Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/AWRI1631--SWI1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.019446 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/AWRI1631--SWI1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.057577 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/AWRI1631--SWI1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.075013 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.012412 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.06435 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/AWRI1631--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/background Finished invoke: name: bg status: 0 time: 0.014768 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 987.279336 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 35.819289 Invoking: centrimo -seqlen 558 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/AWRI1631--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.148706 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.448796 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/background -primary GRTCVBSGGTTCGAWYCCSVB /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/AWRI1631--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.495088 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/background -primary SNNSSCYTWWMCCACTVGGCCAMVVRRSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/AWRI1631--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.484316 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/background -primary DTTTMYWTYWYYTTYTTYYTTTYTYTYYY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/AWRI1631--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.452064 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/background -primary AAAAAAKA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/AWRI1631--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.419061 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/background -primary CCYTAACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/AWRI1631--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.219909 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/background -primary CACGRTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/AWRI1631--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.231059 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/background -primary GCGGRGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/AWRI1631--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.271199 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/background -primary CCRTACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/AWRI1631--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.266197 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/background --motif GRTCVBSGGTTCGAWYCCSVB /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/AWRI1631--SWI1.fa Finished invoke: name: fimo1 status: 0 time: 0.378097 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/background --motif SNNSSCYTWWMCCACTVGGCCAMVVRRSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/AWRI1631--SWI1.fa Finished invoke: name: fimo2 status: 0 time: 0.383866 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/background --motif DTTTMYWTYWYYTTYTTYYTTTYTYTYYY /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/AWRI1631--SWI1.fa Finished invoke: name: fimo3 status: 0 time: 0.419168 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/background --motif AAAAAAKA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/AWRI1631--SWI1.fa Finished invoke: name: fimo4 status: 0 time: 0.271614 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/background --motif CCYTAACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/AWRI1631--SWI1.fa Finished invoke: name: fimo5 status: 0 time: 0.265831 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/background --motif CACGRTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/AWRI1631--SWI1.fa Finished invoke: name: fimo6 status: 0 time: 0.254174 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/background --motif GCGGRGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/AWRI1631--SWI1.fa Finished invoke: name: fimo7 status: 0 time: 0.254234 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/background --motif CCRTACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/AWRI1631--SWI1.fa Finished invoke: name: fimo8 status: 0 time: 0.251932 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--SWI1/summary.tsv Finished invoke: name: summary status: 0 time: 0.14858 Done