGAA 1 chrVII:531365-531796 ( 7) AACAAACAAAAATAA 1 chrIV:358007-358493 ( 75) TAAAAAAAAAAATAC 1 chrV:435620-435997 ( 69) GAAAAACAACAATAA 1 chrIV:1400894-1403394 ( 24) TGAAATAAAAGAGAA 1 chrIV:1149701-1149858 ( 74) GAAAAGAAATAGAAA 1 chrXII:522167-522416 ( 15) TCAAAAAAAAAAAAC 1 chrXI:434724-435458 ( 82) AGGAAAAAACAAAAA 1 chrIV:56186-56764 ( 13) TCGAAAAATAAAGAA 1 chrIV:1087489-1087792 ( 4) GGCAGAAAAAGAGAA 1 chrXIII:320908-321323 ( 67) CAAAAAAATAAAAAA 1 chrVII:736203-736815 ( 11) TAGAAAAATAAGAAA 1 chrXIV:722309-722842 ( 13) GGAAGACAAAGAAAA 1 chrV:322117-322819 ( 22) GAAAAAAATTAAGAA 1 chrVII:533825-535193 ( 21) TAAAGTAAAAAGTAA 1 chrXV:616170-617729 ( 80) GCGAACAAACAAGAA 1 chrX:73371-73471 ( 21) TGCAAAAAAAATAAA 1 chrXII:975713-976177 ( 73) TGCAAAAAAAATAAA 1 chrXII:1027386-1028538 ( 79) GCAAAAACAAAAGAA 1 chrV:207363-207541 ( 30) GAATATAAAAAATAA 1 chrIV:1256776-1257284 ( 1) GAGTATAAAAAAAAA 1 chrVII:310344-312519 ( 56) TCGAAACAAAAGAAA 1 chrXII:48712-49219 ( 19) GGCAAGTAAAAAGAA 1 chrX:422649-422749 ( 21) GGGAAGAAAAACAAA 1 chrXV:307842-308134 ( 82) GGAAACCAATAAAAA 1 chrXV:663359-664115 ( 22) GAGAAAAATAATGAA 1 chrXI:513000-513592 ( 67) AAAAAGCAAAATAAA 1 chrXII:1051939-1052221 ( 26) AAGTAAAAAAAATAA 1 chrXVI:888326-889173 ( 35) ACAAAGTAAAAAGAA 1 chrII:603906-607120 ( 35) ACGAAGAATAAATAA 1 chrVIII:466834-467356 ( 25) GAAAAAAAATAATAC 1 chrXI:74407-75009 ( 41) AAAAGTTAAAAATAA 1 chrXI:451855-452583 ( 6) AAGAATAATAGATAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DAAAAAAAAAAAWAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 10.8469 E= 2.4e-031 -31 -286 119 -10 90 -27 46 -1289 112 -54 5 -1289 164 -1289 -1289 -297 145 -1289 -27 -1289 69 -54 -5 -75 145 -69 -1289 -297 167 -386 -1289 -1289 149 -1289 -1289 -123 151 -186 -1289 -223 157 -1289 -127 -1289 133 -386 -40 -223 65 -1289 31 -16 169 -1289 -1289 -1289 164 -227 -1289 -1289 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DAAAAAAAAAAAWAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 76 E= 2.4e-031 0.250000 0.026316 0.434211 0.289474 0.578947 0.157895 0.263158 0.000000 0.671053 0.131579 0.197368 0.000000 0.960526 0.000000 0.000000 0.039474 0.842105 0.000000 0.157895 0.000000 0.500000 0.131579 0.184211 0.184211 0.842105 0.118421 0.000000 0.039474 0.986842 0.013158 0.000000 0.000000 0.868421 0.000000 0.000000 0.131579 0.881579 0.052632 0.000000 0.065789 0.921053 0.000000 0.078947 0.000000 0.776316 0.013158 0.144737 0.065789 0.486842 0.000000 0.236842 0.276316 1.000000 0.000000 0.000000 0.000000 0.960526 0.039474 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DAAAAAAAAAAAWAA MEME-3 regular expression -------------------------------------------------------------------------------- [GTA][AG]AAAAAAAAAA[ATG]AA -------------------------------------------------------------------------------- Time 988.91 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:347414-347921 8.82e-06 40_[+1(6.85e-09)]_31 chrVIII:296791-297226 2.50e-02 100 chrXV:184932-185644 2.33e-01 100 chrVII:141493-141846 2.35e-01 100 chrXI:163708-164385 4.56e-01 100 chrI:138973-139349 2.41e-01 100 chrIV:1300066-1301322 9.29e-01 100 chrXVI:860131-860722 3.16e-11 44_[+1(1.20e-12)]_4_[-3(6.10e-06)]_\ 8 chrXIII:872554-873155 4.61e-01 100 chrVII:510761-511099 6.98e-03 [-3(2.31e-06)]_85 chrVII:373828-374123 2.02e-01 100 chrXI:385672-386147 2.91e-01 100 chrIV:619702-620212 5.99e-06 61_[-1(3.04e-09)]_10 chrIII:162544-163311 4.73e-01 100 chrXVI:559848-560297 2.53e-01 100 chrIV:1071465-1071746 7.84e-01 100 chrXI:513000-513592 2.75e-02 66_[+3(3.41e-05)]_19 chrIX:375295-375750 9.21e-02 100 chrXIV:718793-719092 1.71e-04 68_[+3(2.58e-06)]_17 chrIV:946147-946599 2.98e-08 3_[+2(3.27e-07)]_16_[+1(3.37e-08)]_\ 23 chrXII:384292-385417 6.42e-01 100 chrIX:370221-370909 5.20e-01 100 chrII:301111-301901 3.06e-01 100 chrXI:434724-435458 3.41e-02 81_[+3(1.43e-05)]_4 chrXVI:302508-302945 7.01e-01 100 chrVII:411521-412589 8.00e-01 100 chrXV:850230-850492 6.93e-01 100 chrXII:127462-127926 2.78e-01 100 chrVII:882446-883925 8.53e-01 100 chrXV:943162-943421 2.59e-01 100 chrXIII:259015-259377 3.07e-11 11_[-1(4.01e-09)]_11_[-2(1.71e-08)]_\ 20 chrV:207363-207541 3.92e-02 29_[-3(1.98e-05)]_56 chrXVI:677125-677562 4.44e-02 12_[+2(2.61e-05)]_59 chrII:642865-643260 6.39e-04 25_[-2(1.00e-07)]_46 chrIV:693057-693291 3.26e-01 100 chrXV:806890-807109 4.52e-01 100 chrIV:884264-884574 3.45e-02 100 chrXIV:76371-76654 2.36e-01 100 chrVII:115333-115744 1.16e-10 12_[+2(6.28e-09)]_25_[+1(2.07e-09)]_\ 5 chrXII:805813-806762 9.48e-02 100 chrVIII:381507-382332 1.22e-01 100 chrX:542458-542558 9.53e-01 100 chrVII:345939-346989 5.15e-01 100 chrVIII:505833-507026 2.84e-01 100 chrXII:1027386-1028538 7.72e-03 78_[-3(1.98e-05)]_7 chrXIII:420316-420880 2.21e-11 39_[-1(6.44e-11)]_2_[-2(3.52e-08)]_\ 1 chrXIV:493954-495018 1.65e-01 100 chrXV:92802-94789 4.08e-01 100 chrVII:422890-423562 4.35e-02 100 chrXVI:797478-797700 6.74e-01 100 chrXIII:220046-220838 9.36e-01 100 chrIX:98548-99485 5.41e-01 100 chrXV:733260-733590 6.06e-01 100 chrXIII:372184-372654 1.37e-02 100 chrVII:1026836-1027468 7.02e-01 100 chrXI:578174-579464 3.10e-01 100 chrX:424291-424391 8.60e-06 26_[-2(1.90e-08)]_45 chrVII:49488-49936 5.99e-01 100 chrXVI:406214-406911 6.92e-02 100 chrVI:228446-229291 1.75e-01 100 chrXI:382211-382428 7.65e-01 100 chrXII:975713-976177 7.68e-02 72_[+3(1.98e-05)]_13 chrXII:95546-95900 4.06e-01 100 chrXI:46715-47002 5.47e-01 100 chrV:354704-355338 3.67e-06 5_[+1(1.40e-09)]_66 chrII:87985-88556 1.56e-01 100 chrVII:276983-277394 5.04e-02 100 chrXIII:586390-586888 6.77e-09 46_[-1(6.44e-11)]_25 chrXIV:374585-375503 7.93e-01 100 chrIII:107101-107783 6.21e-01 100 chrXII:592105-592906 1.49e-04 48_[+3(9.21e-07)]_[-1(6.40e-05)]_8 chrVIII:143070-143643 1.03e-01 100 chrXI:108368-109055 4.25e-01 100 chrIII:141921-142951 8.85e-02 100 chrXIII:104587-105676 5.03e-01 100 chrII:44898-45326 3.30e-03 10_[-3(4.07e-07)]_75 chrV:423064-423487 7.54e-01 100 chrXII:459636-460679 4.92e-01 100 chrIV:1135598-1136559 9.38e-01 100 chrXII:214623-215067 1.97e-02 71_[+3(8.23e-06)]_14 chrVII:310344-312519 5.54e-03 55_[-3(2.33e-05)]_30 chrXVI:621981-623147 4.19e-05 25_[-1(4.82e-08)]_46 chrVI:223283-224168 4.07e-01 100 chrXV:79751-80103 5.84e-01 100 chrVII:878562-879049 1.07e-01 100 chrXII:426891-427476 5.19e-06 41_[+1(6.85e-09)]_30 chrII:59846-61262 9.60e-01 100 chrXIII:43234-43799 6.08e-01 100 chrXV:1035545-1036572 4.97e-01 100 chrVIII:180179-180558 3.66e-01 100 chrVII:131050-131979 2.67e-01 100 chrXI:67801-68010 3.60e-01 100 chrXVI:99347-99863 4.48e-01 100 chrII:332139-332875 5.88e-01 100 chrXV:281699-282584 9.61e-01 100 chrVII:805799-806316 6.77e-01 100 chrXVI:404967-406011 2.22e-01 100 chrXII:628062-628664 1.75e-01 100 chrXVI:819339-819834 8.93e-13 6_[+2(3.46e-09)]_2_[+1(4.35e-11)]_\ 34 chrX:73371-73471 2.00e-02 20_[-3(1.98e-05)]_65 chrVI:157894-158272 8.75e-01 100 chrXII:96057-96308 7.46e-01 100 chrXVI:689395-689875 3.57e-05 32_[+1(1.70e-08)]_39 chrXIII:195031-196298 9.40e-01 100 chrXII:374198-374672 1.18e-05 13_[+1(3.04e-09)]_58 chrIII:102542-103438 4.82e-01 100 chrIV:358007-358493 7.40e-03 25_[-3(2.94e-05)]_34_[-3(1.19e-05)]_\ 11 chrXVI:918886-919122 8.89e-01 100 chrXIII:225264-225692 4.38e-01 100 chrXV:228057-228566 9.88e-01 100 chrXIII:296684-298932 7.53e-01 100 chrIX:248510-248959 4.21e-01 100 chrVI:162021-162884 3.90e-01 100 chrVII:110308-110784 5.87e-01 100 chrV:135119-136168 7.58e-01 100 chrIV:644781-645369 2.55e-03 75_[+3(2.70e-07)]_10 chrXV:710124-710724 1.64e-01 100 chrXIII:91405-92093 1.29e-01 100 chrIX:210516-211400 3.22e-01 100 chrXV:571739-572128 1.00e-02 8_[-3(4.07e-06)]_77 chrVII:831943-832789 4.57e-01 100 chrXIII:898359-898627 7.22e-01 100 chrVIII:382938-383352 3.31e-01 100 chrXVI:910619-912755 1.04e-01 100 chrV:443056-443380 3.52e-13 33_[-1(4.35e-11)]_2_[-2(3.46e-09)]_\ 7 chrVII:648760-649391 3.00e-03 60_[+3(1.09e-05)]_5_[+3(2.94e-06)]_\ 5 chrXVI:75377-76890 2.97e-01 100 chrXIV:96008-96503 3.86e-08 35_[-1(7.32e-11)]_36 chrXV:976286-976622 3.90e-12 29_[+2(7.91e-09)]_2_[+1(4.35e-11)]_\ 11 chrX:575631-575731 4.21e-01 100 chrVII:738916-739582 9.64e-01 100 chrX:517400-517500 7.09e-01 100 chrXII:720640-721437 6.88e-01 100 chrXII:281969-284101 3.29e-01 100 chrII:36242-36559 1.00e-03 60_[+2(1.55e-07)]_11 chrXIV:47786-48105 5.77e-01 100 chrXIV:632410-632859 4.76e-14 28_[+2(4.82e-10)]_2_[+1(2.20e-10)]_\ 12 chrI:108308-108681 5.01e-01 100 chrVII:699605-701229 9.17e-02 100 chrXI:490770-491427 1.87e-01 100 chrXI:386602-387229 9.91e-01 100 chrV:396027-396542 9.81e-01 100 chrXI:589329-590850 4.18e-01 100 chrXV:841290-842175 4.39e-02 9_[+3(9.94e-05)]_76 chrIV:1149701-1149858 3.39e-02 73_[+3(1.29e-05)]_12 chrXIV:34643-34852 6.00e-02 100 chrVII:554898-555902 3.52e-02 49_[-3(6.80e-06)]_36 chrX:607892-607992 3.15e-02 72_[-3(9.90e-06)]_13 chrXI:92842-93667 5.90e-01 100 chrVIII:164349-165402 8.50e-01 100 chrXIV:359064-359319 3.62e-01 100 chrVIII:134123-134743 1.68e-02 100 chrXIII:754452-754790 4.93e-01 100 chrIV:42093-42403 1.97e-01 100 chrVIII:466834-467356 6.91e-02 24_[-3(4.48e-05)]_61 chrV:403542-405226 8.62e-01 100 chrVII:729540-730125 6.68e-02 100 chrX:233726-233826 8.01e-12 26_[+2(1.43e-09)]_2_[+1(5.43e-10)]_\ 14 chrIV:308036-308648 7.09e-01 100 chrXII:559405-559666 9.70e-01 100 chrIV:628099-628642 6.48e-01 100 chrXIII:504909-505237 1.26e-02 100 chrVI:226471-227169 6.77e-03 58_[-3(9.03e-06)]_27 chrI:182128-183125 1.65e-01 100 chrIV:667724-668210 7.06e-03 74_[+3(5.02e-06)]_11 chrIV:124749-126505 9.02e-02 100 chrXIII:168242-169027 4.25e-01 100 chrI:62725-63157 6.45e-01 100 chrIV:1135206-1135436 1.60e-01 100 chrXV:273514-273835 2.49e-01 100 chrX:390818-390918 4.16e-10 3_[+3(1.80e-06)]_37_[-1(4.35e-11)]_\ 16 chrIV:431728-432063 6.98e-02 100 chrXI:431365-431640 8.75e-01 100 chrXIV:493207-493586 4.64e-01 100 chrVIII:284351-285235 9.84e-01 100 chrXV:44846-45198 2.08e-01 100 chrIV:1400894-1403394 5.50e-02 23_[-3(1.29e-05)]_62 chrXIV:707699-709220 1.67e-01 100 chrX:453624-453724 8.81e-01 100 chrIX:299925-300504 8.33e-08 63_[-1(1.07e-10)]_8 chrXIII:56481-57319 4.40e-01 100 chrXVI:874635-874934 4.86e-01 100 chrVI:63978-65399 8.64e-01 100 chrVIII:360462-361049 2.99e-01 100 chrXVI:856728-857120 1.51e-08 40_[+2(1.30e-06)]_2_[+1(1.88e-09)] chrXV:830011-830792 9.84e-02 100 chrXI:84007-84675 3.89e-03 6_[-3(9.21e-07)]_79 chrXV:253834-254125 9.22e-01 100 chrV:110545-111101 1.41e-01 100 chrIV:1150027-1151136 4.59e-01 100 chrIV:51914-52837 2.30e-01 100 chrVIII:74695-75926 3.00e-01 100 chrIII:177108-179685 7.62e-01 100 chrIII:214020-214305 6.95e-01 100 chrXVI:280501-281911 6.19e-01 100 chrIX:257385-257983 7.57e-01 100 chrXV:185867-187325 6.28e-01 100 chrX:604110-604210 7.14e-01 100 chrVIII:388590-388999 7.62e-01 100 chrX:449146-449246 4.97e-01 100 chrXV:226330-226886 1.20e-08 52_[-1(1.20e-12)]_19 chrXIV:214214-215319 3.49e-03 69_[+3(5.48e-07)]_16 chrXIII:321873-322189 2.76e-01 100 chrXIV:784068-784309 9.89e-01 100 chrIV:1256776-1257284 1.92e-11 [+3(2.16e-05)]_12_[-1(5.05e-13)]_44 chrXII:92403-93208 7.74e-01 100 chrVI:180596-181252 3.44e-01 100 chrX:414240-414340 4.66e-01 100 chrVII:544395-544903 3.83e-01 100 chrXV:47349-47665 6.33e-01 100 chrIV:221096-222569 1.63e-01 100 chrXIII:56027-56308 1.44e-01 100 chrXVI:572053-572820 2.18e-01 100 chrIV:304622-305268 1.84e-01 100 chrXV:353916-354305 9.53e-09 11_[-2(3.59e-12)]_60 chrIV:980593-981220 1.48e-01 100 chrV:522477-522898 2.75e-01 100 chrXVI:435627-436176 2.53e-06 41_[-1(1.70e-09)]_30 chrV:438517-439005 3.85e-12 2_[+2(3.52e-08)]_2_[+1(6.44e-11)]_\ 38 chrVI:56248-56545 1.77e-01 100 chrIV:1201557-1202017 4.09e-13 25_[+2(3.12e-10)]_2_[+1(1.07e-10)]_\ 15 chrXI:80197-80599 4.11e-01 100 chrIV:568339-569368 7.15e-01 100 chrIV:411277-411597 6.44e-01 100 chrIV:1087489-1087792 5.07e-03 3_[+3(1.68e-05)]_82 chrXIV:167282-167850 2.74e-01 100 chrVII:38982-39916 6.81e-01 100 chrXII:855812-857332 1.69e-01 100 chrVII:319208-320234 9.37e-02 100 chrXIII:191418-191972 9.75e-01 100 chrIV:1450193-1451824 4.80e-03 68_[+3(1.05e-06)]_17 chrXV:1025726-1026089 2.46e-01 100 chrVII:706926-707179 2.52e-03 40_[+3(3.20e-07)]_5_[+3(1.43e-05)]_\ 25 chrXV:920584-921353 2.59e-01 100 chrXII:262826-263953 2.05e-01 100 chrVII:36868-37075 3.30e-01 100 chrXIII:480433-480816 1.05e-06 46_[-1(1.07e-10)]_25 chrVII:481481-482692 9.43e-01 100 chrXIII:747768-748129 4.59e-05 24_[-2(1.71e-08)]_47 chrXIV:470771-471645 4.57e-01 100 chrXI:457602-458935 6.87e-01 100 chrIV:1355745-1356232 2.31e-01 100 chrX:523919-524019 2.17e-01 100 chrVII:254125-254707 3.29e-01 100 chrIV:1001698-1002260 3.54e-01 100 chrVII:328381-329048 9.84e-01 100 chrXVI:797102-797314 8.28e-01 100 chrV:140493-140888 8.77e-01 100 chrII:165099-165394 2.11e-01 100 chrX:613181-613281 2.26e-01 100 chrXI:307903-308426 3.59e-12 29_[-1(6.44e-11)]_2_[-2(3.52e-08)]_\ 11 chrXI:566127-566351 8.27e-01 100 chrXII:589158-589717 5.56e-01 100 chrIV:578758-580412 5.07e-01 100 chrIV:321648-321934 3.68e-01 100 chrX:83967-84067 8.22e-01 100 chrXVI:769033-769474 1.16e-10 3_[-1(2.07e-09)]_25_[-2(6.28e-09)]_\ 14 chrXVI:432518-434601 5.03e-01 100 chrXI:401211-402130 2.62e-01 100 chrXIII:253399-254322 8.66e-01 100 chrXV:663359-664115 3.83e-02 21_[-3(2.94e-05)]_64 chrV:167126-168218 1.96e-01 100 chrXVI:120879-121357 7.65e-01 100 chrXVI:188542-189269 4.28e-04 79_[-3(2.70e-07)]_6 chrXIII:290598-291148 5.85e-06 20_[+1(1.40e-09)]_51 chrIV:434104-435001 5.03e-01 100 chrVI:167018-167688 2.92e-01 100 chrIV:519659-519906 9.29e-10 24_[+2(1.90e-08)]_12_[+1(6.85e-09)]_\ 6 chrXIV:725909-726336 3.19e-08 43_[+3(8.23e-06)]_3_[-1(6.85e-09)]_\ 10 chrXVI:712848-713779 4.66e-01 100 chrIV:83427-84049 6.41e-01 100 chrXII:962864-963265 1.97e-01 100 chrIII:280654-281146 3.44e-01 100 chrVII:364943-366648 8.82e-01 100 chrV:322117-322819 3.62e-02 21_[+3(1.84e-05)]_64 chrVII:322-926 2.84e-02 55_[-2(6.78e-05)]_16 chrVII:774167-774731 3.72e-01 100 chrXIV:366031-366996 8.99e-01 100 chrXIII:730836-731239 2.51e-01 100 chrII:89669-90455 6.28e-01 100 chrXIV:545191-545666 3.97e-01 100 chrI:71805-73719 3.66e-01 100 chrXII:636737-639959 6.26e-02 100 chrV:67149-68952 9.45e-01 100 chrXII:734449-734934 2.83e-01 100 chrIII:236278-236601 1.60e-01 100 chrX:257175-257275 7.78e-02 100 chrXI:201982-203326 3.82e-02 100 chrVII:478964-481272 2.91e-01 100 chrXII:498238-500101 6.54e-01 100 chrII:181159-181620 8.81e-01 100 chrV:434388-435240 6.86e-01 100 chrXI:74407-75009 9.39e-08 10_[+1(2.20e-10)]_1_[-3(7.90e-05)]_\ 45 chrIX:316066-316572 5.44e-01 100 chrVIII:145330-146464 7.82e-01 100 chrXIII:99006-99495 2.67e-03 72_[+3(6.60e-07)]_13 chrIV:229136-230514 9.30e-01 100 chrV:176883-177413 2.75e-09 13_[+2(5.59e-07)]_1_[+1(1.40e-09)]_\ 28 chrII:266203-266675 6.27e-14 1_[+2(3.59e-12)]_2_[+1(5.75e-09)]_\ 39 chrII:483764-484047 4.91e-02 24_[-2(3.99e-05)]_47 chrXVI:95404-95741 5.99e-01 100 chrXI:313200-314114 6.05e-01 100 chrIX:316763-317609 4.32e-02 100 chrX:316280-316380 5.52e-01 100 chrXII:793563-794008 9.91e-01 100 chrXI:133769-134189 7.40e-01 100 chrVII:794264-794504 6.18e-01 100 chrXI:38713-39548 1.50e-02 31_[+3(5.52e-06)]_54 chrIV:847369-848003 8.20e-02 100 chrX:594324-594424 1.10e-01 100 chrIX:288587-289093 5.08e-01 100 chrIV:56186-56764 1.30e-02 12_[+3(1.55e-05)]_73 chrXVI:338517-339386 7.22e-01 100 chrIII:46676-46970 5.26e-01 100 chrXV:56072-56836 4.13e-01 100 chrXIV:240822-241977 5.94e-01 100 chrXI:618802-619397 2.61e-01 100 chrX:617697-617797 6.78e-05 7_[+2(5.19e-07)]_29_[+1(6.40e-05)]_\ 6 chrXI:487630-488048 4.27e-01 100 chrXIV:569513-570167 1.39e-02 61_[+3(2.08e-06)]_24 chrXIII:463339-463984 7.74e-01 100 chrXII:522167-522416 5.16e-02 14_[+3(1.43e-05)]_71 chrII:326317-327100 4.09e-01 100 chrIX:67661-68491 1.44e-01 100 chrIV:107023-107976 9.05e-01 100 chrX:227299-227399 8.63e-01 100 chrIV:216558-217498 4.34e-01 100 chrXVI:48475-49419 7.87e-01 100 chrXV:303399-304111 7.89e-01 100 chrXV:28811-29162 9.64e-01 100 chrXV:161149-161720 9.18e-01 100 chrXIV:531673-532284 7.17e-01 100 chrVII:541715-542350 2.35e-01 100 chrII:477048-477774 3.42e-03 8_[+3(2.94e-06)]_77 chrXV:741499-741816 7.08e-01 100 chrVII:287121-287674 6.94e-06 2_[-1(1.14e-08)]_69 chrXIV:88952-90403 7.58e-01 100 chrXV:979737-981437 5.75e-01 100 chrII:167648-168192 9.28e-01 100 chrIV:263926-264189 1.89e-01 100 chrXIII:841606-842218 3.04e-01 100 chrVII:1003999-1004430 4.32e-04 63_[+2(2.01e-07)]_8 chrXIV:61956-64556 3.76e-01 100 chrXIII:625832-626999 6.33e-01 100 chrIV:478542-478863 5.57e-01 100 chrXV:552755-552955 7.19e-01 100 chrXVI:731609-732309 5.05e-01 100 chrX:745029-745129 9.04e-01 100 chrXII:424242-424450 8.54e-02 66_[+2(8.78e-05)]_5 chrV:99682-100309 2.03e-01 100 chrX:59083-59183 5.52e-01 100 chrX:354026-354126 1.57e-03 61_[+2(3.02e-07)]_10 chrXII:604368-605633 9.20e-02 32_[-2(5.58e-05)]_39 chrVII:823338-823699 2.20e-11 27_[+2(3.52e-08)]_2_[+1(6.44e-11)]_\ 13 chrIV:1359169-1360836 4.07e-01 100 chrIII:163503-163850 7.95e-01 100 chrXV:487433-487815 8.77e-01 100 chrIII:227775-228288 8.17e-05 32_[+1(1.70e-08)]_39 chrXVI:775644-776188 9.53e-01 100 chrXV:300906-301911 6.93e-01 100 chrXIII:23417-23772 8.11e-01 100 chrX:226924-227024 9.67e-01 100 chrXV:444619-446166 2.32e-01 100 chrVII:205332-205770 9.65e-02 33_[+2(9.36e-05)]_38 chrXII:673548-674543 3.73e-01 100 chrVII:452028-452593 2.35e-01 100 chrIV:488458-489209 1.89e-10 13_[-1(3.76e-12)]_2_[-2(5.63e-06)]_\ 27 chrXVI:355104-355469 2.64e-01 100 chrXV:160360-160701 7.61e-01 100 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chrXV:593978-594677 3.30e-03 21_[+3(2.08e-06)]_64 chrXV:340172-340584 8.88e-06 1_[-2(1.43e-09)]_70 chrVII:779417-779956 1.60e-07 22_[+1(7.32e-11)]_49 chrVI:210431-210895 5.54e-08 5_[-1(3.37e-08)]_16_[-2(3.02e-07)]_\ 21 chrVIII:62530-63052 8.49e-06 56_[+1(4.49e-08)]_15 chrXV:159151-160130 6.27e-01 100 chrVII:561301-561718 1.38e-01 100 chrXV:978856-979103 8.57e-01 100 chrVIII:451294-453065 9.29e-01 100 chrI:76032-76653 4.79e-01 100 chrX:391831-391931 2.81e-01 100 chrXIII:131481-132083 4.14e-01 100 chrV:130812-131442 3.93e-07 4_[-1(2.07e-09)]_67 chrXII:551832-552550 9.99e-02 100 chrXV:552204-552579 4.86e-01 100 chrVII:36476-36709 8.63e-01 100 chrVIII:179796-180023 8.74e-01 100 chrXV:55472-55894 1.92e-01 100 chrV:207739-207921 8.10e-01 100 chrXVI:69178-69983 3.30e-01 100 chrXI:282853-284464 9.07e-01 100 chrXII:780838-781899 1.49e-01 100 chrXII:260890-261545 7.49e-01 100 chrXV:1027916-1029338 7.18e-01 100 chrXIV:560149-560868 8.22e-01 100 chrXII:1017527-1019391 3.33e-01 100 chrXII:731192-732322 7.08e-01 100 chrIII:151127-151572 3.48e-06 15_[-2(3.12e-10)]_56 chrVII:845459-845954 1.22e-08 34_[+1(1.20e-12)]_37 chrXVI:520103-520682 2.70e-02 10_[+1(5.37e-05)]_61 chrX:650668-650768 3.17e-01 100 chrXIII:320908-321323 4.16e-02 66_[+3(1.84e-05)]_19 chrXIV:255163-255681 2.52e-01 100 chrIV:1461464-1461837 7.77e-01 100 chrXII:366761-366936 5.01e-01 100 chrXIV:412530-413289 1.92e-01 100 chrXIII:14486-15369 8.13e-01 100 chrXI:379692-379936 7.65e-02 100 chrXIII:498865-500766 9.77e-01 100 chrXVI:744099-744514 8.99e-09 39_[+2(2.01e-07)]_2_[+1(6.85e-09)]_\ 1 chrXV:510793-511284 5.82e-02 45_[-1(3.59e-05)]_26 chrVIII:281059-282341 8.42e-01 100 chrVIII:237762-238128 3.45e-04 2_[-2(1.55e-07)]_69 chrVIII:103808-104714 3.01e-01 100 chrI:142173-143547 9.13e-01 100 chrVIII:214166-214320 6.52e-04 65_[-3(1.31e-07)]_20 chrIII:127583-127877 1.13e-06 49_[+2(4.82e-10)]_22 chrIX:378148-378736 9.97e-01 100 chrXVI:639395-639735 8.22e-01 100 chrXV:760857-761356 6.85e-01 100 chrV:270401-271080 6.95e-01 100 chrVIII:148968-149411 5.74e-01 100 chrXVI:627216-627476 9.44e-01 100 chrVII:635674-636186 6.24e-01 100 chrX:454258-454358 7.38e-01 100 chrVIII:493840-494130 5.26e-01 100 chrIX:188001-189159 1.91e-01 100 chrX:703296-703396 8.64e-02 100 chrXII:818502-819164 9.90e-02 100 chrX:187257-187357 8.38e-01 100 chrVII:80871-81258 2.51e-01 100 chrIII:295322-296040 8.82e-01 100 chrIII:123322-123797 1.58e-07 67_[-1(9.37e-12)]_4 chrIV:520724-521158 1.63e-01 100 chrVIII:475511-475905 1.03e-08 47_[-1(1.98e-12)]_24 chrX:663369-663469 8.83e-01 100 chrXII:784092-784517 8.76e-01 100 chrIII:118232-119265 2.28e-01 100 chrIV:1489314-1489876 4.31e-01 100 chrIV:145170-145565 7.41e-01 100 chrX:531589-531689 1.26e-10 13_[+1(1.20e-12)]_7_[-3(1.09e-05)]_\ 36 chrIII:262299-263176 1.15e-01 100 chrVI:53223-54229 1.51e-01 100 chrVIII:357933-358770 4.86e-01 100 chrX:538003-538103 6.13e-01 100 chrVI:101075-101480 4.18e-01 100 chrXIV:442763-444811 4.97e-01 100 chrIII:149729-150187 2.29e-05 23_[+2(1.69e-07)]_2_[+1(4.90e-05)]_\ 17 chrXVI:267206-267923 8.89e-01 100 chrXI:416712-416979 3.17e-02 23_[-2(6.57e-05)]_48 chrX:651874-651974 6.72e-02 100 chrIV:1175608-1176107 3.27e-12 34_[+2(7.91e-09)]_2_[+1(4.35e-11)]_\ 6 chrII:644640-645899 2.74e-03 19_[-3(2.94e-06)]_66 chrXV:307842-308134 3.66e-02 81_[+3(2.52e-05)]_4 chrIV:1116448-1117234 1.31e-02 55_[+3(2.58e-06)]_30 chrVI:233876-234201 3.84e-03 82_[-3(3.23e-06)]_3 chrIII:64742-65687 7.00e-01 100 chrVII:922043-922383 5.47e-01 100 chrI:166168-166588 5.02e-01 100 chrVI:149049-149799 3.24e-01 100 chrX:555102-555202 4.11e-01 100 chrXIII:731882-733603 8.70e-01 100 chrI:180957-181504 3.02e-04 74_[-3(1.41e-06)]_11 chrII:142171-142928 8.29e-01 100 chrXV:281321-281536 4.48e-01 100 chrII:405687-406202 7.22e-06 26_[+1(3.34e-09)]_45 chrXIV:56607-58684 8.28e-04 10_[+3(1.41e-06)]_75 chrXV:639162-639500 9.72e-01 100 chrV:61102-62212 9.08e-05 79_[-3(2.31e-07)]_6 chrXIII:572185-573124 2.12e-01 100 chrXV:326760-327090 5.22e-01 100 chrIV:68250-69496 7.87e-01 100 chrX:422649-422749 7.98e-07 20_[-3(2.52e-05)]_28_[+2(7.91e-09)]_\ 8 chrV:431013-432236 9.81e-01 100 chrVII:531365-531796 8.55e-04 6_[-3(1.19e-05)]_25_[-1(8.50e-05)]_\ 25 chrXIV:52561-52879 7.55e-01 100 chrVII:857110-857591 4.06e-03 3_[+3(4.57e-07)]_82 chrXV:712347-712956 5.24e-01 100 chrXVI:429793-430009 2.73e-01 100 chrVII:876165-878117 9.93e-01 100 chrXIII:755027-755209 5.64e-01 100 chrIX:174894-175202 8.37e-08 45_[+2(3.59e-12)]_26 chrIII:280020-280458 8.57e-01 100 chrXII:231704-234130 4.12e-01 100 chrXII:713158-713671 3.26e-01 100 chrXVI:729750-730117 8.46e-01 100 chrII:495152-496016 8.51e-01 100 chrII:141200-141944 8.34e-01 100 chrV:486977-487603 3.63e-01 100 chrIV:1075058-1075787 5.85e-02 100 chrXV:70222-70587 2.13e-03 53_[+3(2.58e-06)]_32 chrXV:901470-901652 2.81e-01 100 chrX:396028-396128 8.15e-01 100 chrXII:48712-49219 7.38e-02 18_[+3(2.52e-05)]_67 chrIV:1095170-1095655 6.56e-09 7_[-1(1.34e-08)]_21_[-2(1.55e-07)]_\ 14 chrXII:202873-203119 4.04e-01 100 chrIV:859014-859736 1.70e-01 100 chrV:409619-410053 9.17e-01 100 chrXII:1051939-1052221 1.52e-14 25_[+3(3.65e-05)]_[-1(4.35e-11)]_2_\ [-2(3.46e-09)] chrXV:866409-868073 6.67e-01 100 chrIV:292520-293033 6.55e-01 100 chrV:311738-312293 3.52e-07 57_[-1(7.32e-11)]_14 chrX:157479-157579 9.35e-03 81_[-3(9.03e-06)]_4 chrV:53535-54195 8.20e-01 100 chrXV:968173-968557 1.61e-01 100 chrXIV:568048-568887 6.69e-01 100 chrXV:288052-288395 1.10e-03 33_[+2(3.27e-07)]_38 chrXIII:652070-652932 5.27e-04 82_[-3(2.70e-07)]_3 chrIV:1016977-1017478 2.66e-13 13_[+3(2.70e-07)]_1_[-1(2.47e-10)]_\ 1_[-2(1.68e-06)]_12 chrVII:316802-317399 3.30e-01 100 chrV:435620-435997 9.59e-09 24_[-2(3.12e-10)]_15_[-3(1.29e-05)]_\ 17 chrXIII:742337-743445 5.35e-01 100 chrV:492235-492555 3.69e-11 6_[-1(3.04e-09)]_2_[-2(1.43e-09)]_\ 34 chrIX:254247-254540 3.21e-01 100 chrX:374180-374280 2.86e-10 32_[-1(3.34e-09)]_2_[-2(1.71e-08)]_\ 8 chrVII:787373-788733 3.56e-01 100 chrXIII:768194-768444 2.86e-01 100 chrXVI:581854-582320 1.72e-13 37_[+2(3.12e-10)]_2_[+1(1.07e-10)]_\ 3 chrV:249795-250956 2.39e-07 3_[+1(7.50e-10)]_68 chrVI:251287-253248 8.47e-01 100 chrIX:325744-326189 4.42e-01 100 chrVII:533825-535193 5.56e-02 20_[+3(1.98e-05)]_65 chrXV:779725-780971 9.34e-01 100 chrXV:110878-111193 3.34e-01 100 chrV:348762-349523 9.65e-01 100 chrXV:421429-422039 8.97e-01 100 chrIV:1436141-1436735 4.43e-01 100 chrIV:1352314-1353395 7.08e-01 100 chrV:288143-289169 7.97e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************