# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWR1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWR1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWR1/seqs-shuffled
#   positives: 716 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWR1/seqs-centered (Sat Jan 18 10:15:29 PST 2020)
#   negatives: 716 from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWR1/seqs-shuffled (Sat Jan 18 10:15:29 PST 2020)
#        host: kali.stanford.edu
#        when: Sat Jan 18 10:32:03 PST 2020

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.304 C 0.195 G 0.195 T 0.306


MOTIF TCGAACCB DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCGAACCB   VGGTTCGA         58          1   3.3e-017   1.1e-012
#         TCGAACCC   GGGTTCGA         27          0   5.8e-009   2.0e-004
#         TCGAACCG   CGGTTCGA         18          1   3.5e-005   1.2e+000
#         TCGAACCT   AGGTTCGA         13          0   1.2e-004   3.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 1.1e-012
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.465517 0.310345 0.224138


MOTIF ACCDCT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      ACCDCT     AGHGGT        120         52   1.8e-008   6.1e-004
#           ACCACT     AGTGGT         67         24   1.8e-006   6.3e-002
#           ACCTCT     AGAGGT         40         19   3.7e-003   1.2e+002
#           ACCGCT     AGCGGT         24          9   6.2e-003   2.1e+002

letter-probability matrix: alength= 4 w= 6 nsites= 138 E= 6.1e-004
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.536232 0.000000 0.173913 0.289855
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAAAADAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAADAA   TTHTTTTT        129         63   1.9e-007   6.2e-003
#         AAAAAGAA   TTCTTTTT         38         11   5.5e-005   1.8e+000
#         AAAAAAAA   TTTTTTTT         63         30   2.7e-004   9.0e+000
#         AAAAATAA   TTATTTTT         55         27   9.8e-004   3.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 152 E= 6.2e-003
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.427632 0.000000 0.223684 0.348684
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AACTKGG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     AACTKGG    CCMAGTT         43          9   6.7e-007   2.3e-002
#          AACTGGG    CCCAGTT         21          4   4.1e-004   1.4e+001
#          AACTTGG    CCAAGTT         22          5   6.9e-004   2.3e+001

letter-probability matrix: alength= 4 w= 7 nsites= 43 E= 2.3e-002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.488372 0.511628
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 23.90 seconds