******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--STE12/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:326572-327150 1.0000 100 chrVIII:358282-358774 1.0000 100 chrXIV:784063-784317 1.0000 100 chrVII:115327-115752 1.0000 100 chrXI:355288-357155 1.0000 100 chrI:141608-143665 1.0000 100 chrIV:1269875-1271071 1.0000 100 chrXVI:821607-822358 1.0000 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chrX:519771-519871 1.0000 100 chrXV:1048990-1049489 1.0000 100 chrII:136049-136270 1.0000 100 chrXV:758864-759549 1.0000 100 chrXV:778129-779536 1.0000 100 chrXIII:145990-146287 1.0000 100 chrVIII:113773-116431 1.0000 100 chrIV:1328746-1330040 1.0000 100 chrXV:619163-624413 1.0000 100 chrIV:308086-310176 1.0000 100 chrXV:505670-506954 1.0000 100 chrX:354037-354137 1.0000 100 chrXII:897770-899755 1.0000 100 chrXV:514434-514730 1.0000 100 chrXII:281927-282459 1.0000 100 chrVIII:296765-297212 1.0000 100 chrXV:842364-842950 1.0000 100 chrXII:252967-255706 1.0000 100 chrIV:1175615-1176037 1.0000 100 chrII:88910-89974 1.0000 100 chrIX:183104-183697 1.0000 100 chrXIII:625829-627369 1.0000 100 chrVI:86395-86989 1.0000 100 chrIV:1277755-1279079 1.0000 100 chrXII:734621-734931 1.0000 100 chrX:391798-391898 1.0000 100 chrXI:74440-74821 1.0000 100 chrXVI:303069-304363 1.0000 100 chrIV:232036-233952 1.0000 100 chrXIV:302635-303807 1.0000 100 chrXIII:115573-118942 1.0000 100 chrXV:795830-798829 1.0000 100 chrXI:364415-365259 1.0000 100 chrXIV:518816-519131 1.0000 100 chrII:347411-347932 1.0000 100 chrIV:129282-130967 1.0000 100 chrXII:1028777-1028947 1.0000 100 chrXII:566390-567012 1.0000 100 chrXIV:493294-495039 1.0000 100 chrVIII:466813-467256 1.0000 100 chrII:478962-479449 1.0000 100 chrXVI:424865-425599 1.0000 100 chrXI:462982-465017 1.0000 100 chrVII:771821-772293 1.0000 100 chrXIII:22138-23645 1.0000 100 chrXVI:879416-881097 1.0000 100 chrX:57858-57958 1.0000 100 chrV:310642-312289 1.0000 100 chrIV:45175-46196 1.0000 100 chrXV:779768-781041 1.0000 100 chrXII:498538-499795 1.0000 100 chrXIV:275476-277356 1.0000 100 chrXVI:794963-796166 1.0000 100 chrVII:541725-542158 1.0000 100 chrIX:335768-336618 1.0000 100 chrXIV:602102-602566 1.0000 100 chrXII:262886-263968 1.0000 100 chrXI:333800-335007 1.0000 100 chrXIII:837719-838215 1.0000 100 chrIV:322206-323627 1.0000 100 chrVIII:381443-384643 1.0000 100 chrXIII:768195-768439 1.0000 100 chrVII:397912-398326 1.0000 100 chrX:156125-156225 1.0000 100 chrIV:1150711-1151189 1.0000 100 chrV:362429-363313 1.0000 100 chrIV:721813-722095 1.0000 100 chrIX:384635-387059 1.0000 100 chrIII:295340-296038 1.0000 100 chrXV:217174-218443 1.0000 100 chrXIII:288010-289968 1.0000 100 chrV:544597-545115 1.0000 100 chrVII:147936-149446 1.0000 100 chrVII:273-928 1.0000 100 chrX:122156-122256 1.0000 100 chrIV:1268559-1269449 1.0000 100 chrIX:98191-99964 1.0000 100 chrII:332388-333062 1.0000 100 chrXIV:96005-96540 1.0000 100 chrXI:164930-165452 1.0000 100 chrII:301091-301700 1.0000 100 chrVII:23921-25812 1.0000 100 chrXIII:224654-224906 1.0000 100 chrXII:712086-712721 1.0000 100 chrIV:357200-358552 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--STE12/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--STE12/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--STE12/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.298 C 0.202 G 0.202 T 0.298 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/gm_results/AWRI1631--STE12/background): A 0.302 C 0.198 G 0.198 T 0.302 ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAAYGVYCNMDVSSRGRWTCGAACC MEME-1 width = 30 sites = 52 llr = 1028 E-value = 6.3e-183 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAAYGVYCNMDVSSRGRWTCGAACC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 77889786113113333:13:65:::aa:: pos.-specific C 11::::113:43535:454:::1:8:::a7 probability G 11:11111:83122143357a42::a:::: matrix T 1121:21262:4221312::::3a2::::3 bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 * * **** Relative 1.4 * ****** Entropy 1.2 * * ** ******* (28.5 bits) 0.9 *** * **** ******* 0.7 ***** * **** ******* 0.5 ******* *** * ******** ******* 0.2 ************* ******** ******* 0.0 ------------------------------ Multilevel AAAAAAAATGCTCCCGCCGGGAATCGAACC consensus T TC AC AATAGCA GT T T sequence G G AG T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGVYCNMDVSSRGRWTCGAACC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrV:550959-551559 + 68 6.88e-14 TACGATTTTC AAAAAAAATGGTCTCTAGCGGGATCGAACC GCT chrXV:281986-282419 - 61 3.66e-13 TGGTGGACAA AAAAGAAATGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrX:396540-396640 + 31 3.66e-13 AGAAATATAA AAAAGAAATGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrXII:1051935-1052200 + 46 5.18e-13 TTAAAGTAAA AAAAATAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrXIV:569613-570155 + 25 1.40e-12 CAATGCAAAA AAAAAGAATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrV:443062-443375 + 26 1.64e-12 AGATTTTCAA AAAAAATATGGTCTCTAGCGGGATCGAACC GCTGATCCCC chrX:531584-531684 - 19 6.33e-12 GAAAAAAAGA AAAGAAACTGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrV:438503-439002 - 50 7.29e-12 GTTTTCGAAA AAAAAAATTGATTTCGCCCAGGATCGAACT GGGGACGTTC chrXV:976281-976741 - 11 1.67e-11 ATATTAGCAA AAAAATATTGCTCCAGGGGAGGTTCGAACT CTCGACCTTC chrIV:1016961-1017481 + 28 2.17e-11 TAGAAAATAA AAAAGAAACTCCGAAGCGGGGAGTCGAACC CCGGTCTCCA chrVII:828417-828977 + 68 3.63e-11 TTTTTATTGC AAAAAAAGCACTCACGATGGGGGTCGAACC CAT chrV:130805-131399 + 22 4.11e-11 TGAGCGGGGG AAAAAAATAGGTCTTACCCGGATTCGAACC GGGGTTGTTC chrX:378245-378345 - 63 5.26e-11 TAAAAAAA CAAAAAATTGATTTCGCCCAGGATCGAACT GGGGACGTTC chrII:644962-645438 - 67 5.26e-11 AACA AAAAATAACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrXIII:320977-321320 + 41 5.94e-11 AGCCAAAAAA ATAAAAAATGGACGAGTCCGGAATCGAACC GGAGACCTCT chrXIII:572629-573150 + 36 6.70e-11 AAGTTTTGAA AAAAAATGTGCTCCAGGGGAGGTTCGAACT CTCGACCTTC chrV:288114-288719 + 69 7.56e-11 CTCTAACAAT AAAAAAAACGACACCAGCAGGATTTGAACC AG chrXIII:463349-463878 - 41 8.51e-11 CTGGTCTGAT AAAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrII:266211-266661 - 43 1.21e-10 TTTCAGTATT CAAAAAAATGCTTCCAATCGGATTTGAACC GATGATCTCC chrXIII:420283-420864 + 57 1.21e-10 TAACGGCTGA GATAAAAATGATTTCGCCCAGGATCGAACT GGGGACGTTC chrXIII:258977-259380 + 22 1.35e-10 TCAAGAGGCA AAAAATAACGACAACTGCAGGACTCGAACC TGCGCGGGCA chrVII:774163-774711 - 13 1.51e-10 ATTAAAAGTA AAAAAATTTGGACGAGTCCGGAATCGAACC GGAGACCTCT chrXIV:96005-96540 + 11 2.35e-10 CAATGTCATC AAAAAATTTGAGCGGTACGAGAATCGAACC CGTGTCCCCA chrVII:823350-823731 - 44 2.35e-10 AATGTAATCT TCAAAAAATGATTTCGCCCAGGATCGAACT GGGGACGTTC chrIX:248491-249393 - 18 2.62e-10 ATAAAAAAAA AAAAATAACGACACCAGCAGGATTTGAACC AGCGCGGGCA chrXIII:480410-480797 + 60 2.62e-10 TGAATCTTCA AAAAAAGAAGCCCTGTAGGGGGCTCGAACC CCTAACCTTA chrIV:83441-83816 - 19 2.62e-10 AAGAAAAAAA ATTAAACTTGCGCAAGCCCGGAATCGAACC GGGGGCCCAA chrVIII:133971-134773 - 49 3.61e-10 GTTCATTTTA GCAAAAAAAGGTCCTACCCGGATTCGAACC GGGGTTGTCC chrXIII:747663-748145 + 30 4.00e-10 AAAAAAAATA CTAAAAAACACTCACGATGGGGGTCGAACC CATAATCTTC chrXI:513075-513603 + 35 5.44e-10 AAAAGCAAAA TAAAAAATCTCCGCGACGGGGAATTGAACC CCGATCTGGC chrIV:884290-884636 - 59 6.65e-10 TGAAAAAAAA AGAGAAAGTGCTCGAGGTGGGGTTTGAACC CACGACGGTC chrXVI:856716-857184 - 53 7.34e-10 CATAATCAAA AATTAAAATGGACGAGTCCGGAATCGAACC GGAGACCTCT chrV:354709-355292 - 34 7.34e-10 TATGATGTCA AAAAAGTACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrXV:663489-664215 + 2 9.82e-10 T CTTAAAAATGATTTCGCCCAGGATCGAACT GGGGACGTTC chrXII:975790-976175 + 43 9.82e-10 TAATGCAAAA AAAATAAACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrVII:541725-542158 - 9 1.19e-09 GAGGTAAGAA AAAGAACACTCCGATACGGGGAGTCGAACC CCGGTCTC chrXIII:290585-291133 - 42 1.19e-09 ATTTCTTCAA AAAGAAGACTCCGATACGGGGAGTCGAACC CCGGTCTCCA chrX:374188-374288 + 20 1.30e-09 ATCACGGAAG AAACAAAGCACTCACGATGGGGGTCGAACC CATAATCTTC chrIII:90867-91113 - 11 1.57e-09 TGTTGAGGAA AAAAATAATGGTTGCTAAGAGATTCGAACT CTTGCATCTT chrI:180940-181520 - 53 1.57e-09 AGGAAAAAGA AAAAATAATGGTTGCTAAGAGATTCGAACT CTTGCATCTT chrVII:730964-731441 - 37 1.57e-09 CTCATTTCAA GCAAAAAACGACCCCAGTGAGGGTTGAACT CACGATCTTG chrII:9359-9895 - 68 2.68e-09 AAA AAAAATACTGAAGGATGCGAGGTTCGAACT CGCGCGGACA chrXV:300880-301450 - 62 2.92e-09 TTTCAATAG TAAAAAAGGGGGCGAGCTGGGAATTGAACC CAGGGCCTCT chrIV:619702-620189 + 66 3.46e-09 GAAAAATGTA TAAAAAATCTTCCCCGCCAGGACTTGAACC TGGAA chrIV:980724-981169 + 70 4.10e-09 GAAAATTTTT GGTAAAAACGACAACTGCAGGACTCGAACC T chrXI:578731-579418 - 15 4.83e-09 ATCTAAAAAA GTAAAGAACTCCTCATAGGGGGCTCGAACC CCTGACATTT chrXVI:744088-744578 - 51 4.83e-09 ACTTTAGGGA AAAAATTTTGCCACCTGTCAGAATTGAACT AACGACCTTT chrVII:779414-779930 - 44 1.32e-08 AAATTAAAAA AGTAATCTTGAGCGGTACGAGAATCGAACC CGTGTCCCCA chrVIII:475503-475921 + 36 1.75e-08 AAAAAATCGA TGTTAAAATGTTCCAACCGAGGATCGAACT CGGGACCTTT chrXIII:807951-808544 + 41 1.88e-08 ATACGAAAAA TGAAGGGAAGGTCCCACCCGGATTCGAACT GGGGTTGTTC chrII:347411-347932 - 44 7.93e-08 ATATTAAAAA AATATTACTGAAGGATGCGAGGTTCGAACT CGCGCGGACA chrVIII:466813-467256 - 56 1.04e-07 AAAATAATAC CGGTATAATGCCACCTGCCAGAATTGAACT AGCGACCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGVYCNMDVSSRGRWTCGAACC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:550959-551559 6.9e-14 67_[+1]_3 chrXV:281986-282419 3.7e-13 60_[-1]_10 chrX:396540-396640 3.7e-13 30_[+1]_40 chrXII:1051935-1052200 5.2e-13 45_[+1]_25 chrXIV:569613-570155 1.4e-12 24_[+1]_46 chrV:443062-443375 1.6e-12 25_[+1]_45 chrX:531584-531684 6.3e-12 18_[-1]_52 chrV:438503-439002 7.3e-12 49_[-1]_21 chrXV:976281-976741 1.7e-11 10_[-1]_60 chrIV:1016961-1017481 2.2e-11 27_[+1]_43 chrVII:828417-828977 3.6e-11 67_[+1]_3 chrV:130805-131399 4.1e-11 21_[+1]_49 chrX:378245-378345 5.3e-11 62_[-1]_8 chrII:644962-645438 5.3e-11 66_[-1]_4 chrXIII:320977-321320 5.9e-11 40_[+1]_30 chrXIII:572629-573150 6.7e-11 35_[+1]_35 chrV:288114-288719 7.6e-11 68_[+1]_2 chrXIII:463349-463878 8.5e-11 40_[-1]_30 chrII:266211-266661 1.2e-10 42_[-1]_28 chrXIII:420283-420864 1.2e-10 56_[+1]_14 chrXIII:258977-259380 1.4e-10 21_[+1]_49 chrVII:774163-774711 1.5e-10 12_[-1]_58 chrXIV:96005-96540 2.4e-10 10_[+1]_60 chrVII:823350-823731 2.4e-10 43_[-1]_27 chrIX:248491-249393 2.6e-10 17_[-1]_53 chrXIII:480410-480797 2.6e-10 59_[+1]_11 chrIV:83441-83816 2.6e-10 18_[-1]_52 chrVIII:133971-134773 3.6e-10 48_[-1]_22 chrXIII:747663-748145 4e-10 29_[+1]_41 chrXI:513075-513603 5.4e-10 34_[+1]_36 chrIV:884290-884636 6.6e-10 58_[-1]_12 chrXVI:856716-857184 7.3e-10 52_[-1]_18 chrV:354709-355292 7.3e-10 33_[-1]_37 chrXV:663489-664215 9.8e-10 1_[+1]_69 chrXII:975790-976175 9.8e-10 42_[+1]_28 chrVII:541725-542158 1.2e-09 8_[-1]_62 chrXIII:290585-291133 1.2e-09 41_[-1]_29 chrX:374188-374288 1.3e-09 19_[+1]_51 chrIII:90867-91113 1.6e-09 10_[-1]_60 chrI:180940-181520 1.6e-09 52_[-1]_18 chrVII:730964-731441 1.6e-09 36_[-1]_34 chrII:9359-9895 2.7e-09 67_[-1]_3 chrXV:300880-301450 2.9e-09 61_[-1]_9 chrIV:619702-620189 3.5e-09 65_[+1]_5 chrIV:980724-981169 4.1e-09 69_[+1]_1 chrXI:578731-579418 4.8e-09 14_[-1]_56 chrXVI:744088-744578 4.8e-09 50_[-1]_20 chrVII:779414-779930 1.3e-08 43_[-1]_27 chrVIII:475503-475921 1.8e-08 35_[+1]_35 chrXIII:807951-808544 1.9e-08 40_[+1]_30 chrII:347411-347932 7.9e-08 43_[-1]_27 chrVIII:466813-467256 1e-07 55_[-1]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGVYCNMDVSSRGRWTCGAACC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAAYGVYCNMDVSSRGRWTCGAACC width=30 seqs=52 chrV:550959-551559 ( 68) AAAAAAAATGGTCTCTAGCGGGATCGAACC 1 chrXV:281986-282419 ( 61) AAAAGAAATGCGCAAGCCCGGAATCGAACC 1 chrX:396540-396640 ( 31) AAAAGAAATGCGCAAGCCCGGAATCGAACC 1 chrXII:1051935-1052200 ( 46) AAAAATAATGGTCTCTAGCGGGATCGAACC 1 chrXIV:569613-570155 ( 25) AAAAAGAATGGTCTCTAGCGGGATCGAACC 1 chrV:443062-443375 ( 26) AAAAAATATGGTCTCTAGCGGGATCGAACC 1 chrX:531584-531684 ( 19) AAAGAAACTGCGCAAGCCCGGAATCGAACC 1 chrV:438503-439002 ( 50) AAAAAAATTGATTTCGCCCAGGATCGAACT 1 chrXV:976281-976741 ( 11) AAAAATATTGCTCCAGGGGAGGTTCGAACT 1 chrIV:1016961-1017481 ( 28) AAAAGAAACTCCGAAGCGGGGAGTCGAACC 1 chrVII:828417-828977 ( 68) AAAAAAAGCACTCACGATGGGGGTCGAACC 1 chrV:130805-131399 ( 22) AAAAAAATAGGTCTTACCCGGATTCGAACC 1 chrX:378245-378345 ( 63) CAAAAAATTGATTTCGCCCAGGATCGAACT 1 chrII:644962-645438 ( 67) AAAAATAACTCCGATACGGGGAGTCGAACC 1 chrXIII:320977-321320 ( 41) ATAAAAAATGGACGAGTCCGGAATCGAACC 1 chrXIII:572629-573150 ( 36) AAAAAATGTGCTCCAGGGGAGGTTCGAACT 1 chrV:288114-288719 ( 69) AAAAAAAACGACACCAGCAGGATTTGAACC 1 chrXIII:463349-463878 ( 41) AAAAAAATCTCCGCGACGGGGAATTGAACC 1 chrII:266211-266661 ( 43) CAAAAAAATGCTTCCAATCGGATTTGAACC 1 chrXIII:420283-420864 ( 57) GATAAAAATGATTTCGCCCAGGATCGAACT 1 chrXIII:258977-259380 ( 22) AAAAATAACGACAACTGCAGGACTCGAACC 1 chrVII:774163-774711 ( 13) AAAAAATTTGGACGAGTCCGGAATCGAACC 1 chrXIV:96005-96540 ( 11) AAAAAATTTGAGCGGTACGAGAATCGAACC 1 chrVII:823350-823731 ( 44) TCAAAAAATGATTTCGCCCAGGATCGAACT 1 chrIX:248491-249393 ( 18) AAAAATAACGACACCAGCAGGATTTGAACC 1 chrXIII:480410-480797 ( 60) AAAAAAGAAGCCCTGTAGGGGGCTCGAACC 1 chrIV:83441-83816 ( 19) ATTAAACTTGCGCAAGCCCGGAATCGAACC 1 chrVIII:133971-134773 ( 49) GCAAAAAAAGGTCCTACCCGGATTCGAACC 1 chrXIII:747663-748145 ( 30) CTAAAAAACACTCACGATGGGGGTCGAACC 1 chrXI:513075-513603 ( 35) TAAAAAATCTCCGCGACGGGGAATTGAACC 1 chrIV:884290-884636 ( 59) AGAGAAAGTGCTCGAGGTGGGGTTTGAACC 1 chrXVI:856716-857184 ( 53) AATTAAAATGGACGAGTCCGGAATCGAACC 1 chrV:354709-355292 ( 34) AAAAAGTACTCCGATACGGGGAGTCGAACC 1 chrXV:663489-664215 ( 2) CTTAAAAATGATTTCGCCCAGGATCGAACT 1 chrXII:975790-976175 ( 43) AAAATAAACGACCCCAGTGAGGGTTGAACT 1 chrVII:541725-542158 ( 9) AAAGAACACTCCGATACGGGGAGTCGAACC 1 chrXIII:290585-291133 ( 42) AAAGAAGACTCCGATACGGGGAGTCGAACC 1 chrX:374188-374288 ( 20) AAACAAAGCACTCACGATGGGGGTCGAACC 1 chrIII:90867-91113 ( 11) AAAAATAATGGTTGCTAAGAGATTCGAACT 1 chrI:180940-181520 ( 53) AAAAATAATGGTTGCTAAGAGATTCGAACT 1 chrVII:730964-731441 ( 37) GCAAAAAACGACCCCAGTGAGGGTTGAACT 1 chrII:9359-9895 ( 68) AAAAATACTGAAGGATGCGAGGTTCGAACT 1 chrXV:300880-301450 ( 62) TAAAAAAGGGGGCGAGCTGGGAATTGAACC 1 chrIV:619702-620189 ( 66) TAAAAAATCTTCCCCGCCAGGACTTGAACC 1 chrIV:980724-981169 ( 70) GGTAAAAACGACAACTGCAGGACTCGAACC 1 chrXI:578731-579418 ( 15) GTAAAGAACTCCTCATAGGGGGCTCGAACC 1 chrXVI:744088-744578 ( 51) AAAAATTTTGCCACCTGTCAGAATTGAACT 1 chrVII:779414-779930 ( 44) AGTAATCTTGAGCGGTACGAGAATCGAACC 1 chrVIII:475503-475921 ( 36) TGTTAAAATGTTCCAACCGAGGATCGAACT 1 chrXIII:807951-808544 ( 41) TGAAGGGAAGGTCCCACCCGGATTCGAACT 1 chrII:347411-347932 ( 44) AATATTACTGAAGGATGCGAGGTTCGAACT 1 chrVIII:466813-467256 ( 56) CGGTATAATGCCACCTGCCAGAATTGAACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGVYCNMDVSSRGRWTCGAACC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 8.55712 E= 6.3e-183 120 -104 -104 -139 127 -178 -78 -165 145 -1234 -336 -97 148 -336 -136 -239 155 -1234 -136 -297 120 -1234 -136 -39 135 -178 -178 -139 103 -178 -104 -39 -197 81 -336 88 -239 -1234 196 -80 -7 110 34 -297 -165 81 -55 48 -139 145 -19 -80 -17 64 10 -51 3 128 -104 -139 -7 -1234 103 3 -17 110 34 -239 -297 134 54 -80 -165 110 128 -1234 20 -1234 173 -1234 -1234 -1234 234 -1234 93 -1234 110 -1234 61 -104 -4 -27 -1234 -1234 -1234 173 -1234 196 -1234 -39 -1234 -1234 234 -1234 173 -1234 -1234 -1234 173 -1234 -1234 -1234 -1234 234 -1234 -1234 -1234 177 -1234 11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGVYCNMDVSSRGRWTCGAACC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 52 E= 6.3e-183 0.692308 0.096154 0.096154 0.115385 0.730769 0.057692 0.115385 0.096154 0.826923 0.000000 0.019231 0.153846 0.846154 0.019231 0.076923 0.057692 0.884615 0.000000 0.076923 0.038462 0.692308 0.000000 0.076923 0.230769 0.769231 0.057692 0.057692 0.115385 0.615385 0.057692 0.096154 0.230769 0.076923 0.346154 0.019231 0.557692 0.057692 0.000000 0.769231 0.173077 0.288462 0.423077 0.250000 0.038462 0.096154 0.346154 0.134615 0.423077 0.115385 0.538462 0.173077 0.173077 0.269231 0.307692 0.211538 0.211538 0.307692 0.480769 0.096154 0.115385 0.288462 0.000000 0.403846 0.307692 0.269231 0.423077 0.250000 0.057692 0.038462 0.500000 0.288462 0.173077 0.096154 0.423077 0.480769 0.000000 0.346154 0.000000 0.653846 0.000000 0.000000 0.000000 1.000000 0.000000 0.576923 0.000000 0.423077 0.000000 0.461538 0.096154 0.192308 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.769231 0.000000 0.230769 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.673077 0.000000 0.326923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAAYGVYCNMDVSSRGRWTCGAACC MEME-1 regular expression -------------------------------------------------------------------------------- AAAAA[AT]A[AT][TC]G[CAG][TC]C[CAGT][CA][GTA][CAG][CG][GC][GA]G[AG][AT]T[CT]GAAC[CT] -------------------------------------------------------------------------------- Time 352.10 secs. ******************************************************************************** ******************************************************************************** MOTIF YARTCYKDCGCCTTAACCAAYYKGSCMA MEME-2 width = 28 sites = 27 llr = 593 E-value = 1.0e-091 ******************************************************************************** -------------------------------------------------------------------------------- Motif YARTCYKDCGCCTTAACCAAYYKGSCMA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1a4:1214::::1:993:671:1:1:37 pos.-specific C 3::2731:7:aa::::7a33631:3971 probability G ::621153:a::1:1:::1::15951:: matrix T 5::6:4323:::8a:::::13631:::1 bits 2.3 * * 2.1 *** * 1.9 *** * * * 1.6 * *** * * * * Relative 1.4 * **** ***** * * Entropy 1.2 ** * **** ***** * ** (31.7 bits) 0.9 ** * ********** **** 0.7 ** * ************** ***** 0.5 **** * ******************** 0.2 ***** ********************** 0.0 ---------------------------- Multilevel TAGTCTGACGCCTTAACCAACTGGGCCA consensus C AC CTGT A CCTCT C A sequence G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARTCYKDCGCCTTAACCAAYYKGSCMA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------- chrXI:74440-74821 - 51 4.65e-14 TTGCGATTAA CAGTCGCACGCCTTAACCAACTTGGCCA TGGAGTCTAA chrXV:228123-228516 - 69 4.65e-14 TTAA CAGTCGCACGCCTTAACCAACTTGGCCA TGGAGTCTAA chrIII:127587-127902 - 29 4.65e-14 TTGCGATTAA CAGTCGCACGCCTTAACCAACTTGGCCA TGGAGTCATT chrXIV:632438-632787 - 44 4.65e-14 TTGCGATTAA CAGTCGCACGCCTTAACCAACTTGGCCA TGGAGTCACT chrXIV:602102-602566 - 35 2.04e-13 CCCGCGTTAT TAGCACGGTGCCTTAACCAACTGGGCCA AGAGACCATT chrXIV:569613-570155 + 72 2.04e-13 CCCGCGTTAT TAGCACGGTGCCTTAACCAACTGGGCCA A chrV:443062-443375 + 73 2.04e-13 CCCGCGTTAT TAGCACGGTGCCTTAACCAACTGGGCCA chrIV:667670-668487 + 18 2.04e-13 CCCGCGTTAT TAGCACGGTGCCTTAACCAACTGGGCCA AGAGACCAAT chrX:617733-617833 - 46 2.15e-12 AAATCCACCT AAATCTGACGCCTTAAACCACTCGGCCA AACTCCCATT chrXII:592280-592977 + 7 2.15e-12 CCACCT AAATCTGACGCCTTAAACCACTCGGCCA AACTCCCATT chrX:523730-523830 + 26 2.76e-12 AAAAGATTTC TAATCTTTCGCCTTAACCACTCGGCCAA GTTGCCTTTA chrIV:1305438-1305830 - 52 2.76e-12 AAAAGATTTC TAATCTTTCGCCTTAACCACTCGGCCAA GTTGCCTTAA chrIV:437571-438035 - 25 2.76e-12 AAAAGATTTC TAATCTTTCGCCTTAACCACTCGGCCAA GTTGCCTTAC chrXII:167771-168230 + 42 2.76e-12 AAAAGATTTC TAATCTTTCGCCTTAACCACTCGGCCAA GTTGCCATAT chrXV:274478-274975 - 3 1.59e-10 GAGGAAATAG CAGGGCATCGCCTTAACCACTCGGCCAC TG chrII:9359-9895 - 13 1.88e-10 AACAGATCTT AAGTCTGCCGCCTTAGACCACTCGGCCA ACCCTCCACG chrV:438503-439002 - 5 3.54e-10 TTCTGCGTGT TAAGCAGATGCCATAACCGACTAGACCA CGAA chrX:378245-378345 - 18 3.54e-10 TTCTGCGTGT TAAGCAGATGCCATAACCGACTAGACCA CGAAACCTAT chrXV:663489-664215 + 49 3.54e-10 TTCTGCGTGT TAAGCAGATGCCATAACCGACTAGACCA CGAAACCACT chrX:233662-233762 - 61 1.27e-09 TCCTGGTTCG TAGCCAGACGCCGTGACCATTGGGCCAC GAGGAACAAG chrXI:490750-491198 - 50 1.27e-09 TTCTGGTTCG TAGCCAGACGCCGTGACCATTGGGCCAC GAGGAACAAG chrXV:353916-354301 + 22 1.75e-09 TCCACATTAC TAGTGTGGCGCCTTACCAACTTGGCCAT AGAAGCAGTA chrXIII:837719-838215 - 19 2.11e-09 TGGTAAATTA CAGTCTTGCGCCTTAAACCAACTTGGCT ACCGAGAGTC chrX:354037-354137 - 44 2.11e-09 TGGTAAATTA CAGTCTTGCGCCTTAAACCAACTTGGCT ACCGAGAGTG chrX:542790-542890 + 34 2.11e-09 TGATAAATTA CAGTCTTGCGCCTTAAACCAACTTGGCT ACCGAGAGTA chrII:326572-327150 + 20 2.24e-09 TTCGCCGTGT AAAGGCGACGTCTTGAACCACTGGACCA TTGGACCCGG chrIV:1150711-1151189 + 8 8.08e-09 GGAAATA GCAGGCATCGCCTTAACCACTCGGCCAC TGGGACTGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARTCYKDCGCCTTAACCAAYYKGSCMA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXI:74440-74821 4.6e-14 50_[-2]_22 chrXV:228123-228516 4.6e-14 68_[-2]_4 chrIII:127587-127902 4.6e-14 28_[-2]_44 chrXIV:632438-632787 4.6e-14 43_[-2]_29 chrXIV:602102-602566 2e-13 34_[-2]_38 chrXIV:569613-570155 2e-13 71_[+2]_1 chrV:443062-443375 2e-13 72_[+2] chrIV:667670-668487 2e-13 17_[+2]_55 chrX:617733-617833 2.2e-12 45_[-2]_27 chrXII:592280-592977 2.2e-12 6_[+2]_66 chrX:523730-523830 2.8e-12 25_[+2]_47 chrIV:1305438-1305830 2.8e-12 51_[-2]_21 chrIV:437571-438035 2.8e-12 24_[-2]_48 chrXII:167771-168230 2.8e-12 41_[+2]_31 chrXV:274478-274975 1.6e-10 2_[-2]_70 chrII:9359-9895 1.9e-10 12_[-2]_60 chrV:438503-439002 3.5e-10 4_[-2]_68 chrX:378245-378345 3.5e-10 17_[-2]_55 chrXV:663489-664215 3.5e-10 48_[+2]_24 chrX:233662-233762 1.3e-09 60_[-2]_12 chrXI:490750-491198 1.3e-09 49_[-2]_23 chrXV:353916-354301 1.7e-09 21_[+2]_51 chrXIII:837719-838215 2.1e-09 18_[-2]_54 chrX:354037-354137 2.1e-09 43_[-2]_29 chrX:542790-542890 2.1e-09 33_[+2]_39 chrII:326572-327150 2.2e-09 19_[+2]_53 chrIV:1150711-1151189 8.1e-09 7_[+2]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARTCYKDCGCCTTAACCAAYYKGSCMA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YARTCYKDCGCCTTAACCAAYYKGSCMA width=28 seqs=27 chrXI:74440-74821 ( 51) CAGTCGCACGCCTTAACCAACTTGGCCA 1 chrXV:228123-228516 ( 69) CAGTCGCACGCCTTAACCAACTTGGCCA 1 chrIII:127587-127902 ( 29) CAGTCGCACGCCTTAACCAACTTGGCCA 1 chrXIV:632438-632787 ( 44) CAGTCGCACGCCTTAACCAACTTGGCCA 1 chrXIV:602102-602566 ( 35) TAGCACGGTGCCTTAACCAACTGGGCCA 1 chrXIV:569613-570155 ( 72) TAGCACGGTGCCTTAACCAACTGGGCCA 1 chrV:443062-443375 ( 73) TAGCACGGTGCCTTAACCAACTGGGCCA 1 chrIV:667670-668487 ( 18) TAGCACGGTGCCTTAACCAACTGGGCCA 1 chrX:617733-617833 ( 46) AAATCTGACGCCTTAAACCACTCGGCCA 1 chrXII:592280-592977 ( 7) AAATCTGACGCCTTAAACCACTCGGCCA 1 chrX:523730-523830 ( 26) TAATCTTTCGCCTTAACCACTCGGCCAA 1 chrIV:1305438-1305830 ( 52) TAATCTTTCGCCTTAACCACTCGGCCAA 1 chrIV:437571-438035 ( 25) TAATCTTTCGCCTTAACCACTCGGCCAA 1 chrXII:167771-168230 ( 42) TAATCTTTCGCCTTAACCACTCGGCCAA 1 chrXV:274478-274975 ( 3) CAGGGCATCGCCTTAACCACTCGGCCAC 1 chrII:9359-9895 ( 13) AAGTCTGCCGCCTTAGACCACTCGGCCA 1 chrV:438503-439002 ( 5) TAAGCAGATGCCATAACCGACTAGACCA 1 chrX:378245-378345 ( 18) TAAGCAGATGCCATAACCGACTAGACCA 1 chrXV:663489-664215 ( 49) TAAGCAGATGCCATAACCGACTAGACCA 1 chrX:233662-233762 ( 61) TAGCCAGACGCCGTGACCATTGGGCCAC 1 chrXI:490750-491198 ( 50) TAGCCAGACGCCGTGACCATTGGGCCAC 1 chrXV:353916-354301 ( 22) TAGTGTGGCGCCTTACCAACTTGGCCAT 1 chrXIII:837719-838215 ( 19) CAGTCTTGCGCCTTAAACCAACTTGGCT 1 chrX:354037-354137 ( 44) CAGTCTTGCGCCTTAAACCAACTTGGCT 1 chrX:542790-542890 ( 34) CAGTCTTGCGCCTTAAACCAACTTGGCT 1 chrII:326572-327150 ( 20) AAAGGCGACGTCTTGAACCACTGGACCA 1 chrIV:1150711-1151189 ( 8) GCAGGCATCGCCTTAACCACTCGGCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARTCYKDCGCCTTAACCAAYYKGSCMA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 43800 bayes= 11.2322 E= 1.0e-091 -103 58 -241 78 167 -241 -1140 -1140 43 -1140 158 -1140 -1140 17 17 88 -103 183 -42 -1140 -71 39 -42 43 -203 -42 139 -22 56 -241 58 -44 -1140 191 -1140 -22 -1140 -1140 234 -1140 -1140 228 -1140 -303 -1140 234 -1140 -1140 -144 -1140 -142 143 -1140 -1140 -1140 173 156 -1140 -83 -1140 161 -241 -241 -1140 -22 191 -1140 -1140 -303 228 -1140 -1140 106 39 -83 -1140 114 39 -1140 -203 -144 149 -1140 14 -1140 75 -142 97 -144 -83 139 -22 -1140 -1140 217 -144 -103 75 139 -1140 -1140 217 -83 -1140 14 175 -1140 -1140 122 -42 -1140 -103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARTCYKDCGCCTTAACCAAYYKGSCMA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 27 E= 1.0e-091 0.148148 0.296296 0.037037 0.518519 0.962963 0.037037 0.000000 0.000000 0.407407 0.000000 0.592593 0.000000 0.000000 0.222222 0.222222 0.555556 0.148148 0.703704 0.148148 0.000000 0.185185 0.259259 0.148148 0.407407 0.074074 0.148148 0.518519 0.259259 0.444444 0.037037 0.296296 0.222222 0.000000 0.740741 0.000000 0.259259 0.000000 0.000000 1.000000 0.000000 0.000000 0.962963 0.000000 0.037037 0.000000 1.000000 0.000000 0.000000 0.111111 0.000000 0.074074 0.814815 0.000000 0.000000 0.000000 1.000000 0.888889 0.000000 0.111111 0.000000 0.925926 0.037037 0.037037 0.000000 0.259259 0.740741 0.000000 0.000000 0.037037 0.962963 0.000000 0.000000 0.629630 0.259259 0.111111 0.000000 0.666667 0.259259 0.000000 0.074074 0.111111 0.555556 0.000000 0.333333 0.000000 0.333333 0.074074 0.592593 0.111111 0.111111 0.518519 0.259259 0.000000 0.000000 0.888889 0.111111 0.148148 0.333333 0.518519 0.000000 0.000000 0.888889 0.111111 0.000000 0.333333 0.666667 0.000000 0.000000 0.703704 0.148148 0.000000 0.148148 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARTCYKDCGCCTTAACCAAYYKGSCMA MEME-2 regular expression -------------------------------------------------------------------------------- [TC]A[GA][TCG]C[TC][GT][AGT][CT]GCCTTAA[CA]C[AC][AC][CT][TC][GT]G[GC]C[CA]A -------------------------------------------------------------------------------- Time 676.01 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTADCGCGTCWSVCTYNYAMBSWGRAGRT MEME-3 width = 30 sites = 25 llr = 521 E-value = 9.5e-066 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTADCGCGTCWSVCTYNYAMBSWGRAGRT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::2a223:2:14:4::12:a6::2269:6: pos.-specific C :21::6:91261628:424:3342:::::3 probability G a6::427:7::242:::2:::26174194: matrix T :27:4::1:822:12a536::5:41::::7 bits 2.3 * 2.1 * 1.9 * * * 1.6 * * ** * Relative 1.4 * * * * ** * * ** Entropy 1.2 * * ** * * ** * * ** (30.1 bits) 0.9 * * ***** * ** ** * ****** 0.7 **** ****** * ** *** * ****** 0.5 *********** * *** ***** ****** 0.2 *********** ***** ***** ****** 0.0 ------------------------------ Multilevel GGTAGCGCGTCACACTTTTAATGTGAAGAT consensus C TAA ACTTGC CAC CCCAAG GC sequence A G G C G C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTADCGCGTCWSVCTYNYAMBSWGRAGRT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrX:538433-538533 + 45 3.35e-13 TTGGCGTAAT GGTAACGCGTCTCCCTCCTAAGGAGAAGAC TGCGGGTTCG chrXIII:747663-748145 - 64 2.81e-12 GCGTAAT GGCAACGCGTCTGACTTCTAATCAGAAGAT TATGGGTTCG chrX:374188-374288 - 54 2.81e-12 GTGGCGTAAT GGCAACGCGTCTGACTTCTAATCAGAAGAT TATGGGTTCG chrXIII:131627-132118 - 29 2.81e-12 GTGGCGTAAT GGCAACGCGTCTGACTTCTAATCAGAAGAT TATGGGTTCG chrII:266211-266661 + 9 4.21e-12 GCCAAGTT GGTAAGGCGCCACACTAGTAATGTGGAGAT CATCGGTTCA chrXIII:290585-291133 + 9 6.23e-12 GTGTAACG GCTATCACATCACGCTTTCACCGTGGAGAC CGGGGTTCGA chrII:644962-645438 + 34 6.23e-12 TAGTGTAACG GCTATCACATCACGCTTTCACCGTGGAGAC CGGGGTTCGA chrV:354709-355292 + 1 6.23e-12 . GCTATCACATCACGCTTTCACCGTGGAGAC CGGGGTTCGA chrXI:140673-141490 - 12 6.23e-12 TAGTGTAACG GCTATCACATCACGCTTTCACCGTGGAGAC CGGGGTTCGA chrIV:1175615-1176037 + 70 8.02e-12 TAGCTCAGTA GGAAGAGCGTCAGTCTCATAATCTGAAGGT C chrXIII:572629-573150 - 70 8.02e-12 A GGAAGAGCGTCAGTCTCATAATCTGAAGGT CGAGAGTTCG chrX:422635-422735 + 56 8.02e-12 TAGCTCAGTA GGAAGAGCGTCAGTCTCATAATCTGAAGGT CGAGAGTTCG chrVIII:466813-467256 + 22 1.03e-11 TTAGCTTAGT GGTAGAGCGTTGCACTTGTAATGCAAAGGT CGCTAGTTCA chrVII:1004047-1004397 + 60 1.03e-11 TTAGCTTAGT GGTAGAGCGTTGCACTTGTAATGCAAAGGT CGTTAGTTCA chrXVI:744088-744578 + 17 1.03e-11 TTAGCTTAGT GGTAGAGCGTTGCACTTGTAATGCAAAGGT CGTTAGTTCA chrIV:1016961-1017481 - 61 6.81e-11 TAGTGTAACG GCTATCACATCACGTTCTCACCGTGGAGAC CGGGGTTCGA chrXVI:581880-582236 + 71 8.33e-11 TGGCGCAATC GGTAGCGCGTATGACTCTTAATCATAAGGT chrVIII:475503-475921 - 70 7.04e-10 G GCTATCACGTTGCCTTCACACGGCAAAGGT CCCGAGTTCG chrXIV:96005-96540 - 44 4.69e-09 TAGTGTAGTG GTTATCATCCCACCCTTCCAAGGTGGGGAC ACGGGTTCGA chrVII:779414-779930 + 11 4.69e-09 TAGTGTAGTG GTTATCATCCCACCCTTCCAAGGTGGGGAC ACGGGTTCGA chrXVI:856716-857184 + 19 5.30e-09 TGGCGTAGTC GGTAGCGCGCTCCCTTAGCATGGGAGAGGT CTCCGGTTCG chrX:517659-517759 - 22 8.02e-09 GTGGCGCAGT GGAAGCGCGCAGGGCTCATAACCCTGATGT CCTCGGATCG chrXIII:837719-838215 + 71 1.39e-08 GAAATCTTGA GATCGGGCGTTCGACTCGCCCCCGGGAGAT chrVII:730964-731441 + 3 1.99e-08 TG GTTAAGGCGTGCGACTGTTAATCGCAAGAT CGTGAGTTCA chrVII:823350-823731 + 10 2.09e-08 GTCTAGTCG GTTATGGCATCTGCTTAACACGCAGAACGT CCCCAGTTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTADCGCGTCWSVCTYNYAMBSWGRAGRT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:538433-538533 3.4e-13 44_[+3]_26 chrXIII:747663-748145 2.8e-12 63_[-3]_7 chrX:374188-374288 2.8e-12 53_[-3]_17 chrXIII:131627-132118 2.8e-12 28_[-3]_42 chrII:266211-266661 4.2e-12 8_[+3]_62 chrXIII:290585-291133 6.2e-12 8_[+3]_62 chrII:644962-645438 6.2e-12 33_[+3]_37 chrV:354709-355292 6.2e-12 [+3]_70 chrXI:140673-141490 6.2e-12 11_[-3]_59 chrIV:1175615-1176037 8e-12 69_[+3]_1 chrXIII:572629-573150 8e-12 69_[-3]_1 chrX:422635-422735 8e-12 55_[+3]_15 chrVIII:466813-467256 1e-11 21_[+3]_49 chrVII:1004047-1004397 1e-11 59_[+3]_11 chrXVI:744088-744578 1e-11 16_[+3]_54 chrIV:1016961-1017481 6.8e-11 60_[-3]_10 chrXVI:581880-582236 8.3e-11 70_[+3] chrVIII:475503-475921 7e-10 69_[-3]_1 chrXIV:96005-96540 4.7e-09 43_[-3]_27 chrVII:779414-779930 4.7e-09 10_[+3]_60 chrXVI:856716-857184 5.3e-09 18_[+3]_52 chrX:517659-517759 8e-09 21_[-3]_49 chrXIII:837719-838215 1.4e-08 70_[+3] chrVII:730964-731441 2e-08 2_[+3]_68 chrVII:823350-823731 2.1e-08 9_[+3]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTADCGCGTCWSVCTYNYAMBSWGRAGRT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTADCGCGTCWSVCTYNYAMBSWGRAGRT width=30 seqs=25 chrX:538433-538533 ( 45) GGTAACGCGTCTCCCTCCTAAGGAGAAGAC 1 chrXIII:747663-748145 ( 64) GGCAACGCGTCTGACTTCTAATCAGAAGAT 1 chrX:374188-374288 ( 54) GGCAACGCGTCTGACTTCTAATCAGAAGAT 1 chrXIII:131627-132118 ( 29) GGCAACGCGTCTGACTTCTAATCAGAAGAT 1 chrII:266211-266661 ( 9) GGTAAGGCGCCACACTAGTAATGTGGAGAT 1 chrXIII:290585-291133 ( 9) GCTATCACATCACGCTTTCACCGTGGAGAC 1 chrII:644962-645438 ( 34) GCTATCACATCACGCTTTCACCGTGGAGAC 1 chrV:354709-355292 ( 1) GCTATCACATCACGCTTTCACCGTGGAGAC 1 chrXI:140673-141490 ( 12) GCTATCACATCACGCTTTCACCGTGGAGAC 1 chrIV:1175615-1176037 ( 70) GGAAGAGCGTCAGTCTCATAATCTGAAGGT 1 chrXIII:572629-573150 ( 70) GGAAGAGCGTCAGTCTCATAATCTGAAGGT 1 chrX:422635-422735 ( 56) GGAAGAGCGTCAGTCTCATAATCTGAAGGT 1 chrVIII:466813-467256 ( 22) GGTAGAGCGTTGCACTTGTAATGCAAAGGT 1 chrVII:1004047-1004397 ( 60) GGTAGAGCGTTGCACTTGTAATGCAAAGGT 1 chrXVI:744088-744578 ( 17) GGTAGAGCGTTGCACTTGTAATGCAAAGGT 1 chrIV:1016961-1017481 ( 61) GCTATCACATCACGTTCTCACCGTGGAGAC 1 chrXVI:581880-582236 ( 71) GGTAGCGCGTATGACTCTTAATCATAAGGT 1 chrVIII:475503-475921 ( 70) GCTATCACGTTGCCTTCACACGGCAAAGGT 1 chrXIV:96005-96540 ( 44) GTTATCATCCCACCCTTCCAAGGTGGGGAC 1 chrVII:779414-779930 ( 11) GTTATCATCCCACCCTTCCAAGGTGGGGAC 1 chrXVI:856716-857184 ( 19) GGTAGCGCGCTCCCTTAGCATGGGAGAGGT 1 chrX:517659-517759 ( 22) GGAAGCGCGCAGGGCTCATAACCCTGATGT 1 chrXIII:837719-838215 ( 71) GATCGGGCGTTCGACTCGCCCCCGGGAGAT 1 chrVII:730964-731441 ( 3) GTTAAGGCGTGCGACTGTTAATCGCAAGAT 1 chrVII:823350-823731 ( 10) GTTATGGCATCTGCTTAACACGCAGAACGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTADCGCGTCWSVCTYNYAMBSWGRAGRT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 10.4421 E= 9.5e-066 -1129 -1129 234 -1129 -291 28 150 -92 -92 -72 -1129 125 167 -230 -1129 -1129 -33 -1129 102 25 -33 160 -31 -1129 8 -1129 178 -1129 -1129 222 -1129 -192 -33 -130 178 -1129 -1129 2 -1129 140 -192 169 -230 -33 54 -72 2 -33 -1129 150 115 -1129 40 28 28 -133 -1129 209 -1129 -92 -1129 -1129 -1129 173 -133 86 -230 67 -33 28 28 -11 -1129 115 -1129 89 167 -230 -1129 -1129 108 69 -1129 -291 -1129 50 28 67 -1129 115 150 -1129 -33 2 -72 54 -60 -230 178 -192 89 -1129 115 -1129 161 -1129 -130 -1129 -1129 -230 222 -291 89 -1129 115 -1129 -1129 69 -1129 117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTADCGCGTCWSVCTYNYAMBSWGRAGRT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 25 E= 9.5e-066 0.000000 0.000000 1.000000 0.000000 0.040000 0.240000 0.560000 0.160000 0.160000 0.120000 0.000000 0.720000 0.960000 0.040000 0.000000 0.000000 0.240000 0.000000 0.400000 0.360000 0.240000 0.600000 0.160000 0.000000 0.320000 0.000000 0.680000 0.000000 0.000000 0.920000 0.000000 0.080000 0.240000 0.080000 0.680000 0.000000 0.000000 0.200000 0.000000 0.800000 0.080000 0.640000 0.040000 0.240000 0.440000 0.120000 0.200000 0.240000 0.000000 0.560000 0.440000 0.000000 0.400000 0.240000 0.240000 0.120000 0.000000 0.840000 0.000000 0.160000 0.000000 0.000000 0.000000 1.000000 0.120000 0.360000 0.040000 0.480000 0.240000 0.240000 0.240000 0.280000 0.000000 0.440000 0.000000 0.560000 0.960000 0.040000 0.000000 0.000000 0.640000 0.320000 0.000000 0.040000 0.000000 0.280000 0.240000 0.480000 0.000000 0.440000 0.560000 0.000000 0.240000 0.200000 0.120000 0.440000 0.200000 0.040000 0.680000 0.080000 0.560000 0.000000 0.440000 0.000000 0.920000 0.000000 0.080000 0.000000 0.000000 0.040000 0.920000 0.040000 0.560000 0.000000 0.440000 0.000000 0.000000 0.320000 0.000000 0.680000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTADCGCGTCWSVCTYNYAMBSWGRAGRT MEME-3 regular expression -------------------------------------------------------------------------------- G[GC]TA[GTA][CA][GA]C[GA][TC][CT][ATG][CG][ACG]CT[TC][TACG][TC]A[AC][TCG][GC][TAC][GA][AG]AG[AG][TC] -------------------------------------------------------------------------------- Time 991.91 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:326572-327150 2.20e-09 19_[+2(2.24e-09)]_53 chrVIII:358282-358774 5.79e-03 25_[-3(8.94e-05)]_45 chrXIV:784063-784317 7.29e-01 100 chrVII:115327-115752 5.57e-05 15_[+3(8.14e-05)]_7_[+1(9.06e-06)]_\ 18 chrXI:355288-357155 7.21e-01 100 chrI:141608-143665 3.14e-01 100 chrIV:1269875-1271071 2.40e-01 100 chrXVI:821607-822358 5.87e-01 100 chrXIII:660264-662289 3.06e-01 100 chrVII:440476-441143 5.02e-01 100 chrVII:345660-346740 5.06e-01 100 chrXI:490750-491198 1.10e-08 49_[-2(1.27e-09)]_23 chrIV:520625-521104 4.87e-01 100 chrIII:48671-50237 7.79e-01 100 chrXVI:404462-407849 8.88e-01 100 chrIV:884290-884636 5.49e-06 58_[-1(6.65e-10)]_12 chrXII:84055-84374 4.72e-01 100 chrIX:210521-211451 1.61e-01 100 chrXIV:560419-560815 8.29e-01 100 chrIV:722397-722879 9.14e-01 100 chrXII:514068-514829 3.57e-01 100 chrIX:197322-197813 8.88e-01 100 chrII:197170-198343 4.54e-01 100 chrXI:551895-552694 4.93e-01 100 chrXVI:188672-189066 1.07e-01 100 chrI:222861-223121 7.08e-01 100 chrXV:741957-742849 4.03e-01 100 chrXII:231391-234254 1.70e-01 100 chrVII:805178-805559 5.77e-01 100 chrXV:853968-854800 1.25e-01 100 chrXIII:170128-171298 6.91e-01 100 chrV:53546-53856 7.35e-01 100 chrXVI:581880-582236 3.57e-08 70_[+3(8.33e-11)] chrII:372997-375802 6.33e-01 100 chrII:36256-36859 2.20e-01 100 chrXV:671020-671568 6.67e-01 100 chrIV:600699-602337 5.32e-01 100 chrXIII:752989-754284 6.46e-01 100 chrVI:191170-191771 4.52e-01 100 chrXII:809265-815743 6.72e-01 100 chrVIII:237757-238151 3.34e-01 100 chrX:607260-607360 6.73e-01 100 chrVII:254147-254751 6.20e-01 100 chrVIII:451193-453134 5.45e-01 100 chrXII:975790-976175 7.09e-06 42_[+1(9.82e-10)]_28 chrXIII:272194-272628 8.51e-01 100 chrXIV:217380-218135 8.02e-02 100 chrXIV:662000-662531 9.38e-01 100 chrVII:323441-324120 9.78e-01 100 chrXVI:744088-744578 3.40e-13 16_[+3(1.03e-11)]_4_[-1(4.83e-09)]_\ 20 chrXIII:146474-147733 1.34e-02 53_[-3(1.51e-05)]_17 chrIV:1330270-1330940 2.45e-01 100 chrXV:571711-572127 9.93e-01 100 chrXIII:258977-259380 4.95e-07 21_[+1(1.35e-10)]_49 chrVII:823350-823731 3.90e-11 9_[+3(2.09e-08)]_4_[-1(2.35e-10)]_\ 27 chrXII:65365-66089 1.93e-01 100 chrX:422635-422735 6.80e-09 55_[+3(8.02e-12)]_15 chrVI:101157-102126 3.68e-01 100 chrXVI:282075-282975 3.25e-01 100 chrV:550959-551559 6.25e-10 67_[+1(6.88e-14)]_3 chrXI:382143-382517 1.44e-01 100 chrXII:919586-925656 1.96e-01 100 chrXII:167771-168230 1.24e-09 41_[+2(2.76e-12)]_31 chrXI:140673-141490 2.51e-08 11_[-3(6.23e-12)]_59 chrV:85089-86955 8.75e-01 100 chrIV:619702-620189 4.04e-05 65_[+1(3.46e-09)]_5 chrVI:226305-227326 8.57e-01 100 chrXIII:347177-347955 8.91e-01 100 chrXIV:64975-66274 3.39e-01 100 chrXIII:131627-132118 6.26e-09 28_[-3(2.81e-12)]_42 chrXII:603450-604775 6.86e-01 100 chrVII:938915-939759 9.76e-01 100 chrXI:208237-209752 5.95e-01 100 chrXI:617640-619266 9.93e-01 100 chrXIII:19002-21556 2.12e-01 100 chrII:604136-607150 5.98e-01 100 chrV:130805-131399 1.32e-07 21_[+1(4.11e-11)]_49 chrXII:459622-460680 3.96e-01 100 chrIV:769604-770031 1.62e-01 100 chrXII:242188-243530 8.93e-02 100 chrIII:26976-29215 1.75e-01 100 chrXVI:498138-499318 6.20e-01 100 chrV:469154-469658 5.64e-01 100 chrXIV:632438-632787 3.36e-15 43_[-2(4.65e-14)]_29 chrVII:730964-731441 2.32e-10 2_[+3(1.99e-08)]_4_[-1(1.57e-09)]_\ 34 chrXII:440394-442110 1.72e-01 100 chrXVI:378667-378938 4.90e-01 100 chrXII:1002258-1003119 2.99e-01 100 chrXV:908161-909065 8.61e-01 100 chrVII:1004047-1004397 1.35e-07 59_[+3(1.03e-11)]_11 chrVI:95396-95921 1.13e-01 100 chrXI:98775-105841 6.39e-01 100 chrXV:1027786-1029415 5.83e-01 100 chrVII:726474-729160 8.69e-01 100 chrXV:109407-111196 9.31e-01 100 chrVII:574771-577302 6.19e-02 29_[-2(7.48e-05)]_43 chrXVI:280467-281870 6.36e-01 100 chrXII:592280-592977 4.22e-08 6_[+2(2.15e-12)]_66 chrXVI:810587-811342 8.80e-01 100 chrVIII:374720-376503 8.81e-01 100 chrV:363611-364474 1.42e-01 100 chrXII:95509-95894 9.87e-02 100 chrXVI:622270-623133 3.53e-02 23_[+3(8.73e-05)]_47 chrXIII:67486-68064 4.77e-01 100 chrXII:366052-366546 5.34e-02 100 chrII:444745-444999 2.60e-01 100 chrVII:968864-969456 4.37e-01 100 chrXVI:921178-921461 6.70e-02 100 chrXIII:91082-92095 9.04e-01 100 chrXV:31026-31961 5.09e-01 100 chrXIII:158764-158995 1.25e-01 100 chrI:138998-139347 4.66e-02 45_[-1(3.77e-05)]_25 chrV:354709-355292 8.89e-15 [+3(6.23e-12)]_3_[-1(7.34e-10)]_37 chrVI:31051-31456 1.25e-01 100 chrIX:139602-142516 8.14e-01 100 chrXVI:927790-928281 7.92e-01 100 chrXV:505186-505446 4.00e-01 100 chrXII:1012133-1013735 1.85e-01 100 chrIV:1239367-1240173 6.28e-01 100 chrXV:340152-340756 3.09e-01 100 chrVII:545084-546026 9.80e-01 100 chrXIII:556915-558481 7.06e-01 100 chrVIII:62534-62899 4.19e-01 100 chrIV:234125-235909 2.73e-01 100 chrIII:3606-4471 5.66e-02 100 chrVII:328427-329080 9.60e-01 100 chrXV:986933-987985 5.16e-01 100 chrXIII:732108-733590 7.04e-01 100 chrII:234718-235975 1.84e-01 100 chrX:517659-517759 2.65e-06 21_[-3(8.02e-09)]_49 chrVII:438626-439962 9.98e-01 100 chrX:380459-380559 1.89e-01 100 chrXII:605127-605596 3.68e-01 100 chrXII:241657-241986 4.23e-01 100 chrXVI:768836-770265 4.02e-01 100 chrXIII:572629-573150 7.21e-15 35_[+1(6.70e-11)]_4_[-3(8.02e-12)]_\ 1 chrXIV:392378-392715 9.43e-01 100 chrIV:667670-668487 6.26e-13 17_[+2(2.04e-13)]_55 chrIV:465171-465723 2.34e-01 100 chrXI:386420-387216 9.18e-01 100 chrXI:282622-284872 2.71e-01 100 chrIX:321219-324392 1.07e-01 100 chrII:9359-9895 1.37e-12 12_[-2(1.88e-10)]_27_[-1(2.68e-09)]_\ 3 chrXV:663489-664215 2.30e-17 1_[+1(9.82e-10)]_17_[+2(3.54e-10)]_\ 24 chrX:374188-374288 2.18e-14 19_[+1(1.30e-09)]_4_[-3(2.81e-12)]_\ 17 chrXIII:550005-553218 1.19e-01 100 chrVII:277068-278743 2.55e-01 100 chrII:285632-288427 4.28e-01 100 chrXI:44608-46181 6.86e-01 100 chrVII:805799-807781 3.36e-01 100 chrXIII:807951-808544 9.56e-05 40_[+1(1.88e-08)]_30 chrVII:779414-779930 8.65e-11 10_[+3(4.69e-09)]_3_[-1(1.32e-08)]_\ 27 chrXIII:378796-379558 7.51e-01 100 chrXII:1051935-1052200 1.75e-08 45_[+1(5.18e-13)]_25 chrVIII:34384-36171 1.30e-01 100 chrIX:284834-285324 2.55e-01 100 chrII:168002-169708 8.00e-03 41_[-2(4.84e-05)]_31 chrVIII:471332-472361 6.27e-01 100 chrXVI:377888-378488 4.31e-01 100 chrXII:423657-424581 7.04e-01 100 chrVII:828417-828977 3.52e-07 67_[+1(3.63e-11)]_3 chrXIII:222375-224009 1.35e-01 100 chrV:305823-307501 1.41e-01 100 chrVI:157907-158230 8.33e-01 100 chrIV:945665-946624 1.91e-01 100 chrXII:327812-330264 4.22e-01 100 chrIV:359334-359765 1.23e-01 100 chrVII:902563-903141 9.11e-01 100 chrX:396540-396640 1.13e-11 30_[+1(3.66e-13)]_3_[-3(1.60e-05)]_\ 7 chrI:71750-73690 5.35e-02 100 chrVIII:556583-556768 4.24e-01 100 chrXV:80349-81551 9.85e-01 100 chrIV:616339-617207 4.24e-02 100 chrXIII:892959-895228 8.74e-01 100 chrVII:856734-857651 7.70e-01 100 chrXIV:529058-530605 5.56e-01 100 chrX:233662-233762 1.52e-05 60_[-2(1.27e-09)]_12 chrXIV:351623-353067 4.90e-01 100 chrX:139028-139128 2.00e-01 100 chrV:264889-268252 4.58e-02 66_[+2(6.63e-05)]_6 chrXII:875162-876300 8.22e-01 100 chrXVI:822647-824297 7.97e-01 100 chrV:42136-42658 7.11e-01 100 chrVII:882426-884112 5.79e-02 100 chrXVI:819295-820320 1.43e-01 100 chrXV:587027-589177 8.23e-01 100 chrX:650841-650941 4.17e-01 100 chrXIV:776732-777207 2.83e-01 100 chrX:120262-120362 2.83e-01 100 chrXII:515294-516880 8.17e-01 100 chrXII:369624-371380 5.61e-01 100 chrVII:609297-610212 3.50e-01 100 chrXII:728319-728615 2.88e-01 100 chrXI:457832-458967 8.39e-01 100 chrXVI:74970-76895 5.62e-01 100 chrIV:915026-917353 8.21e-01 100 chrXIV:674902-676045 9.20e-01 100 chrIV:768243-769034 1.50e-01 100 chrIV:1359221-1361224 7.42e-01 100 chrX:90084-90184 5.49e-01 100 chrXIV:715454-716658 9.24e-01 100 chrIV:491467-492844 8.81e-01 100 chrXIII:23973-25732 1.61e-01 100 chrXIV:413539-416227 9.32e-01 100 chrVII:110301-110772 8.37e-01 100 chrIV:644808-645366 3.22e-01 100 chrII:255084-255752 1.69e-01 100 chrVIII:554113-554737 7.16e-01 100 chrVI:204521-204969 1.89e-01 100 chrXIV:499206-500847 6.10e-01 100 chrXVI:481436-481951 3.56e-01 100 chrXII:805485-807140 5.28e-02 14_[+3(5.43e-05)]_56 chrIII:162131-164775 3.51e-01 100 chrXII:201643-202736 5.07e-01 100 chrXV:167999-168446 1.08e-02 16_[-2(6.48e-05)]_56 chrXII:818506-820439 8.65e-03 21_[+1(5.35e-05)]_49 chrIX:255031-257124 7.49e-02 100 chrXVI:286362-286687 6.36e-01 100 chrXI:379231-381433 4.40e-01 100 chrXV:159160-160736 9.97e-01 100 chrXIII:420283-420864 7.16e-07 56_[+1(1.21e-10)]_14 chrX:525877-525977 3.90e-01 100 chrXVI:585632-586308 7.09e-02 4_[+3(3.21e-05)]_66 chrXV:977079-981117 2.44e-01 100 chrIV:1016961-1017481 5.34e-15 27_[+1(2.17e-11)]_3_[-3(6.81e-11)]_\ 10 chrXIII:651185-652985 3.28e-01 100 chrV:166820-167470 2.40e-01 100 chrIII:57388-60923 6.66e-01 100 chrV:422786-425525 3.06e-01 100 chrII:644962-645438 7.24e-16 33_[+3(6.23e-12)]_3_[-1(5.26e-11)]_\ 4 chrVI:136752-137689 5.13e-01 100 chrXV:866604-868162 3.19e-01 100 chrVI:210473-211668 8.31e-01 100 chrXV:710133-710514 8.14e-01 100 chrXI:578731-579418 9.58e-06 14_[-1(4.83e-09)]_56 chrV:99881-100359 3.96e-01 100 chrII:45060-45342 8.04e-01 100 chrIV:330774-333365 8.48e-01 100 chrII:392975-397297 6.48e-01 100 chrXIII:758970-763129 3.16e-01 100 chrXI:163267-164514 4.94e-01 100 chrXI:261032-262742 7.30e-01 100 chrIV:1243151-1243322 6.07e-01 100 chrV:288114-288719 7.22e-07 68_[+1(7.56e-11)]_2 chrXV:274478-274975 1.24e-09 2_[-2(1.59e-10)]_25_[+1(3.38e-05)]_\ 15 chrIV:132679-133196 5.70e-01 100 chrXVI:730886-731318 8.35e-02 100 chrIII:315629-316494 3.87e-02 3_[-2(7.30e-05)]_69 chrXV:353916-354301 3.11e-14 8_[-3(4.21e-12)]_62 chrX:195398-195498 4.94e-01 100 chrIV:1385537-1385801 8.09e-02 100 chrXI:243180-245992 4.33e-01 100 chrII:159820-160997 2.06e-03 70_[-2(8.82e-05)]_2 chrXII:867874-868204 9.23e-01 100 chrXII:710533-710894 1.80e-01 100 chrVII:845207-846291 4.13e-01 100 chrXVI:696057-697312 8.30e-01 100 chrIV:83441-83816 1.45e-06 18_[-1(2.62e-10)]_52 chrIV:808344-810343 4.30e-01 100 chrXII:929972-931862 9.91e-01 100 chrXV:300880-301450 5.95e-06 61_[-1(2.92e-09)]_9 chrIV:118428-118894 1.27e-01 100 chrXV:976281-976741 3.12e-08 10_[-1(1.67e-11)]_60 chrXV:1003915-1005497 9.47e-01 100 chrXII:932124-932562 8.41e-01 100 chrIII:127587-127902 3.36e-15 28_[-2(4.65e-14)]_44 chrXVI:575853-576336 5.76e-01 100 chrXIII:352087-353289 1.77e-01 100 chrXIV:253189-254793 9.95e-01 100 chrXVI:640574-641649 5.24e-01 100 chrXI:202516-203307 1.28e-01 100 chrIV:117156-118243 6.50e-01 100 chrIV:306244-307818 7.75e-01 100 chrVII:787022-788685 9.94e-01 100 chrXVI:39974-40674 1.26e-02 100 chrVI:53203-55984 8.34e-01 100 chrVI:162037-162385 5.12e-01 100 chrI:180940-181520 1.19e-05 52_[-1(1.57e-09)]_18 chrXIII:162952-164367 7.94e-01 100 chrXI:108096-110157 1.01e-01 100 chrXIII:861163-861716 5.18e-01 100 chrXIV:585400-586707 9.26e-01 100 chrXII:229932-231131 5.47e-01 100 chrVII:533778-535167 9.09e-01 100 chrXII:300296-301496 2.30e-01 100 chrVI:63985-65277 8.76e-01 100 chrVII:959354-959543 2.23e-01 100 chrX:453308-453408 2.41e-01 100 chrII:612234-614312 9.37e-01 100 chrXII:47471-49206 9.53e-01 100 chrVI:82192-84509 2.33e-01 100 chrV:460508-462224 8.11e-01 100 chrIV:1301561-1302538 5.93e-01 100 chrXVI:256002-257167 2.25e-01 100 chrVII:362982-364446 2.54e-01 100 chrXII:704290-704946 8.34e-01 100 chrXII:373421-374720 3.53e-01 100 chrXV:485008-487851 7.53e-01 100 chrXV:281986-282419 1.13e-11 27_[+3(1.60e-05)]_3_[-1(3.66e-13)]_\ 10 chrIII:141968-142971 6.19e-01 100 chrXV:911934-912664 9.94e-01 100 chrX:466500-466600 1.47e-01 100 chrXII:789886-791750 7.36e-02 100 chrVII:913631-916765 5.47e-01 100 chrXII:282764-284188 6.95e-01 100 chrX:348806-348906 9.48e-01 100 chrII:163010-163937 5.41e-01 100 chrIV:1434454-1434678 8.31e-01 100 chrXIII:168242-169043 1.49e-01 100 chrVIII:423149-423802 3.46e-01 100 chrXII:1038609-1042320 8.51e-01 100 chrVII:287235-287889 9.42e-01 100 chrXVI:67017-67481 3.58e-01 100 chrII:392532-392814 1.31e-02 72_[+2(1.88e-05)] chrXIV:301472-302315 9.17e-02 100 chrXIII:480410-480797 2.49e-07 59_[+1(2.62e-10)]_11 chrXI:46716-47009 6.19e-01 100 chrIX:420721-421719 2.01e-01 100 chrX:608321-608421 1.15e-01 100 chrVI:63619-63808 1.65e-01 100 chrIII:168069-169177 5.76e-01 100 chrXI:513075-513603 3.33e-06 34_[+1(5.44e-10)]_36 chrXI:141689-142756 2.03e-01 100 chrIII:107149-107828 2.20e-01 100 chrII:165035-165611 7.70e-01 100 chrVII:774163-774711 5.45e-07 12_[-1(1.51e-10)]_58 chrX:378245-378345 1.39e-18 17_[-2(3.54e-10)]_17_[-1(5.26e-11)]_\ 8 chrXV:877252-878101 6.96e-01 100 chrXIV:720832-723208 7.57e-01 100 chrXIV:166895-167766 4.85e-01 100 chrIX:248491-249393 5.25e-06 17_[-1(2.62e-10)]_53 chrXIII:748307-748495 5.74e-01 100 chrX:651874-651974 1.54e-01 100 chrVIII:133971-134773 7.52e-07 48_[-1(3.61e-10)]_22 chrXV:312545-313044 2.64e-01 100 chrI:68286-69288 8.92e-01 100 chrXIII:300947-301940 7.62e-01 100 chrII:191847-194043 3.09e-01 100 chrXI:313206-314016 6.98e-01 100 chrXIV:282081-282948 3.41e-01 100 chrXIII:183749-183980 7.45e-01 100 chrV:77358-79840 4.69e-01 100 chrXIII:279943-280474 8.85e-01 100 chrXII:1029113-1030334 3.12e-01 100 chrXI:518695-521564 9.01e-02 100 chrXV:216305-216695 1.43e-02 64_[+2(2.09e-05)]_8 chrXVI:642019-643402 7.56e-02 100 chrII:266211-266661 6.43e-15 8_[+3(4.21e-12)]_4_[-1(1.21e-10)]_\ 28 chrXI:312592-313039 4.59e-01 100 chrXIII:878609-881189 4.62e-01 100 chrXV:722862-724752 9.48e-01 100 chrV:282180-284012 5.09e-01 100 chrIV:1491946-1492969 5.50e-01 100 chrVII:647944-648511 5.09e-01 100 chrXV:423776-424720 2.00e-01 100 chrIV:555365-556660 3.53e-01 100 chrXV:79789-80105 2.36e-01 100 chrVIII:411001-411780 1.46e-01 100 chrII:477106-477770 3.58e-01 100 chrII:407580-410852 4.15e-01 100 chrIV:1461475-1461835 5.45e-01 100 chrIV:437571-438035 1.24e-09 24_[-2(2.76e-12)]_48 chrIV:362677-363550 3.08e-01 100 chrXVI:718302-719790 6.04e-01 100 chrIII:14900-16921 9.98e-01 100 chrXII:687651-687923 7.52e-01 100 chrXVI:785682-785953 1.33e-01 100 chrXVI:55834-56418 3.23e-01 100 chrIV:1305438-1305830 3.35e-08 51_[-2(2.76e-12)]_21 chrXV:968056-970034 8.11e-01 100 chrXV:228123-228516 1.66e-09 68_[-2(4.65e-14)]_4 chrVII:599334-601455 3.66e-01 100 chrVIII:487462-488575 3.88e-01 100 chrVIII:173563-176068 8.63e-01 100 chrIV:1354461-1355563 6.56e-01 100 chrXIV:495226-495547 4.27e-01 100 chrIX:126270-130178 2.24e-03 18_[+3(1.32e-05)]_52 chrXIV:530783-531523 9.63e-01 100 chrVII:876199-879030 6.64e-01 100 chrV:61016-62173 4.88e-01 100 chrXII:645864-646180 2.48e-01 100 chrX:291086-291186 6.15e-01 100 chrXIV:442779-444719 3.38e-02 100 chrX:115576-115676 7.84e-01 100 chrXV:841541-842172 9.77e-01 100 chrXII:837593-839417 2.87e-01 100 chrXV:899806-901265 3.12e-01 100 chrXI:325984-327615 6.89e-02 100 chrXII:568041-568463 6.79e-01 100 chrVIII:103541-106107 8.82e-01 100 chrX:538433-538533 2.11e-09 44_[+3(3.35e-13)]_26 chrXII:948844-954758 6.75e-01 100 chrVIII:475503-475921 8.51e-11 35_[+1(1.75e-08)]_4_[-3(7.04e-10)]_\ 1 chrV:269200-270202 1.20e-01 100 chrX:531584-531684 6.46e-08 18_[-1(6.33e-12)]_52 chrXI:302716-303199 3.45e-01 100 chrVII:649639-650591 4.82e-01 100 chrXIV:241475-241976 5.03e-01 100 chrVII:1048821-1050051 1.90e-03 18_[+2(2.85e-05)]_54 chrXII:673050-673279 3.43e-01 100 chrXIII:510821-512044 1.11e-01 46_[-1(8.39e-05)]_24 chrIII:131591-131999 5.13e-01 100 chrI:182169-183134 2.47e-01 100 chrXV:92726-94742 4.63e-01 100 chrXIII:463349-463878 1.49e-07 40_[-1(8.51e-11)]_30 chrIV:1299975-1301263 5.59e-01 100 chrXV:905958-906378 8.02e-01 100 chrXII:348044-348700 6.05e-01 100 chrIII:34681-35401 4.44e-01 100 chrXVI:214581-215620 2.36e-02 6_[+3(3.65e-05)]_64 chrIV:835769-836244 6.41e-01 100 chrIX:138106-139153 4.13e-03 56_[+2(9.14e-06)]_16 chrXI:230925-231648 1.66e-01 100 chrX:79145-79245 6.83e-01 100 chrX:293734-293834 6.92e-02 66_[-2(8.03e-05)]_6 chrV:443062-443375 4.33e-22 25_[+1(1.64e-12)]_17_[+2(2.04e-13)] chrVII:436553-438448 2.74e-01 100 chrXIII:747663-748145 1.31e-14 29_[+1(4.00e-10)]_4_[-3(2.81e-12)]_\ 7 chrVII:289312-289888 9.38e-01 100 chrXIII:667162-668194 7.42e-01 100 chrXV:407551-408230 8.01e-01 100 chrXVI:775613-776075 1.72e-01 100 chrV:335483-337241 9.47e-01 100 chrXIV:568055-568519 9.38e-02 100 chrXVI:695255-695467 3.06e-01 100 chrVI:31660-32330 3.90e-01 100 chrVII:706916-707178 6.98e-01 100 chrXIII:119258-119849 6.50e-01 100 chrIV:992685-993358 8.41e-01 100 chrXII:568626-569385 3.15e-01 100 chrVII:310430-312706 4.92e-01 100 chrXIII:195931-196293 4.52e-02 62_[+1(3.77e-05)]_8 chrV:434403-435191 2.10e-01 100 chrIX:23447-25293 6.59e-01 100 chrXIII:219295-221132 2.65e-01 100 chrIII:70281-73912 2.58e-01 100 chrVIII:271930-276073 3.18e-01 100 chrXIII:388315-388661 5.32e-01 100 chrXII:447847-448838 2.70e-01 100 chrXVI:856716-857184 3.90e-12 18_[+3(5.30e-09)]_4_[-1(7.34e-10)]_\ 18 chrV:490929-492549 6.53e-01 100 chrVII:766114-766745 6.97e-01 100 chrIX:204911-205324 1.76e-01 100 chrXV:254271-255126 8.73e-01 100 chrIII:90867-91113 1.72e-06 10_[-1(1.57e-09)]_60 chrXVI:860151-860872 3.29e-01 100 chrXIII:886990-889482 8.83e-01 100 chrIV:1345271-1345989 4.91e-01 100 chrVI:222741-224111 2.04e-01 100 chrXIII:320977-321320 9.18e-07 40_[+1(5.94e-11)]_30 chrXIV:104600-112850 4.43e-01 100 chrXIV:619752-620029 2.88e-01 100 chrXI:608990-613030 8.08e-01 100 chrXI:517166-518366 8.19e-01 100 chrX:523730-523830 3.35e-08 25_[+2(2.76e-12)]_47 chrXIV:701844-704244 6.73e-01 100 chrVIII:144056-148771 2.25e-01 100 chrIV:927562-930345 5.14e-02 61_[+1(6.11e-05)]_9 chrIV:340123-341630 2.25e-01 100 chrXIII:290585-291133 1.40e-14 8_[+3(6.23e-12)]_3_[-1(1.19e-09)]_\ 29 chrVII:738836-739647 8.01e-01 100 chrI:62090-63298 7.46e-01 100 chrXI:38681-39739 7.44e-01 100 chrX:196516-196616 9.06e-01 100 chrXV:520586-520933 3.67e-01 100 chrXIII:302750-303374 6.72e-02 100 chrXI:258049-260676 8.09e-01 100 chrX:617733-617833 2.02e-08 45_[-2(2.15e-12)]_27 chrIV:220944-222290 7.66e-01 100 chrVIII:48195-49017 9.68e-01 100 chrXVI:131703-132219 2.63e-01 100 chrII:555833-556317 7.89e-01 100 chrXII:97076-97867 9.51e-01 100 chrIII:78284-78885 4.93e-01 100 chrIV:758802-759645 6.08e-01 100 chrXIII:225144-226899 8.82e-01 100 chrII:452646-453411 7.87e-01 100 chrXI:246162-247341 8.46e-01 100 chrXVI:692821-695032 2.53e-01 100 chrI:81955-82327 7.60e-01 100 chrII:256120-257901 1.67e-01 100 chrIII:260409-263160 4.14e-01 100 chrIX:174477-174677 7.15e-01 100 chrXI:558675-559453 8.58e-01 100 chrII:59576-61194 9.70e-01 100 chrVII:784208-785749 4.39e-01 100 chrIV:410195-410787 5.02e-01 100 chrX:542790-542890 4.65e-06 33_[+2(2.11e-09)]_39 chrXIV:86647-90038 6.34e-02 100 chrXVI:338422-339171 7.70e-01 100 chrIV:238879-239383 7.90e-01 100 chrXI:525424-526305 4.46e-01 100 chrV:396710-398297 1.15e-01 64_[-3(5.30e-05)]_6 chrV:376983-380823 7.37e-01 100 chrV:66063-69594 1.43e-01 100 chrV:438503-439002 2.09e-19 4_[-2(3.54e-10)]_17_[-1(7.29e-12)]_\ 21 chrIV:980724-981169 1.90e-05 69_[+1(4.10e-09)]_1 chrIII:149585-150216 1.78e-01 100 chrII:350585-351048 1.66e-01 100 chrIX:325728-326440 3.17e-01 100 chrXVI:519939-520485 4.96e-01 100 chrIX:257388-258305 3.15e-01 100 chrXII:1017629-1019337 7.94e-01 100 chrVII:400367-400557 9.49e-01 100 chrVII:986671-987649 6.88e-01 100 chrXIII:498984-500784 4.28e-02 100 chrVII:648753-649367 2.02e-01 100 chrXII:855587-857600 2.12e-01 100 chrXV:882688-884170 7.93e-02 100 chrXV:684124-686243 7.85e-01 100 chrXIV:569613-570155 3.72e-22 24_[+1(1.40e-12)]_17_[+2(2.04e-13)]_\ 1 chrVII:794184-794508 5.50e-01 100 chrVIII:16763-18205 4.84e-01 100 chrVIII:401047-401561 9.32e-01 100 chrVII:798531-800141 6.16e-01 100 chrX:519771-519871 7.06e-01 100 chrXV:1048990-1049489 3.01e-01 100 chrII:136049-136270 2.22e-02 100 chrXV:758864-759549 5.28e-01 100 chrXV:778129-779536 9.54e-01 100 chrXIII:145990-146287 5.31e-02 100 chrVIII:113773-116431 8.22e-01 100 chrIV:1328746-1330040 1.30e-01 100 chrXV:619163-624413 3.37e-01 100 chrIV:308086-310176 8.40e-01 100 chrXV:505670-506954 7.92e-01 100 chrX:354037-354137 7.29e-06 43_[-2(2.11e-09)]_29 chrXII:897770-899755 1.14e-01 100 chrXV:514434-514730 3.50e-01 100 chrXII:281927-282459 1.85e-01 100 chrVIII:296765-297212 2.66e-01 100 chrXV:842364-842950 4.14e-01 100 chrXII:252967-255706 1.90e-01 100 chrIV:1175615-1176037 1.11e-07 69_[+3(8.02e-12)]_1 chrII:88910-89974 1.88e-02 53_[-2(4.07e-05)]_19 chrIX:183104-183697 6.61e-01 100 chrXIII:625829-627369 9.32e-02 100 chrVI:86395-86989 6.59e-01 100 chrIV:1277755-1279079 9.40e-01 100 chrXII:734621-734931 4.95e-01 100 chrX:391798-391898 4.28e-01 100 chrXI:74440-74821 1.38e-14 50_[-2(4.65e-14)]_22 chrXVI:303069-304363 9.53e-01 100 chrIV:232036-233952 2.62e-01 100 chrXIV:302635-303807 3.56e-02 100 chrXIII:115573-118942 6.80e-01 100 chrXV:795830-798829 4.23e-01 100 chrXI:364415-365259 9.34e-01 100 chrXIV:518816-519131 5.96e-01 100 chrII:347411-347932 6.68e-05 43_[-1(7.93e-08)]_27 chrIV:129282-130967 6.38e-01 100 chrXII:1028777-1028947 8.47e-01 100 chrXII:566390-567012 2.49e-02 39_[-3(7.42e-05)]_31 chrXIV:493294-495039 5.74e-01 100 chrVIII:466813-467256 6.77e-12 21_[+3(1.03e-11)]_4_[-1(1.04e-07)]_\ 15 chrII:478962-479449 9.09e-01 100 chrXVI:424865-425599 3.72e-01 100 chrXI:462982-465017 9.10e-01 100 chrVII:771821-772293 2.12e-01 100 chrXIII:22138-23645 7.09e-01 100 chrXVI:879416-881097 6.29e-01 100 chrX:57858-57958 4.60e-01 100 chrV:310642-312289 8.02e-01 100 chrIV:45175-46196 2.44e-01 100 chrXV:779768-781041 5.17e-01 100 chrXII:498538-499795 4.03e-01 100 chrXIV:275476-277356 9.80e-01 100 chrXVI:794963-796166 8.08e-01 100 chrVII:541725-542158 2.26e-05 8_[-1(1.19e-09)]_62 chrIX:335768-336618 6.45e-01 100 chrXIV:602102-602566 1.41e-13 34_[-2(2.04e-13)]_38 chrXII:262886-263968 6.54e-01 100 chrXI:333800-335007 4.67e-01 100 chrXIII:837719-838215 1.24e-10 18_[-2(2.11e-09)]_24_[+3(1.39e-08)] chrIV:322206-323627 1.03e-01 100 chrVIII:381443-384643 5.07e-01 100 chrXIII:768195-768439 9.90e-01 100 chrVII:397912-398326 9.35e-01 100 chrX:156125-156225 2.90e-01 100 chrIV:1150711-1151189 2.57e-05 7_[+2(8.08e-09)]_65 chrV:362429-363313 4.40e-01 100 chrIV:721813-722095 1.99e-01 100 chrIX:384635-387059 1.36e-01 100 chrIII:295340-296038 1.57e-01 100 chrXV:217174-218443 2.60e-01 100 chrXIII:288010-289968 9.80e-01 100 chrV:544597-545115 9.71e-01 100 chrVII:147936-149446 6.83e-01 100 chrVII:273-928 9.72e-01 100 chrX:122156-122256 3.90e-01 100 chrIV:1268559-1269449 6.72e-01 100 chrIX:98191-99964 9.78e-01 100 chrII:332388-333062 9.02e-01 100 chrXIV:96005-96540 1.98e-12 10_[+1(2.35e-10)]_3_[-3(4.69e-09)]_\ 27 chrXI:164930-165452 1.99e-01 100 chrII:301091-301700 9.01e-01 100 chrVII:23921-25812 3.05e-01 100 chrXIII:224654-224906 7.10e-01 100 chrXII:712086-712721 6.39e-01 100 chrIV:357200-358552 7.22e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************